Query psy2152
Match_columns 205
No_of_seqs 92 out of 111
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 17:37:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09744 Jnk-SapK_ap_N: JNK_SA 100.0 3.7E-53 8E-58 350.0 19.8 157 23-179 1-157 (158)
2 KOG2077|consensus 100.0 8.8E-49 1.9E-53 373.9 16.3 168 19-186 1-168 (832)
3 PF00038 Filament: Intermediat 95.5 1.6 3.5E-05 38.4 19.3 140 21-174 165-307 (312)
4 PF06785 UPF0242: Uncharacteri 93.5 2.1 4.6E-05 40.6 13.0 93 56-159 83-175 (401)
5 PF11932 DUF3450: Protein of u 93.3 4.1 9E-05 35.4 13.9 67 101-167 39-105 (251)
6 PF00038 Filament: Intermediat 93.3 5 0.00011 35.3 14.6 75 56-130 59-136 (312)
7 PF11559 ADIP: Afadin- and alp 92.1 5.2 0.00011 32.1 13.8 31 115-145 91-121 (151)
8 PF05667 DUF812: Protein of un 92.1 12 0.00027 37.3 16.9 123 46-168 337-476 (594)
9 PRK11637 AmiB activator; Provi 91.9 9.7 0.00021 35.6 15.3 61 109-169 73-133 (428)
10 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.6 2.8 6E-05 33.4 9.8 56 49-104 8-63 (132)
11 PF03962 Mnd1: Mnd1 family; I 91.5 8 0.00017 33.0 13.5 65 111-176 103-168 (188)
12 PF08614 ATG16: Autophagy prot 91.0 5.2 0.00011 33.7 11.4 117 44-171 67-190 (194)
13 KOG1962|consensus 90.4 3.6 7.9E-05 36.5 10.2 57 109-165 149-205 (216)
14 PF08232 Striatin: Striatin fa 89.5 2.2 4.7E-05 34.6 7.6 51 107-160 21-71 (134)
15 PF07926 TPR_MLP1_2: TPR/MLP1/ 89.5 9.3 0.0002 30.4 17.6 106 59-168 11-120 (132)
16 KOG1103|consensus 88.9 24 0.00051 34.3 15.9 60 75-134 142-201 (561)
17 PF05278 PEARLI-4: Arabidopsis 88.9 18 0.00039 33.2 13.7 133 24-161 92-250 (269)
18 PF12128 DUF3584: Protein of u 88.4 39 0.00084 36.2 19.5 75 96-170 298-376 (1201)
19 TIGR03007 pepcterm_ChnLen poly 88.2 21 0.00046 33.5 14.3 56 116-171 315-380 (498)
20 TIGR00606 rad50 rad50. This fa 88.2 36 0.00079 36.6 17.5 130 30-165 956-1106(1311)
21 PRK04778 septation ring format 87.7 29 0.00064 33.9 16.3 53 53-107 265-317 (569)
22 PRK00106 hypothetical protein; 87.4 32 0.0007 34.1 18.6 24 154-177 140-163 (535)
23 PF06005 DUF904: Protein of un 87.0 10 0.00022 28.0 9.3 62 107-168 7-68 (72)
24 PF12718 Tropomyosin_1: Tropom 86.6 16 0.00035 29.8 14.2 101 60-164 37-140 (143)
25 PF09728 Taxilin: Myosin-like 86.3 26 0.00057 32.0 14.8 97 60-163 123-226 (309)
26 PF07106 TBPIP: Tat binding pr 86.3 17 0.00037 29.7 11.4 91 71-163 71-162 (169)
27 TIGR03752 conj_TIGR03752 integ 85.5 7.5 0.00016 38.1 9.9 65 59-126 60-124 (472)
28 PF02841 GBP_C: Guanylate-bind 85.4 27 0.00058 31.2 14.7 97 30-135 153-253 (297)
29 KOG0980|consensus 84.7 33 0.00071 36.4 14.4 115 67-181 328-452 (980)
30 PRK02224 chromosome segregatio 84.3 49 0.0011 33.4 16.4 14 151-164 625-638 (880)
31 KOG0161|consensus 84.2 48 0.001 37.9 16.3 65 115-179 947-1011(1930)
32 PF10212 TTKRSYEDQ: Predicted 84.0 27 0.00059 34.7 13.0 102 35-164 411-512 (518)
33 PF09726 Macoilin: Transmembra 83.9 54 0.0012 33.5 15.8 33 116-148 543-575 (697)
34 COG4026 Uncharacterized protei 83.8 27 0.00058 31.9 11.9 137 24-167 72-220 (290)
35 KOG0999|consensus 83.7 45 0.00097 34.1 14.4 154 29-182 12-185 (772)
36 PF07888 CALCOCO1: Calcium bin 83.2 53 0.0012 32.9 17.4 26 109-134 211-236 (546)
37 PF09728 Taxilin: Myosin-like 82.4 40 0.00086 30.9 18.8 137 28-164 138-297 (309)
38 TIGR02168 SMC_prok_B chromosom 82.4 59 0.0013 32.9 18.5 8 56-63 157-164 (1179)
39 PF11932 DUF3450: Protein of u 82.4 33 0.00071 29.9 13.5 50 109-158 54-103 (251)
40 KOG4674|consensus 81.8 67 0.0014 36.6 16.1 84 95-178 800-883 (1822)
41 PF04111 APG6: Autophagy prote 81.7 19 0.0004 33.0 10.4 50 111-160 57-106 (314)
42 PF09726 Macoilin: Transmembra 81.6 35 0.00076 34.8 13.2 22 68-89 456-477 (697)
43 KOG4673|consensus 80.9 36 0.00079 35.5 12.9 77 103-179 858-937 (961)
44 PRK10884 SH3 domain-containing 80.9 26 0.00057 30.5 10.6 26 101-126 108-133 (206)
