RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2149
(108 letters)
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 110 bits (277), Expect = 3e-32
Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 33/138 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN-------------- 46
+SF A L + + +SG ++L+A N +GQ STA L VK
Sbjct: 56 ISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTV 115
Query: 47 -------------------IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+K+ + I+ S FQ+S+EGD Y L I+EA+PED G Y
Sbjct: 116 RQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 88 CIATNQGGQVVLTANLKV 105
ATN G+ TA L V
Sbjct: 176 VNATNSVGRATSTAELLV 193
Score = 72.4 bits (178), Expect = 2e-17
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSK--YFQMSKEGDSYVLRI 75
FT + STA + W + ++I S Q+S L I
Sbjct: 8 FTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTI 67
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ G+Y ATN GQ TA L V
Sbjct: 68 PAVTKANSGRYSLKATNGSGQATSTAELLVKA 99
Score = 50.1 bits (120), Expect = 6e-09
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+S EG SL++ Y EDSG +++ A NS G+ STA L V+
Sbjct: 152 ISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 108 bits (271), Expect = 2e-30
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 30/135 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
MSF + A L + EDSG +T A N+AG S+ L VK
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG 207
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ W K + ++ K +++ E + I D G+Y+C A
Sbjct: 208 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 267
Query: 91 TNQGGQVVLTANLKV 105
+N G ++ +
Sbjct: 268 SNDVGSYTCVGSITL 282
Score = 105 bits (265), Expect = 1e-29
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 31/138 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
M+ TA+L + + D+G +T A N AG+ +A+L V+
Sbjct: 54 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 113
Query: 44 --------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I + W K + I+ S F+MS VL + ED G Y C
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 90 ATNQGGQVVLTANLKVLD 107
A N G + +LKV +
Sbjct: 174 AHNAAGSASSSTSLKVKE 191
Score = 73.6 bits (181), Expect = 3e-17
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
F L+ V+ + + I I W K ++ I+P ++M+ ++ L + +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 67
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVL 106
D GQY C A+N G+ +A L V
Sbjct: 68 VTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
Score = 50.9 bits (122), Expect = 4e-09
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ E S+ + D G + +A N G +T+K
Sbjct: 241 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 104 bits (260), Expect = 1e-29
Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI--------------- 45
MS +G T +L + T +ED G++T A N G+VE++++L ++
Sbjct: 56 MSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG 115
Query: 46 ------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEA-FPEDEGQY 86
+ W G K+++ S+ + L + G+Y
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Query: 87 KCIATNQGGQVVLTANLKVLD 107
K +N G V ++++ D
Sbjct: 176 KVQLSNVFGTVDAILDVEIQD 196
Score = 82.4 bits (204), Expect = 3e-21
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
+ ++ A+L+ + +IKW + K + S+ ++MS +G ++ L +
Sbjct: 10 IRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMT 69
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVL 106
EDEG Y CIATN+ G+V ++ L +
Sbjct: 70 EEQEDEGVYTCIATNEVGEVETSSKLLLQ 98
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 99.0 bits (247), Expect = 1e-27
Identities = 31/142 (21%), Positives = 50/142 (35%), Gaps = 36/142 (25%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI---------------- 45
F+G L++ + ++D+ ++ +RA N G V TA L V+
Sbjct: 56 EFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Query: 46 -------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLR-ISEAFPEDEGQ 85
I WQKG +I + ++Q+ L + +D G
Sbjct: 116 ALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 86 YKCIATNQGGQVVLTANLKVLD 107
Y A N+ G T L V D
Sbjct: 176 YVVCAKNRFGIDQKTVELDVAD 197
Score = 73.6 bits (181), Expect = 7e-18
Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVKTI-----NIKWQKGDKIIKPS--KYFQMSKEGDSYVLRI 75
F N + +S A L K +KW + K I KY +G + L I
Sbjct: 7 FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLII 66
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ +D Y+ ATNQGG V TA+L+V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVE 97
Score = 44.3 bits (105), Expect = 8e-07
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 1 MSFEGTTAS-LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + S + N +D+G + + A N G + T L V
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 102 bits (255), Expect = 6e-27
Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 30/137 (21%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
MSF + A L + EDSG +T A N+AG S+ L VK
Sbjct: 340 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKG 399
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ W K + ++ K +++ E + I D G+Y+C A
Sbjct: 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKA 459
Query: 91 TNQGGQVVLTANLKVLD 107
+N G ++ +
Sbjct: 460 SNDVGSDTCVGSITLKA 476
Score = 95.6 bits (238), Expect = 1e-24
Identities = 28/138 (20%), Positives = 47/138 (34%), Gaps = 31/138 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ E S+ + D G + +A N G +T+K
Sbjct: 433 IMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVG 492
Query: 44 -------------TINIKWQK-GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I++ W K +I++ S +S + L+ S A P + G+Y C
Sbjct: 493 EEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQ 552
Query: 90 ATNQGGQVVLTANLKVLD 107
N+ G A L VL+
Sbjct: 553 IKNEAGTQECFATLSVLE 570
Score = 92.9 bits (231), Expect = 1e-23
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 31/137 (22%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
M+ TA+L + + D+G +T A N AG+ +A+L V+
Sbjct: 246 MTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQ 305
Query: 44 --------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I + W K + I+ S F+MS VL + ED G Y C
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 90 ATNQGGQVVLTANLKVL 106
A N G + +LKV
Sbjct: 366 AHNAAGSASSSTSLKVK 382
Score = 91.0 bits (226), Expect = 5e-23
Identities = 35/138 (25%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
M F+ ASLV+N D G +T +A NS G V S+A L +K
Sbjct: 54 MQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHE 113
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+ + W K +++K Q S + L+I + GQY
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYN 173
Query: 88 CIATNQGGQVVLTANLKV 105
C A+N G +A L +
Sbjct: 174 CSASNPLGTASSSAKLTL 191
Score = 86.8 bits (215), Expect = 1e-21
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 33/138 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
SF A+L + T + G + A N G S+A+LT+
Sbjct: 150 TSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDL 209
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
I I W K ++ I+P ++M+ ++ L + + D GQY
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 88 CIATNQGGQVVLTANLKV 105
C A+N G+ +A L V
Sbjct: 270 CYASNVAGKDSCSAQLGV 287
Score = 67.1 bits (164), Expect = 1e-14
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 33 QVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+ L K I I W K ++ + ++M + + L I++ D G+Y
Sbjct: 18 AIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYT 77
Query: 88 CIATNQGGQVVLTANLKV 105
C A N G V +A L +
Sbjct: 78 CKAENSVGAVASSAVLVI 95
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 98.4 bits (245), Expect = 2e-26
Identities = 20/145 (13%), Positives = 46/145 (31%), Gaps = 40/145 (27%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
F+ +L++ ++D+G++ + + G+ +S +L +
Sbjct: 54 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSA 113
Query: 44 -----------------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFP 80
+ + W I+ S + G+ L+I+E P
Sbjct: 114 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTP 173
Query: 81 EDEGQYKCIATNQGGQVVLTANLKV 105
D+G+Y + T +L
Sbjct: 174 NDKGKYVMELFDGKTGHQKTVDLSG 198
Score = 88.0 bits (218), Expect = 2e-22
Identities = 19/158 (12%), Positives = 38/158 (24%), Gaps = 52/158 (32%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN-------------- 46
G L +N D G + + + + T L+ + +
Sbjct: 157 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 216
Query: 47 -------------------------------------IKWQKGDKIIKPSKYFQMSKE-G 68
+ W K +K + + + E G
Sbjct: 217 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276
Query: 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ I+ D G+Y + N+ G + V
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314
Score = 69.2 bits (169), Expect = 2e-15
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 33 QVESTARLTVK------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
E L K +I W K ++ I + + L I+E +D G Y
Sbjct: 19 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIY 76
Query: 87 KCIATNQGGQVVLTANLKV 105
+ I + G+ L
Sbjct: 77 EVILKDDRGKDKSRLKLVD 95
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 92.2 bits (229), Expect = 8e-25
Identities = 19/158 (12%), Positives = 39/158 (24%), Gaps = 52/158 (32%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN-------------- 46
G L +N D G + + + + T L+ + +
Sbjct: 52 TGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111
Query: 47 -------------------------------------IKWQKGDKIIKPSKYFQMSKE-G 68
+ W K +K + + + + E G
Sbjct: 112 AEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171
Query: 69 DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ I+ D G+Y + N+ G + V
Sbjct: 172 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 74.5 bits (183), Expect = 4e-18
Identities = 16/83 (19%), Positives = 32/83 (38%)
Query: 23 FTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPED 82
+++ Q+ S V+ + + W I+ S + G+ L+I+E P D
Sbjct: 11 LKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPND 70
Query: 83 EGQYKCIATNQGGQVVLTANLKV 105
+G+Y + T +L
Sbjct: 71 KGKYVMELFDGKTGHQKTVDLSG 93
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 87.8 bits (218), Expect = 3e-24
Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
F + A L + W+KG + + S+ +G + L ++
Sbjct: 16 FLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTA 75
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
A P D G Y C A N G+ A + VL+
Sbjct: 76 ALPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
Score = 53.5 bits (129), Expect = 6e-11
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+G L+L D+G++ RA N+AG+ + A +TV
Sbjct: 62 FPADGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVL 104
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 84.3 bits (209), Expect = 6e-23
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 36 STARLTVKTI-----NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+AR + T + W + +++ S Q++ IS DEG Y +
Sbjct: 30 ESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVV 89
Query: 91 TNQGGQVVLTANLKV 105
N G+ L +
Sbjct: 90 ENSEGKQEAEFTLTI 104
Score = 51.6 bits (124), Expect = 4e-10
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
++ ++ +++ D G +++ NS G+ E+ LT++
Sbjct: 63 VTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 83.1 bits (206), Expect = 1e-22
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
++ +S A+ VK W K K I +++S++ + L I +
Sbjct: 9 IVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHK 68
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKV 105
D G Y C N G V + L +
Sbjct: 69 TDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 54.2 bits (131), Expect = 4e-11
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
+S + L ++ T DSGL+T NSAG V S+ +LT+K I
Sbjct: 55 LSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 83.1 bits (206), Expect = 2e-22
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 33 QVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+ + L K I W K K I+ S++ ++ + L I A E G Y
Sbjct: 20 RAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYT 79
Query: 88 CIATNQGGQVVLTANLKVLD 107
+ N+ G NL V+D
Sbjct: 80 LLVENKLGSRQAQVNLTVVD 99
Score = 46.6 bits (111), Expect = 4e-08
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ + L + +E G +TL N G ++ LTV
Sbjct: 56 VENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 97
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 87.6 bits (217), Expect = 5e-22
Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 33/129 (25%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+L+++ ++DSG +T + ++A LTV
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ W K ++ PS YFQ+ + LRI DEG Y+C+A N+ G
Sbjct: 336 VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN---LRILGVVKSDEGFYQCVAENEAGNAQ 392
Query: 99 LTANLKVLD 107
+A L V
Sbjct: 393 SSAQLIVPK 401
Score = 71.0 bits (174), Expect = 4e-16
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 41/139 (29%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------------- 43
+ +L ++ DSG++ A N A A + +
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Query: 44 --------------TINIKWQKGDKIIKP-SKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ W +G+++I+ SK + + + L IS +D G Y C
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN---LLISNVTDDDSGTYTC 292
Query: 89 IATNQGGQVVLTANLKVLD 107
+ T + + +A L VL
Sbjct: 293 VVTYKNENISASAELTVLV 311
Score = 56.8 bits (137), Expect = 5e-11
Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 33/131 (25%)
Query: 9 SLVLNTTYEEDSGLFTLRA-VNSAGQVES-TARLTVKTI--------------------- 45
+++ + ++ D GL+ A + +G + S TA++ V
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 46 ---------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
I WQK + + P S L+IS P D G Y+C A N
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 97 VV-LTANLKVL 106
A +++L
Sbjct: 203 RTGNEAEVRIL 213
Score = 47.5 bits (113), Expect = 8e-08
Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 35/115 (30%)
Query: 26 RAVNSAGQVESTARLTVK-------------------------------TINIKWQKGDK 54
R + + IKW+K
Sbjct: 2 RWGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 55 IIKPSK--YFQMSKEGDSYV--LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
I+ Q G + + S DEG Y+C A+ +++ KV
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 86.0 bits (213), Expect = 1e-21
Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 36/143 (25%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
F+G L++ + ++D+ ++ +RA N G V TA L V+
Sbjct: 55 QEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV 114
Query: 44 ------------------TINIKWQKGDKIIKPSKYFQMSKEGD-SYVLRISEAFPEDEG 84
I WQKG +I + ++Q+ + ++ + +D G
Sbjct: 115 HALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAG 174
Query: 85 QYKCIATNQGGQVVLTANLKVLD 107
Y A N+ G T L V D
Sbjct: 175 FYVVCAKNRFGIDQKTVELDVAD 197
Score = 66.7 bits (163), Expect = 1e-14
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVKTI-----NIKWQKGDKIIKPS--KYFQMSKEGDSYVLRI 75
F N + +S A L K +KW + K I KY +G + L I
Sbjct: 7 FKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLII 66
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ +D Y+ ATNQGG V TA+L+V
Sbjct: 67 ASVTDDDATVYQVRATNQGGSVSGTASLEVEV 98
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 80.8 bits (200), Expect = 1e-21
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
TLR + R + T +KW ++ S + L I +
Sbjct: 11 ITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILD 70
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+D G Y+ + TN G+ A L V
Sbjct: 71 CHTDDSGTYRAVCTNYKGEASDYATLDVTG 100
Score = 51.5 bits (124), Expect = 3e-10
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +L + + +DSG + N G+ A L V
Sbjct: 57 YTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 82.6 bits (204), Expect = 3e-21
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 42/144 (29%)
Query: 4 EGTTASL-VLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI----------------- 45
+G+ + L + D ++ A N+ G++ + RLTV
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK 118
Query: 46 --------------------NIKWQKGDKIIKPSKY---FQMSKEGDSYVLRISEAFPED 82
I W K + S + + L+I ++ D
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 83 EGQYKCIATNQGGQVV-LTANLKV 105
+G+Y+C+ATN G ANL V
Sbjct: 179 QGKYECVATNSAGTRYSAPANLYV 202
Score = 68.3 bits (167), Expect = 1e-15
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMS-KEGDSYVLRIS 76
FT V+ G A + I W K K + ++ + +G VLRI
Sbjct: 9 FTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQ 68
Query: 77 EA-FPEDEGQYKCIATNQGGQVVLTANLKVL 106
P DE Y+C+A+N G++ ++ L VL
Sbjct: 69 PLRTPRDEAIYECVASNNVGEISVSTRLTVL 99
Score = 42.9 bits (101), Expect = 3e-06
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK 43
+ +L + + E D G + A NSAG S A L V+
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 84.5 bits (209), Expect = 7e-21
Identities = 23/139 (16%), Positives = 44/139 (31%), Gaps = 32/139 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ + ++SL + DSG + A + G + + L ++
Sbjct: 56 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEG 115
Query: 44 -------------TINIKWQKGDKIIKPSKYFQMSKE--GDSYVLRISEAFPEDEGQYKC 88
+I W++ ++ + G +L I+ D G+Y C
Sbjct: 116 NPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 89 IATNQGGQVVLTANLKVLD 107
ATN G L + D
Sbjct: 176 TATNHIGTRFQEYILALAD 194
Score = 58.7 bits (142), Expect = 1e-11
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 12/91 (13%)
Query: 29 NSAGQVESTARLTVKTI-----NIKWQKGDKII-------KPSKYFQMSKEGDSYVLRIS 76
N L I W++ ++ + S L I
Sbjct: 9 NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIK 68
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ D G+Y C A ++ G + L +
Sbjct: 69 DVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 83.5 bits (206), Expect = 8e-21
Identities = 20/151 (13%), Positives = 36/151 (23%), Gaps = 51/151 (33%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI------------------ 45
+ + +ED G +T + + ST L
Sbjct: 162 NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 221
Query: 46 -------------------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLR 74
+I W K ++ I + + L
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLL 279
Query: 75 ISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
I+E +D G Y+ I + G+ L
Sbjct: 280 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
Score = 77.0 bits (189), Expect = 2e-18
Identities = 15/150 (10%), Positives = 38/150 (25%), Gaps = 45/150 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI--------------- 45
+ +G + +D G+++ ++ G S +
Sbjct: 51 VESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVP 110
Query: 46 ----------------------------NIKWQKGDKIIKPSKYFQMSKEGDSYV--LRI 75
+ + +K I ++M + ++ + + +
Sbjct: 111 VKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 170
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ EDEG Y + T L
Sbjct: 171 EKLQDEDEGTYTFQLQDGKATNHSTVVLVG 200
Score = 64.2 bits (156), Expect = 8e-14
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 36 STARLTVKTIN----IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
+ + W K + S ++ +G+ + + +D G Y C T
Sbjct: 19 ISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVT 78
Query: 92 NQGGQVVLTA 101
+ G
Sbjct: 79 DTDGIASSYL 88
Score = 47.3 bits (112), Expect = 9e-08
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
F+ +L++ ++D+G++ + + G+ +S +L +
Sbjct: 269 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 81.0 bits (200), Expect = 1e-20
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 36/141 (25%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+G+ L + D G + RA N AG+ E A L V
Sbjct: 51 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENG 110
Query: 44 ------------TINIKWQKGDKIIKPSKY-------FQMSKEGDSYVLRISEAFPEDEG 84
I W++ ++ ++ + S L I + D G
Sbjct: 111 QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 170
Query: 85 QYKCIATNQGGQVVLTANLKV 105
+Y C A ++ G + L +
Sbjct: 171 RYDCEAASRIGGHQKSMYLDI 191
Score = 65.2 bits (159), Expect = 1e-14
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
++ N+ + + + I W + K+I+ ++ + + +G + L +
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL--KGSNTELTVRN 64
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVL 106
D G Y C ATN+ G+ A L+V
Sbjct: 65 IINSDGGPYVCRATNKAGEDEKQAFLQVF 93
Score = 40.6 bits (95), Expect = 2e-05
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + ++SL + DSG + A + G + + L ++
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 77.0 bits (190), Expect = 4e-20
Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 36 STARLTVK------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ K + + W G + ++ S+ ++++ E +L + + D+G Y+C
Sbjct: 17 GHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCK 76
Query: 90 ATNQGGQVVLTANLKV 105
N G+ A L V
Sbjct: 77 VVNDYGEDSSYAELFV 92
Score = 52.7 bits (127), Expect = 1e-10
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+++E A L + + D G + + VN G+ S A L VK
Sbjct: 51 ITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 76.9 bits (190), Expect = 4e-20
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPS-KYFQMSKEGDSYVLRIS 76
F + ++ + + ++++ + W + + ++P + F EG LRI
Sbjct: 8 FKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRIL 67
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKV 105
A D G Y C A N+ G A L+V
Sbjct: 68 AAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 49.2 bits (118), Expect = 2e-09
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
EG L + D+G +T +AVN G + ARL V+
Sbjct: 55 EEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 81.0 bits (200), Expect = 5e-20
Identities = 33/142 (23%), Positives = 47/142 (33%), Gaps = 39/142 (27%)
Query: 4 EGTTASLVL-NTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI----------------- 45
E A L + D ++ A NS G++ A+LTV
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLK 118
Query: 46 --------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQ 85
I W K + PS K+ S L+I + D+G+
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGK 178
Query: 86 YKCIATNQGGQVV-LTANLKVL 106
Y+C+ATN G ANL V
Sbjct: 179 YECVATNSAGVRYSSPANLYVR 200
Score = 74.1 bits (182), Expect = 2e-17
Identities = 24/141 (17%), Positives = 44/141 (31%), Gaps = 40/141 (28%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------- 43
+ + +L + ++ E D G + A NSAG S A L V+
Sbjct: 157 RIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHE 216
Query: 44 -----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
+KW +G + + P + + + +D Y
Sbjct: 217 IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR------NVLELTDVKDSANY 270
Query: 87 KCIATNQGGQVVLTANLKVLD 107
C+A + G + A + V
Sbjct: 271 TCVAMSSLGVIEAVAQITVKS 291
Score = 59.1 bits (143), Expect = 6e-12
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSY-VLRIS 76
F + G A + + W K K + ++ + + + VLRI
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQ 68
Query: 77 EAF-PEDEGQYKCIATNQGGQVVLTANLKVLD 107
P DE Y+C+A N G++ + A L VL
Sbjct: 69 PLRTPRDENVYECVAQNSVGEITVHAKLTVLR 100
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 79.1 bits (195), Expect = 6e-20
Identities = 20/137 (14%), Positives = 45/137 (32%), Gaps = 32/137 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------- 43
+ EG + L + ED+G++ +A ++ GQ + T L +
Sbjct: 51 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ 110
Query: 44 --------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ W ++ + + + + L+I DEG Y+C
Sbjct: 111 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCE 169
Query: 90 ATNQGGQVVLTANLKVL 106
+ + ++ V+
Sbjct: 170 GRVEARGEIDFRDIIVI 186
Score = 66.0 bits (161), Expect = 5e-15
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANLKV 105
+ + I ++ + KEG L I A ED G Y+C AT+ GQ T L++
Sbjct: 34 DWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 93
Query: 106 L 106
Sbjct: 94 Y 94
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 79.2 bits (195), Expect = 1e-19
Identities = 26/153 (16%), Positives = 40/153 (26%), Gaps = 46/153 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
SL++ + D G +T N G + T L V
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANA 128
Query: 44 ------------------TINIKWQKGDKI-----------IKPSKYFQMSKEGDSYVLR 74
+I+W K + ++ VL
Sbjct: 129 STVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA 188
Query: 75 ISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ D G+Y C +N GQ +A L VL
Sbjct: 189 LFNVTEADAGEYICKVSNYIGQANQSAWLTVLP 221
Score = 67.2 bits (164), Expect = 4e-15
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 34 VESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYK 87
+T + ++W K K K K + L + P D+G Y
Sbjct: 33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92
Query: 88 CIATNQGGQVVLTANLKVLD 107
C+ N+ G + T +L V++
Sbjct: 93 CVVENEYGSINHTYHLDVVE 112
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 75.8 bits (187), Expect = 1e-19
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKY--FQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ T + W G + I + F + D L I + +D G Y
Sbjct: 21 KVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80
Query: 89 IATNQGGQVVLTANLKVLDI 108
N+ G T N+ + I
Sbjct: 81 SLGNEFGSDSATVNIHIRSI 100
Score = 51.2 bits (123), Expect = 5e-10
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
+ +L++ ++D GL+TL N G +T + +++I
Sbjct: 56 IENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 75.0 bits (185), Expect = 2e-19
Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 6/76 (7%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQM-SKEGDSYVLRISEAFPEDEGQYKCI 89
S A V+ +W K I+ S E + L I + ED
Sbjct: 21 SDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80
Query: 90 ATNQGGQVVLTANLKV 105
A N G+ A L V
Sbjct: 81 AINIAGETSSHAFLLV 96
Score = 52.3 bits (126), Expect = 2e-10
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
E LV+ EDS ++A+N AG+ S A L V+
Sbjct: 55 YWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 75.1 bits (185), Expect = 2e-19
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
A + + KW K ++PSK +S G + L I + PEDEG Y +
Sbjct: 24 EQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD 83
Query: 92 NQGGQVVLTANLKVLDI 108
+ +A L L+I
Sbjct: 84 GYALSL--SAKLNFLEI 98
Score = 42.0 bits (99), Expect = 2e-06
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 10/59 (16%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPS 59
+S G LV++ ED G +T A +A+L I K+ PS
Sbjct: 56 ISHVGRFHKLVIDDVRPEDEGDYTFVPDGYAL--SLSAKLNFLEI--------KVSGPS 104
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 75.1 bits (185), Expect = 3e-19
Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 6/90 (6%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQM-SKEGDSYVLRIS 76
F N + R+ K ++ W + ++ +M E + L
Sbjct: 8 FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
D G Y C+A N+ G+ T L VL
Sbjct: 68 VVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 48.5 bits (116), Expect = 6e-09
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
E SL+ D+G + A N AG+ T +L V
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 74.7 bits (184), Expect = 3e-19
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQM-SKEGDSYVLRISEAFPEDEGQYKCI 89
R+ K T ++ WQ K ++P +M +E + L I D G Y CI
Sbjct: 25 KLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84
