BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2152
         (205 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
 pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
 pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
           Acarbose
 pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
           Acarbose
          Length = 684

 Score = 26.9 bits (58), Expect = 8.0,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 4   DQETVYGTHDDSHIVMSEKVQSLAGSI-YQEFEKMITKYDED--VVKDLMPLVVNVLESL 60
           + E +    D+ +  +S  +     SI Y +   ++T  DE+  + K       N++E  
Sbjct: 175 NNEMLMAKRDNVYTALSSNIGWKGYSIGYYKVNDIMTDLDENKQMTKHYDSARGNIIEGA 234

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYE 89
           ++  T+N E E+ L   + D+E   T  E
Sbjct: 235 EIDLTKNSEFEIVLSFGQSDSEAAKTALE 263


>pdb|3GS3|A Chain A, Structure Of The N-Terminal Heat Domain Of Symplekin
          From D. Melanogaster
          Length = 257

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 5  QETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVK---DLMPLVVNVLESL 60
          QETV G+  +      E V SLA     E  K +  + E V K   +L+P V+NV+  L
Sbjct: 40 QETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSML 98


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.130    0.339 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,459,846
Number of Sequences: 62578
Number of extensions: 152557
Number of successful extensions: 706
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 43
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)