45 PF10212 TTKRSYEDQ: Predicted 80.8 40 0.00086 33.6 12.9 33 112-144 442-474 (518)
46 PRK10884 SH3 domain-containing 80.7 30 0.00065 30.1 10.9 11 120-130 134-144 (206)
47 PRK00409 recombination and DNA 80.6 61 0.0013 33.3 14.6 38 56-93 521-558 (782)
48 TIGR01069 mutS2 MutS2 family p 80.5 66 0.0014 33.1 14.8 38 55-92 515-552 (771)
49 PF04111 APG6: Autophagy prote 80.0 35 0.00077 31.2 11.6 69 111-180 71-139 (314)
50 KOG0977|consensus 79.6 72 0.0016 32.0 15.6 74 30-103 68-144 (546)
51 PF08317 Spc7: Spc7 kinetochor 79.6 49 0.0011 30.1 15.5 50 111-160 216-265 (325)
52 KOG4674|consensus 79.1 1.2E+02 0.0027 34.5 17.7 140 14-153 16-171 (1822)
53 KOG1003|consensus 78.9 46 0.001 29.5 12.6 66 96-161 129-194 (205)
54 PF04849 HAP1_N: HAP1 N-termin 78.6 58 0.0012 30.4 15.2 68 114-181 230-304 (306)
55 COG1579 Zn-ribbon protein, pos 77.8 53 0.0011 29.5 14.5 134 24-167 10-152 (239)
56 KOG0250|consensus 77.5 72 0.0016 34.5 14.2 43 121-163 390-432 (1074)
57 PF04912 Dynamitin: Dynamitin 76.7 32 0.00069 32.0 10.5 80 44-130 308-387 (388)
58 PRK09343 prefoldin subunit bet 76.5 36 0.00078 27.0 11.8 99 65-169 14-115 (121)
59 PF09727 CortBP2: Cortactin-bi 76.5 43 0.00093 29.3 10.5 53 75-127 137-189 (192)
60 COG1196 Smc Chromosome segrega 76.4 1.1E+02 0.0024 32.6 18.7 14 146-159 884-897 (1163)
61 PRK11637 AmiB activator; Provi 75.8 70 0.0015 29.9 15.0 54 105-158 199-252 (428)
62 PRK02119 hypothetical protein; 74.4 16 0.00035 26.8 6.4 52 113-164 4-55 (73)
63 PRK04406 hypothetical protein; 74.3 21 0.00045 26.5 7.0 49 115-163 8-56 (75)
64 PF13851 GAS: Growth-arrest sp 74.3 56 0.0012 28.1 16.6 28 142-169 110-137 (201)
65 PRK12704 phosphodiesterase; Pr 74.1 66 0.0014 31.6 12.3 15 150-164 166-180 (520)
66 PF07106 TBPIP: Tat binding pr 73.6 20 0.00044 29.3 7.5 54 111-164 79-134 (169)
67 TIGR03752 conj_TIGR03752 integ 73.2 46 0.001 32.8 10.9 78 43-130 58-135 (472)
68 PF05266 DUF724: Protein of un 72.9 61 0.0013 27.9 14.9 126 39-164 38-184 (190)
69 PF10146 zf-C4H2: Zinc finger- 72.9 68 0.0015 28.5 12.2 56 95-154 48-103 (230)
70 PF06156 DUF972: Protein of un 72.9 17 0.00036 28.7 6.6 56 112-167 2-57 (107)
71 PF12325 TMF_TATA_bd: TATA ele 72.8 48 0.001 26.7 13.6 103 54-167 15-117 (120)
72 COG3074 Uncharacterized protei 72.5 40 0.00086 25.6 8.5 45 120-164 27-71 (79)
73 PF13874 Nup54: Nucleoporin co 72.5 16 0.00034 29.6 6.5 61 124-184 43-103 (141)
74 PF00261 Tropomyosin: Tropomyo 72.5 64 0.0014 28.0 16.1 58 101-158 166-223 (237)
75 PF13514 AAA_27: AAA domain 71.7 1.4E+02 0.0031 31.6 18.7 149 28-179 760-929 (1111)
76 COG3074 Uncharacterized protei 71.6 42 0.00091 25.5 8.9 70 57-144 3-72 (79)
77 KOG4673|consensus 71.3 1.4E+02 0.0031 31.4 18.0 142 31-172 529-684 (961)
78 PRK03918 chromosome segregatio 71.3 1.2E+02 0.0026 30.5 22.0 15 24-38 164-178 (880)
79 PF04899 MbeD_MobD: MbeD/MobD 70.9 39 0.00083 25.0 7.7 51 100-150 17-67 (70)
80 COG4026 Uncharacterized protei 69.8 91 0.002 28.6 11.4 62 107-168 145-206 (290)
81 PRK02793 phi X174 lysis protei 69.8 27 0.00058 25.6 6.6 50 115-164 5-54 (72)
82 KOG0577|consensus 69.7 1E+02 0.0022 32.3 12.7 47 91-143 492-538 (948)
83 PRK04325 hypothetical protein; 69.7 26 0.00057 25.7 6.6 50 115-164 6-55 (74)
84 TIGR01069 mutS2 MutS2 family p 69.5 87 0.0019 32.2 12.4 66 75-140 507-572 (771)
85 PF12325 TMF_TATA_bd: TATA ele 69.5 51 0.0011 26.5 8.8 37 142-178 64-100 (120)
86 PRK04863 mukB cell division pr 69.3 2E+02 0.0042 32.3 19.8 38 28-65 253-290 (1486)
87 KOG2751|consensus 69.0 72 0.0016 31.3 11.1 53 107-159 186-238 (447)
88 COG1340 Uncharacterized archae 68.7 1E+02 0.0022 28.7 13.8 74 107-180 30-103 (294)
89 PF14662 CCDC155: Coiled-coil 68.5 83 0.0018 27.7 16.3 66 100-165 56-128 (193)