Query: 90 ATNQGGQVVLTANLKVLD 107
ATN+ GQ + L V
Sbjct: 85 ATNRAGQNSFSLELVVAA 102
Score = 47.7 bits (114), Expect = 1e-08
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ E SL++ D+G++T A N AGQ + L V
Sbjct: 59 LVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVA 101
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 77.5 bits (191), Expect = 4e-19
Identities = 30/141 (21%), Positives = 42/141 (29%), Gaps = 42/141 (29%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI------------------ 45
G + + D + A N G S A LT+
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 46 -------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
NI W K + S K+G L+I + ED+G+Y
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG---FLQIENSREEDQGKY 178
Query: 87 KCIATNQGGQVVLTA-NLKVL 106
+C+A N G A NL V
Sbjct: 179 ECVAENSMGTEHSKATNLYVK 199
Score = 53.3 bits (128), Expect = 4e-10
Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 9/94 (9%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPS--KYFQMSKEGDSYVLRI 75
+ N +V A +I W+K K + + +Y + + G +LRI
Sbjct: 9 IIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRI 68
Query: 76 SEAF-PEDEGQYKCIATNQGGQVVL-TANLKVLD 107
D+ Y+C+A N G V A L + +
Sbjct: 69 EPVRAGRDDAPYECVAENGVGDAVSADATLTIYE 102
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 76.0 bits (187), Expect = 4e-19
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGD-SYVLRIS 76
FT ++ S AR K + W K D +K S++FQ+ + + + L IS
Sbjct: 44 FTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTIS 103
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKV 105
E +D+ +Y C A N G+ TA L V
Sbjct: 104 EVCGDDDAKYTCKAVNSLGEATCTAELLV 132
Score = 49.1 bits (117), Expect = 9e-09
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
E SL ++ +D +T +AVNS G+ TA L V+T+
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETM 135
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 79.6 bits (196), Expect = 5e-19
Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 34/134 (25%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK--------------------- 43
+ L + + + D GL+ A + G E +A+L V
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIV 546
Query: 44 --------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEA-FPEDEGQYKCIATNQG 94
+I W++ ++ + ++ ++ G L I D+ Y C+A NQ
Sbjct: 547 TCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT---LIIENVERNSDQATYTCVAKNQE 603
Query: 95 GQVV-LTANLKVLD 107
G + ++V+
Sbjct: 604 GYSARGSLEVQVMV 617
Score = 76.9 bits (189), Expect = 5e-18
Identities = 27/137 (19%), Positives = 44/137 (32%), Gaps = 38/137 (27%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L + + +ED G++ N E++A L +
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFL 449
Query: 44 --------TINIKWQKGDKIIKPSKYFQMSKE-----GDSYVLRISEAFPEDEGQYKCIA 90
T I W+ K I + +Q+ + L I+ D G YKCIA
Sbjct: 450 KCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIA 509
Query: 91 TNQGGQVVLTANLKVLD 107
++ G +A L V
Sbjct: 510 KSKVGVAEHSAKLNVYG 526
Score = 76.1 bits (187), Expect = 9e-18
Identities = 29/136 (21%), Positives = 40/136 (29%), Gaps = 40/136 (29%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------- 43
+ + +L++ EDSG + NS G LTV
Sbjct: 301 VKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRP 360
Query: 44 -----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ W K K I S VLRI ED+G Y+C N
Sbjct: 361 AVFTCQYTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRN 410
Query: 93 QGGQVVLTANLKVLDI 108
+A LK+
Sbjct: 411 DRESAEASAELKLGGR 426
Score = 73.4 bits (180), Expect = 8e-17
Identities = 24/129 (18%), Positives = 31/129 (24%), Gaps = 34/129 (26%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT--------------------------- 44
N D +T A N G + + V
Sbjct: 585 NVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP 644
Query: 45 -----INIKWQKGDKIIKPSKYFQMSKEGDSY-VLRISEAFPEDEGQYKCIATNQGGQVV 98
+NI W + I S+ G VL I G + C A N G
Sbjct: 645 GGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704
Query: 99 LTANLKVLD 107
T L V
Sbjct: 705 FTTPLNVYV 713
Score = 72.3 bits (177), Expect = 2e-16
Identities = 24/136 (17%), Positives = 37/136 (27%), Gaps = 35/136 (25%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------ 43
+ L + +G FT A N AG + T L V
Sbjct: 671 RVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGS 730
Query: 44 ------------TINIKWQKGDKIIKPSKYFQMSKEG----DSYVLRISEAFPEDEGQYK 87
+ W+K P +Y + K + L + +EG Y
Sbjct: 731 DAKVECKADGFPKPQVTWKKAVGDT-PGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL 789
Query: 88 CIATNQGGQVVLTANL 103
C A N G + +
Sbjct: 790 CEAINGIGSGLSAVIM 805
Score = 45.7 bits (108), Expect = 4e-07
Identities = 20/122 (16%), Positives = 30/122 (24%), Gaps = 44/122 (36%)
Query: 18 EDSGLFTLRAVNSAGQVESTARLTVK---------------------------------T 44
+ LF A+ + G A
Sbjct: 9 KWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPM 68
Query: 45 INIKWQKGDK--IIKPSKYFQMSKEGDSYVLRISEAFPED------EGQYKCIATNQGGQ 96
I W + D + Q+S +G L ED Y C+A NQ G
Sbjct: 69 PEIIWIRSDGTAVGDVPGLRQISSDG---KLVFPPFRAEDYRQEVHAQVYACLARNQFGS 125
Query: 97 VV 98
++
Sbjct: 126 II 127
Score = 44.9 bits (106), Expect = 7e-07
Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 37/135 (27%)
Query: 11 VLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI------------------------ 45
+ E + ++ A N G + S +
Sbjct: 103 AEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLI 162
Query: 46 ---------NIKWQKGDKIIKPSKYFQMSK--EGDSYVLRISEAFPED-EGQYKCIATNQ 93
+ W ++ K S L I E PED Y+C ++
Sbjct: 163 PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHR 222
Query: 94 GGQVVLTANLKVLDI 108
+ K +
Sbjct: 223 LTGETRLSATKGRLV 237
Score = 41.1 bits (96), Expect = 2e-05
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ + + + +A G L AN D
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDAD 35
Score = 35.7 bits (82), Expect = 0.001
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+L ++ + + G + A+N G S +
Sbjct: 768 IRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 76.3 bits (188), Expect = 6e-19
Identities = 31/137 (22%), Positives = 46/137 (33%), Gaps = 35/137 (25%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAG-QVESTARLTV----------------- 42
S L + + + D G++ A N G VES L V
Sbjct: 55 YSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIE 114
Query: 43 -KTI------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
++ W KGD ++ + + + G LRI ED GQY+C+
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGS---LRIHNVQKEDAGQYRCV 171
Query: 90 ATNQGGQVV-LTANLKV 105
A N G L+V
Sbjct: 172 AKNSLGTAYSKLVKLEV 188
Score = 53.2 bits (128), Expect = 4e-10
Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 7/90 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
T VE A I W + +IK + S + +L I
Sbjct: 10 ITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLTILS 68
Query: 78 AFPEDEGQYKCIATNQGGQVVL-TANLKVL 106
D+G Y C A N G V L+V
Sbjct: 69 VEDSDDGIYCCTANNGVGGAVESCGALQVK 98
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVEST-ARLTVK 43
SL ++ +ED+G + A NS G S +L V+
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 73.9 bits (182), Expect = 7e-19
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
A L +KW G+ +++P + + +EG L + P+D G+Y C
Sbjct: 24 GAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF- 82
Query: 92 NQGGQVVLTANLKVLD 107
G +A L V
Sbjct: 83 ---GDQTTSATLTVTA 95
Score = 40.4 bits (95), Expect = 7e-06
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ EG LV+ +DSG ++ G ++A LTV
Sbjct: 56 LRQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLTVT 94
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 78.8 bits (194), Expect = 7e-19
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 31/137 (22%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------ 43
FE +L + EEDSG + A N G + T + VK
Sbjct: 269 KFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGE 328
Query: 44 ------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
++W + ++ + + + + Y+C +
Sbjct: 329 DGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD-TIIFRDTQISSRAVYQCNTS 387
Query: 92 NQGGQVVLTANLKVLDI 108
N+ G ++ A + VLD+
Sbjct: 388 NEHGYLLANAFVSVLDV 404
Score = 53.3 bits (128), Expect = 8e-10
Identities = 24/135 (17%), Positives = 30/135 (22%), Gaps = 38/135 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI---------------------- 45
EE G + A N G S RL V
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 46 ----------NIKWQK-GDKIIKPSKYFQMSKEGDSYVLRISEAFPED-EGQYKCIATNQ 93
I W + I K GD L S +D + Y C A
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD---LYFSNVMLQDMQTDYSCNARFH 194
Query: 94 GGQVVLTANLKVLDI 108
+ N L +
Sbjct: 195 FTHTIQQKNPFTLKV 209
Score = 46.0 bits (109), Expect = 3e-07
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 44 TINIKWQKGDKIIKPSK--YFQMSKEGDSYVLR--ISEAFPEDEGQYKCIATNQGGQVV- 98
+ W + + +K M + + V+ E EG+Y+C A N+ G +
Sbjct: 46 APSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALS 105
Query: 99 LTANLKV 105
L+V
Sbjct: 106 NRIRLQV 112
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 73.1 bits (180), Expect = 1e-18
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 33 QVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+ T L V W GD + + + + + A D G YK
Sbjct: 15 KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYK 74
Query: 88 CIATNQGGQVVLTANLKV 105
N+ G+ + V
Sbjct: 75 LKVKNELGEDEAIFEVIV 92
Score = 45.8 bits (109), Expect = 6e-08
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + +T S+ + DSG + L+ N G+ E+ + V+
Sbjct: 51 VDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 73.2 bits (180), Expect = 2e-18
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 7/90 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPS-KYFQMSKEGD-SYVLRI 75
F ++ + T + I W K K I P ++ + ++ D + L
Sbjct: 11 FEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHT 70
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ + +D+G Y +A N G++ T L V
Sbjct: 71 TASTLDDDGNYTIMAANPQGRISCTGRLMV 100
Score = 50.0 bits (120), Expect = 2e-09
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN 46
T SL + +D G +T+ A N G++ T RL V+ +N
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 72.7 bits (179), Expect = 2e-18
Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
F+ + A L I W + I+ ++ E L I +
Sbjct: 14 FSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC---EAGVAELHIQD 70
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKV 105
A PED G Y C+A N GQV +A + V
Sbjct: 71 ALPEDHGTYTCLAENALGQVSCSAWVTV 98
Score = 49.2 bits (118), Expect = 3e-09
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ E A L + ED G +T A N+ GQV +A +TV
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 73.2 bits (180), Expect = 2e-18
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 33/106 (31%)
Query: 29 NSAGQVESTARLTVK-----------------------------TINIKWQKGDKIIKPS 59
+S ++A LTV+ ++W KG + ++
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKGHETLRDG 61
Query: 60 KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ ++G L+I ED G+Y C+ G+ +A L V
Sbjct: 62 DRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTV 103
Score = 37.7 bits (88), Expect = 8e-05
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G L + ED+G + G+ ++A LTV+
Sbjct: 66 LRQDGARCELQIRGLVAEDAGEYLCM----CGKERTSAMLTVR 104
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 77.5 bits (190), Expect = 3e-18
Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 36/138 (26%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------ 43
+ + L +D G + A + + +
Sbjct: 619 NSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTT 678
Query: 44 ----------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
I W K ++ + + + L I EDEG Y
Sbjct: 679 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRRVRKEDEGLYT 736
Query: 88 CIATNQGGQVVLTANLKV 105
C A + G + A +
Sbjct: 737 CQACSVLGCAKVEAFFII 754
Score = 70.2 bits (171), Expect = 1e-15
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 38/133 (28%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------------- 43
++L ++ D GL+T A + +++ + V
Sbjct: 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 44 ----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
IKW K ++ + + +VL I E D G Y I TN
Sbjct: 349 RIPAKYLGYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNP 403
Query: 94 GGQVVLTANLKVL 106
+ + + ++
Sbjct: 404 ISKEKQSHVVSLV 416
Score = 67.1 bits (163), Expect = 1e-14
Identities = 20/154 (12%), Positives = 38/154 (24%), Gaps = 49/154 (31%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ L S L+ AVN G+ E V
Sbjct: 506 LIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQE 565
Query: 44 ------------TINIKWQKGDKIIKPSKYFQM--------------------SKEGDSY 71
N+ W K P ++ + D
Sbjct: 566 SVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL 625
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++ + A +D+G Y C+A ++ + ++
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQL 659
Score = 62.5 bits (151), Expect = 5e-13
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 26/113 (23%)
Query: 19 DSGLFTLRAVNSAGQVESTARLTVKTINIK-------------------------WQKGD 53
L+ +A + L + ++I+ W
Sbjct: 8 AVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQ 67
Query: 54 KIIKPSKYFQMSKEGD-SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ +G L I + D G YKC V+ ++
Sbjct: 68 SGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120
Score = 62.1 bits (150), Expect = 9e-13
Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 44/142 (30%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------------- 43
+ + +G+ A + +S + V
Sbjct: 185 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 244
Query: 44 ----------TINIKWQKGDKIIKPSKYFQMSKEGDS--------YVLRISEAFPEDEGQ 85
I+ W+ + K + S L I D+G
Sbjct: 245 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304
Query: 86 YKCIATNQGGQVVLTANLKVLD 107
Y C A++ + ++V +
Sbjct: 305 YTCAASSGLMTKKNSTFVRVHE 326
Score = 57.8 bits (139), Expect = 2e-11
Identities = 8/138 (5%), Positives = 18/138 (13%), Gaps = 40/138 (28%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------------- 44
+L + D+G + + +
Sbjct: 85 CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNK 144
Query: 45 ---------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ + I G C
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD---SKKGFTIPSYMISYAGMVFCE 201
Query: 90 ATNQGGQVVLTANLKVLD 107
A + V+
Sbjct: 202 AKINDESYQSIMYIVVVV 219
Score = 57.8 bits (139), Expect = 2e-11
Identities = 17/168 (10%), Positives = 38/168 (22%), Gaps = 69/168 (41%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT------------------------ 44
L + E D+G +T+ N + + + +++
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 45 ------------INIKWQKGDKIIKPSK-------------------------------- 60
+I W + ++
Sbjct: 442 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501
Query: 61 -YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
F + + + V + YKC A N+ G+ + V
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR 549
Score = 46.3 bits (109), Expect = 3e-07
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + +L + +ED GL+T +A + G + A ++
Sbjct: 713 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 34.7 bits (79), Expect = 0.003
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 75 ISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ + C+ T + + +L +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL 31
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 77.2 bits (190), Expect = 3e-18
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 34/128 (26%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L + +ED+G + A NS G+ + +LT
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+W K + Q+ + L I+ D G Y+C+A N+ G +
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIF 374
Query: 99 LTANLKVL 106
+A L V+
Sbjct: 375 SSAELSVI 382
Score = 60.2 bits (146), Expect = 3e-12
Identities = 25/142 (17%), Positives = 40/142 (28%), Gaps = 46/142 (32%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST---ARLTVKTIN----------------- 46
T +L + + D G +T N+ + L ++
Sbjct: 156 TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215
Query: 47 ---------------------IKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEG 84
I W++ D K I S + +L I ED G
Sbjct: 216 PAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAG 271
Query: 85 QYKCIATNQGGQVVLTANLKVL 106
Y+C+A N G+ V L
Sbjct: 272 SYECVAENSRGKNVAKGQLTFY 293
Score = 56.8 bits (137), Expect = 4e-11
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 37/133 (27%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI----------------------- 45
L+ N +D+G + A NS G + S A+L +
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC 124
Query: 46 ---------NIKWQKGDKIIKP-SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ W + ++ F + G+ L I++ D G Y C+ TN
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN---LYIAKVEKSDVGNYTCVVTNTVT 181
Query: 96 QVVLTANLKVLDI 108
+ L +
Sbjct: 182 NHKVLGPPTPLIL 194
Score = 46.4 bits (110), Expect = 2e-07
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTAN 102
+I+W+ + F+ S S ++ + +D G Y+CIATN G +V A
Sbjct: 37 KPHIRWKLNGTDVDIGMDFRYSVVDGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSREAK 95
Query: 103 LKV 105
L+
Sbjct: 96 LQF 98
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 72.0 bits (177), Expect = 3e-18
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 36 STARLTVK---TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
L + I KW K ++ S ++ ++G + L I+ A EDEG Y
Sbjct: 23 KEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82
Query: 93 QGGQVVLTANLKVLD 107
V L A + V+
Sbjct: 83 --YNVTLPAKVHVIS 95
Score = 41.5 bits (98), Expect = 3e-06
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G LV+ ED G + A V A++ V
Sbjct: 54 VVQKGRIHKLVIANALTEDEGDYV--FAPDAYNVTLPAKVHVI 94
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 72.4 bits (178), Expect = 3e-18
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVKTI-----NIKWQKGDKIIKPS-KYFQMSKEGD-SYVLRI 75
F + + + +L + + W++ +++++ + + ++ L I
Sbjct: 18 FIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLI 77
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ +D G Y A N+ G L V
Sbjct: 78 KDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Score = 47.4 bits (113), Expect = 2e-08
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+L++ ++D+G +T+ AVN AG RL V
Sbjct: 69 NTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 74.0 bits (182), Expect = 4e-18
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 36/132 (27%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+L + + D G++ A + V
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 44 ---------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
I W + K+I+ ++ + + G + L + D G Y C ATN+
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKA 175
Query: 95 GQVVLTANLKVL 106
G+ A L+V
Sbjct: 176 GEDEKQAFLQVF 187
Score = 54.0 bits (130), Expect = 2e-10
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ W ++ + + + ++ L+I DEG Y+C + + ++ V
Sbjct: 33 AVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 91
Score = 43.2 bits (102), Expect = 2e-06
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+G+ L + D G + RA N AG+ E A L V
Sbjct: 146 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 76.4 bits (188), Expect = 4e-18
Identities = 25/128 (19%), Positives = 42/128 (32%), Gaps = 34/128 (26%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L + ED G + A N G+ R+ +
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCV 317
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
++W + + + ++S LR S+ ED G Y+C+A N+ G V
Sbjct: 318 ASGKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVY 373
Query: 99 LTANLKVL 106
+A L V
Sbjct: 374 ASAELTVQ 381
Score = 55.6 bits (134), Expect = 1e-10
Identities = 24/142 (16%), Positives = 40/142 (28%), Gaps = 48/142 (33%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN-------------------- 46
T +L + T D G ++ A + + + ++
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD 216
Query: 47 ----------------------IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEG 84
IKW+K D SK+ +L I EDEG
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ-TSKWLSSEP-----LLHIQNVDFEDEG 270
Query: 85 QYKCIATNQGGQVVLTANLKVL 106
Y+C A N G+ + +
Sbjct: 271 TYECEAENIKGRDTYQGRIIIH 292
Score = 52.9 bits (127), Expect = 1e-09
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 39/135 (28%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI----------------------- 45
++ N +D+G + A N+ G V S A L +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123
Query: 46 ---------NIKWQKGDKIIKP---SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+ +W + + F G+ L I++ D G Y C AT+
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN---LYIAKTEASDLGNYSCFATSH 180
Query: 94 GGQVVLTANLKVLDI 108
+ + K +
Sbjct: 181 IDFITKSVFSKFSQL 195
Score = 48.7 bits (116), Expect = 4e-08
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTAN 102
+W+ +K + V+ + +D G Y+C+ATN G VV A+
Sbjct: 36 PATYRWKMNGTELKMGPDSRYRLVAGDLVI-SNPVKAKDAGSYQCVATNARGTVVSREAS 94
Query: 103 LKV 105
L+
Sbjct: 95 LRF 97
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 71.6 bits (176), Expect = 4e-18
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 36 STARLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
S A +T + ++WQ+G I S + ++ EG + L + E P D+G Y IA
Sbjct: 24 SPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA- 82
Query: 92 NQGGQVVLTANLKV 105
G + +LKV
Sbjct: 83 ---GSSKVKFDLKV 93
Score = 36.9 bits (86), Expect = 1e-04
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
++ EGT +L + D G + + AG + L V
Sbjct: 56 LATEGTRHTLTVREVGPADQGSYAVI----AGSSKVKFDLKVI 94
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 74.2 bits (182), Expect = 5e-18
Identities = 20/151 (13%), Positives = 36/151 (23%), Gaps = 51/151 (33%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI------------------ 45
+ + +ED G +T + + ST L
Sbjct: 57 NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 116
Query: 46 -------------------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLR 74
+I W K ++ I + + L
Sbjct: 117 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLL 174
Query: 75 ISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
I+E +D G Y+ I + G+ L
Sbjct: 175 ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205
Score = 57.3 bits (138), Expect = 1e-11
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYV--LRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
+ + +K I ++M + ++ + + + + EDEG Y + T L
Sbjct: 34 KVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVL 93
Query: 104 KV 105
Sbjct: 94 VG 95
Score = 43.0 bits (101), Expect = 3e-06
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
F+ +L++ ++D+G++ + + G+ +S +L +
Sbjct: 164 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 71.6 bits (176), Expect = 6e-18
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
L + + W K K I+ S+ + + EG +L I A +D G+Y C
Sbjct: 24 EDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE 83
Query: 92 NQGGQVVLTANLKV 105
L K
Sbjct: 84 ASKSTASLHVEEKA 97
Score = 38.1 bits (89), Expect = 6e-05
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ EGT A LV+ +D+G +T S TA L V+
Sbjct: 56 VVCEGTMAMLVIRGASLKDAGEYTCEVEASKS----TASLHVE 94
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 71.3 bits (175), Expect = 6e-18
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKCI 89
+T + ++W K K K K + L + P D+G Y C+
Sbjct: 24 NTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 83
Query: 90 ATNQGGQVVLTANLKVL 106
N+ G + T +L V+
Sbjct: 84 VENEYGSINHTYHLDVV 100
Score = 44.4 bits (105), Expect = 2e-07
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
SL++ + D G +T N G + T L V
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 71.2 bits (175), Expect = 7e-18
Identities = 24/74 (32%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 36 STARLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
TA T KT + W+KG ++ S Q S+EG + L IS D Y C
Sbjct: 24 GTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI- 82
Query: 92 NQGGQVVLTANLKV 105
GQ A L V
Sbjct: 83 ---GQAQSRAQLLV 93
Score = 40.8 bits (96), Expect = 5e-06
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
S EG T L ++ + DS +T GQ +S A+L V+
Sbjct: 56 PSQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLLVQ 94
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 75.2 bits (184), Expect = 1e-17
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 33/132 (25%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+ N T + + T A N G+ E + ++ V
Sbjct: 214 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 44 -TINIKWQKGDKIIKPSKYFQMSKEGDSY-------VLRISEAFPEDEGQYKCIATNQGG 95
+++W ++ + + + LR+++ + G Y +A N G
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 96 QVVLTANLKVLD 107
Q + +D
Sbjct: 334 QASASIMAAFMD 345
Score = 44.0 bits (103), Expect = 1e-06
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 1/60 (1%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
W + + + + + + C A N G+ ++ + V
Sbjct: 189 QAGWILTELEQ-SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 73.7 bits (181), Expect = 3e-17
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 36/133 (27%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSA-GQVESTARLTVKTI---------------------- 45
+L + + D G++ A G+++ + + +
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 46 -----------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
I W + K+I+ ++ + + G + L + D G Y C ATN+
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKA 271
Query: 95 GQVVLTANLKVLD 107
G+ A L+V
Sbjct: 272 GEDEKQAFLQVFV 284
Score = 72.9 bits (179), Expect = 5e-17
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 32/136 (23%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------- 43
+ EG + L + ED+G++ +A ++ GQ + T L +
Sbjct: 53 VQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQ 112
Query: 44 --------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ W ++ + + + ++ L+I DEG Y+C
Sbjct: 113 GEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN-NLQILNINKSDEGIYRCE 171
Query: 90 ATNQGGQVVLTANLKV 105
+ + ++ V
Sbjct: 172 GRVEARGEIDFRDIIV 187
Score = 59.4 bits (144), Expect = 4e-12
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 33 QVESTARLTVKTI----NIKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
V + T I +I W + I ++ + KEG L I A ED G Y+
Sbjct: 17 SVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYR 76
Query: 88 CIATNQGGQVV-LTANLKVL 106
C AT+ GQ T L++
Sbjct: 77 CQATDAKGQTQEATVVLEIY 96
Score = 45.2 bits (107), Expect = 5e-07
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+G+ L + D G + RA N AG+ E A L V
Sbjct: 242 ILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 69.7 bits (171), Expect = 3e-17
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
T N + + ++ I W K ++ + + + L I
Sbjct: 13 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN--LTIRR 70
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKV 105
EDEG Y C A + G + A +
Sbjct: 71 VRKEDEGLYTCQACSVLGCAKVEAFFII 98
Score = 45.8 bits (109), Expect = 6e-08
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +L + +ED GL+T +A + G + A ++