90 PF04012 PspA_IM30: PspA/IM30 68.2 73 0.0016 26.9 14.3 54 115-168 88-141 (221)
91 PF10234 Cluap1: Clusterin-ass 68.1 97 0.0021 28.3 12.2 71 83-153 135-218 (267)
92 cd00632 Prefoldin_beta Prefold 67.5 52 0.0011 25.0 9.5 94 67-165 8-103 (105)
93 PRK00295 hypothetical protein; 67.3 30 0.00064 25.1 6.4 48 117-164 4-51 (68)
94 KOG0250|consensus 67.2 1.9E+02 0.0042 31.4 15.5 57 106-162 382-438 (1074)
95 PRK15422 septal ring assembly 66.9 55 0.0012 25.0 8.9 47 120-166 27-73 (79)
96 TIGR03319 YmdA_YtgF conserved 66.6 1.4E+02 0.0029 29.4 18.0 23 154-176 119-141 (514)
97 PF05164 ZapA: Cell division p 66.4 45 0.00098 23.8 7.8 65 21-87 21-87 (89)
98 TIGR00606 rad50 rad50. This fa 66.2 2E+02 0.0043 31.2 20.0 53 117-169 798-852 (1311)
99 PF04102 SlyX: SlyX; InterPro 65.9 24 0.00051 25.4 5.6 48 117-164 3-50 (69)
100 PRK03918 chromosome segregatio 65.8 1.5E+02 0.0033 29.8 18.9 6 45-50 180-185 (880)
101 KOG3433|consensus 65.8 97 0.0021 27.4 13.0 99 67-176 83-181 (203)
102 PF14182 YgaB: YgaB-like prote 65.6 49 0.0011 25.3 7.4 54 115-170 18-75 (79)
103 PF09730 BicD: Microtubule-ass 65.3 1.8E+02 0.0038 30.3 17.1 115 66-180 367-486 (717)
104 TIGR02894 DNA_bind_RsfA transc 65.3 56 0.0012 27.9 8.6 16 50-65 82-97 (161)
105 PF12128 DUF3584: Protein of u 65.2 2E+02 0.0044 30.9 21.5 66 28-93 242-316 (1201)
106 KOG0980|consensus 63.8 2.1E+02 0.0046 30.7 15.5 33 76-108 463-495 (980)
107 PF06304 DUF1048: Protein of u 63.7 15 0.00034 28.9 4.6 41 29-69 26-66 (103)
108 PRK00736 hypothetical protein; 63.6 38 0.00083 24.5 6.4 48 117-164 4-51 (68)
109 PF15397 DUF4618: Domain of un 63.4 1.2E+02 0.0026 27.7 12.1 68 96-163 66-137 (258)
110 COG2433 Uncharacterized conser 63.3 1.4E+02 0.0031 30.6 12.2 10 146-155 481-490 (652)
111 PF07426 Dynactin_p22: Dynacti 63.3 93 0.002 26.4 13.2 66 102-168 89-162 (174)
112 KOG4360|consensus 63.3 1.8E+02 0.0038 29.5 16.9 75 112-186 234-308 (596)
113 KOG0972|consensus 62.7 1.4E+02 0.0031 28.4 13.2 126 56-181 189-325 (384)
114 PF10211 Ax_dynein_light: Axon 62.5 98 0.0021 26.3 15.8 128 21-157 33-166 (189)
115 PF15619 Lebercilin: Ciliary p 62.0 1E+02 0.0023 26.5 15.1 82 64-145 18-102 (194)
116 KOG0995|consensus 61.2 1.6E+02 0.0036 29.8 12.1 19 71-89 234-252 (581)
117 KOG0642|consensus 60.9 5.1 0.00011 40.0 1.8 51 108-158 38-88 (577)
118 PF08614 ATG16: Autophagy prot 60.6 1E+02 0.0022 25.9 10.7 65 111-175 109-180 (194)
119 COG1579 Zn-ribbon protein, pos 60.5 1.3E+02 0.0028 27.1 15.8 29 106-134 98-126 (239)
120 PRK13169 DNA replication intia 60.5 40 0.00087 26.9 6.5 53 113-165 3-55 (110)
121 PF05010 TACC: Transforming ac 60.3 1.2E+02 0.0026 26.6 17.5 65 95-166 138-202 (207)
122 PRK10361 DNA recombination pro 60.3 1.8E+02 0.0039 28.7 20.9 62 77-138 58-119 (475)
123 PF13851 GAS: Growth-arrest sp 60.0 1.1E+02 0.0024 26.2 14.2 25 145-169 99-123 (201)
124 COG2433 Uncharacterized conser 59.7 77 0.0017 32.5 9.7 48 106-153 417-464 (652)
125 PF04728 LPP: Lipoprotein leuc 59.7 44 0.00095 24.0 5.9 41 108-148 7-47 (56)
126 PF08647 BRE1: BRE1 E3 ubiquit 59.6 76 0.0016 24.1 11.8 63 82-158 30-92 (96)
127 KOG0161|consensus 59.4 3.4E+02 0.0073 31.5 18.0 104 74-177 868-995 (1930)
128 PRK12704 phosphodiesterase; Pr 59.4 1.9E+02 0.004 28.5 18.6 24 154-177 125-148 (520)
129 KOG0976|consensus 59.2 2.5E+02 0.0053 30.4 13.3 67 109-175 118-188 (1265)
130 TIGR02449 conserved hypothetic 59.1 65 0.0014 23.6 6.9 26 105-130 29-54 (65)
131 PF14739 DUF4472: Domain of un 58.5 95 0.002 24.9 10.7 84 72-176 10-100 (108)
132 PRK10803 tol-pal system protei 58.2 52 0.0011 29.3 7.5 41 115-155 58-98 (263)
133 PF05700 BCAS2: Breast carcino 57.7 1.3E+02 0.0027 26.1 11.3 77 37-131 125-202 (221)
134 PF10267 Tmemb_cc2: Predicted 57.6 1.8E+02 0.004 27.9 13.6 47 54-100 215-265 (395)
135 TIGR01005 eps_transp_fam exopo 57.5 2.1E+02 0.0046 28.6 18.5 62 107-172 341-402 (754)
136 PF09798 LCD1: DNA damage chec 57.5 49 0.0011 33.8 8.0 52 77-132 2-54 (654)
137 PF11559 ADIP: Afadin- and alp 57.2 99 0.0021 24.7 15.0 10 154-163 141-150 (151)
138 KOG0612|consensus 57.1 1.4E+02 0.0031 32.9 11.6 41 89-130 560-600 (1317)
139 PF09789 DUF2353: Uncharacteri 57.0 1.7E+02 0.0037 27.4 12.4 10 166-175 219-228 (319)
140 PF05557 MAD: Mitotic checkpoi 56.8 1.8E+02 0.0038 29.4 11.8 34 141-174 608-641 (722)
141 PRK00846 hypothetical protein; 56.4 63 0.0014 24.3 6.6 49 115-163 10-58 (77)
142 PHA02562 46 endonuclease subun 56.3 1.8E+02 0.0039 27.5 15.6 44 111-154 358-401 (562)
143 PF01166 TSC22: TSC-22/dip/bun 56.1 29 0.00062 25.2 4.5 29 107-135 17-45 (59)
144 COG1340 Uncharacterized archae 55.9 1.7E+02 0.0038 27.2 19.1 42 23-64 81-123 (294)
145 KOG0982|consensus 55.9 2.2E+02 0.0048 28.3 13.9 34 97-130 283-316 (502)
146 smart00502 BBC B-Box C-termina 55.9 79 0.0017 23.2 10.8 57 119-175 29-86 (127)
147 PRK00409 recombination and DNA 55.8 2.5E+02 0.0055 29.0 15.0 54 81-134 518-571 (782)
148 PF09744 Jnk-SapK_ap_N: JNK_SA 55.6 1.2E+02 0.0027 25.4 12.2 58 108-165 93-157 (158)
149 TIGR02338 gimC_beta prefoldin, 55.5 93 0.002 23.9 10.2 99 63-166 8-108 (110)
150 PF09730 BicD: Microtubule-ass 55.3 1.1E+02 0.0023 31.7 10.1 73 109-181 39-111 (717)
151 PF08397 IMD: IRSp53/MIM homol 55.3 1.3E+02 0.0029 25.6 12.8 85 101-185 99-206 (219)
152 PF05103 DivIVA: DivIVA protei 55.2 2.9 6.3E-05 32.2 -0.8 48 30-80 7-54 (131)
153 PF06005 DUF904: Protein of un 55.2 83 0.0018 23.2 9.2 19 51-69 11-29 (72)
154 PF08581 Tup_N: Tup N-terminal 55.1 88 0.0019 23.5 9.7 64 103-166 3-66 (79)
155 PRK04863 mukB cell division pr 55.0 3.5E+02 0.0076 30.4 17.2 12 112-123 412-423 (1486)
156 PF14818 DUF4482: Domain of un 54.6 29 0.00063 29.0 5.0 23 108-130 31-53 (141)
157 smart00787 Spc7 Spc7 kinetocho 54.5 1.8E+02 0.0039 26.9 15.1 34 120-153 227-260 (312)
158 KOG0996|consensus 53.7 3.5E+02 0.0077 30.0 15.5 24 149-172 503-526 (1293)
159 PF15070 GOLGA2L5: Putative go 53.3 2.6E+02 0.0056 28.4 18.0 93 12-113 71-180 (617)
160 PF07889 DUF1664: Protein of u 53.3 1.2E+02 0.0027 24.7 8.7 58 105-162 55-112 (126)
161 PF07888 CALCOCO1: Calcium bin 53.1 2.6E+02 0.0056 28.2 17.4 74 64-137 156-232 (546)
162 PF10828 DUF2570: Protein of u 52.8 1.1E+02 0.0023 23.8 7.8 26 141-166 62-87 (110)
163 PF12004 DUF3498: Domain of un 52.6 4.6 0.0001 39.7 0.0 15 102-116 442-456 (495)
164 PRK05431 seryl-tRNA synthetase 52.3 1.5E+02 0.0033 28.2 10.0 76 111-186 35-113 (425)
165 PHA02047 phage lambda Rz1-like 51.8 56 0.0012 26.0 5.9 52 135-186 37-88 (101)
166 KOG4552|consensus 51.6 1.9E+02 0.0041 26.3 10.0 37 53-90 45-81 (272)
167 COG1842 PspA Phage shock prote 51.3 1.7E+02 0.0038 25.8 18.2 58 112-169 86-143 (225)
168 TIGR02231 conserved hypothetic 51.2 1.9E+02 0.0041 27.8 10.6 13 71-83 70-82 (525)
169 KOG4603|consensus 51.2 1.7E+02 0.0038 25.7 14.6 94 72-176 79-182 (201)
170 PF05483 SCP-1: Synaptonemal c 51.2 3.2E+02 0.0069 28.7 17.4 60 118-177 608-667 (786)
171 PF05531 NPV_P10: Nucleopolyhe 50.7 1.1E+02 0.0023 23.2 7.2 29 108-136 8-36 (75)
172 TIGR00414 serS seryl-tRNA synt 50.6 1.7E+02 0.0037 27.8 10.0 74 113-186 39-116 (418)
173 PF10146 zf-C4H2: Zinc finger- 50.4 1.8E+02 0.004 25.8 13.3 61 109-169 44-104 (230)
174 KOG1029|consensus 50.0 3.6E+02 0.0078 29.0 14.2 25 141-165 432-456 (1118)
175 COG4942 Membrane-bound metallo 49.8 1.9E+02 0.0041 28.2 10.3 69 58-126 185-253 (420)
176 PLN02372 violaxanthin de-epoxi 49.3 2.5E+02 0.0055 27.7 11.0 41 5-45 317-360 (455)
177 PRK09039 hypothetical protein; 49.2 2.2E+02 0.0048 26.4 18.3 54 115-168 134-187 (343)
178 PF10186 Atg14: UV radiation r 49.2 1.7E+02 0.0037 25.0 16.4 45 120-164 93-137 (302)