Sbjct: 58 VLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 69.8 bits (171), Expect = 4e-17
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 8/90 (8%)
Query: 22 LFTLRAVNSAGQVESTARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
++ V A LT + ++W K + + S + KE L +
Sbjct: 15 VYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPA 74
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
ED G+Y C + + V +
Sbjct: 75 VQLEDSGEYLCEI----DDESASFTVTVTE 100
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ E T LVL EDSG + ++ +TV
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCE----IDDESASFTVTVT 99
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 68.9 bits (169), Expect = 4e-17
Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
TA ++ ++ +W+ + + S ++ ++G ++L + G+ A
Sbjct: 21 ETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80
Query: 92 NQGGQVVLTANLKVLDI 108
N ANLKV ++
Sbjct: 81 N----TKSAANLKVKEL 93
Score = 40.4 bits (95), Expect = 6e-06
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G L+L+ +G + + A +S A L VK
Sbjct: 53 IIEDGKKHILILHNCQLGMTGEVSFQ----AANTKSAANLKVK 91
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 69.3 bits (170), Expect = 5e-17
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 23 FTLRAVNSAGQVESTARLTVK---TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAF 79
FT +TA L + ++W+KG + ++ + + ++G L+I +
Sbjct: 11 FTQDLKTKEASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLS 70
Query: 80 PEDEGQYKCIATNQGGQVVLTANLKVLD 107
D G+Y C+ GQ +A L V
Sbjct: 71 VADAGEYSCMC----GQERTSATLTVRA 94
Score = 39.3 bits (92), Expect = 2e-05
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDK 54
+ +GT L ++ D+G ++ GQ ++A LTV+ + ++ +G
Sbjct: 55 LKQDGTRCELQIHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEGSG 104
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 69.0 bits (169), Expect = 6e-17
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 36 STARLTVK------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ + W G K + S FQ +++G Y+L + EA P D G+
Sbjct: 24 ESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS 83
Query: 90 ATNQGGQVVLTANLKV 105
A+L V
Sbjct: 84 VRGLTS----KASLIV 95
Score = 39.7 bits (93), Expect = 1e-05
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G LV+ D+G S + S A L V+
Sbjct: 58 ATRQGRKYILVVREAAPSDAGEVVF----SVRGLTSKASLIVR 96
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 71.9 bits (176), Expect = 7e-17
Identities = 28/154 (18%), Positives = 40/154 (25%), Gaps = 47/154 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ SLV+ + D G +T N G + T L V
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 124
Query: 44 ------------------TINIKWQK------------GDKIIKPSKYFQMSKEGDSYVL 73
+I+W K G + K + L
Sbjct: 125 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRL 184
Query: 74 RISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
R++ D G+Y C ATN G L V
Sbjct: 185 RLANVSERDGGEYLCRATNFIGVAEKAFWLSVHG 218
Score = 66.9 bits (163), Expect = 6e-15
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 34 VESTARLTVK-----TINIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+T R T +I W K + + + + + L + P D G Y
Sbjct: 29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 88
Query: 88 CIATNQGGQVVLTANLKVLD 107
C+ N+ G + T L VL+
Sbjct: 89 CVVENKFGSIRQTYTLDVLE 108
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 68.6 bits (168), Expect = 9e-17
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
R V+ + +KW K + I+PS + +G +L I+ D+ +Y A
Sbjct: 24 GRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA- 82
Query: 92 NQGGQVVLTANLKVLD 107
G + L V
Sbjct: 83 ---GDEKCSTELFVRS 95
Score = 36.6 bits (85), Expect = 2e-04
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+G L +N D + + AG + + L V+
Sbjct: 56 FEHKGCQRILFINNCQMTDDSEYYVT----AGDEKCSTELFVR 94
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 72.4 bits (177), Expect = 1e-16
Identities = 22/140 (15%), Positives = 44/140 (31%), Gaps = 42/140 (30%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+L L +EDSG + N++ + + L V
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLV 141
Query: 44 ------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
+ I+W K ++ +S G ++ L + + ED G Y+C+ T
Sbjct: 142 CPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTH-LLVHDVALEDAGYYRCVLT 200
Query: 92 NQGGQ----VVLTANLKVLD 107
+ + L++
Sbjct: 201 FAHEGQQYNITRSIELRIKK 220
Score = 59.3 bits (143), Expect = 5e-12
Identities = 14/61 (22%), Positives = 20/61 (32%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
N+ W K D + L + A ED G Y C N ++ L+V
Sbjct: 56 NLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRV 115
Query: 106 L 106
Sbjct: 116 F 116
Score = 57.8 bits (139), Expect = 2e-11
Identities = 16/155 (10%), Positives = 36/155 (23%), Gaps = 56/155 (36%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------------- 43
T L+++ ED+G + + + +++
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISA 238
Query: 44 -------------------TINIKWQKGD----------KIIKPSKYFQMSKEGDSY--- 71
+ W + + + S+ ++Y
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298
Query: 72 VLRISEAFPEDEG-QYKCIATNQGGQVVLTANLKV 105
L ED +KC+ N L +K
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 30.8 bits (69), Expect = 0.065
Identities = 5/36 (13%), Positives = 10/36 (27%), Gaps = 1/36 (2%)
Query: 6 TTASLVLNTTYEEDSGL-FTLRAVNSAGQVESTARL 40
L+ + ED + F N+ +
Sbjct: 296 IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 72.3 bits (177), Expect = 1e-16
Identities = 30/155 (19%), Positives = 45/155 (29%), Gaps = 48/155 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ SLV+ + D G +T N G + T L V
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQ 232
Query: 44 ------------------TINIKWQKGDK------IIKPSKYFQMSKEGDSY-------V 72
+I+W K + + Y + K + V
Sbjct: 233 TAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEV 292
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
L + ED G+Y C+A N G +A L VL
Sbjct: 293 LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLP 327
Score = 67.7 bits (165), Expect = 6e-15
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 33 QVESTARLTVK-----TINIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQY 86
+T R T +I W K + + + + + L + P D G Y
Sbjct: 136 PAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195
Query: 87 KCIATNQGGQVVLTANLKVLD 107
C+ N+ G + T L VL+
Sbjct: 196 TCVVENKFGSIRQTYTLDVLE 216
Score = 53.1 bits (127), Expect = 1e-09
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
W K + PS+ + L++ A ED G Y C +
Sbjct: 41 TVWVKDGTGLVPSERVLVG----PQRLQVLNASHEDSGAYSCRQRLTQRVLC 88
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 70.6 bits (173), Expect = 2e-16
Identities = 27/132 (20%), Positives = 39/132 (29%), Gaps = 37/132 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI---------------------- 45
+V D G++ A N G+ S A L V +
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVME 132
Query: 46 ----------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
I W+K + + G L I+ D G+Y C+ TN G
Sbjct: 133 CQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK---LMITYTRKSDAGKYVCVGTNMVG 189
Query: 96 QVV-LTANLKVL 106
+ A L VL
Sbjct: 190 ERESEVAELTVL 201
Score = 46.7 bits (111), Expect = 1e-07
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKII-----KPSKYFQMSKEGDSYV 72
+ A L K T I+W KG + + P + + G +
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71
Query: 73 LRI--SEAFPEDEGQYKCIATNQGGQVV-LTANLKV 105
LRI DEG Y C+A N G+ V A+L+V
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 69.9 bits (171), Expect = 2e-16
Identities = 18/134 (13%), Positives = 43/134 (32%), Gaps = 32/134 (23%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAG-QVESTARLTVK------------------- 43
+ +++L + +D+G++ G Q E+T + +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 44 -----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
I W+ + + K + ++ L+I DEG Y+C
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRI 176
Query: 93 QGGQVVLTANLKVL 106
+ +++V+
Sbjct: 177 LARGEINFKDIQVI 190
Score = 56.0 bits (135), Expect = 4e-11
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 43 KTINIKWQKGD-KIIKPS--KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV- 98
K +I W + + + P+ + + + DS L I A +D G YKC+ T + G
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 99 LTANLKVL 106
T N+K+
Sbjct: 91 ATVNVKIF 98
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 67.9 bits (166), Expect = 3e-16
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 4/66 (6%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYV----LRISEAFPEDEGQYKCIATNQGGQVVLTA 101
+ W + ++ SK + + + L ++ + G Y IA N G T
Sbjct: 36 TLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTI 95
Query: 102 NLKVLD 107
N L
Sbjct: 96 NGHFLK 101
Score = 43.3 bits (102), Expect = 8e-07
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ L+ N ++G +TL A N G T
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 67.4 bits (165), Expect = 3e-16
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 36 STARLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
LT + W K + ++ S+ + +G + L + EA +D G+++C
Sbjct: 26 ERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE 85
Query: 92 NQGGQVVLTANLKVLD 107
+ V D
Sbjct: 86 GVSA----FFGVTVQD 97
Score = 37.4 bits (87), Expect = 1e-04
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G L+L +DSG F R V + +TV+
Sbjct: 58 VKMDGRKHRLILPEAKVQDSGEFECR----TEGVSAFFGVTVQ 96
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 69.1 bits (169), Expect = 3e-16
Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 37/138 (26%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------- 43
+ +N EDSG + + ++ A + VK
Sbjct: 52 NASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDA 110
Query: 44 ----------TINIKWQKGDKII-----KPSKYFQMSKEGDSYVLRISE-AFPEDEGQYK 87
W+K + + S F + + + L I ED G+Y+
Sbjct: 111 MMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYE 170
Query: 88 CIATNQGGQVVLTANLKV 105
C ATN G ++ L+V
Sbjct: 171 CNATNSIGSASVSTVLRV 188
Score = 57.6 bits (139), Expect = 8e-12
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 13/91 (14%)
Query: 23 FTLRAVNSAGQVESTARLTVK-------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRI 75
L + W K + ++ K + RI
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-----KNASNMEYRI 60
Query: 76 SEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
++ ED G+Y C+ A ++V
Sbjct: 61 NKPRAEDSGEYHCVYHFVSAPKA-NATIEVK 90
Score = 42.1 bits (99), Expect = 4e-06
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
++ E T ++N ED G + A NS G + L V+
Sbjct: 147 INKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 70.7 bits (173), Expect = 7e-16
Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 37/129 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK------------------------ 43
L+ TT ED G++T N G+ + + +LTV
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Query: 44 -------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
N+ W K + + ++ G L I D+G Y C ATN+ G
Sbjct: 331 CKVTGLPAPNVVWSHNAKPLSGGRA-TVTDSG----LVIKGVKNGDKGYYGCRATNEHGD 385
Query: 97 VVLTANLKV 105
++V
Sbjct: 386 KYFETLVQV 394
Score = 54.9 bits (132), Expect = 2e-10
Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 40/138 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI---------------------- 45
SLV D G + A AG S +
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 46 ---------NIKWQKGDKIIKPSKY-------FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I W+K P+ +G+ Y +++ D +Y C
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 90 ATN-QGGQVVLTANLKVL 106
A N + V+ ++
Sbjct: 183 AKNAAVDEEVVLVEYEIK 200
Score = 54.5 bits (131), Expect = 3e-10
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 47 IKWQKGDKIIKPSKYFQMSKE--GDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANL 103
+ K K + + ++++ L PEDEG Y C N G+ + L
Sbjct: 244 PNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKL 303
Query: 104 KVL 106
V+
Sbjct: 304 TVV 306
Score = 51.4 bits (123), Expect = 4e-09
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LTANL 103
+ W+K K ++ ++ D L DEG Y+C A G +
Sbjct: 37 VKYSWKKDGKSYNWQEHNAALRK-DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISF 95
Query: 104 KV 105
+
Sbjct: 96 RK 97
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 65.4 bits (160), Expect = 2e-15
Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 36 STARLTVK----TINIKWQKGDKII--KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
L + N+KW K + I P +++ EG ++L I A D +Y +
Sbjct: 23 ERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82
Query: 90 ATNQGGQVVLTANLKV 105
T +A L V
Sbjct: 83 TTGGQS----SAKLSV 94
Score = 38.5 bits (90), Expect = 4e-05
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ EG L++ + D+ +++ +S+A+L+V
Sbjct: 57 IRVEGKKHILIIEGATKADAAEYSVM----TTGGQSSAKLSVD 95
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 65.1 bits (159), Expect = 2e-15
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
++A L+ + + W K K + S ++ G + L + +A + G+Y C A
Sbjct: 27 ASATLSCEVAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG 86
Query: 92 NQGGQVVLTANLKV 105
Q + L+V
Sbjct: 87 GQQL----SFRLQV 96
Score = 36.6 bits (85), Expect = 2e-04
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ G T LV+ + ++G ++ AG + + RL V
Sbjct: 59 VEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRLQVA 97
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 68.0 bits (166), Expect = 2e-15
Identities = 31/137 (22%), Positives = 38/137 (27%), Gaps = 39/137 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI---------------------- 45
+ E+D G + A N GQ S A L + +
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 46 ----------NIKWQKGDKIIKPSKYFQMSKEG-----DSYVLRISEAFPEDEGQYKCIA 90
+ W K + K D L IS P DEG YKCIA
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 91 TNQGGQVV-LTANLKVL 106
N G A L V
Sbjct: 190 QNLVGTRESSYAKLIVQ 206
Score = 47.2 bits (112), Expect = 7e-08
Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 10/94 (10%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKP----SKYFQMSKEGDSYVL 73
+ + A L K I+W K + + S Q +
Sbjct: 12 IIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR 71
Query: 74 RISEAFPEDEGQYKCIATNQGGQVV-LTANLKVL 106
+ +D G+Y C+A N+ GQ V A+L++
Sbjct: 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIA 105
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 69.3 bits (169), Expect = 2e-15
Identities = 15/134 (11%), Positives = 29/134 (21%), Gaps = 39/134 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK---------------------- 43
+++ D+G +T + +A +T+
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEF 344
Query: 44 ----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
I W K + + Y + G+Y A N
Sbjct: 345 CFSVRFKAYPQIRCTWTFSRKSFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAEND 400
Query: 94 GGQVVLTANLKVLD 107
Q L +
Sbjct: 401 DAQFTKMFTLNIRS 414
Score = 63.5 bits (154), Expect = 2e-13
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 39/127 (30%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLTVK------------------------------TIN 46
E A N G+ +
Sbjct: 200 ELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFG 259
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYV------LRISEAFPEDEGQYKCIATNQGGQVVLT 100
+ W+ +K ++ YF+MS + +S D G Y C ++ Q +
Sbjct: 260 LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---S 316
Query: 101 ANLKVLD 107
A + +++
Sbjct: 317 ALVTIVE 323
Score = 56.2 bits (135), Expect = 8e-11
Identities = 12/121 (9%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 13 NTTYEEDSGLFTLRAVNSAG---------------------QVESTARLTVK-----TIN 46
N + S + + + + V ++ L V I+
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
W + +F + G + I + G+Y ++ + + +
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138
Query: 107 D 107
+
Sbjct: 139 N 139
Score = 53.1 bits (127), Expect = 1e-09
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 33/129 (25%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI--------------------- 45
S+V+ E +G + L + A ++++
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161
Query: 46 --------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
++W D + K + + E F D +C A N+ G+
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-KVLHELFGTD---IRCCARNELGRE 217
Query: 98 VLTANLKVL 106
L
Sbjct: 218 CTRLFTIDL 226
Score = 25.8 bits (56), Expect = 3.3
Identities = 1/25 (4%), Positives = 8/25 (32%)
Query: 74 RISEAFPEDEGQYKCIATNQGGQVV 98
+ +++ Y ++ +
Sbjct: 18 KNNDSSVGKSSSYPMVSESPEDLGC 42
Score = 25.0 bits (54), Expect = 6.0
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 77 EAFPEDEGQYKCIATNQG 94
E +D KC+ N
Sbjct: 1 ETGNQDLPVIKCVLINHK 18
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 65.4 bits (159), Expect = 3e-15
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 17/108 (15%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLTVKTI--------NIKWQKG---DKIIKPSKYFQMS 65
LF + +V K IKW KG D K K+ Q+
Sbjct: 4 GSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK 63
Query: 66 KEGD------SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ + ++ ++I +A G Y+C T + + +L+V +
Sbjct: 64 ETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
Score = 39.2 bits (91), Expect = 3e-05
Identities = 4/40 (10%), Positives = 10/40 (25%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
T + + + +G + + L V
Sbjct: 71 RVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 65.1 bits (159), Expect = 3e-15
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 6/80 (7%)
Query: 33 QVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYK 87
+V L V + W KG + S+ + V + +A D G+Y+
Sbjct: 37 KVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRV-HVRTSDFDTVFFVRQAARSDSGEYE 95
Query: 88 CIATNQGGQVVLTANLKVLD 107
+ + T ++V++
Sbjct: 96 LSVQIENMKDTATIRIRVVE 115
Score = 39.7 bits (93), Expect = 2e-05
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ + DSG + L + +T R+ V
Sbjct: 72 VRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 64.4 bits (157), Expect = 3e-15
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSY-----VLRISEAFPEDEGQYKCIATNQGGQVVLT 100
++W I+ SKY ++ L++ + G Y IA N+ G+
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 101 ANLKVLD 107
+ +
Sbjct: 92 ISAHFMG 98
Score = 40.5 bits (95), Expect = 7e-06
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
L L+ ++G +TL A N G+ E
Sbjct: 62 GCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 68.5 bits (167), Expect = 4e-15
Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 39/138 (28%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------------- 44
A+L +++ DSG+F A N+ G T L V
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENV 331
Query: 45 ------------INIKWQKGDKIIKPSKYFQMSKEGDSYV-----LRISEAFPEDEGQYK 87
+ +W ++ E +S + L ++ + G Y
Sbjct: 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYT 391
Query: 88 CIATNQGGQVVLTANLKV 105
+ +N + N+ V
Sbjct: 392 FLVSNSDVNAAIAFNVYV 409
Score = 66.2 bits (161), Expect = 2e-14
Identities = 19/137 (13%), Positives = 31/137 (22%), Gaps = 36/137 (26%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---------------------- 44
+ L L + G +T NS + V T
Sbjct: 374 VSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGF 433
Query: 45 --INIKWQKGDKI-------IKPSKYFQMSKEGDSY-----VLRISEAFPEDEGQYKCIA 90
I W + P ++ G + I + + G +C A
Sbjct: 434 PEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKA 493
Query: 91 TNQGGQVVLTANLKVLD 107
N G+ N
Sbjct: 494 YNDVGKTSAYFNFAFKG 510
Score = 60.8 bits (147), Expect = 2e-12
Identities = 22/148 (14%), Positives = 37/148 (25%), Gaps = 41/148 (27%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT--------------- 44
+ ++ + V S L V+
Sbjct: 162 FIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASY 221
Query: 45 --------------------INIKWQKGDKIIKPSKYFQMSKEGD-----SYVLRISEAF 79
+ W++ + K + + GD L IS A
Sbjct: 222 LLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281
Query: 80 PEDEGQYKCIATNQGGQVVLTANLKVLD 107
D G + C A N G +T L+V+D
Sbjct: 282 VNDSGVFMCYANNTFGSANVTTTLEVVD 309
Score = 44.3 bits (104), Expect = 1e-06
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 26/105 (24%)
Query: 18 EDSGLFT----LRAVNSAGQVESTARLTVK---TINIKWQKGDKIIKPSKYFQM------ 64
+ F L G + + +I+ K D I++ ++
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHP--GKSDLIVRVGDEIRLLCTDPG 62
Query: 65 -----------SKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ E +A + G+Y C + +
Sbjct: 63 FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSI 107
Score = 40.4 bits (94), Expect = 2e-05
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT---INIKWQ 50
F ++++ + +G +A N G+ + K I
Sbjct: 467 PPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPH 519
Score = 38.5 bits (89), Expect = 1e-04
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 29/131 (22%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQ-----VESTARLTVKT-------------- 44
E + ++G +T + V A+L +
Sbjct: 76 ENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVR 135
Query: 45 --------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
N + P + + + ++ S C +G
Sbjct: 136 CPLTDPEVTNYSLKGCQGKPLPKDL-RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194
Query: 97 VV-LTANLKVL 106
V+ LKV
Sbjct: 195 VLSEKFILKVR 205
Score = 26.6 bits (58), Expect = 2.0
Identities = 3/31 (9%), Positives = 7/31 (22%), Gaps = 4/31 (12%)
Query: 81 EDEGQYKCI----ATNQGGQVVLTANLKVLD 107
+ C+ Q G + +
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPS 35
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 64.6 bits (157), Expect = 4e-15
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 17 EEDSGLFTLRAVNSAGQVESTARLTVKTI--------NIKWQKG---DKIIKPSKYFQMS 65
++ GLF +R + V + + + +KW KG D K ++ Q+
Sbjct: 1 DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60
Query: 66 KEGD------SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
D + L I++A P G Y+C + + NL V +
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 37.7 bits (87), Expect = 1e-04
Identities = 6/37 (16%), Positives = 9/37 (24%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L + +G + S LTV
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 66.5 bits (162), Expect = 4e-15
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 40/137 (29%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+ + ED+G +T G ++ +
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128
Query: 44 --------TINIKWQKGDKIIKPSKYFQMSKEGDSYV-------LRISEAFPEDEGQYKC 88
W K ++ + + SYV L D G+Y C
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188
Query: 89 IATNQGGQVVLTANLKV 105
A N G + + +++
Sbjct: 189 EARNGYGTPMTSNAVRM 205
Score = 51.5 bits (123), Expect = 2e-09
Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSY--------VLRISEAFPEDEGQYKCIATNQGGQV 97
++W+ + + ED G Y C+ + +GG
Sbjct: 35 RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNS 94
Query: 98 VLTANLKV 105
+K+
Sbjct: 95 YGEVKVKL 102
Score = 39.9 bits (93), Expect = 3e-05
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
TT LV + D+G ++ A N G ++ + ++
Sbjct: 166 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 67.7 bits (165), Expect = 6e-15
Identities = 29/127 (22%), Positives = 38/127 (29%), Gaps = 40/127 (31%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+L++ EDSG + NS G LTV
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ W K K I S VLRI ED+G Y+C N
Sbjct: 331 YTGNPIKTVSWMKDGKAIGHS----------ESVLRIESVKKEDKGMYQCFVRNDRESAE 380
Query: 99 LTANLKV 105
+A LK+
Sbjct: 381 ASAELKL 387
Score = 58.8 bits (142), Expect = 1e-11
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSY--VLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+W K + + ++ L I +A ED G+Y C+ N G + L
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303
Query: 105 VL 106
V
Sbjct: 304 VT 305
Score = 44.5 bits (105), Expect = 1e-06
Identities = 20/128 (15%), Positives = 33/128 (25%), Gaps = 38/128 (29%)
Query: 17 EEDSGLFTLRAVNSAGQVES-TARLTVKTI------------------------------ 45
E + ++ A N G + S +
Sbjct: 74 EVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 133
Query: 46 ---NIKWQKGDKIIKPSKYFQMSK--EGDSYVLRISEAFPED-EGQYKCIATNQ-GGQVV 98
+ W ++ K S L I E PED Y+C ++ G+
Sbjct: 134 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 193
Query: 99 LTANLKVL 106
L+A L
Sbjct: 194 LSATKGRL 201
Score = 41.1 bits (96), Expect = 2e-05
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 12/71 (16%)
Query: 44 TINIKWQKGDK--IIKPSKYFQMSKEGDSYVLRISEAFPED------EGQYKCIATNQGG 95
I W + D + Q+S +G L ED Y C+A NQ G
Sbjct: 33 MPEIIWIRSDGTAVGDVPGLRQISSDGK---LVFPPFRAEDYRQEVHAQVYACLARNQFG 89
Query: 96 QVV-LTANLKV 105
++ +++
Sbjct: 90 SIISRDVHVRA 100
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 67.7 bits (165), Expect = 7e-15
Identities = 25/135 (18%), Positives = 37/135 (27%), Gaps = 36/135 (26%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT--------------------- 44
T L ++ E++SGL+T +A NSA T T+
Sbjct: 424 HTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKD 483
Query: 45 ------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
W + + S Q+S + L + D Y C N
Sbjct: 484 AVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRT--LTLFNVTRNDARAYVCGIQN 541
Query: 93 QGGQVV-LTANLKVL 106
L VL
Sbjct: 542 SVSANRSDPVTLDVL 556
Score = 58.0 bits (140), Expect = 2e-11
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 36/135 (26%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT--------------------- 44
+T L + +SG +T +A NS + T T+
Sbjct: 246 STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDED 305
Query: 45 ------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
W ++ + S Q+S + + L + D G Y+C N
Sbjct: 306 AVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRT--LTLLSVTRNDVGPYECGIQN 363
Query: 93 -QGGQVVLTANLKVL 106
L VL
Sbjct: 364 ELSVDHSDPVILNVL 378
Score = 58.0 bits (140), Expect = 2e-11
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 43/129 (33%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK------------------------ 43
+L L D+ + NS S L V
Sbjct: 521 TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLS 580
Query: 44 -------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ W+ + ++ VL I++ P + G Y C +N
Sbjct: 581 CHSASNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYACFVSNLATG 629
Query: 97 VVLTANLKV 105
+ +
Sbjct: 630 RNNSIVKSI 638
Score = 56.9 bits (137), Expect = 5e-11
Identities = 19/138 (13%), Positives = 29/138 (21%), Gaps = 43/138 (31%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------- 43
+ +L L + D G + N S L V
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 44 ---------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
W I + ++ L IS ++ G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTC 443
Query: 89 IATNQGGQVVLTANLKVL 106
A N T +
Sbjct: 444 QANNSASGHSRTTVKTIT 461
Score = 54.6 bits (131), Expect = 3e-10
Identities = 16/137 (11%), Positives = 27/137 (19%), Gaps = 43/137 (31%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK---------------- 43
+ +L L D+ + N S + L V
Sbjct: 157 LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216
Query: 44 ---------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
W + ++ L I + G Y C
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-----------ELFIPNITVNNSGSYTC 265
Query: 89 IATNQGGQVVLTANLKV 105
A N + T +
Sbjct: 266 QAHNSDTGLNRTTVTTI 282
Score = 53.4 bits (128), Expect = 9e-10
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 35/135 (25%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVES----------------------------T 37
ASL++ + D+G +TL + S E
Sbjct: 69 PNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDA 128
Query: 38 ARLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
T + W ++ + S Q+S + L + D YKC N
Sbjct: 129 VAFTCEPETQDATYLWWVNNQSLPVSPRLQLSN--GNRTLTLFNVTRNDTASYKCETQNP 186
Query: 94 -GGQVVLTANLKVLD 107
+ + L VL
Sbjct: 187 VSARRSDSVILNVLY 201
Score = 38.8 bits (90), Expect = 1e-04
Identities = 5/37 (13%), Positives = 13/37 (35%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
T L + ++G + N A ++ ++
Sbjct: 603 TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 63.5 bits (155), Expect = 8e-15
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPS-KYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
RLTV+ +KW K + I+ S + G L IS+ D+ Y+C+
Sbjct: 32 HKIRLTVELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 91
Query: 91 TNQGGQVVLTANLKVLD 107
+ + L V +
Sbjct: 92 GGEKC----STELFVKE 104
Score = 36.2 bits (84), Expect = 3e-04
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
G +L ++ D + G + + L VK
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCV----VGGEKCSTELFVK 103
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 66.8 bits (163), Expect = 1e-14
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 32/133 (24%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK------------------- 43
+ +++L + +D+G++ G T + +
Sbjct: 58 DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117
Query: 44 -----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
I W+ + + K + ++ L+I DEG Y+C
Sbjct: 118 AVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRI 176
Query: 93 QGGQVVLTANLKV 105
+ +++V
Sbjct: 177 LARGEINFKDIQV 189
Score = 66.1 bits (161), Expect = 2e-14
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 36/134 (26%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L + + D G + A + + V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVT 215
Query: 44 ---------TINIKWQKGDKIIKPSKYFQMS--KEGDSYVLRISEAFPEDEGQYKCIATN 92
+ W K + I+ + DS L I DE +Y CIA N
Sbjct: 216 LVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAEN 275
Query: 93 QGGQVVLTANLKVL 106
+ G+ + +LKV
Sbjct: 276 KAGEQDASIHLKVF 289
Score = 52.6 bits (126), Expect = 1e-09
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 43 KTINIKWQKGDKII---KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ-GGQVV 98
K +I W + + + + DS L I A +D G YKC+ T + G Q
Sbjct: 31 KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE 90
Query: 99 LTANLKVL 106
T N+K+
Sbjct: 91 ATVNVKIF 98
Score = 39.9 bits (93), Expect = 4e-05
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
F ++ L + + D + A N AG+ +++ L V
Sbjct: 248 IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 63.2 bits (154), Expect = 1e-14
Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 23 FTLRAVNSAGQVESTARLTVKTI-----NIKWQK-GDKIIKPSKYFQMSKEGDSYVLRIS 76
N V+ TA L K I W K G + ++G L+I
Sbjct: 11 ILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGT---LQIK 67
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
D G Y C+AT+ G+ +A L V +
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVTE 98
Score = 41.2 bits (97), Expect = 4e-06
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+L + D+G +T A +S+G+ +A L V
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 62.7 bits (153), Expect = 1e-14
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 36 STARLTVK----TINIKWQKGDKIIKPSKYF----QMSKEGDSYVLRISEAFPEDEGQYK 87
+ V+ + W K + F + K+G ++L S+ ED G+Y+
Sbjct: 24 DRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ 83
Query: 88 CIATNQGGQVVLTANLKV 105
I A L V
Sbjct: 84 VITNGGQC----EAELIV 97
Score = 38.1 bits (89), Expect = 5e-05
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+G L+ + +ED G + + + A L V+
Sbjct: 60 FKKDGKRHILIFSDVVQEDRGRYQVITNGG----QCEAELIVE 98
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 62.9 bits (153), Expect = 2e-14
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 23 FTLRAVNSAGQVESTARLTVKTI-----NIKWQKGDKIIKPS-KYFQMSKEGDSYVLRIS 76
VN V+ T L+ I W+K ++ + + G L+I
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV---LQIR 67
Query: 77 EAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
A D G+Y CIA+ G+ +A ++V +
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98
Score = 42.4 bits (100), Expect = 2e-06
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L + D+G +T A +G+ +A + V+
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 66.4 bits (162), Expect = 2e-14
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Query: 23 FTLRAVNSAGQVESTARLTVKTIN-----IKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
F ++ + +A + I + W K D+ +K S + G+ Y L I+
Sbjct: 485 FIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 544
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKV 105
+D+G+Y A N G L V
Sbjct: 545 VKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 46.8 bits (111), Expect = 1e-07
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ G L +N +D G +T+RA NS G E L V
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 64.7 bits (157), Expect = 2e-14
Identities = 23/131 (17%), Positives = 36/131 (27%), Gaps = 35/131 (26%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------ 43
AS+ + D G + + + G LTV
Sbjct: 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKC 143
Query: 44 -------TINIKWQK-GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ +WQK D P+ + V+ + A E G Y C N+ G
Sbjct: 144 EPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP---VISVKNASSEYSGTYSCTVQNRVG 200
Query: 96 QVVLTANLKVL 106
L V+
Sbjct: 201 SDQCMLRLDVV 211
Score = 37.7 bits (87), Expect = 2e-04
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
E T+ + + E SG ++ N G + RL V
Sbjct: 169 WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 64.5 bits (157), Expect = 3e-14
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKY--FQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ +T + + I W + +++ S Y ++ + L ++ D G Y C
Sbjct: 34 NQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNC 93
Query: 89 IATNQGGQVVLTANLKVLD 107
A N+ GQ L L D
Sbjct: 94 TAVNRIGQESLEFILVQAD 112
Score = 41.0 bits (96), Expect = 1e-05
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ + L + E D G + AVN GQ L
Sbjct: 72 TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110
Score = 25.2 bits (55), Expect = 5.5
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L TTY L A+N G E +A KT
Sbjct: 180 LKPETTYA-----VRLAALNGKGLGEISAASEFKT 209
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 64.1 bits (156), Expect = 3e-14
Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 44/139 (31%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI--------------------- 45
+L + D G ++ + + ++
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 46 -------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
+I+W+K + + + S VL+I EDEG Y
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS----GAVLKIFNIQLEDEGIY 180
Query: 87 KCIATNQGGQVVLTANLKV 105
+C A N G+ A + V
Sbjct: 181 ECEAENIRGKDKHQARIYV 199
Score = 51.0 bits (122), Expect = 3e-09
Identities = 8/64 (12%), Positives = 22/64 (34%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
++ +W + + + + + L I+ D+G Y C ++ + +
Sbjct: 38 DDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSK 97
Query: 103 LKVL 106
L
Sbjct: 98 FIPL 101
Score = 40.3 bits (94), Expect = 2e-05
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L + ED G++ A N G+ + AR+ V+
Sbjct: 166 VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 61.6 bits (150), Expect = 4e-14
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+I W + + S +++ E + + ++ P D G Y C+ ++ G ++ V
Sbjct: 33 SINWLRDGVQLAESNRTRITGE----EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNV 88
Query: 106 LD 107
D
Sbjct: 89 SD 90
Score = 38.5 bits (90), Expect = 3e-05
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + + DSGL+ + +G + + V
Sbjct: 55 EVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVS 89
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 61.3 bits (149), Expect = 7e-14
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQM-SKEGDSYVLRISEAFPEDEGQYKCI 89
S+A + + W + ++ ++ ++ G +VL + + +D G
Sbjct: 29 SSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88
Query: 90 ATNQGGQVVLTANLKVLD 107
A G +A L+V +
Sbjct: 89 A----GDQRASAALRVTE 102
Score = 37.8 bits (88), Expect = 1e-04
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
G L L +DSG AG ++A L V
Sbjct: 66 PGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRVT 101
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 64.0 bits (155), Expect = 1e-13
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 39/129 (30%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
+++ D+G +T + +A +T+
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPS---QSALVTIVEKGFINATNSSEDYEIDQYEEFCFS 347
Query: 44 -------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
I W K + + Y + G+Y A N Q
Sbjct: 348 VRFKAYPQIRCTWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQ 403
Query: 97 VVLTANLKV 105
L +
Sbjct: 404 FTKMFTLNI 412
Score = 60.5 bits (146), Expect = 2e-12
Identities = 21/133 (15%), Positives = 32/133 (24%), Gaps = 39/133 (29%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT----------------------IN 46
S+ ++ G + A N Q L ++ +
Sbjct: 379 SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPS 438
Query: 47 IKWQKGD--------------KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
W+K K ++ S L +SEA KC A N
Sbjct: 439 WTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS-TLNMSEA--IKGFLVKCCAYN 495
Query: 93 QGGQVVLTANLKV 105
G T L
Sbjct: 496 SLGTSCETILLNS 508
Score = 59.7 bits (144), Expect = 5e-12
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 39/135 (28%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK------------------------ 43
+E A N G+ + + +
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKA 251
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSY------VLRISEAFPEDEGQYKCIATN 92
+ W+ +K ++ YF+MS + +S D G Y C ++
Sbjct: 252 VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSK 311
Query: 93 QGGQVVLTANLKVLD 107
Q +A + +++
Sbjct: 312 HPSQ---SALVTIVE 323
Score = 53.9 bits (129), Expect = 5e-10
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 6/77 (7%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
++ L V I+ W + +F + G + I + G+Y
Sbjct: 64 ASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV-SMVILKMTETQAGEYLLFI 122
Query: 91 TNQGGQVVLTANLKVLD 107
++ + + + +
Sbjct: 123 QSEATNYTILFTVSIRN 139
Score = 50.5 bits (120), Expect = 8e-09
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 33/122 (27%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK---------------------- 43
S+V+ E +G + L + A ++++
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALV 160
Query: 44 -------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
++W D + K + +C A N+ G+
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCK----EESPAVVKKEEKVLHELFGTDIRCCARNELGR 216
Query: 97 VV 98
Sbjct: 217 EC 218
Score = 37.4 bits (86), Expect = 3e-04
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
F +S LN + L A NS G T L
Sbjct: 468 VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSP 509
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 63.1 bits (153), Expect = 2e-13
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 37/139 (26%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------- 43
+G+++ L N +++G + + L VK
Sbjct: 47 DGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQD 106
Query: 44 ------------TINIKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+ + + + + S I A Y+C A
Sbjct: 107 ALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSA 163
Query: 91 TNQGGQVV-LTANLKVLDI 108
G +V+ ++ LKV +
Sbjct: 164 LMGGRKVMSISIRLKVQKV 182
Score = 57.3 bits (138), Expect = 3e-11
Identities = 18/137 (13%), Positives = 40/137 (29%), Gaps = 38/137 (27%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT----------------------- 44
++ S + A+ +V S + RL V+
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA 204
Query: 45 ------------INIKWQKGDK--IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
++ Q + I F ++ L + + + G Y C+A
Sbjct: 205 QIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVA 264
Query: 91 TNQGGQVVLTANLKVLD 107
+N G+ + +V++
Sbjct: 265 SNVQGKHSTSMFFRVVE 281
Score = 50.0 bits (119), Expect = 1e-08
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+++W PS ++ + +G S +L + A ++ G Y+C +L V
Sbjct: 31 SVEWDG-----PPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYV 85
Query: 106 LD 107
D
Sbjct: 86 KD 87
Score = 38.4 bits (89), Expect = 1e-04
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +L L+ + +G ++ A N G+ ++ V
Sbjct: 239 NRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 60.0 bits (145), Expect = 3e-13
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 7/69 (10%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSY-------VLRISEAFPEDEGQYKCIATNQGGQVV 98
+++W ++ + + + LR+++ + G Y +A N GQ
Sbjct: 31 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 90
Query: 99 LTANLKVLD 107
+ +D
Sbjct: 91 ASIMAAFMD 99
Score = 40.7 bits (95), Expect = 9e-06
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L LN ++G +TL A N GQ ++
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 60.8 bits (147), Expect = 5e-13
Identities = 15/126 (11%), Positives = 38/126 (30%), Gaps = 32/126 (25%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVE-----------------STARLTVKTI 45
++ L++ EDS + + +V+ + LT+++
Sbjct: 63 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESP 122
Query: 46 -----NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+++ + L +S+ +D G + C +V
Sbjct: 123 PGSSPSVQCRSPRGKNIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 101 ANLKVL 106
++ VL
Sbjct: 173 IDIVVL 178
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 60.7 bits (147), Expect = 8e-13
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 55/150 (36%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKTI----------------- 45
G T+ L+ N + +D+G + R N+ S ++L V I
Sbjct: 61 NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQ 120
Query: 46 ----------------------------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
+ +W K + + + +
Sbjct: 121 ICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMVPY 171
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
E +G Y C N ++D
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDSKKVEIIID 201
Score = 51.8 bits (124), Expect = 1e-09
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 15/78 (19%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+L + + +W K +K I G++ L + +D G Y C
Sbjct: 34 QFVKLCCRATGHPFVQYQWFKMNKEIP---------NGNTSELIFNAVHVKDAGFYVCRV 84
Query: 91 TNQGGQVV-LTANLKVLD 107
N + L V D
Sbjct: 85 NNNFTFEFSQWSQLDVCD 102
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 57.9 bits (140), Expect = 1e-12
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ W + PS+ M G +L I P D G Y C +N TA L V
Sbjct: 42 TLVWTRLHNGKLPSR--AMDFNG---ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 38.2 bits (89), Expect = 5e-05
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L + D+G + N + TA L V+
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 58.9 bits (142), Expect = 1e-12
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 47 IKWQKGDKIIKPSKYFQMS-------------KEGDSYVLRISEAFPEDEGQYKCIATNQ 93
I+W + + + + I ED G Y+C A+N
Sbjct: 53 IQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASND 112
Query: 94 GGQVVLTANLKVLDI 108
+ LT +V +
Sbjct: 113 PDRNHLTRAPRVKWV 127
Score = 41.2 bits (96), Expect = 6e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
+++ ++T EED+G + RA N + T VK +
Sbjct: 89 ASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWV 127
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 57.1 bits (138), Expect = 2e-12
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
I W + + S +++ E + + ++ P D G Y C+ ++ G ++ V
Sbjct: 40 INWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 35.9 bits (83), Expect = 4e-04
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ + + DSGL+ + +G + + V
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 58.2 bits (140), Expect = 2e-12
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 52 GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ + ++ D + + A EDEG Y N G+ + +KV+D
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
Score = 40.1 bits (93), Expect = 2e-05
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ + + +ED G++T+ N G+ + + V
Sbjct: 96 VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 59.6 bits (144), Expect = 2e-12
Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 41/141 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK---------------------- 43
+++ + ++ +D+G +T GQ + +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 44 -----------TINIKWQKGDKIIKPSKYFQMSKEGDSYV--------LRISEAFPEDEG 84
W K + + + +S L D G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 85 QYKCIATNQGGQVVLTANLKV 105
+Y C A N G + + +
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHM 203
Score = 48.4 bits (115), Expect = 3e-08
Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGD--------SYVLRISEAFPEDEGQYKCIATNQGGQV 97
++W+ + S + S +D G+Y C+ + +GGQ
Sbjct: 32 RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQN 91
Query: 98 VLTANLKV 105
++ +
Sbjct: 92 YGEVSIHL 99
Score = 37.6 bits (87), Expect = 2e-04
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ + + L+ + DSG + +A N G + +
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 56.7 bits (137), Expect = 3e-12
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISE 77
+ A T LT + + I W K + S VL + E
Sbjct: 13 LVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------PSPVLILPE 63
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKV 105
P+D+G Y C+AT+ + + +
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 37.8 bits (88), Expect = 6e-05
Identities = 6/38 (15%), Positives = 18/38 (47%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
+ L+L +D G ++ A +S+ + + +++
Sbjct: 54 PPSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 59.6 bits (144), Expect = 4e-12
Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 35/135 (25%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------- 43
E ++L +++G + + +T L VK
Sbjct: 47 ESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQE 106
Query: 44 ------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
++ + K + I +A D Y C
Sbjct: 107 AVLPCLITDPALKDSVSLMREGGRQVLRK--TVYFFSPWRGFIIRKAKVLDSNTYVCKTM 164
Query: 92 NQGGQVV-LTANLKV 105
G + LKV
Sbjct: 165 VNGRESTSTGIWLKV 179
Score = 58.8 bits (142), Expect = 8e-12
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 38/138 (27%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT---------------------- 44
++ DS + + + + + S L V
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEA 203
Query: 45 -------------INIKWQKGDKIIKPSKY--FQMSKEGDSYVLRISEAFPEDEGQYKCI 89
N+ ++GD ++ FQ + L ++ +D G Y C+
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263
Query: 90 ATNQGGQVVLTANLKVLD 107
A+N G T N +V++
Sbjct: 264 ASNDVGTRTATMNFQVVE 281
Score = 50.3 bits (120), Expect = 8e-09
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+++W S Y+ + E L A ++ G Y+C T +L V
Sbjct: 31 SVEWDG-----PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYV 85
Query: 106 LD 107
D
Sbjct: 86 KD 87
Score = 38.8 bits (90), Expect = 1e-04
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
++ +L LN +D+G+++ A N G +T V
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVV 280
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 58.4 bits (141), Expect = 5e-12
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 40/133 (30%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT--------------------- 44
+ L + + D+G + S + ++
Sbjct: 67 VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNL 126
Query: 45 ----------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
+++ W + + + G L + + C A N
Sbjct: 127 SCQAQGPPEPVDLLWLQDAVPLATA-----PGHGPQRSLHVPG--LNKTSSFSCEAHNAK 179
Query: 95 GQVV-LTANLKVL 106
G TA + VL
Sbjct: 180 GVTTSRTATITVL 192
Score = 48.4 bits (115), Expect = 2e-08
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSY---------VLRISEAFPEDEGQYKCIATNQG 94
+ W + +I++ + Q LRI+ D GQY+C+
Sbjct: 32 PPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGH 91
Query: 95 GQVV-LTANLKV 105
V + +
Sbjct: 92 QTFVSQPGYVGL 103
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 58.1 bits (140), Expect = 6e-12
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 34/131 (25%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK----------------- 43
+ T LV+ G + R +V L+V
Sbjct: 60 IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDF 119
Query: 44 -------------TINIKWQKGDKII----KPSKYFQMSKEGDSYVLRISEAFPEDEGQY 86
+++W + + + K+G V
Sbjct: 120 SVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPV 179
Query: 87 KCIATNQGGQV 97
C+ N +
Sbjct: 180 TCVGKNDKEEA 190
Score = 49.3 bits (117), Expect = 1e-08
Identities = 9/48 (18%), Positives = 21/48 (43%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+F + + +++ L ++ A +G Y C +V +L V+
Sbjct: 55 RGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV 102
Score = 31.5 bits (71), Expect = 0.033
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVES 36
G+ + V + + T N +
Sbjct: 161 GSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 192
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 57.0 bits (137), Expect = 2e-11
Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 34/133 (25%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVES---------------------------TA 38
+ SL+ +D G++TL + + +
Sbjct: 69 SNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSV 128
Query: 39 RLTVKT----INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ- 93
LT + NI+W + ++ ++ +S+ LRI ED G+Y+C +N
Sbjct: 129 TLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPV 186
Query: 94 GGQVVLTANLKVL 106
+ + L ++
Sbjct: 187 SVRRSNSIKLDII 199
Score = 34.3 bits (78), Expect = 0.003
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 21/95 (22%)
Query: 23 FTLRAVNSAGQVESTARLTVK-----TINIKWQKGD------KIIKPSKYFQMSKEGDSY 71
T+ AV ++ L V W KG+ +I + M+ G +Y
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAY 61
Query: 72 V----------LRISEAFPEDEGQYKCIATNQGGQ 96
L +D G Y T++ +
Sbjct: 62 SGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYR 96
Score = 30.0 bits (67), Expect = 0.10
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTV 42
M+ + L ++ ED+G + N S + +L +
Sbjct: 156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI 198
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 56.3 bits (136), Expect = 2e-11
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 42/138 (30%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT--------------- 44
+S + L L + D+G + + + S LTV+
Sbjct: 53 VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPP 112
Query: 45 ----------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ I W +G I VL ++ + C
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP-------APSPSVLNVTG--VTQSTMFSC 163
Query: 89 IATNQGGQVV-LTANLKV 105
A N G TA + +
Sbjct: 164 EAHNLKGLASSRTATVHL 181
Score = 53.3 bits (128), Expect = 3e-10
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 44 TINIKWQKGDKIIKPS--KYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV-LT 100
+I+W K +++ Y +S++ L + D G+Y C + G +
Sbjct: 31 EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90
Query: 101 ANLKV 105
L V
Sbjct: 91 VWLTV 95
Score = 39.8 bits (93), Expect = 4e-05
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK 43
+ VLN T S +F+ A N G S TA + ++
Sbjct: 144 APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 57.1 bits (137), Expect = 4e-11
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 32/128 (25%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVE-----------------STARLTVK-- 43
++ L++ EDS + + +V+ + LT++
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESP 121
Query: 44 ---TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+ +++ + L +S+ +D G + C +V
Sbjct: 122 PGSSPSVQCRSPRG----------KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171
Query: 101 ANLKVLDI 108
++ VL
Sbjct: 172 IDIVVLAF 179
Score = 55.2 bits (132), Expect = 2e-10
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 31/117 (26%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT-------------------INIKW 49
+L SG TL G++ L V + +
Sbjct: 258 TLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSL 317
Query: 50 QKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ +K K SK + + G ++C+ ++ GQV+L +N+KVL
Sbjct: 318 KLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSD-SGQVLLESNIKVL 362
Score = 42.1 bits (98), Expect = 8e-06
Identities = 19/152 (12%), Positives = 38/152 (25%), Gaps = 52/152 (34%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI----------------------- 45
+L ++ +DSG +T + + +VE + V
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAF 202
Query: 46 ---------NIKWQK-GDKIIKPSKYFQMSKEG-------DSYVLRISEAFP-------- 80
+ WQ K F + + L++ + P
Sbjct: 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA 262
Query: 81 ----EDEGQYKCIATNQGGQVVLTANLKVLDI 108
G + G++ NL V+
Sbjct: 263 LPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 56.3 bits (135), Expect = 6e-11
Identities = 18/142 (12%), Positives = 33/142 (23%), Gaps = 45/142 (31%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L EDSG + NS+ +
Sbjct: 63 KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGG 122
Query: 44 ---------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
++W K K + + L + + G Y C
Sbjct: 123 LVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR---LIVMNVAEKHRGNYTC 179
Query: 89 IATNQ--GGQVVLTANLKVLDI 108
A+ G Q +T ++ + +
Sbjct: 180 HASYTYLGKQYPITRVIEFITL 201
Score = 54.3 bits (130), Expect = 4e-10
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 4/87 (4%)
Query: 23 FTLRAVNSAGQVESTARLTVKTINIKWQKGDK--IIKPSKYFQMSKEGDSYVLRISEAFP 80
+ + N I W K D + + ++ + + L A
Sbjct: 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK--LWFVPAKV 71
Query: 81 EDEGQYKCIATNQGGQVVLTANLKVLD 107
ED G Y C+ N + + + K ++
Sbjct: 72 EDSGHYYCVVRNSSYCLRIKISAKFVE 98
Score = 53.6 bits (128), Expect = 6e-10
Identities = 19/156 (12%), Positives = 33/156 (21%), Gaps = 53/156 (33%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------- 43
F G L++ E+ G +T A + + ++
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 44 ---------------------TINIKWQKGDKIIKPS------------KYFQMSKEGDS 70
+ W+ +I +
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276
Query: 71 YVLRISEAFPED-EGQYKCIATNQGGQVVLTANLKV 105
VL ISE + + C A N G L
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 32.4 bits (73), Expect = 0.015
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
FT A N+ G + +L
Sbjct: 283 EIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 55.3 bits (132), Expect = 2e-10