179 PF15070 GOLGA2L5: Putative go 49.0 3E+02 0.0066 27.9 15.3 41 134-174 148-188 (617)
180 PF01486 K-box: K-box region; 48.7 1.1E+02 0.0025 22.9 8.0 68 109-176 10-83 (100)
181 PRK10636 putative ABC transpor 47.9 2.7E+02 0.0059 27.6 11.4 58 112-169 564-628 (638)
182 PF14389 Lzipper-MIP1: Leucine 47.4 68 0.0015 24.2 5.7 64 75-138 11-81 (88)
183 COG1196 Smc Chromosome segrega 47.2 3.9E+02 0.0084 28.7 21.5 45 116-160 861-905 (1163)
184 COG3206 GumC Uncharacterized p 47.2 2.5E+02 0.0054 26.4 16.5 78 95-176 326-403 (458)
185 TIGR00634 recN DNA repair prot 47.1 2.8E+02 0.0062 27.0 16.7 21 139-159 346-366 (563)
186 PF12072 DUF3552: Domain of un 47.0 1.8E+02 0.0039 24.7 12.5 19 101-119 86-104 (201)
187 PF15066 CAGE1: Cancer-associa 47.0 1.5E+02 0.0032 29.7 9.1 69 60-128 451-527 (527)
188 PRK12705 hypothetical protein; 46.9 3E+02 0.0066 27.3 17.6 9 101-109 85-93 (508)
189 KOG4687|consensus 46.7 2.6E+02 0.0057 26.5 13.4 54 106-159 148-201 (389)
190 PRK15459 flagella synthesis ch 46.6 1.7E+02 0.0036 24.2 11.6 66 114-179 47-112 (140)
191 PF04156 IncA: IncA protein; 46.1 1.6E+02 0.0036 24.0 15.0 17 115-131 127-143 (191)
192 KOG2856|consensus 46.0 2.1E+02 0.0046 28.0 9.9 101 75-176 95-221 (472)
193 PF10168 Nup88: Nuclear pore c 45.8 3.6E+02 0.0078 27.8 14.7 22 143-164 629-650 (717)
194 KOG0971|consensus 45.7 4.4E+02 0.0096 28.9 14.8 33 52-84 383-415 (1243)
195 PRK15422 septal ring assembly 45.2 1.4E+02 0.003 22.9 9.0 17 70-86 23-39 (79)
196 KOG0804|consensus 45.1 3.3E+02 0.0071 27.2 14.3 55 125-179 403-457 (493)
197 PRK10361 DNA recombination pro 45.0 3.2E+02 0.0069 27.0 19.4 74 101-174 103-186 (475)
198 PF03489 SapB_2: Saposin-like 44.9 19 0.00041 22.0 1.9 19 32-50 2-20 (35)
199 PF09787 Golgin_A5: Golgin sub 44.6 3.1E+02 0.0066 26.7 14.4 20 148-167 336-355 (511)
200 PF15254 CCDC14: Coiled-coil d 44.4 4.2E+02 0.0091 28.2 14.5 119 26-159 338-468 (861)
201 PLN02678 seryl-tRNA synthetase 44.3 2.3E+02 0.0049 27.6 10.0 75 112-186 41-118 (448)
202 PF05667 DUF812: Protein of un 44.3 3.5E+02 0.0077 27.3 14.0 13 32-44 275-287 (594)
203 KOG0241|consensus 43.7 1.1E+02 0.0023 33.7 8.0 55 74-128 366-421 (1714)
204 PRK08476 F0F1 ATP synthase sub 43.7 1.7E+02 0.0037 23.5 12.9 39 48-86 27-69 (141)
205 PF04728 LPP: Lipoprotein leuc 43.5 1.2E+02 0.0026 21.7 6.5 52 118-169 3-54 (56)
206 PF04977 DivIC: Septum formati 43.3 41 0.0009 23.4 3.7 25 111-135 24-48 (80)
207 PF06632 XRCC4: DNA double-str 43.3 2.9E+02 0.0063 26.0 13.3 74 55-128 134-211 (342)
208 PF13094 CENP-Q: CENP-Q, a CEN 43.1 1.7E+02 0.0037 23.7 7.8 43 74-116 43-85 (160)
209 PF08317 Spc7: Spc7 kinetochor 42.9 2.6E+02 0.0057 25.4 15.2 17 29-45 89-105 (325)
210 PF06419 COG6: Conserved oligo 42.8 2.6E+02 0.0056 28.0 10.3 53 91-143 18-70 (618)
211 PF05529 Bap31: B-cell recepto 42.6 1.7E+02 0.0037 24.3 7.9 15 141-155 177-191 (192)
212 KOG2077|consensus 42.3 4.2E+02 0.0091 27.6 12.6 102 68-172 325-434 (832)
213 KOG0964|consensus 42.3 5.1E+02 0.011 28.5 16.9 36 30-65 212-247 (1200)
214 KOG1899|consensus 42.1 3E+02 0.0065 28.9 10.7 34 117-150 216-249 (861)
215 PF12777 MT: Microtubule-bindi 42.0 2.8E+02 0.006 25.4 11.5 49 118-166 263-311 (344)
216 PF04102 SlyX: SlyX; InterPro 41.8 1.1E+02 0.0024 22.0 5.8 19 119-137 33-51 (69)
217 PRK10698 phage shock protein P 41.8 2.4E+02 0.0051 24.6 14.9 49 113-161 94-142 (222)
218 PF05700 BCAS2: Breast carcino 41.3 2.3E+02 0.0051 24.4 12.8 13 28-40 63-75 (221)
219 PLN02678 seryl-tRNA synthetase 41.1 2.6E+02 0.0057 27.1 9.9 81 57-138 32-112 (448)
220 TIGR03017 EpsF chain length de 40.8 2.9E+02 0.0064 25.4 17.2 25 147-171 343-367 (444)
221 PF04642 DUF601: Protein of un 40.8 56 0.0012 30.3 5.0 63 109-171 215-277 (311)
222 PF04849 HAP1_N: HAP1 N-termin 40.7 3.1E+02 0.0067 25.7 13.3 90 70-160 165-255 (306)