Identities = 21/141 (14%), Positives = 33/141 (23%), Gaps = 47/141 (33%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------------- 43
L T D+G +T N+ + L V
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQR 139
Query: 44 --------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
I W G I+ + L A + G Y C+
Sbjct: 140 ITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTCV 195
Query: 90 AT----NQGGQVVLTANLKVL 106
T + + T +KV+
Sbjct: 196 VTYPENGRTFHLTRTLTVKVV 216
Score = 47.2 bits (111), Expect = 1e-07
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSY----------VLRISEAFPEDEG-QYKCIATN 92
+ W K E S+ +L I + ED Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 93 QGGQVVLTANLKV 105
G+V A +K
Sbjct: 319 AKGEVAKAAKVKQ 331
Score = 46.4 bits (109), Expect = 2e-07
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 5/68 (7%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEG-----DSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ + W + + + VL D G Y C+ N
Sbjct: 47 GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSK 106
Query: 99 LTANLKVL 106
+ L+V+
Sbjct: 107 VAFPLEVV 114
Score = 35.2 bits (80), Expect = 0.002
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 4 EGTTASLVLNTTYEED-SGLFTLRAVNSAGQVESTARLTVK 43
E T L + ED + A ++ G+V A++ K
Sbjct: 292 ETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 54.9 bits (132), Expect = 2e-10
Identities = 23/145 (15%), Positives = 39/145 (26%), Gaps = 48/145 (33%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK------------------ 43
F ++L + T +G + + + +TVK
Sbjct: 125 KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLE 184
Query: 44 -------------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEG 84
+ + G K ++ S +I A ED G
Sbjct: 185 GNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSG 236
Query: 85 QYKCIATNQGGQVV---LTANLKVL 106
Y C A + G V+ L+VL
Sbjct: 237 LYWCEAATEDGNVLKRSPELELQVL 261
Score = 46.8 bits (111), Expect = 1e-07
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 36/130 (27%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVE----------------------STARLT 41
+ +T S + + DSG + + S L
Sbjct: 44 QTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALR 103
Query: 42 ------VKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
N+ + + K K + L I + G Y C +
Sbjct: 104 CHAWKDKLVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHR 155
Query: 96 QVVLTANLKV 105
++ V
Sbjct: 156 YTSAGISVTV 165
Score = 32.2 bits (73), Expect = 0.021
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ + +W + S + RI+ A D G+Y+C G
Sbjct: 30 GSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLSGR 72
Score = 29.1 bits (65), Expect = 0.21
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES---TARLTVK 43
+ T++ + T EDSGL+ A G V L V
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQVL 261
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 53.6 bits (128), Expect = 6e-10
Identities = 13/134 (9%), Positives = 26/134 (19%), Gaps = 37/134 (27%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT--------------------- 44
+ L + E + + + L V+
Sbjct: 192 VISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVK 251
Query: 45 -----------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
W + + Q + + G Y C ATN
Sbjct: 252 LTCKADANPPATEYHWTTLNGSLPKGVEAQ-----NRTLFFKGPINYSLAGTYICEATNP 306
Query: 94 GGQVVLTANLKVLD 107
G + + +
Sbjct: 307 IGTRSGQVEVNITE 320
Score = 42.4 bits (99), Expect = 5e-06
Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 39/138 (28%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVN-SAGQVESTARLTVKT---------------------- 44
++ L+ ED G++ G ES LTV
Sbjct: 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDK 151
Query: 45 --------------INIKWQKGDKIIKPSKYFQMSKEGDSY--VLRISEAFPEDEGQYKC 88
+ W+ K + + + R+ + + C
Sbjct: 152 VLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLAC 211
Query: 89 IATNQGGQVVLTANLKVL 106
I + + L V
Sbjct: 212 IVNYHMDRFKESLTLNVQ 229
Score = 37.0 bits (85), Expect = 4e-04
Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 19/85 (22%)
Query: 41 TVKTINIKWQKGDKIIKPSKYFQMSKEGDS------------------YVLRISEAFPED 82
+VK + WQK K + G S +R+S ED
Sbjct: 44 SVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELED 103
Query: 83 EGQYKC-IATNQGGQVVLTANLKVL 106
EG Y C AT G NL V+
Sbjct: 104 EGVYICEFATFPTGNRESQLNLTVM 128
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 50.6 bits (121), Expect = 1e-09
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 44 TINIKWQKGDKIIKPSK-----YFQMSKEGDSYVLRISEAF--PEDEGQYKCIATNQGGQ 96
T I+W KG + ++ K + + G + LRI DEG Y C+A N G+
Sbjct: 38 TPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Query: 97 VV-LTANLKVL 106
V A+L+V
Sbjct: 98 AVSHDASLEVA 108
Score = 32.1 bits (73), Expect = 0.013
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT 44
+V D G++ A N G+ S A L V
Sbjct: 73 RIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAA 109
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 52.4 bits (125), Expect = 2e-09
Identities = 22/150 (14%), Positives = 35/150 (23%), Gaps = 43/150 (28%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVKT--------------- 44
+ N A + S L V+
Sbjct: 139 FVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSH 198
Query: 45 --------------------INIKWQKGDKIIKPSKYFQMSKEGD-------SYVLRISE 77
+N W K + + + + L IS
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
A +D G + C A N G +T LKV++
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLKVVE 288
Score = 40.9 bits (95), Expect = 2e-05
Identities = 16/132 (12%), Positives = 30/132 (22%), Gaps = 31/132 (23%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAG-----QVESTARLTVKTI------------- 45
E + +G +T N V A+L + +
Sbjct: 53 ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVR 112
Query: 46 ---------NIKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ D K + F + + + + +C A G
Sbjct: 113 CPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA--GITIKNVKRAYHRLCVRCAAQRDGT 170
Query: 96 QVV-LTANLKVL 106
+ LKV
Sbjct: 171 WLHSDKFTLKVR 182
Score = 37.4 bits (86), Expect = 3e-04
Identities = 7/53 (13%), Positives = 13/53 (24%), Gaps = 7/53 (13%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
++W + E +A G Y C +N +
Sbjct: 39 FVRWTFKTYFNEMV-------ENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI 84
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 50.2 bits (119), Expect = 2e-09
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 17/106 (16%)
Query: 17 EEDSGLFTLR----AVNSAGQVESTARLTVKTI----NIKWQKG---DKIIKPSKYFQMS 65
EE +G+F + +V + A++ K + IKW KG + K F
Sbjct: 9 EEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFK 68
Query: 66 KEGD------SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ + + L I + D G Y+ + N+ V
Sbjct: 69 ESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
Score = 26.3 bits (57), Expect = 1.7
Identities = 6/37 (16%), Positives = 10/37 (27%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
T L + D G + L + V+
Sbjct: 79 TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 50.9 bits (121), Expect = 3e-09
Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 44/142 (30%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------------- 43
+ + +G+ A + +S + V
Sbjct: 66 FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVL 125
Query: 44 ----------TINIKWQKGDKIIKPSKYFQMSKEGDS--------YVLRISEAFPEDEGQ 85
I+ W+ + K + S L I D+G
Sbjct: 126 NCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 185
Query: 86 YKCIATNQGGQVVLTANLKVLD 107
Y C A++ + ++V +
Sbjct: 186 YTCAASSGLMTKKNSTFVRVHE 207
Score = 38.2 bits (88), Expect = 1e-04
Identities = 6/68 (8%), Positives = 13/68 (19%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
++ +N+ + I G C A
Sbjct: 32 LGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91
Query: 99 LTANLKVL 106
+ V+
Sbjct: 92 SIMYIVVV 99
Score = 32.5 bits (73), Expect = 0.017
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
++L ++ D GL+T A + +++ + V
Sbjct: 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 50.6 bits (120), Expect = 7e-09
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 25/127 (19%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAG------------QVESTARLTVKTI--NIKW 49
G A L+L T E++ F+ A +V RL + N W
Sbjct: 323 LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTW 382
Query: 50 QKGDKII-------KPSKYFQMSKEGDSYVLRISEAFP---EDEGQYKCIATNQGGQVVL 99
+ + P + K+G L I E+ + EG Y C A + G+V
Sbjct: 383 PENSQQTPMCQAWGNPLPELKCLKDGTF-PLPIGESVTVTRDLEGTYLCRARSTQGEVTR 441
Query: 100 TANLKVL 106
+ VL
Sbjct: 442 EVTVNVL 448
Score = 37.5 bits (86), Expect = 3e-04
Identities = 13/134 (9%), Positives = 26/134 (19%), Gaps = 44/134 (32%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------- 43
+ ++ + ED G L G TV
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299
Query: 44 ------------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
+ + G L + ++ + C AT
Sbjct: 300 EVTVKCEAHPRAKVTLNGVPA------------QPLGPRAQLLLKATPEDNGRSFSCSAT 347
Query: 92 NQGGQVVLTANLKV 105
+ ++ N
Sbjct: 348 LEVAGQLIHKNQTR 361
Score = 33.7 bits (76), Expect = 0.005
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSY-VLRISEAFPEDEGQYK--CIATNQGGQVVLT 100
+ GD+ + P+ ++ DS+ EDEG + C
Sbjct: 220 EAQVHLALGDQRLNPT----VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 275
Query: 101 ANLKV 105
+ +
Sbjct: 276 QTVTI 280
Score = 33.3 bits (75), Expect = 0.008
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 37/126 (29%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT------------------- 44
V + ++ + GQ + LTV
Sbjct: 44 LPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKN 103
Query: 45 ---------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCI 89
+ + +G+K +K E + VL + + C
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD---HHGANFSCR 160
Query: 90 ATNQGG 95
Sbjct: 161 TELDLR 166
Score = 31.8 bits (71), Expect = 0.032
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKV 105
+++ Q C + GQ L V
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTV 82
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 48.7 bits (116), Expect = 7e-09
Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 37/111 (33%)
Query: 32 GQVESTARLTVKT------------------------------INIKWQKGDKIIKPSKY 61
G S+ LTV I W + +++
Sbjct: 1 GSSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60
Query: 62 FQMS------KEGDSYVLRISEAFPEDEG-QYKCIATNQGGQVVLTANLKV 105
+ + +EG L IS D Y C A N G LK
Sbjct: 61 GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 36.8 bits (85), Expect = 2e-04
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 4 EGTTASLVLNTTYEED-SGLFTLRAVNSAGQVESTARLTVKT 44
EG ++L ++ D ++ A NS G RL +
Sbjct: 72 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQG 113
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 50.4 bits (120), Expect = 7e-09
Identities = 25/125 (20%), Positives = 38/125 (30%), Gaps = 23/125 (18%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQV----ESTARLTVKT----------INIKWQ 50
G A L+L T E++ F+ A T L V N W
Sbjct: 139 GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWP 198
Query: 51 KGDKII-------KPSKYFQMSKEGDSYV--LRISEAFPEDEGQYKCIATNQGGQVVLTA 101
+ + P + K+G + + EG Y C A + G+V
Sbjct: 199 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREV 258
Query: 102 NLKVL 106
+ VL
Sbjct: 259 TVNVL 263
Score = 36.6 bits (84), Expect = 5e-04
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRIS---EAFPEDEGQYKCIATNQGGQVVLTANL 103
+ GD+ + P+ ++ DS+ + S A E + C +
Sbjct: 38 VHLALGDQRLNPT----VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 93
Query: 104 KVL 106
+
Sbjct: 94 TIY 96
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 49.6 bits (118), Expect = 8e-09
Identities = 19/138 (13%), Positives = 31/138 (22%), Gaps = 41/138 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK---------------------- 43
++ G ++ + TA + +
Sbjct: 47 PGQKTEFKVDSDDQWGEYSCVFLPEPMG---TANIQLHGPPRVKAVKSSEHINEGETAML 103
Query: 44 ---------TINIKWQKGDKIIKP------SKYFQMSKEGDSYVLRISEAFPE-DEGQYK 87
+ W K F +S L I E D GQY+
Sbjct: 104 VCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163
Query: 88 CIATNQGGQVVLTANLKV 105
C T+ G L+V
Sbjct: 164 CNGTSSKGSDQAIITLRV 181
Score = 39.6 bits (92), Expect = 4e-05
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
S +G + + N E D G + +S G ++ L V++
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 50.2 bits (119), Expect = 9e-09
Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 52/144 (36%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV--------------------- 42
E TA+L + E++G + + ++ + + +
Sbjct: 48 ENNTATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQ 107
Query: 43 --------------------KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPED 82
++ W KG+ +I + + I E +
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFTADK 156
Query: 83 EGQYKCIATNQGGQVVLTANLKVL 106
G Y + +A+ K++
Sbjct: 157 NGVYTVKVWGESEDSAASASTKIM 180
Score = 39.8 bits (92), Expect = 4e-05
Identities = 17/152 (11%), Positives = 41/152 (26%), Gaps = 56/152 (36%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK--------------------- 43
TT + + + +G++T++ + ++A +
Sbjct: 142 DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNE 201
Query: 44 ---------------------TINIKWQK-----------GDKIIKPSKYFQMSKEGDSY 71
TI W G ++ + + F ++ +G
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH-- 259
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
L A +D ++ C+A T +
Sbjct: 260 -LFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 38.3 bits (88), Expect = 1e-04
Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 19/93 (20%)
Query: 23 FTLRAVNSAGQVESTARLTVK---------TINIKWQKGDKIIKPSKYFQMSKEGDSYVL 73
++++ LT + W K D+ E ++ L
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH----------ENNTATL 54
Query: 74 RISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+++A E+ G YK + + + + ++
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 49.9 bits (118), Expect = 9e-09
Identities = 10/51 (19%), Positives = 17/51 (33%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
I WQ DK I + + + ++ + E G Y C +
Sbjct: 142 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 192
Score = 39.5 bits (91), Expect = 5e-05
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 7/57 (12%)
Query: 42 VKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ NI W K K+I D + + G Y+C + + +
Sbjct: 27 AEAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPL 76
Score = 30.6 bits (68), Expect = 0.057
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST 37
+ + E SG + S + +
Sbjct: 160 NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 48.9 bits (116), Expect = 2e-08
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 38/132 (28%)
Query: 12 LNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT--------------------------- 44
+ + + + +V+S A +
Sbjct: 145 RGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCI 204
Query: 45 ------INIKWQKGDK-----IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+N +W K + + + +L I A ED G Y C T
Sbjct: 205 VIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTES 264
Query: 94 GGQVVLTANLKV 105
+ +
Sbjct: 265 VNDHQDEKAINI 276
Score = 42.4 bits (99), Expect = 6e-06
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTA 101
+ W++ + P + + S VL ++ D G+Y C + G
Sbjct: 27 PVVWERMSQEP-PQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDER 81
Score = 39.3 bits (91), Expect = 7e-05
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 31/128 (24%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKY-FQMS 65
++ L L D+G + +S G + I + + ++ F
Sbjct: 50 SSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL--YIFVPDPTVGFLPNDAEELFIFL 107
Query: 66 KEGDSYVL----------------------------RISEAFPEDEGQYKCIATNQGGQV 97
E + + + ++ Y C T +V
Sbjct: 108 TEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREV 167
Query: 98 VLTANLKV 105
A
Sbjct: 168 DSDAYYVY 175
Score = 34.3 bits (78), Expect = 0.004
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
L + + EDSG +T S + + +
Sbjct: 243 ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 49.1 bits (116), Expect = 3e-08
Identities = 18/152 (11%), Positives = 36/152 (23%), Gaps = 49/152 (32%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT------------------ 44
+ + +L+++ EDSG + ++++ ++
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 45 -------------------------INIKWQKGDKIIKPSKYFQMSKEGDSY-----VLR 74
+ I W+ I + S S L
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 75 ISEAFPEDEGQ-YKCIATNQGGQVVLTANLKV 105
E G Y C N LT + +
Sbjct: 297 FENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 47.9 bits (113), Expect = 6e-08
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 35/128 (27%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ-VESTARLTVKT------------------------ 44
+ N T + + G V+ R ++
Sbjct: 92 WIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCG 151
Query: 45 -------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
NI W K ++ + L I ED G+Y C ++
Sbjct: 152 ILYAKHYNNITWYKNNQELIIDGTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRI 208
Query: 98 VLTANLKV 105
+
Sbjct: 209 KNDIVVSR 216
Score = 35.2 bits (80), Expect = 0.002
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEG-QYKCIATNQGGQVV 98
K + W+K K +P + L I+ D +Y C T + G V
Sbjct: 66 KDNVVNWEKIGKTRRPLNRRV-----KNGDLWIANYTSNDSHRRYLCTVTTKNGDCV 117
Score = 32.5 bits (73), Expect = 0.014
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 6 TTASLVLNTTYEEDSG-LFTLRAVNSAGQVESTARLTVK 43
T A+L EE G +T R N T + ++
Sbjct: 291 TEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 48.2 bits (114), Expect = 5e-08
Identities = 17/134 (12%), Positives = 28/134 (20%), Gaps = 40/134 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQ--VESTARLTVKT------------------- 44
T+ +L + + D T + + + + T LTV
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234
Query: 45 -------------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIAT 91
W + P L I C T
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPPFA------VAQGAQLLIRPVDKPINTTLICNVT 288
Query: 92 NQGGQVVLTANLKV 105
N G ++V
Sbjct: 289 NALGARQAELTVQV 302
Score = 47.4 bits (112), Expect = 9e-08
Identities = 22/136 (16%), Positives = 32/136 (23%), Gaps = 37/136 (27%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNS-AGQVESTARLTVK----------------------- 43
ASL + ED G +T V G L V
Sbjct: 79 ASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMAR 138
Query: 44 --------TINIKWQKGDKIIKPSKYFQMSKEGDSYV---LRISEAFPEDEGQYKCIATN 92
I W + + G V + + D C +
Sbjct: 139 CVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEH 198
Query: 93 QGGQ--VVLTANLKVL 106
+ + +LT NL V
Sbjct: 199 ESFEKPQLLTVNLTVY 214
Score = 39.3 bits (91), Expect = 6e-05
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 19/93 (20%)
Query: 33 QVESTARLTVKTINIKWQKGDKIIKPSKYF------------------QMSKEGDSYVLR 74
++ + W + + + + ++ E + LR
Sbjct: 23 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82
Query: 75 ISEAFPEDEGQYKC-IATNQGGQVVLTANLKVL 106
+ EDEG Y C T G + L+VL
Sbjct: 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 47.6 bits (112), Expect = 7e-08
Identities = 18/163 (11%), Positives = 35/163 (21%), Gaps = 60/163 (36%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSA-----GQVESTARLTVK----------------- 43
+L L + +D G + + + G + L V
Sbjct: 88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQ 147
Query: 44 -----------------TINIKWQKGDKIIKPSKYFQMSKEG------------------ 68
N+ W G + +
Sbjct: 148 VDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRA 207
Query: 69 ---DSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108
+ L I A D G+ C G++ + +L +
Sbjct: 208 SFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV 250
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 47.6 bits (112), Expect = 8e-08
Identities = 14/154 (9%), Positives = 30/154 (19%), Gaps = 54/154 (35%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI---------------------- 45
SL+L + D G++T + + + +
Sbjct: 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQ 143
Query: 46 --------NIKWQKGDKIIKPSKYFQMSKEGDSYV------------------------L 73
+ W + +
Sbjct: 144 STEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSI 203
Query: 74 RISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
++ D+G Y C + T L V+
Sbjct: 204 KLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Score = 40.6 bits (94), Expect = 2e-05
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ L + + DEG Y C + +V+ +++
Sbjct: 75 LVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW 119
Score = 35.2 bits (80), Expect = 0.001
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
S+ L T E D G++T + T L V
Sbjct: 199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 45.0 bits (107), Expect = 1e-07
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 14/67 (20%)
Query: 36 STARLTVK-----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
ST L + +W K + + + + E +G Y C
Sbjct: 19 STLVLQCVAVGSPIPHYQWFKNELPLTHE---------TKKLYMVPYVDLEHQGTYWCHV 69
Query: 91 TNQGGQV 97
N
Sbjct: 70 YNDRDSQ 76
Score = 35.8 bits (83), Expect = 3e-04
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
T ++ E G + N +S +
Sbjct: 46 HETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 84
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 47.0 bits (112), Expect = 1e-07
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 47 IKWQK--GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+KW G + S++ ++S + L S D G Y C+ TN G +A L
Sbjct: 382 VKWLLPNGTVLSHASRHPRIS-VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Query: 105 V 105
V
Sbjct: 441 V 441
Score = 37.0 bits (86), Expect = 5e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKW 49
+GT L + D+G++T N AG ++A L V T
Sbjct: 406 DGT---LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHH 448
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 45.1 bits (106), Expect = 1e-07
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 8/72 (11%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDS--------YVLRISEAFPEDEGQYKCIATNQGG 95
I+ W+ + K + S L I D+G Y C A++
Sbjct: 39 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLM 98
Query: 96 QVVLTANLKVLD 107
+ ++V +
Sbjct: 99 TKKNSTFVRVHE 110
Score = 32.4 bits (73), Expect = 0.011
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
++L ++ D GL+T A + +++ + V
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 46.4 bits (110), Expect = 2e-07
Identities = 14/100 (14%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 11 VLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI-----NIKWQKGDKIIKPSKYFQMS 65
+ N + + + T + T + ++ +
Sbjct: 237 LHNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSV 296
Query: 66 KEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ L + ED G Y C A + L+ LKV
Sbjct: 297 SVRNG-DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
Score = 34.4 bits (79), Expect = 0.004
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
L ED G++T A+ + L V
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETLSVELKV 335
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 45.9 bits (109), Expect = 3e-07
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 47 IKWQKGD-KIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ W + ++ Y L + +D G Y C+ +N G +A L V
Sbjct: 372 VSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
Query: 106 L 106
Sbjct: 432 T 432
Score = 34.7 bits (80), Expect = 0.003
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
+L +D+G++T NS G ++A L V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGT 434
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 44.1 bits (104), Expect = 8e-07
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 37/132 (28%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVEST-------------------------- 37
E T +SL + EDSG + +
Sbjct: 47 EETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLR 106
Query: 38 --ARLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ + K + +K +++ + I+ A ED G Y C
Sbjct: 107 CHGWRNWDVYKVIYYKDGEALKYW--------YENHNISITNATVEDSGTYYCTGKVWQL 158
Query: 96 QVV-LTANLKVL 106
N+ V+
Sbjct: 159 DYESEPLNITVI 170
Score = 31.8 bits (72), Expect = 0.026
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK 43
+ + ++ + EDSG + ES +TV
Sbjct: 127 LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 31.0 bits (70), Expect = 0.045
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 10/46 (21%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
KW + + + L I A ED G+YKC
Sbjct: 37 TKWFHNGSLSE----------ETNSSLNIVNAKFEDSGEYKCQHQQ 72
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 43.6 bits (102), Expect = 1e-06
Identities = 16/134 (11%), Positives = 41/134 (30%), Gaps = 37/134 (27%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN-------------- 46
++ EGTT++L +N + + A + ++E ++ + +
Sbjct: 47 VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAG 106
Query: 47 -------------------IKWQKGDKIIKPSKYFQMSKEGD----SYVLRISEAFPEDE 83
I KGD ++K ++ + + S + + +
Sbjct: 107 KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG 166
Query: 84 GQYKCIATNQGGQV 97
C A ++
Sbjct: 167 KVLVCRAKLHIDEM 180
Score = 41.7 bits (97), Expect = 7e-06
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
W+ I +++ EG + L ++ +E Y C AT + ++ +++
Sbjct: 33 FSWRTQ---IDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI 88
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 42.9 bits (101), Expect = 2e-06
Identities = 17/133 (12%), Positives = 27/133 (20%), Gaps = 41/133 (30%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK-------------------- 43
T DSG +T + ++ LTV
Sbjct: 47 PTHTQPSYRFKANNNDSGEYTCQTGQTSL--SDPVHLTVLFEWLVLQTPHLEFQEGETIM 104
Query: 44 ----------TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+ + + + K K S I +A G Y C
Sbjct: 105 LRCHSWKDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIG 156
Query: 94 GGQVV-LTANLKV 105
+ V
Sbjct: 157 YTLFSSKPVTITV 169
Score = 32.1 bits (73), Expect = 0.014
Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK 43
F + + SG + S +TV+
Sbjct: 127 QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 30.9 bits (70), Expect = 0.049
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 10/48 (20%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+I+W +I + +A D G+Y C
Sbjct: 35 DSIQWFHNGNLIP----------THTQPSYRFKANNNDSGEYTCQTGQ 72
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 42.6 bits (100), Expect = 3e-06
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 43 KTINIKWQKG-DKIIKPSKYFQMSKEGDSYV------LRISEAFPEDEGQYKCIATNQGG 95
++W++G + + + + + ++ L+I +D G Y + G
Sbjct: 26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85
Query: 96 QVVLTANLKV 105
+L L +
Sbjct: 86 TRILNKALDL 95
Score = 42.3 bits (99), Expect = 3e-06
Identities = 14/127 (11%), Positives = 34/127 (26%), Gaps = 38/127 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT--------------------- 44
L + +DSG + + ++ G L ++
Sbjct: 59 ANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCE 118
Query: 45 ------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ +K +G + ++ + +S + +KC A N+ Q
Sbjct: 119 VLEGTDVELKLYQGKEHLRSLR-----------QKTMSYQWTNLRAPFKCKAVNRVSQES 167
Query: 99 LTANLKV 105
+
Sbjct: 168 EMEVVNC 174