223 KOG0994|consensus 40.4 5.9E+02 0.013 28.8 15.4 17 21-37 1511-1527(1758)
224 PLN02320 seryl-tRNA synthetase 40.4 2E+02 0.0043 28.5 9.0 82 57-140 92-173 (502)
225 PF09755 DUF2046: Uncharacteri 39.9 3.3E+02 0.0071 25.6 14.6 21 73-93 85-105 (310)
226 KOG3096|consensus 39.8 2.8E+02 0.0061 24.9 10.6 81 33-134 116-200 (225)
227 KOG4657|consensus 39.7 3E+02 0.0064 25.1 18.3 101 24-135 17-117 (246)
228 KOG3859|consensus 39.6 2.2E+02 0.0048 27.3 8.8 57 106-171 321-377 (406)
229 PF01486 K-box: K-box region; 39.5 1.6E+02 0.0035 22.1 6.7 31 132-162 68-98 (100)
230 COG4817 DNA-binding ferritin-l 39.5 2.1E+02 0.0045 23.2 7.8 39 30-69 32-70 (111)
231 PF07200 Mod_r: Modifier of ru 39.1 2E+02 0.0042 22.8 8.6 20 113-132 29-48 (150)
232 PRK06798 fliD flagellar cappin 39.0 3.6E+02 0.0078 25.9 11.6 104 18-133 330-433 (440)
233 PRK06975 bifunctional uroporph 38.7 2.2E+02 0.0047 28.8 9.2 17 163-179 416-432 (656)
234 PF12718 Tropomyosin_1: Tropom 38.5 2.2E+02 0.0047 23.2 14.1 57 115-171 77-140 (143)
235 PRK13729 conjugal transfer pil 38.1 1.2E+02 0.0026 30.0 7.1 24 111-134 97-120 (475)
236 KOG4809|consensus 37.4 1.5E+02 0.0032 30.3 7.7 36 106-141 333-368 (654)
237 PRK10265 chaperone-modulator p 37.3 33 0.00071 26.3 2.6 29 112-140 72-100 (101)
238 PLN02320 seryl-tRNA synthetase 36.9 3.7E+02 0.0079 26.8 10.2 75 112-186 101-177 (502)
239 KOG2129|consensus 36.8 4.4E+02 0.0096 26.3 15.3 32 103-134 189-224 (552)
240 KOG4603|consensus 36.7 2.2E+02 0.0047 25.1 7.7 57 108-164 83-141 (201)
241 PF10458 Val_tRNA-synt_C: Valy 36.7 1.5E+02 0.0033 20.8 7.8 56 109-164 2-64 (66)
242 KOG0709|consensus 36.4 96 0.0021 30.7 6.1 47 95-141 267-316 (472)
243 KOG0946|consensus 36.2 4.3E+02 0.0093 28.4 10.9 66 108-173 689-757 (970)
244 PRK05431 seryl-tRNA synthetase 35.6 3.3E+02 0.0071 25.9 9.5 75 63-138 33-107 (425)
245 PF08172 CASP_C: CASP C termin 35.2 1.3E+02 0.0029 26.8 6.5 24 111-134 107-130 (248)
246 PF10226 DUF2216: Uncharacteri 35.1 3.2E+02 0.0069 24.2 16.7 106 74-179 11-141 (195)
247 PF07111 HCR: Alpha helical co 35.0 5.6E+02 0.012 26.9 15.1 106 69-174 475-584 (739)
248 COG0419 SbcC ATPase involved i 34.9 5.4E+02 0.012 26.7 20.6 26 21-46 170-195 (908)
249 cd07605 I-BAR_IMD Inverse (I)- 34.9 3.2E+02 0.0069 24.1 12.6 98 82-182 93-214 (223)
250 PF13166 AAA_13: AAA domain 34.9 4.5E+02 0.0098 25.8 13.3 56 106-161 398-453 (712)
251 PF14817 HAUS5: HAUS augmin-li 34.2 1.5E+02 0.0033 30.2 7.3 21 33-53 26-46 (632)
252 COG3879 Uncharacterized protei 34.1 1.4E+02 0.003 27.2 6.4 30 109-138 55-84 (247)
253 KOG0810|consensus 33.9 3.8E+02 0.0083 24.7 13.1 104 59-164 34-148 (297)
254 KOG4005|consensus 33.8 3.9E+02 0.0084 24.8 9.6 34 101-138 91-124 (292)
255 PF00769 ERM: Ezrin/radixin/mo 33.8 3.4E+02 0.0073 24.0 14.9 62 102-163 52-113 (246)
256 PF10168 Nup88: Nuclear pore c 33.8 5.5E+02 0.012 26.5 19.4 34 102-135 630-663 (717)
257 TIGR03185 DNA_S_dndD DNA sulfu 33.5 4.9E+02 0.011 25.9 17.5 43 96-138 240-289 (650)
258 PF09766 FimP: Fms-interacting 33.0 2.8E+02 0.006 25.9 8.4 28 80-107 88-115 (355)
259 PF07820 TraC: TraC-like prote 32.7 85 0.0019 24.6 4.2 52 114-165 5-62 (92)
260 PRK04325 hypothetical protein; 32.5 2E+02 0.0044 21.1 6.6 41 121-161 5-45 (74)
261 PF05622 HOOK: HOOK protein; 31.8 15 0.00033 36.7 0.0 12 73-84 275-286 (713)
262 TIGR02209 ftsL_broad cell divi 31.8 1.1E+02 0.0024 21.9 4.5 19 116-134 36-54 (85)
263 PF06548 Kinesin-related: Kine 31.8 5.4E+02 0.012 25.7 12.2 28 101-128 285-312 (488)
264 PF11101 DUF2884: Protein of u 31.7 3.5E+02 0.0076 23.6 12.4 34 24-57 127-160 (229)
265 PRK10803 tol-pal system protei 31.7 2.9E+02 0.0063 24.5 8.0 51 85-135 42-92 (263)
266 COG1382 GimC Prefoldin, chaper 31.6 2.9E+02 0.0062 22.5 12.5 34 121-154 73-106 (119)
267 PF13166 AAA_13: AAA domain 31.5 5.1E+02 0.011 25.5 15.9 31 139-169 438-471 (712)
268 PF12808 Mto2_bdg: Micro-tubul 31.5 1.5E+02 0.0033 20.8 5.0 33 101-133 5-44 (52)
269 PF05384 DegS: Sensor protein 31.5 3.2E+02 0.0069 23.0 16.5 55 21-80 16-70 (159)
270 KOG1899|consensus 31.4 6.4E+02 0.014 26.6 11.3 91 65-166 104-194 (861)
271 PRK10869 recombination and rep 31.2 5.2E+02 0.011 25.5 16.8 146 20-175 220-377 (553)
272 PF10805 DUF2730: Protein of u 31.2 2.5E+02 0.0054 21.7 9.1 49 99-147 48-101 (106)
273 PF13935 Ead_Ea22: Ead/Ea22-li 31.1 2.8E+02 0.0061 22.3 9.1 31 55-85 71-103 (139)
274 KOG3433|consensus 31.1 2.7E+02 0.0059 24.7 7.5 34 34-67 18-55 (203)
275 PRK09841 cryptic autophosphory 31.0 5.8E+02 0.012 25.9 17.1 20 151-170 375-394 (726)
276 PF09755 DUF2046: Uncharacteri 30.9 4.6E+02 0.0099 24.7 20.1 50 104-153 99-149 (310)
277 KOG0976|consensus 30.9 7.3E+02 0.016 27.1 16.2 58 88-145 300-357 (1265)
278 TIGR00414 serS seryl-tRNA synt 30.9 4.5E+02 0.0098 25.0 9.6 80 57-139 29-111 (418)
279 PF06160 EzrA: Septation ring 30.9 5.3E+02 0.012 25.4 17.4 34 69-102 275-308 (560)
280 PRK14127 cell division protein 30.7 66 0.0014 25.6 3.4 48 30-80 12-59 (109)
281 PRK00888 ftsB cell division pr 30.4 1.4E+02 0.0031 23.2 5.2 15 146-160 48-62 (105)
282 PF10211 Ax_dynein_light: Axon 30.3 3.4E+02 0.0074 23.0 13.9 18 28-45 61-79 (189)
283 PF15456 Uds1: Up-regulated Du 30.2 3E+02 0.0064 22.3 9.0 31 144-174 86-116 (124)
284 TIGR03007 pepcterm_ChnLen poly 30.0 4.7E+02 0.01 24.6 13.4 55 112-166 325-382 (498)
285 PRK08032 fliD flagellar cappin 29.7 5.1E+02 0.011 24.9 12.2 99 24-132 360-459 (462)
286 KOG1962|consensus 29.7 4.1E+02 0.0088 23.7 9.1 56 107-162 154-209 (216)
287 KOG4571|consensus 29.7 2.9E+02 0.0063 25.8 7.8 14 23-36 164-177 (294)
288 PF02841 GBP_C: Guanylate-bind 29.6 4.1E+02 0.0089 23.7 13.2 15 144-158 282-296 (297)
289 PF10224 DUF2205: Predicted co 29.3 2.5E+02 0.0055 21.2 6.3 19 72-90 23-41 (80)
290 PF10174 Cast: RIM-binding pro 29.1 7E+02 0.015 26.2 14.2 123 30-163 85-218 (775)
291 KOG0994|consensus 29.0 9.1E+02 0.02 27.5 17.8 50 42-91 1557-1606(1758)
292 PF10498 IFT57: Intra-flagella 28.9 5E+02 0.011 24.5 12.6 41 142-182 276-319 (359)
293 PRK01156 chromosome segregatio 28.8 6.5E+02 0.014 25.8 19.5 18 118-135 305-322 (895)
294 PF11172 DUF2959: Protein of u 28.7 4.2E+02 0.009 23.5 11.2 59 52-116 43-108 (201)
295 KOG4661|consensus 28.6 2.5E+02 0.0054 29.2 7.7 36 71-108 650-685 (940)
296 KOG4797|consensus 28.6 92 0.002 25.5 3.9 27 109-135 72-98 (123)
297 smart00787 Spc7 Spc7 kinetocho 28.3 4.8E+02 0.01 24.1 16.2 23 138-160 238-260 (312)
298 KOG0933|consensus 28.3 8.5E+02 0.018 26.9 20.2 57 116-172 317-376 (1174)
299 PRK04778 septation ring format 28.3 5.8E+02 0.013 25.1 19.3 18 25-42 324-341 (569)
300 PF03114 BAR: BAR domain; Int 28.1 3.1E+02 0.0067 21.8 9.4 25 99-123 167-191 (229)
301 PF15272 BBP1_C: Spindle pole 28.1 2.4E+02 0.0053 24.8 6.7 49 114-162 5-53 (196)
302 KOG0978|consensus 28.0 7.1E+02 0.015 26.0 18.0 58 103-160 495-552 (698)
303 PRK15396 murein lipoprotein; P 27.9 1.9E+02 0.0041 21.8 5.3 34 115-148 36-69 (78)
304 PF15035 Rootletin: Ciliary ro 27.7 3.9E+02 0.0084 22.8 10.0 77 58-134 88-164 (182)
305 smart00503 SynN Syntaxin N-ter 27.4 2.5E+02 0.0055 20.6 13.0 30 100-129 46-75 (117)
306 KOG3758|consensus 27.4 6.9E+02 0.015 25.9 10.5 50 91-140 51-100 (655)
307 PRK13169 DNA replication intia 27.4 2.3E+02 0.0051 22.6 6.0 38 135-172 4-41 (110)
308 PF02403 Seryl_tRNA_N: Seryl-t 27.4 2.7E+02 0.0058 20.8 9.0 52 114-165 39-93 (108)
309 PF00804 Syntaxin: Syntaxin; 27.0 2.3E+02 0.005 20.0 8.8 58 107-168 3-60 (103)
310 PRK10929 putative mechanosensi 26.7 8.8E+02 0.019 26.6 12.5 45 119-163 259-303 (1109)
311 PF07061 Swi5: Swi5; InterPro 26.7 2.8E+02 0.0061 20.9 7.9 51 108-161 4-54 (83)