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 42.6 bits (100), Expect = 3e-06
Identities = 11/127 (8%), Positives = 32/127 (25%), Gaps = 38/127 (29%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK---------------------- 43
+L + +D ++ + ++ G+ +K
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCE 123
Query: 44 -----TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ + K +K S+ + + ++KC A N+ +
Sbjct: 124 VMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSLSAKFKCTAGNKVSKES 172
Query: 99 LTANLKV 105
+
Sbjct: 173 SVEPVSC 179
Score = 41.8 bits (98), Expect = 6e-06
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ + K +++K + K +++ K G L+I +D+ YK + G+ V
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNV 93
Query: 99 LTA--NLKVLD 107
L +LK+ +
Sbjct: 94 LEKIFDLKIQE 104
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 42.8 bits (101), Expect = 4e-06
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 47 IKWQKGDKII---KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
I W K + K + + +G L + A +D G Y CIA N GG + A+L
Sbjct: 417 ILWLSPRKHLVSAKSNGRLTVFPDG---TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
Query: 104 KV 105
V
Sbjct: 474 HV 475
Score = 34.3 bits (79), Expect = 0.004
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+ +GT L + +D+G + A N+ G A L V++
Sbjct: 437 VFPDGT---LEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRS 477
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.1 bits (96), Expect = 5e-06
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 10/70 (14%)
Query: 46 NIKWQK---------GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+++W ++K SKY + + + + +DEG YKC+ +
Sbjct: 32 SLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVS 91
Query: 97 VVLTANLKVL 106
+ VL
Sbjct: 92 -TKEVKVIVL 100
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 39.7 bits (92), Expect = 1e-05
Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 16/86 (18%)
Query: 36 STARLTVK-------TINIKWQKGDKIIKPSK---YFQMSKEGDSY-----VLRISEAFP 80
S T + W ++ ++ ++ Y + +G +LR+
Sbjct: 26 SDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF 85
Query: 81 EDEGQYKCIATNQGGQVV-LTANLKV 105
EG Y+C+ +N G + A L +
Sbjct: 86 TSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 35.4 bits (81), Expect = 7e-04
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVEST-ARLTV 42
T L L G + N G S A LT+
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.6 bits (92), Expect = 2e-05
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 16/85 (18%)
Query: 36 STARLTV---KTINIKWQKGDKIIKPSKY----------FQMSKEGDSYVLRISEAFPED 82
A ++ I W + +K ++ +++ ++G + L + +D
Sbjct: 24 EDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD 83
Query: 83 EGQYKCIATNQGGQVVLTANLKVLD 107
G + V +A L + +
Sbjct: 84 SGALVGFSC---PGVQDSAALTIQE 105
Score = 31.1 bits (70), Expect = 0.022
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ +G L+L+ +DSG S V+ +A LT++
Sbjct: 65 IEQKGLQHRLILHAVKHQDSGA---LVGFSCPGVQDSAALTIQ 104
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 40.4 bits (93), Expect = 3e-05
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ + I++ D GQY C A + A+L+VL
Sbjct: 184 LFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220
Score = 38.4 bits (88), Expect = 2e-04
Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 8/67 (11%)
Query: 47 IKWQKGDKIIKPSKY------FQMSKEGDSYV-LRISEAFPEDEGQYKC-IATNQGGQVV 98
KW PS+ F E V L ++ DEG Y C +
Sbjct: 478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537
Query: 99 LTANLKV 105
+ V
Sbjct: 538 AAVYVAV 544
Score = 35.7 bits (81), Expect = 0.001
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 43 KTINIKWQKGDKIIKPSK---YFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
+ ++ K + + S+ + I+ ED G+Y C A + G
Sbjct: 259 ENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEG 318
Query: 100 TANL 103
+
Sbjct: 319 SPIQ 322
Score = 34.2 bits (77), Expect = 0.004
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 16/76 (21%)
Query: 43 KTINIKWQKG------DKIIKPSKYFQMSKEG----------DSYVLRISEAFPEDEGQY 86
+ W + +I Y G ++V+ I++ +D G+Y
Sbjct: 31 RHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRY 90
Query: 87 KCIATNQGGQVVLTAN 102
KC + +
Sbjct: 91 KCGLGINSRGLSFDVS 106
Score = 33.0 bits (74), Expect = 0.012
Identities = 6/59 (10%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 48 KWQKGDKIIKPSKYFQMSKEGD----------SYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ + ++ + + EG ++ + +++ D G Y C+
Sbjct: 373 QNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLW 431
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 40.4 bits (93), Expect = 4e-05
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG-GQVVLTANLK 104
W+ + + + + S +L I + G Y C A + L
Sbjct: 530 TYSWRHKENVEQSCEPGHQSPNC---ILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLL 586
Query: 105 VLD 107
D
Sbjct: 587 PED 589
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.0 bits (90), Expect = 5e-05
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 15/116 (12%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIK-----WQKGDK----- 54
GT + T L + + + W +
Sbjct: 23 GTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYF 82
Query: 55 ----IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
++ ++ ++ + IS DEG+Y C + + VL
Sbjct: 83 GEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVL 137
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 37.9 bits (88), Expect = 6e-05
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 15/85 (17%)
Query: 36 STARLT-----VKTINIKWQKGDKII---------KPSKYFQMSKEGDSYVLRISEAFPE 81
TA LT +++W + + ++ + + +S+
Sbjct: 22 GTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81
Query: 82 DEGQYKCIATNQGGQVVLTANLKVL 106
DEGQY C + A L VL
Sbjct: 82 DEGQYTCSLFTMPVK-TSKAYLTVL 105
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 39.4 bits (91), Expect = 7e-05
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKE-GDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
+ Q D P K +++ + D G+Y+C+ +GG +
Sbjct: 196 DRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAE 255
Query: 104 KVLD 107
V+
Sbjct: 256 LVVK 259
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 38.4 bits (89), Expect = 1e-04
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 40/137 (29%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI--------------------- 45
A+L + +D+G++ ++ G + V
Sbjct: 79 NAALQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELT 137
Query: 46 ---------NIKWQKGDKIIKPSKYFQMSKEGD------SYVLRISEAFPEDEGQYKCIA 90
+ W D + K + + + + LRI+ + C
Sbjct: 138 CQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRIN---TTTNEIFYCTF 194
Query: 91 TNQGGQVVLTANLKVLD 107
+ TA L + +
Sbjct: 195 RRLDPEENHTAELVIPE 211
Score = 31.9 bits (72), Expect = 0.025
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 21/94 (22%)
Query: 33 QVESTARLTVKTINIKWQKGDKII------KPSKYFQMSK-------------EGDSYVL 73
+ +L + + + W+ DK I + Q S G++ L
Sbjct: 24 KFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAA-L 82
Query: 74 RISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+I++ +D G Y+C+ + GG +KV
Sbjct: 83 QITDVKLQDAGVYRCMI-SYGGADYKRITVKVNA 115
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 37.9 bits (88), Expect = 2e-04
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 41/133 (30%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT------------------- 44
+S ++ DSG + + S +L V
Sbjct: 50 SSQASSYFIDAATVNDSGEYRCQTNLSTLS--DPVQLEVHIGWLLLQAPRWVFKEEDPIH 107
Query: 45 -----------INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+ + + K K + I +A +D G Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVG 159
Query: 94 GGQVV-LTANLKV 105
V T N+ +
Sbjct: 160 SKNVSSETVNITI 172
Score = 29.1 bits (65), Expect = 0.22
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 10/46 (21%)
Query: 47 IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+W + +I + I A D G+Y+C
Sbjct: 40 TQWFHNESLI----------SSQASSYFIDAATVNDSGEYRCQTNL 75
Score = 28.7 bits (64), Expect = 0.24
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTVK 43
+ + + +DSG + R + + V S T +T+
Sbjct: 130 RKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 37.7 bits (87), Expect = 2e-04
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 31/127 (24%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI---------------------- 45
A + + DSG + + A + VK
Sbjct: 67 ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQ 126
Query: 46 -------NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ WQ S + EG V + P+ + C+ N + +
Sbjct: 127 ARGYPLAEVSWQNVSVPANTS--HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184
Query: 99 LTANLKV 105
+A +
Sbjct: 185 TSAIIDP 191
Score = 35.8 bits (82), Expect = 9e-04
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ I D GQY+C+ +KV
Sbjct: 66 KALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKV 101
Score = 26.5 bits (58), Expect = 1.7
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
T+ L L S F+ N+ + ++A +
Sbjct: 158 VTSVLRLKPQ---PSRNFSCMFWNAHMKELTSAIIDP 191
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 36.8 bits (85), Expect = 2e-04
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 11/76 (14%)
Query: 42 VKTINIKWQKGDKIIKPSKYFQMSKEGDSYV----------LRISEAFPEDEGQYKC-IA 90
+ + W++ D+++ S+ L + D G+Y C
Sbjct: 32 AQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYH 91
Query: 91 TNQGGQVVLTANLKVL 106
T G L+VL
Sbjct: 92 TYPDGTYTGRIFLEVL 107
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 37.2 bits (85), Expect = 3e-04
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+++W+ D + + + VL + A G C+ + G T L V
Sbjct: 39 SVQWRGLD-----TSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.1 bits (84), Expect = 5e-04
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 46 NIKWQKGDKIIKP--SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTA 101
+ W+ + ++K KY M ++ L I D G Y+C++ + +
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRKN----LLIFNLSEGDSGVYQCLSEERVKNKTVFQ 616
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 36.7 bits (84), Expect = 5e-04
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKC-IATNQGGQVVLTANLKVL 106
+ L ++EA DE Y C + G TA L V
Sbjct: 65 RGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF 113
Score = 27.1 bits (59), Expect = 1.1
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRA-VNSAGQVESTARLTV 42
+ LVL D + +AG E+TARL V
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 6e-04
Identities = 20/113 (17%), Positives = 33/113 (29%), Gaps = 32/113 (28%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLR--AVNSAGQVESTARLTVKTINIKWQKGDKIIKP 58
MS E + +V R + A + R I I P
Sbjct: 1777 MSIE-SLVEVV------------FYRGMTMQVAVPRDELGRSNYGMIAIN---------P 1814
Query: 59 SKYFQMSKEGDSYVLR-ISEAFPEDEGQYKCIATN---QGGQVVLTANLKVLD 107
+++ L+ + E + G I N + Q V +L+ LD
Sbjct: 1815 G---RVAASFSQEALQYVVERVGKRTGWLVEIV-NYNVENQQYVAAGDLRALD 1863
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 36.0 bits (83), Expect = 8e-04
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 40/124 (32%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV--------------------- 42
+S ++ +DSG + + S + +L V
Sbjct: 50 SSQASSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIH 107
Query: 43 ---------KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+ + + K K + I +A +D G Y C
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVG 159
Query: 94 GGQV 97
V
Sbjct: 160 SKNV 163
Score = 29.1 bits (65), Expect = 0.21
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 10/48 (20%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ +W + +I + I A +D G+Y+C
Sbjct: 38 QSTQWFHNESLI----------SSQASSYFIDAATVDDSGEYRCQTQL 75
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 35.3 bits (81), Expect = 0.001
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 16/90 (17%)
Query: 32 GQVESTARLTV----KTINIKWQKGDKII--------KPSKYFQ--MSKEGDSYVLRISE 77
G V V + W+K + + F+ + + S L I
Sbjct: 7 GVVYGNVTFHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66
Query: 78 AFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
DE +Y+ + N + L VL+
Sbjct: 67 LTSSDEDEYEMESPNITDTM--KFFLYVLE 94
Score = 34.9 bits (80), Expect = 0.002
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 34/113 (30%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVE------------------STARLTVKT 44
+ + SL + D + + + N ++ S A LT +
Sbjct: 55 LDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEV 114
Query: 45 IN-----IKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ +K +G + ++ + +S + +KC A N
Sbjct: 115 LEGTDVELKLYQGKEHLRSLR-----------QKTMSYQWTNLRAPFKCKAVN 156
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 35.7 bits (82), Expect = 0.001
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 13/64 (20%)
Query: 45 INIKWQKGDKIIKPSKYFQ------------MSKEGDSYVLRISEAFPEDEGQYKCIATN 92
I WQK K++ + + I P DEG Y+C+
Sbjct: 28 TRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLS-IVILALRPSDEGTYECVVLK 86
Query: 93 QGGQ 96
Sbjct: 87 YEKD 90
Score = 26.9 bits (59), Expect = 1.4
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 46 NIKWQKGDKIIKP-SKYFQMSKEGDSY----VLRISEAFPEDEGQYKCIATNQGGQVVLT 100
++ W + + + + E + Y L + + C+ +V T
Sbjct: 138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQT 194
Query: 101 AN 102
N
Sbjct: 195 FN 196
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 35.2 bits (81), Expect = 0.001
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 37/116 (31%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV------------------- 42
+ T +L + +ED G + +R + + + + V
Sbjct: 63 DLDKTNGALRIYNVSKEDRGDYYMR-MLHETEDQWKITMEVYEMVSKPMIYWECSNATLT 121
Query: 43 ------KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ +K +G + ++ + +S + +KC A N
Sbjct: 122 CEVLEGTDVELKLYQGKEHLRSLR-----------QKTMSYQWTNLRAPFKCKAVN 166
Score = 32.9 bits (75), Expect = 0.010
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 47 IKWQKGDKIIKPSKYFQ--MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
+++ K F+ + + + LRI ED G Y ++ ++
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITME 101
Query: 105 VLD 107
V +
Sbjct: 102 VYE 104
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 34.4 bits (78), Expect = 0.002
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
I WQ DK I + + + ++ + E G Y C +
Sbjct: 35 EILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 86
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.0 bits (78), Expect = 0.002
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 73 LRISEAFPEDEGQYKC-IATNQGGQVVLTANLKVL 106
LR+ EDEG Y C T G + L+VL
Sbjct: 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 34.8 bits (79), Expect = 0.002
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 31 AGQVESTARLTVKTI--NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ + + LT IKW K II P + + G Y+C
Sbjct: 118 GSRGDGSVLLTCGLTDKTIKWLKDGSIISPL-------NATKNTWNLGNNAKDPRGTYQC 170
Query: 89 IATNQGGQVV 98
+ +
Sbjct: 171 QGAKETSNPL 180
Score = 33.7 bits (76), Expect = 0.006
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLR-ISEAFPEDEGQYKCIATNQGGQVVLTANL 103
N+KW+K + + VL+ SE ED G Y C L
Sbjct: 27 ENLKWEKNGQELPQK-------HDKHLVLQDFSEV--EDSGYYVCYTPASNKNTYLYLKA 77
Query: 104 KVLDI 108
+V
Sbjct: 78 RVGSA 82
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 34.8 bits (79), Expect = 0.002
Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 6/63 (9%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
+ W G L + D G Y C G+ T +
Sbjct: 35 DNATVHWVLRKPAAGSHPS---RWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAGTVH 88
Query: 103 LKV 105
L V
Sbjct: 89 LLV 91
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 33.8 bits (77), Expect = 0.004
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 41 TVKTINIKWQKGDKIIKPSKYFQMSKEGD-SYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
++ I K +I + SY L++S ED G Y+ + + +
Sbjct: 39 SLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLS 98
Query: 100 TANLKVLD 107
+ L++L
Sbjct: 99 SYTLRILR 106
Score = 33.8 bits (77), Expect = 0.004
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 23/123 (18%)
Query: 7 TASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLT----VKTINIKW------------- 49
+ SL L+ ED+G + + S+ L ++ I +
Sbjct: 69 SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELH 128
Query: 50 -----QKGDKIIKPSKYFQMSKEGDSYVLRISEAFP-EDEGQYKCIATNQGGQVVLTANL 103
+ D + + L +S E Y CIA N + + +
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSA 188
Query: 104 KVL 106
+ L
Sbjct: 189 QKL 191
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 33.3 bits (76), Expect = 0.007
Identities = 7/54 (12%), Positives = 11/54 (20%), Gaps = 3/54 (5%)
Query: 45 INIKWQKGDK---IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ W + P + S VL + C A
Sbjct: 37 VTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPES 90
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 33.4 bits (76), Expect = 0.007
Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 5/55 (9%)
Query: 45 INIKWQKGDK-----IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
+ W D + S L I E + +KC +
Sbjct: 51 VRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA 105
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 32.7 bits (74), Expect = 0.012
Identities = 6/40 (15%), Positives = 11/40 (27%)
Query: 67 EGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
G ++ R E E Q C + ++
Sbjct: 47 RGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTF 86
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 32.7 bits (74), Expect = 0.012
Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 19/93 (20%)
Query: 33 QVESTARLTVKTINIKWQKGDKIIKPSKY------------------FQMSKEGDSYVLR 74
++ + W + + + + ++ E LR
Sbjct: 22 YLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLR 81
Query: 75 ISEAFPEDEGQYKC-IATNQGGQVVLTANLKVL 106
+ EDEG Y C T G + L+VL
Sbjct: 82 MFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVL 114
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 32.1 bits (72), Expect = 0.014
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 46 NIKWQK--GDKIIKPSKYFQMSKEGDS---YVLRISEAFPEDEGQYKCIATNQGGQVV 98
++ W K G +K KE + ++L P D G Y+C A Q +
Sbjct: 43 HVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE 100
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 32.2 bits (73), Expect = 0.014
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
LRI DEG Y C + Q LKV D
Sbjct: 87 LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 24.1 bits (52), Expect = 8.8
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+L + D G +T + + Q E+ L V+
Sbjct: 85 VALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE 120
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 31.9 bits (72), Expect = 0.016
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 73 LRISEAFPEDEGQYKC-IATNQGGQVVLTANLKV 105
L + EDEG Y C AT G V L+V
Sbjct: 95 LALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.8 bits (72), Expect = 0.019
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
+ ++ D G Y+C G +L VL
Sbjct: 91 INVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 124
Score = 26.0 bits (57), Expect = 1.8
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
AS+ + D G + + + G L V
Sbjct: 89 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 32.3 bits (73), Expect = 0.022
Identities = 10/64 (15%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 46 NIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG--GQVVLTANL 103
I W+ I +Y +++ S Q C G Q V +
Sbjct: 41 YIVWKTNHFTIPKEQYTIINRTASSVTF---TDIASLNIQLTCNILTFGQLEQNVYGITI 97
Query: 104 KVLD 107
Sbjct: 98 ISGL 101
Score = 28.0 bits (62), Expect = 0.54
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
SL +T Y + A G + T T
Sbjct: 558 SLTSDTLYM-----VRMAAYTDEGGKDGP-EFTFTT 587
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 31.0 bits (70), Expect = 0.027
Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 33 QVESTARLTVKTINIKWQKGDKII-------KPSKYFQMSK-------EGDSYVLRISEA 78
Q ++ ++ + + WQ + ++ K SK + DS+ LR+
Sbjct: 17 QFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNL 76
Query: 79 FPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+D+G Y+CI ++ ++ + +
Sbjct: 77 QIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 31.0 bits (70), Expect = 0.027
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMSK-EGDSYVLRISEAFPEDEGQYKC-IATNQGGQVVLTANLK 104
++W SK+ + + S L IS+ ED Y + G + L+
Sbjct: 48 VEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQ 107
Query: 105 VLD 107
VLD
Sbjct: 108 VLD 110
Score = 30.7 bits (69), Expect = 0.037
Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTV 42
+ + +L ++ +ED+ + +R + G + +L V
Sbjct: 67 RLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.6 bits (71), Expect = 0.030
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 72 VLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+ I P D G + C G V N+ V
Sbjct: 386 IFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISV 419
Score = 31.6 bits (71), Expect = 0.031
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVK 43
+ A ++ DSG++ AG VE ++VK
Sbjct: 383 SVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVK 420
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 31.2 bits (70), Expect = 0.039
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
K GD LR+ E+ G+Y+C + T L+V+
Sbjct: 77 LKSGD-ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV 117
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 30.4 bits (68), Expect = 0.043
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 46 NIKWQKGDKII--------KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
++W++G ++ S F++ GD L+I +D G Y + G
Sbjct: 29 EVRWERGSTLVAEFKRKPFLKSGAFEILANGD---LKIKNLTRDDSGTYNVTVYSTNGTR 85
Query: 98 VL--TANLKVLD 107
+L +L++L+
Sbjct: 86 ILDKALDLRILE 97
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 30.8 bits (70), Expect = 0.049
Identities = 19/109 (17%), Positives = 34/109 (31%), Gaps = 12/109 (11%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQ----VESTARLTVKTINIKWQKGDKIIK--- 57
GT +++ LF + V + + + W+ +K
Sbjct: 123 GTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGV 182
Query: 58 ----PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
PSK +K S L ++ + Y C T++G V T
Sbjct: 183 ETTKPSK-QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 230
Score = 28.5 bits (64), Expect = 0.30
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
SK G S L IS EDE Y C
Sbjct: 85 SKSGTSASLAISGLRSEDEADYYC 108
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 30.4 bits (69), Expect = 0.062
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 4/56 (7%)
Query: 49 WQKGDKIIKPSKY----FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
++G + + ++ G Y L I ED G Y C +T
Sbjct: 51 RKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCKQKCDSANHNVT 106
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 30.8 bits (69), Expect = 0.064
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 5/60 (8%)
Query: 41 TVKTINIKWQKGDK-----IIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ T+ + W + + + + + L + + Y+C T+
Sbjct: 143 SKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL 202
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 30.3 bits (68), Expect = 0.093
Identities = 8/64 (12%), Positives = 21/64 (32%), Gaps = 5/64 (7%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGD-----SYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
+ W + +K ++ + VL + + +YKC +N+ +
Sbjct: 58 VKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI 117
Query: 100 TANL 103
+
Sbjct: 118 EKTI 121
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.8 bits (66), Expect = 0.093
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 71 YVLRISEAFPEDEGQYKCIATNQGGQV 97
+VL D G Y C +
Sbjct: 79 FVLHFKPIHLSDNGSYSCSTNFNSQVI 105
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 30.3 bits (67), Expect = 0.097
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
T L +T Y F + A S G+V S LT++T
Sbjct: 203 TFKKLNRHTIYN-----FKIAAKYSNGEVSSKESLTLRT 236
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 30.0 bits (67), Expect = 0.10
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 61 YFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+ M + YVL +++ E+EG Y C +
Sbjct: 80 FSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS 111
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.5 bits (66), Expect = 0.11
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 52 GDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATN 92
+K+ + M + YVL +++ E+EG Y C +
Sbjct: 66 DEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS 106
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D
3kps_D 3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.6 bits (66), Expect = 0.13
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQG 94
++++ S L + A D Y CI G
Sbjct: 61 LAIAEDRKSSTLILHRATLRDAAVYYCILPLAG 93
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 28.8 bits (65), Expect = 0.14
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 55 IIKPSKYF-QMSKEGDSYVLRISEAFPEDEGQYKC 88
I +Y + + +S L I + ED G YKC
Sbjct: 49 ISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKC 83
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 29.4 bits (65), Expect = 0.15
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
LR++ P+D G+Y C + + K
Sbjct: 94 LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 29.5 bits (66), Expect = 0.15
Identities = 8/66 (12%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGD-----SYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
+ W + +K ++ + VL + + +YKC +N+ +
Sbjct: 37 VKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPI 96
Query: 100 TANLKV 105
+
Sbjct: 97 EKTISK 102
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 29.4 bits (66), Expect = 0.16
Identities = 6/57 (10%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ + + + + + + + I + GQY CI
Sbjct: 26 QGNYGAVEYQLHF-EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL 81
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 29.3 bits (65), Expect = 0.16
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLK 104
LRI D G+Y C + LK
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELK 116
Score = 27.4 bits (60), Expect = 0.96
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 2/65 (3%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDS--YVLRISEAFPEDEGQYKCIATNQGGQVVLTAN 102
I+W P+ + +G V C + + TA+
Sbjct: 149 PQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTAS 208
Query: 103 LKVLD 107
+ + D
Sbjct: 209 ISIAD 213
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 28.6 bits (64), Expect = 0.18
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L N+TY ++A N G + L ++T
Sbjct: 72 LHFNSTYN-----ARVKAFNKTGVSPYSKTLVLQT 101
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 28.5 bits (64), Expect = 0.21
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
N+ Y F L A + G STA ++ +T
Sbjct: 80 NSLYY-----FRLAARSPQGLGASTAEISART 106
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo
sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A*
2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L
2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L*
3qeg_L ...
Length = 216
Score = 29.2 bits (66), Expect = 0.21
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F SK G S L I+ DE Y C
Sbjct: 63 FSGSKSGTSATLGITGLQTGDEADYYC 89
Score = 27.2 bits (61), Expect = 0.96
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 43 KTINIKWQKGDKII-------KPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ ++W+ + + + + S S L +S+A E Y C T+QG
Sbjct: 144 REAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL 203
Query: 96 QVVLTANLK 104
+T +
Sbjct: 204 SSPVTKSFN 212
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 28.5 bits (64), Expect = 0.22
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATN--------QGGQVVLTANLKVLD 107
+ + I + D G Y C A + + L ++L+
Sbjct: 67 LPNRHDFHMNILDTRRNDSGIYLCGAISLHPKLKIEESPGAELVVTERILE 117
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 29.0 bits (64), Expect = 0.23
Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 4 EGTTA--SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKIIKPSKY 61
EG +A S LN E G +A A +S ++K + QK K
Sbjct: 9 EGESAEFSFPLNLGEESLQGELRWKA-EKAPSSQSWITFSLKNQKVSVQKSTSNPK---- 63
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLDI 108
FQ+S E L+I + + G T G + NL V+ +
Sbjct: 64 FQLS-ETLPLTLQIPQVSLQFAGSGNLTLTLDRGILYQEVNLVVMKV 109
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.8 bits (64), Expect = 0.23
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 24/86 (27%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYV----------------------LRISEAFPED 82
I+ W+ + + + +G Y+ + I D
Sbjct: 33 ISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSD 92
Query: 83 EGQYKCIATNQGGQVVLTA--NLKVL 106
G + C N V T+ L V
Sbjct: 93 NGTFTCDVKNPPDIVGKTSQVTLYVF 118
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 29.0 bits (65), Expect = 0.23
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ T++ + K ++ P + + I + G+Y+C + G
Sbjct: 27 QGTLEAREYRLDK-EESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG 82
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 28.7 bits (64), Expect = 0.27
Identities = 7/68 (10%), Positives = 20/68 (29%), Gaps = 5/68 (7%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGD-----SYVLRISEAFPEDEGQYKCIATNQGGQV 97
+ I W + + ++ ++ + L I ++KC N+
Sbjct: 43 PDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS 102
Query: 98 VLTANLKV 105
+ +
Sbjct: 103 PIERTISK 110
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment,
immune system; HET: PG4; 1.60A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L*
1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L*
1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K*
1mfe_L* 1mfb_L* ...
Length = 212
Score = 28.4 bits (64), Expect = 0.30
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
F S GD L I+ A EDE Y C + V
Sbjct: 64 FSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLV 99
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 28.7 bits (63), Expect = 0.33
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKV 105
+++ Q C + GQ L V
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTV 82
Score = 24.8 bits (53), Expect = 6.4
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 3 FEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLT--------VKTINIKWQKGDK 54
FE T+A L T +V++ + V + GD+
Sbjct: 173 FENTSAPYQLQTFVL--PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Query: 55 IIKPSKYFQMSKEGDSYVLRISEAF-PEDEGQYK--CIATNQGGQVVLTANLKV 105
+ P+ ++ DS+ + S + EDEG + C + +
Sbjct: 231 RLNPT----VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 280
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 28.6 bits (64), Expect = 0.35
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L TTY L A+N G E +A KT
Sbjct: 75 LKPETTYA-----VRLAALNGKGLGEISAASEFKT 104
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 27.7 bits (62), Expect = 0.38
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L TTY ++A++ G + + T
Sbjct: 68 LSPATTYY-----CRVQALSVVGAGPFSEVVACVT 97
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.9 bits (62), Expect = 0.39
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTV 42
E +L ++ +ED G + +R V + E L V
Sbjct: 67 YLEENNGALHISNVRKEDKGTYYMR-VLRETENELKITLEV 106
Score = 25.6 bits (56), Expect = 2.4
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 70 SYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ L IS ED+G Y + + L L+V D
Sbjct: 72 NGALHISNVRKEDKGTYYM-RVLRETENELKITLEVFD 108
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A
{Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 27.6 bits (62), Expect = 0.42
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+KE S+ L+ + D Y C + G +T
Sbjct: 64 TYNKEATSFHLQKASVQESDSAVYYCALSENYGNEKIT 101
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 27.8 bits (62), Expect = 0.45
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L TTY L A+N G E +A KT
Sbjct: 74 LKPETTYA-----VRLAALNGKGLGEISAASEFKT 103
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 28.2 bits (63), Expect = 0.46
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F SK G++ L +S +DE Y C
Sbjct: 59 FSGSKSGNTASLTVSGLQTDDEAVYYC 85
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 28.3 bits (63), Expect = 0.46
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYV-LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
K PS+ +G S I G Y+C + L+A LD
Sbjct: 151 LHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLD 210
Query: 108 I 108
I
Sbjct: 211 I 211
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 27.6 bits (61), Expect = 0.50
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L T Y+ F L+ + +G+ E + ++V T
Sbjct: 82 LEPRTLYK-----FRLKVTSPSGEYEYSPVVSVAT 111
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 27.8 bits (62), Expect = 0.50
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+L Y F + A N G ES+ + V T
Sbjct: 80 NLKPEAMYT-----FRVVAYNEWGPGESSQPIKVAT 110
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 27.7 bits (62), Expect = 0.53
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G+ L IS+A DE Y C
Sbjct: 61 FSGSNSGNMATLTISKAQAGDEADYYC 87
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.0 bits (62), Expect = 0.54
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+S+ L + E +D Y C GG
Sbjct: 62 FLSRSKGYSYLLLKELQMKDSASYLCAVQASGG 94
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120,
broadly neutralizing antibody, 3B3 single chain variable
fragment, immune system; 2.50A {Homo sapiens}
Length = 256
Score = 28.1 bits (63), Expect = 0.55
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ F S G + L I+ PED Y C
Sbjct: 208 SDR-FSGSGSGTDFTLTITRVEPEDFALYYC 237
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm,
mouse IGG, zinc-finger, DNA-binding, RNA-binding,
tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC;
1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 27.9 bits (62), Expect = 0.55
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGD-----SYVLRISEAFPEDEGQYKCIATNQG 94
+ W D + ++ ++ + L I + ++KC +
Sbjct: 35 PEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAA 91
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 27.2 bits (61), Expect = 0.55
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Query: 5 GTTASLVLNTTYEEDSGL-------FTLRAVNSAGQV-ESTARLTVKT 44
A+ V TT SGL FT++A ++AG V ++ ++VKT
Sbjct: 42 TALATTVTGTTAT-ISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 27.8 bits (61), Expect = 0.56
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKVL 106
+ +C T G Q + +N+ V
Sbjct: 60 SHDTVLQCHFTCSGKQESMNSNVSVY 85
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 27.9 bits (62), Expect = 0.58
Identities = 7/68 (10%), Positives = 19/68 (27%), Gaps = 1/68 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVV 98
+ + + + + + + + I + GQY CI
Sbjct: 29 QGNYGAVEYQLHF-EGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSE 87
Query: 99 LTANLKVL 106
+ L ++
Sbjct: 88 PSNLLDLV 95
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 27.6 bits (61), Expect = 0.61
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 47 IKWQKGDKIIKPSKY-FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ G ++ K + FQ L I+ A P D G Y C G
Sbjct: 47 VTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGN 97
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 28.0 bits (62), Expect = 0.61
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYV-LRISEAFPEDEGQYKCIATNQGGQV 97
V + + + +G S IS + G Y+C +
Sbjct: 30 WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPY 89
Query: 98 VLTANLKVLDI 108
++A LDI
Sbjct: 90 QVSAPSDPLDI 100
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 27.5 bits (61), Expect = 0.64
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQ 96
L + + PED G Y
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSN 104
>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder,
SCFV, picomolar binder, immune system; 2.35A {Mus
musculus} SCOP: b.1.1.1 PDB: 1p4i_L
Length = 135
Score = 27.2 bits (61), Expect = 0.68
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
F S GD L I+ A EDE Y C V
Sbjct: 69 FSGSLIGDKAALTITGAQTEDEAIYFCALWYSNHWV 104
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 27.2 bits (60), Expect = 0.70
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVV 98
L I + D Y C G V
Sbjct: 83 LHIRDVRGHDASIYVCRVEVLGLGVG 108
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 27.2 bits (60), Expect = 0.71
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
L I D G Y C+ G + L+V
Sbjct: 76 LTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEV 108
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 27.5 bits (61), Expect = 0.72
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ T++ + K + +P + + I G+Y+C + G
Sbjct: 27 QGTLEAQEYRLVK-EGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG 82
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 27.7 bits (60), Expect = 0.73
Identities = 8/35 (22%), Positives = 10/35 (28%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
+ P EG Y Q +T L V
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK 290
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 27.0 bits (60), Expect = 0.74
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+L+ T Y F + A N G ES+A L V+T
Sbjct: 81 NLMPATVYI-----FRVMAQNKHGSGESSAPLRVET 111
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 27.6 bits (62), Expect = 0.75
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + L IS A PEDE Y C
Sbjct: 60 FSGSTSGTTATLTISGAQPEDEAAYYC 86
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol,
oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Length = 216
Score = 27.6 bits (62), Expect = 0.75
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W G IKP+ +YF+
Sbjct: 192 NWTPGAATIKPTVEDSKEYFE 212
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 27.7 bits (61), Expect = 0.76
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 62 FQMSK-EGDSYVLRISEAFPEDEGQYKCIATNQGG 95
F + + +G + L+I ED Y C ++ G
Sbjct: 66 FSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGA 100
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex,
oxidoreductase; 2.95A {Helicobacter pylori} SCOP:
c.47.1.10
Length = 198
Score = 27.6 bits (62), Expect = 0.76
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+KGDK +K + +Y +
Sbjct: 172 GWRKGDKGMKATHQGVAEYLK 192
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC,
oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB:
2h66_A
Length = 213
Score = 27.6 bits (62), Expect = 0.78
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
WQKG +KPS +Y
Sbjct: 191 NWQKGKVSMKPSEEGVAQYLS 211
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 27.7 bits (62), Expect = 0.79
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S+ G++ L I+ PEDE Y C
Sbjct: 202 FSASRSGNTASLTITGLQPEDEADYYC 228
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics,
SGC, structural genomics consortium, oxidoreductase;
2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Length = 192
Score = 27.5 bits (62), Expect = 0.79
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
WQKG + +KPS KY
Sbjct: 170 NWQKGKESMKPSEEGVAKYLS 190
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 27.3 bits (60), Expect = 0.80
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 47 IKWQKGDKIIKPSKYF--QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+K+ GD +++ F + SK S+ LR + D Y C + +G
Sbjct: 56 LKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGT 106
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 27.6 bits (61), Expect = 0.80
Identities = 13/71 (18%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 39 RLTVKTINIKWQKGDKIIKPSKYFQMSKEGDSYV-LRISEAFPEDEGQYKCIATNQGGQV 97
V+ + + K +G S I + G Y+C +
Sbjct: 29 WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPY 88
Query: 98 VLTANLKVLDI 108
L+A LDI
Sbjct: 89 QLSAPSDPLDI 99
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2,
alzheimer'S disease, immunotherapies, APP, immune
system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B*
1h3p_L
Length = 252
Score = 27.3 bits (61), Expect = 0.81
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + LRIS ED G Y C
Sbjct: 103 SGSGTDFTLRISRVEAEDLGVYYC 126
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase;
2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Length = 202
Score = 27.2 bits (61), Expect = 0.82
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+ GDK +KP +YF
Sbjct: 176 NWKPGDKTMKPDPEKSKEYFG 196
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 27.4 bits (61), Expect = 0.84
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + L+IS ED G Y C
Sbjct: 107 SGSGTDFTLKISRVEAEDLGIYYC 130
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 27.5 bits (61), Expect = 0.89
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 9 SLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
SL +T Y + A G + T T
Sbjct: 259 SLTSDTLYM-----VRMAAYTDEGGKDGP-EFTFTT 288
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus
musculus}
Length = 233
Score = 27.2 bits (61), Expect = 0.94
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G +V I ED Y C
Sbjct: 84 FSSSGYGTDFVFTIENMLSEDVADYYC 110
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 27.2 bits (61), Expect = 0.96
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 61 YFQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + L+IS ED G Y C
Sbjct: 66 RFSGSGSGTDFTLKISRVEAEDLGIYYC 93
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B*
1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B*
2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B*
3bcc_B* ...
Length = 439
Score = 27.2 bits (61), Expect = 0.96
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN 46
N +Y DSGLF ++ A + +
Sbjct: 313 NASYS-DSGLFGFYTISQAASAGDVIKAAYNQVK 345
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 0.99
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 42 VKTINIKWQKGDKIIKPSKYFQ--MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVL 99
+ + + + + G +Y L IS+ ED G YK Q
Sbjct: 41 AYVTPGDSETAPVVTVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTT 100
Query: 100 T 100
T
Sbjct: 101 T 101
Score = 26.4 bits (58), Expect = 1.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 1 MSFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTAR--LTV 42
+ G +LV++ ED+G + A +T R L +
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 27.2 bits (61), Expect = 1.0
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W IKP +YF+
Sbjct: 196 NWTPESPTIKPHPTASREYFE 216
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 26.7 bits (59), Expect = 1.1
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+TTY + +R + G + +T
Sbjct: 72 DTTY-----IVRVRTLTPLGPGPFSPDHEFRT 98
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 27.1 bits (60), Expect = 1.1
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 5/55 (9%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSY-----VLRISEAFPEDEGQYKCIATNQG 94
+ W + +K ++ +S VL + D +YKC +N+
Sbjct: 353 VKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKA 407
Score = 25.6 bits (56), Expect = 4.1
Identities = 14/34 (41%), Positives = 15/34 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
F SK G S L IS EDE Y C + N
Sbjct: 61 FSGSKSGTSASLAISGLEAEDESDYYCASWNSSD 94
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 27.0 bits (60), Expect = 1.1
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 51 KGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
DK +K L I+++ P D Y C A +
Sbjct: 179 VSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFC-AAIDTNAYKVI 227
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 26.6 bits (59), Expect = 1.1
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 6 TTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
T L + Y F + A G E+ L V T
Sbjct: 88 TATGLKPESVYL-----FRITAQTRKGWGEAAEALVVTT 121
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 110
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ 33
L+ TY F LRA N G
Sbjct: 72 LLPGKTYS-----FRLRAANKMGF 90
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 26.6 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINI 47
TTY L A+N G E +A KT +
Sbjct: 76 ETTYA-----VRLAALNGKGLGEISAASEFKTQPV 105
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 26.2 bits (58), Expect = 1.2
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 6 TTASLVLNTTYEEDSGL-------FTLRAVNSAGQVESTARLTVKT 44
T A+ + +T Y D+G+ + + AV++ + ++A ++
Sbjct: 49 TIATNITSTNYT-DTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 26.4 bits (58), Expect = 1.3
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
L I + D G Y C G +
Sbjct: 75 LTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQ 108
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity,
multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1
PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L*
1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Length = 120
Score = 26.3 bits (59), Expect = 1.3
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
F S G+ L I+ A EDE Y C V
Sbjct: 64 FSGSLIGNKAALTITGAQTEDEAIYFCALWYSNHLV 99
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 26.6 bits (59), Expect = 1.3
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ-VESTARLTVKT 44
L+ N +Y F +RA + G E +T+++
Sbjct: 80 LLPNHSYV-----FRVRAQSQEGWGREREGVITIES 110
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 26.5 bits (59), Expect = 1.3
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
T Y F + A N G ST + V+T
Sbjct: 81 YTEYS-----FRVVAYNKHGPGVSTPDVAVRT 107
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 26.5 bits (58), Expect = 1.3
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 8 ASLVLNTTYEEDSGLFTLRAVNSAGQVES-TARLTV 42
ASL++ + D+G +TL + S E T + V
Sbjct: 72 ASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRV 107
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_A 1hr8_A* 1hr9_A*
Length = 475
Score = 26.9 bits (60), Expect = 1.3
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINIKWQKGDKII 56
N +Y DSG+F + + + + + D +
Sbjct: 307 NHSYS-DSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRL 349
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;
anti-CD3epsilon, T-cell receptor, signalling, IMMU;
2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B
3ldb_B*
Length = 213
Score = 26.8 bits (60), Expect = 1.4
Identities = 9/24 (37%), Positives = 9/24 (37%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G IS ED G Y C
Sbjct: 65 SGSGRDSSFTISSLESEDIGSYYC 88
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold,
transferase; 2.00A {Helicobacter pylori}
Length = 315
Score = 26.8 bits (60), Expect = 1.4
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 35 ESTARLTVKTINIKWQK------GDKIIKPSKYFQMSKEGDSYVLRI-SEA 78
++T R + +IN + GD SK F + + + S A
Sbjct: 82 KATMRRKLPSINALFGNFNAVMLGDVFY--SKAFFELSKMGELIAQALSNA 130
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.8 bits (59), Expect = 1.4
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 30/127 (23%)
Query: 5 GTTASLVLNTTYEEDSGLFTLRAVNSAGQVE--STARLTVKTINIKW----------QKG 52
T V++ +G + + + T L V + K G
Sbjct: 61 ETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPG 120
Query: 53 DKII-------KPSKYFQMSKEGDS-----------YVLRISEAFPEDEGQYKCIATNQG 94
+ I P F ++KEG+ + G Y+C
Sbjct: 121 ENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNR 180
Query: 95 GQVVLTA 101
+ +
Sbjct: 181 SPYLWSF 187
Score = 26.0 bits (57), Expect = 2.9
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 49 WQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVL 106
K + + + E D I G+Y+C + + L+++
Sbjct: 43 IIKNSTYREIGRRLKFWNETDP-EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELV 99
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 26.7 bits (59), Expect = 1.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L L+T Y F ++A NS G + + +T
Sbjct: 173 LTLDTPYY-----FKIQARNSKGMGPMSEAVQFRT 202
Score = 24.4 bits (53), Expect = 9.7
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 10/46 (21%)
Query: 4 EGTTASLVL-----NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
TT S ++ NT YE F++ + T
Sbjct: 60 NATTLSYLVTGLKPNTLYE-----FSVMVTKGRRSSTWSMTAHGTT 100
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 26.2 bits (58), Expect = 1.5
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L Y + ++ GQ + L V+T
Sbjct: 82 LNPGCFYR-----LRVYCISDGGQSAVSESLLVQT 111
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 26.7 bits (59), Expect = 1.5
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQ-VESTARLTVKT 44
+ Y +T++A N AG E A + + T
Sbjct: 170 SQPYR-----YTVKARNGAGWGPEREAIINLAT 197
Score = 25.1 bits (55), Expect = 5.6
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 3 FEGTTASLVL-----NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+ S+ L YE + A + G+ ++ ++ +T
Sbjct: 53 LDSKVPSVELTNLYPYCDYE-----MKVCAYGAQGEGPYSSLVSCRT 94
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 26.6 bits (58), Expect = 1.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 81 EDEGQYKCIATNQGGQVVLTANLKV 105
+++ Q C + GQ L V
Sbjct: 58 QEDSQPMCYSNCPDGQSTAKTFLTV 82
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system;
2.21A {Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 26.1 bits (58), Expect = 1.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
K S+ LRIS+ ED G YKC A
Sbjct: 60 DKGSKSFSLRISDLRVEDSGTYKCQADYSPS 90
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme,
antigen, allergen, antimic bacteriolytic enzyme,
glycosidase, hydrolase; 1.20A {Mus musculus} PDB:
3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A
1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L
1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Length = 213
Score = 26.4 bits (59), Expect = 1.6
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + L I+ ED G Y C
Sbjct: 65 SGSGTDFTLSINSVETEDFGMYFC 88
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A
{Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A
1c5d_L 1bfo_A 3b9k_L*
Length = 210
Score = 26.4 bits (59), Expect = 1.7
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + L I +D Y C
Sbjct: 64 SGSGTDFTLTIDPVEADDTAIYFC 87
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 26.4 bits (59), Expect = 1.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + L IS+ D Y C
Sbjct: 65 SGSGTDFTLTISDLECADAATYYC 88
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin
dependant, mitochondrial, antioxidant, oxidoreductase,
redox-active center; 1.78A {Plasmodium falciparum}
Length = 221
Score = 26.5 bits (59), Expect = 1.7
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+KG K KP+ Y
Sbjct: 195 NWKKGQKAFKPTTESLIDYMN 215
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble
protein, KD, protein engineering, immunotherapy,
immune-suppressor, immune system; 2.10A {Homo sapiens}
PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Length = 114
Score = 26.1 bits (58), Expect = 1.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F + GD++VL +S+ E+EG Y C
Sbjct: 68 FSGKRLGDTFVLTLSDFRRENEGYYFC 94
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T
cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 26.5 bits (58), Expect = 1.8
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
SKE L I +A ED G Y C A
Sbjct: 65 SKERRYSTLHIRDAQLEDSGTYFCAADTWHI 95
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 25.9 bits (57), Expect = 1.9
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+ + + L T+Y+ ++ N G+ E + + +T
Sbjct: 68 RYWHSISHLQPETSYD-----IKMQCFNEGGESEFSNVMICET 105
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 26.4 bits (58), Expect = 1.9
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
++ + L I + PED Y C
Sbjct: 64 TLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFY 98
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A
{Larimichthys crocea}
Length = 240
Score = 26.5 bits (59), Expect = 2.0
Identities = 7/21 (33%), Positives = 8/21 (38%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+ G I P KYF
Sbjct: 217 GWKPGSDTIIPDPSGKLKYFD 237
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic
reticulum, oxidoreductase; HET: CSO; 1.91A {Homo
sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A
3tks_A 3tkr_A 3tks_C
Length = 254
Score = 26.2 bits (58), Expect = 2.0
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+ G + I P KYF
Sbjct: 231 GWKPGSETIIPDPAGKLKYFD 251
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 26.7 bits (58), Expect = 2.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+TTY ++A+ GQ + +T
Sbjct: 505 DTTYL-----VQVQALTQEGQGAGSKVHEFQT 531
Score = 25.1 bits (54), Expect = 5.3
Identities = 6/36 (16%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTI 45
L + Y FT+ A N + ++ ++
Sbjct: 407 LEPHMNYT-----FTVEARNGVSGLVTSRSFRTASV 437
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 26.5 bits (58), Expect = 2.0
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 58 PSKYFQMSKEGDS-YVLRISEAFPEDEGQYKCIATNQGGQ 96
K F +S L I + D Y C ++ Q
Sbjct: 87 TEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQ 126
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 26.4 bits (58), Expect = 2.2
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 5/58 (8%)
Query: 45 INIKWQKGDKIIKPSKY-FQMSKEGDSY----VLRISEAFPEDEGQYKCIATNQGGQV 97
I +KW K + + E SY ++ + Q C + Q
Sbjct: 149 ITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG 206
Score = 25.3 bits (55), Expect = 4.6
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
+E + + IS P D G Y C
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYC 91
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC
I, secreted, immune system; 2.10A {Ctenopharyngodon
idella}
Length = 97
Score = 25.8 bits (57), Expect = 2.2
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 43 KTINIKWQKGDKIIKPSKYFQMSKEGD-SYVLRISEAF-PEDEGQYKC 88
I+I+ K ++I ++ ++ E + L S +F PE +Y C
Sbjct: 33 PDISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSFKPEKSDEYSC 80
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 25.8 bits (57), Expect = 2.2
Identities = 6/41 (14%), Positives = 15/41 (36%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
++ + + + + D G Y C T G + + +
Sbjct: 68 NQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNI 108
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 26.0 bits (57), Expect = 2.2
Identities = 7/38 (18%), Positives = 11/38 (28%)
Query: 53 DKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIA 90
+K P + I E G+Y+C
Sbjct: 40 EKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY 77
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 26.3 bits (57), Expect = 2.3
Identities = 8/62 (12%), Positives = 17/62 (27%), Gaps = 6/62 (9%)
Query: 44 TINIKWQKGDKIIKPSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANL 103
+ W + + S L ++ + C QG QV +
Sbjct: 156 PLTFSWTGNALSPLDPETTRSS------ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209
Query: 104 KV 105
++
Sbjct: 210 QL 211
Score = 25.6 bits (55), Expect = 4.0
Identities = 7/24 (29%), Positives = 8/24 (33%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQ 96
L I +A ED G Y
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDV 107
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 25.9 bits (57), Expect = 2.3
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATN--------QGGQVVLTANLKVLD 107
+ + I + D G Y C A + + L ++L+
Sbjct: 77 LPNRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIEESPGAELVVTERILE 127
>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B,
IG-beta, BCR, immunoglobulin domain, protein binding;
3.20A {Homo sapiens}
Length = 134
Score = 25.8 bits (57), Expect = 2.3
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
+ S+ L I ED G Y C
Sbjct: 71 MEESQNESLATLTIQGIRFEDNGIYFC 97
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A
{Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A
3hy2_A*
Length = 197
Score = 26.0 bits (58), Expect = 2.3
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+ G IKP+ +YF
Sbjct: 174 GWKPGSDTIKPNVDDSKEYFS 194
>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase;
3.2A {Crithidia fasciculata} SCOP: c.47.1.10
Length = 188
Score = 26.0 bits (58), Expect = 2.4
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 48 KWQKGDKIIKPS 59
W+KGD K
Sbjct: 176 NWKKGDAKKKEG 187
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics
consortium, SGC; 1.80A {Homo sapiens}
Length = 211
Score = 26.0 bits (58), Expect = 2.4
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 48 KWQKGDKIIKPS-----KYFQ 63
W+ G + I P KYF
Sbjct: 188 GWKPGSETIIPDPAGKLKYFD 208
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody,
virus/viral protein/antibiotic complex; 2.30A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.1
Length = 247
Score = 26.1 bits (58), Expect = 2.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + L IS PED Y C
Sbjct: 196 FSGSGSGTDFTLTISRLEPEDFAVYYC 222
>1iq6_A (R)-hydratase, (R)-specific enoyl-COA hydratase;
polyhydroxyalkanoate, aeromonas caviae, the hydratase 2
motif, lyase; 1.50A {Aeromonas punctata} SCOP: d.38.1.4
Length = 134
Score = 25.7 bits (57), Expect = 2.6
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 87 KCIATNQGGQVVLTANLKVL 106
QGG + +T V
Sbjct: 113 TTRIFTQGGALAVTGEAVVK 132
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 25.8 bits (57), Expect = 2.6
Identities = 5/32 (15%), Positives = 7/32 (21%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+Y F + A N G
Sbjct: 72 GCSYY-----FRVLAENEYGIGLPAETAESVK 98
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 25.5 bits (56), Expect = 2.6
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L++NT Y + AV S G + ++ T
Sbjct: 70 LLVNTLYT-----VRVAAVTSRGIGNWSDSKSITT 99
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 25.3 bits (56), Expect = 2.7
Identities = 10/32 (31%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
T Y A N G ST +TV T
Sbjct: 71 FTEYS-----LRFLAYNRYGPGVSTDDITVVT 97
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 25.4 bits (56), Expect = 2.7
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQV 34
L + YE F + A N+AG +
Sbjct: 75 LTEDAAYE-----FRVIAKNAAGAI 94
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 25.7 bits (56), Expect = 2.7
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
L I +D G Y C G LK+
Sbjct: 74 LIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKL 106
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 25.8 bits (57), Expect = 2.7
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
PS+ F S G Y L IS PED Y C
Sbjct: 197 PSR-FSGSGSGTDYTLTISSLQPEDVATYFC 226
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 25.8 bits (57), Expect = 2.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
P + F S G + L+IS ED G Y C
Sbjct: 184 PDR-FSGSGSGTDFTLKISRVEAEDLGVYYC 213
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 25.4 bits (56), Expect = 2.8
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L L+T Y F ++A NS G + + +T
Sbjct: 76 LNLDTMYY-----FRIQARNSKGVGPLSDPILFRT 105
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle,
protein structure initiative II (PSI II), structural
genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Length = 295
Score = 26.0 bits (58), Expect = 2.9
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 10/59 (16%)
Query: 35 ESTARLTVKTINIKWQK------GDKIIKPSKYFQMSKEGDSYVLRI-SEAFPE-DEGQ 85
+ R + + K+ GD +I +K V++ +A + EG+
Sbjct: 87 QGLVRRNLPSAPEKFGPSGALLCGDYLI--AKSIAFISPYGEKVIQDFGKAGMDMAEGE 143
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 25.4 bits (56), Expect = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKC 88
+ KE D+ + ED G Y+C
Sbjct: 48 EKDKEQDAAEFSFAVTNLEDAGTYQC 73
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 25.6 bits (56), Expect = 3.1
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
NT YE F++ + + T
Sbjct: 88 NTMYE-----FSVMVTKNRRSSTWSMTAHATT 114
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 25.4 bits (56), Expect = 3.3
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ 33
L +T Y+ F + A NS G+
Sbjct: 71 LRRSTKYK-----FKVIAYNSEGK 89
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 25.4 bits (56), Expect = 3.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 73 LRISEAFPEDEGQYKCIATNQGGQ 96
LRI++ ED G Y+C GG
Sbjct: 68 LRINDLTVEDGGTYRCGLGVAGGY 91
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.5 bits (56), Expect = 3.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 70 SYVLRISEAFPEDEGQYKC 88
S+ LRIS+ ED G YKC
Sbjct: 65 SFSLRISDLRVEDSGTYKC 83
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold,
fluorogen activation, dimethylindole RE binding
protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB:
3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Length = 123
Score = 25.2 bits (56), Expect = 3.5
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F SK G S L IS EDE Y C
Sbjct: 63 FSGSKSGTSASLAISGLRSEDEADYYC 89
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 25.6 bits (56), Expect = 3.5
Identities = 4/37 (10%), Positives = 9/37 (24%)
Query: 59 SKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
++ LR+ A C ++
Sbjct: 62 PGADYLATRVTDTELRLQVANMSQGRTLYCTSSADHW 98
>3sob_L Antibody light chain; beta propeller, protein binding-immune system
complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Length = 237
Score = 25.7 bits (57), Expect = 3.5
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G + L IS PED Y C
Sbjct: 88 SGSGTDFTLTISSLQPEDFATYYC 111
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 25.8 bits (56), Expect = 3.5
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 58 PSKYFQMSK-EGDSYVLRISEAFPEDEGQYKC 88
P+ F + EG L+I D Y C
Sbjct: 86 PNDRFFAVRPEGSVSTLKIQRTERGDSAVYLC 117
>2otu_A FV light chain variable domain; antibody FV polyglutamine
complex, immune system; 1.68A {Mus musculus} PDB:
2otw_A 2gsg_A
Length = 115
Score = 25.2 bits (56), Expect = 3.6
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC 88
S G L IS PEDE Y C
Sbjct: 70 SSSGADRYLSISNIQPEDEAIYIC 93
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 25.1 bits (54), Expect = 3.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 2 SFEGTTASLVLNTTYEEDSGLFTLRAVNSAGQV 34
F+ +L + + +DSG + L N+ G+V
Sbjct: 69 GFDYGDFALSIKSAKLQDSGHYLLEITNTGGKV 101
Score = 24.3 bits (52), Expect = 7.5
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 47 IKWQKGDKIIKPSKYFQ-MSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQV 97
+ W + + + L I A +D G Y TN GG+V
Sbjct: 50 LNWYNDGPSWSNVSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKV 101
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 25.3 bits (55), Expect = 3.8
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKC-IATNQGGQVVLTANLKVL 106
+ + + +++ ED G Y C I V + ++
Sbjct: 78 DPDAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 25.2 bits (55), Expect = 3.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQ 93
+K + L I+++ P D Y C A++
Sbjct: 64 FFNKREKKFSLHIADSQPGDSATYFCAASDN 94
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune
system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A*
3uyp_A* 3uzv_B 1dzb_A
Length = 253
Score = 25.3 bits (56), Expect = 3.9
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 58 PSKY---FQMSKEGDSYVLRISEAFPEDEGQYKC 88
S F S + L I+ +D Y C
Sbjct: 191 ESGIPARFSGSGSRTDFTLTINPVEADDVATYFC 224
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 25.3 bits (55), Expect = 4.0
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 73 LRISEAFPEDEGQYKCIATNQ 93
L+I+ +D Y C T Q
Sbjct: 80 LQINTLQMDDRNHYTCEVTWQ 100
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis,
thioredoxin fold; 3.00A {Schistosoma mansoni} PDB:
3zvj_A 3zvj_D
Length = 222
Score = 25.3 bits (56), Expect = 4.1
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 48 KWQKGDKIIKPS 59
W++G IK +
Sbjct: 209 NWKRGQHGIKVN 220
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2
2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2
2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Length = 72
Score = 24.3 bits (53), Expect = 4.2
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 22 LFTLRAVNSAGQVESTARL 40
L LR S GQ+ ++
Sbjct: 32 LMELRFQASIGQLSQNHKI 50
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC,
oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP:
c.47.1.10
Length = 187
Score = 25.2 bits (56), Expect = 4.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 48 KWQKGDKIIKPS 59
KW++G + +KPS
Sbjct: 169 KWEEGGETLKPS 180
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 25.4 bits (56), Expect = 4.3
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + L+I+ ED G Y C
Sbjct: 81 FSGSGSGTDFTLKINRVEAEDLGVYFC 107
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin,
decamer, antioxidant, peroxidase, AHPF, oxidoreductase;
2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB:
1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Length = 186
Score = 25.2 bits (56), Expect = 4.5
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 48 KWQKGDKIIKPS 59
KW++G+ + PS
Sbjct: 168 KWKEGEATLAPS 179
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 24.9 bits (54), Expect = 4.5
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKV 105
+++ ++ + + + D Y C G + +T + +
Sbjct: 69 NQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 24.9 bits (54), Expect = 4.6
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L T Y F ++A+N AG S +KT
Sbjct: 87 LQSGTRYI-----FIVKAINQAGSRNSEP-TRLKT 115
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y
2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X
2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Length = 63
Score = 24.1 bits (53), Expect = 4.7
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 22 LFTLRAVNSAGQVESTARLT--------VKTI 45
F LR ++GQ++ + L VKT+
Sbjct: 25 QFNLRMQAASGQLQQSHLLKQVRRDVARVKTL 56
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 24.7 bits (54), Expect = 4.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRIS--EAFPEDEGQYKC 88
I+I K ++ ++Y MS D R+ + P Y C
Sbjct: 55 ISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYAC 100
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 24.6 bits (54), Expect = 4.9
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L T Y F +RA SAG + + V+T
Sbjct: 73 LKPGTRYV-----FQVRARTSAGCGRFSQAMEVET 102
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 24.7 bits (54), Expect = 5.0
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L Y +RA AG + + ++ +T
Sbjct: 70 LRPGMVYV-----VQVRARTVAGYGKFSGKMCFQT 99
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 24.8 bits (54), Expect = 5.0
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 65 SKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLTANLKVLD 107
E ++V+ I++ +D G+YKC + +L+VL+
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLE 111
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 25.3 bits (54), Expect = 5.1
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 5/31 (16%)
Query: 14 TTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
Y +RA + AG T
Sbjct: 861 GNYS-----VRIRATSLAGNGSWTEPTYFYV 886
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 24.8 bits (54), Expect = 5.1
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
NT YE F++ + T
Sbjct: 78 NTLYE-----FSVMVTKGRRSSTWSMTAHGTT 104
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 24.9 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G SY L IS ED Y C
Sbjct: 203 FSGSGSGTSYSLTISSMEAEDAASYFC 229
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain
FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus}
SCOP: b.1.1.1 b.1.1.1
Length = 282
Score = 25.0 bits (55), Expect = 5.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G SY L IS ED Y C
Sbjct: 222 FSGSGSGTSYSLTISRMEAEDAATYYC 248
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system,
oxidoreductase, structural proteomics in EURO spine;
2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 195
Score = 24.9 bits (55), Expect = 5.7
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 48 KWQKGDKIIKPS 59
W+KGD +
Sbjct: 177 NWRKGDPTLDAG 188
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like)
domain, histocompatibi antigen, immune system; HET:
16A; 1.32A {Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B
3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 24.6 bits (54), Expect = 5.8
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRIS--EAFPEDEGQYKC 88
I+I K ++ ++Y MS D R+ + P Y C
Sbjct: 35 ISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYAC 80
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 24.9 bits (54), Expect = 5.8
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGG 95
+ K L I+ + P D Y C G
Sbjct: 64 SLDKSSGRSTLYIAASQPGDSATYLCAVRPTSG 96
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system;
2.88A {Mus musculus}
Length = 291
Score = 25.0 bits (55), Expect = 5.9
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKC 88
P + F S G + L IS ED Y C
Sbjct: 223 PDR-FTGSGSGTDFTLTISSVQAEDLAVYYC 252
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 24.7 bits (54), Expect = 6.1
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 45 INIKWQKGDKIIKPSKYFQMSKEGDSYVLRIS--EAFPEDEGQYKC 88
I I+ K K I + MS D ++ E P + Y C
Sbjct: 55 IEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC 100
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 24.8 bits (54), Expect = 6.3
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
L T YE F L++ ++A E +A +T
Sbjct: 181 LETATMYE-----FKLQSFSAASASEFSALKQGRT 210
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 25.0 bits (54), Expect = 6.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+ + L I +A ED G Y C A + G L
Sbjct: 62 TFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLI 99
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 24.5 bits (53), Expect = 6.6
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 73 LRISEAFPEDEGQYKCIATNQG 94
L I +A D G+Y
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGN 111
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1
d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A*
1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A*
2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A*
2bcc_A* ...
Length = 446
Score = 24.9 bits (55), Expect = 7.0
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKTIN 46
N Y D+GL V ++ +
Sbjct: 311 NICYA-DTGLLGAHFVCDHMSIDDMMFVLQGQWM 343
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 24.6 bits (54), Expect = 7.1
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKC 88
F S G + L I+ ED G Y C
Sbjct: 198 FSGSGSGTEFTLSINSVETEDFGIYFC 224
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 24.6 bits (53), Expect = 7.1
Identities = 7/38 (18%), Positives = 10/38 (26%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
+ S L I+ + D Y C G
Sbjct: 64 TLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYI 101
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 24.8 bits (53), Expect = 8.2
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 4 EGTTASLVLNTTYEEDSGLFTLRAVNSAGQVESTARLTVKTINI 47
+ L+ ++ FTL A N G+ +ST + V
Sbjct: 338 TNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST--ILVNITEK 379
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 24.3 bits (53), Expect = 8.3
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQ-VESTARLTVKT 44
++ Y TL+A N+ G+ + +
Sbjct: 91 SSHYV-----ITLKAFNNVGEGIPLYESAVTRP 118
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 24.7 bits (53), Expect = 8.4
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 47 IKWQKGDKIIKPSKYFQMS--KEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
I+ D+ + S + + K S+ I+ + D Y C + L
Sbjct: 51 IRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLI 106
>3exz_A MAOC-like dehydratase; Q2RSA1_rhort, NESG, RRR103A, structur
genomics, PSI-2, protein structure initiative; 2.30A
{Rhodospirillum rubrum}
Length = 154
Score = 24.1 bits (53), Expect = 8.7
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 86 YKCIATNQGGQVVLTANLKVL 106
+ NQ G+VV + KV+
Sbjct: 121 CQSDTLNQRGEVVQRSTAKVV 141
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 24.2 bits (53), Expect = 8.9
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 10/49 (20%)
Query: 1 MSFEGTTASLVL-----NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
GT S ++ T Y F + A+ G +T L+ +T
Sbjct: 70 TLVSGTQLSQLIEGLDRGTEYN-----FRVAALTINGTGPATDWLSAET 113
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C*
3qjf_A 3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 24.3 bits (52), Expect = 9.2
Identities = 9/35 (25%), Positives = 11/35 (31%)
Query: 62 FQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ L I +A ED G Y C A
Sbjct: 63 SAFDSKERYSTLHIRDAQLEDSGTYFCAAEASNTN 97
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 24.2 bits (52), Expect = 9.6
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 63 QMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQ 96
+ + L I+ + D Y C+ +++G
Sbjct: 67 TLDADTKQSSLHITASQLSDSASYICVVSDRGST 100
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin
type III domain containing protein, cytoskeleton,
muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 23.9 bits (52), Expect = 9.6
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 5/24 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ 33
L F + VN AG+
Sbjct: 73 LPTGARIL-----FRVVGVNIAGR 91
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 24.0 bits (52), Expect = 9.7
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 5/32 (15%)
Query: 13 NTTYEEDSGLFTLRAVNSAGQVESTARLTVKT 44
+Y +RA + AG +T
Sbjct: 74 GASYL-----VQVRARSEAGYGPFGQEHHSQT 100
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain,
SLOW- type protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 23.8 bits (52), Expect = 9.9
Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ 33
L + ++AVN+AG
Sbjct: 72 LPTDAKIF-----VRVKAVNAAGA 90
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 118
Score = 23.9 bits (52), Expect = 10.0
Identities = 6/24 (25%), Positives = 7/24 (29%), Gaps = 5/24 (20%)
Query: 10 LVLNTTYEEDSGLFTLRAVNSAGQ 33
L + F L A N G
Sbjct: 80 LSPAMGCK-----FRLSARNDYGT 98
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 23.8 bits (52), Expect = 10.0
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 58 PSKYFQMSKEGDSYVLRISEAFPEDEGQYKCIATNQGGQVVLT 100
F + S L I +A ED G Y C A G L
Sbjct: 59 LKSAFDSERARYST-LHIRDAQLEDSGTYFCAAEASSGSWQLI 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.129 0.355
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,478,716
Number of extensions: 74423
Number of successful extensions: 1002
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 766
Length of query: 108
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 36
Effective length of database: 4,691,481
Effective search space: 168893316
Effective search space used: 168893316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.5 bits)