312 PF02403 Seryl_tRNA_N: Seryl-t 26.6 2.8E+02 0.006 20.8 7.8 22 63-84 34-55 (108)
313 KOG1003|consensus 26.4 4.7E+02 0.01 23.3 11.1 66 102-167 128-193 (205)
314 TIGR01039 atpD ATP synthase, F 26.1 1.9E+02 0.004 28.5 6.2 66 17-82 349-430 (461)
315 KOG0239|consensus 26.0 7.3E+02 0.016 25.5 16.4 34 101-134 231-264 (670)
316 PF10965 DUF2767: Protein of u 25.8 99 0.0021 23.0 3.4 37 21-58 32-68 (69)
317 PF05600 DUF773: Protein of un 25.8 6.5E+02 0.014 24.8 11.8 32 29-60 385-416 (507)
318 TIGR02894 DNA_bind_RsfA transc 25.4 4.3E+02 0.0094 22.6 10.4 27 149-179 128-154 (161)
319 PRK06975 bifunctional uroporph 25.4 6.4E+02 0.014 25.5 10.0 24 143-166 389-412 (656)
320 COG5019 CDC3 Septin family pro 24.8 5.1E+02 0.011 25.0 8.7 39 96-134 327-365 (373)
321 PF12072 DUF3552: Domain of un 24.7 4.3E+02 0.0094 22.4 18.2 73 105-177 69-144 (201)
322 PRK15178 Vi polysaccharide exp 24.6 6.7E+02 0.014 24.5 14.3 35 19-53 213-247 (434)
323 PF04799 Fzo_mitofusin: fzo-li 24.6 3.5E+02 0.0077 23.3 7.0 52 96-147 112-166 (171)
324 TIGR02680 conserved hypothetic 24.2 9.9E+02 0.022 26.4 19.7 150 44-193 854-1003(1353)
325 PRK09280 F0F1 ATP synthase sub 24.1 1.8E+02 0.0039 28.5 5.7 53 16-68 349-407 (463)
326 PTZ00454 26S protease regulato 23.7 2.1E+02 0.0046 27.0 6.0 12 147-158 51-62 (398)
327 PF12126 DUF3583: Protein of u 23.7 6.3E+02 0.014 23.9 9.8 31 100-130 57-87 (324)
328 PF06156 DUF972: Protein of un 23.6 2.9E+02 0.0063 21.7 5.9 40 135-174 4-43 (107)
329 KOG0964|consensus 23.6 1E+03 0.022 26.3 16.3 34 51-84 258-291 (1200)
330 PF05384 DegS: Sensor protein 23.6 4.5E+02 0.0097 22.2 14.0 54 56-109 18-71 (159)
331 PF10224 DUF2205: Predicted co 23.4 3.3E+02 0.0072 20.6 8.0 38 145-183 36-73 (80)
332 COG4467 Regulator of replicati 23.3 2.7E+02 0.0059 22.6 5.7 27 139-165 8-34 (114)
333 PF12709 Kinetocho_Slk19: Cent 23.2 3.6E+02 0.0078 20.9 9.4 56 71-135 14-73 (87)
334 PF05565 Sipho_Gp157: Siphovir 23.2 4.3E+02 0.0093 21.8 8.9 60 115-178 37-96 (162)
335 PF07200 Mod_r: Modifier of ru 23.1 3.8E+02 0.0083 21.2 15.1 31 50-80 26-63 (150)
336 PRK13848 conjugal transfer pro 23.0 1.4E+02 0.003 23.7 3.9 47 115-164 7-62 (98)
337 PF00306 ATP-synt_ab_C: ATP sy 22.9 1.1E+02 0.0024 23.4 3.3 42 30-71 13-54 (113)
338 PF10482 CtIP_N: Tumour-suppre 22.8 4.3E+02 0.0094 21.7 8.8 70 59-132 36-117 (120)
339 KOG0570|consensus 22.8 5.7E+02 0.012 23.0 9.1 86 49-134 83-174 (223)
340 PF15254 CCDC14: Coiled-coil d 22.7 9.6E+02 0.021 25.7 13.6 30 57-86 447-476 (861)
341 PF12329 TMF_DNA_bd: TATA elem 22.5 3.2E+02 0.0068 20.0 9.5 16 146-161 54-69 (74)
342 PRK14127 cell division protein 22.3 2.4E+02 0.0052 22.5 5.2 33 110-142 36-68 (109)
343 PF15290 Syntaphilin: Golgi-lo 22.2 6E+02 0.013 23.9 8.4 50 65-123 82-136 (305)
344 KOG2391|consensus 22.2 7.2E+02 0.016 24.0 9.1 39 99-137 248-286 (365)
345 PF02344 Myc-LZ: Myc leucine z 22.1 2E+02 0.0043 18.6 3.7 12 73-84 9-20 (32)
346 PF04568 IATP: Mitochondrial A 21.8 4E+02 0.0087 20.9 6.7 8 117-124 89-96 (100)
347 PF14931 IFT20: Intraflagellar 21.6 4.3E+02 0.0094 21.2 13.7 54 8-66 3-56 (120)
348 KOG3990|consensus 21.4 3.9E+02 0.0084 25.0 6.9 71 115-186 222-300 (305)
349 PF15175 SPATA24: Spermatogene 21.3 5.2E+02 0.011 22.1 8.7 56 73-142 32-87 (153)
350 PF05622 HOOK: HOOK protein; 21.2 79 0.0017 31.8 2.8 70 109-179 265-337 (713)
351 PF05121 GvpK: Gas vesicle pro 21.1 2E+02 0.0043 22.4 4.3 25 42-66 7-31 (88)
352 KOG0979|consensus 20.7 1.2E+03 0.025 25.8 16.7 15 69-83 178-192 (1072)
353 PRK00736 hypothetical protein; 20.6 3.3E+02 0.0072 19.6 6.2 6 129-134 9-14 (68)
354 PF05701 WEMBL: Weak chloropla 20.6 8.1E+02 0.017 24.0 17.3 129 32-160 116-263 (522)
355 COG5185 HEC1 Protein involved 20.6 9.1E+02 0.02 24.6 13.2 24 67-90 266-289 (622)
356 PRK13923 putative spore coat p 20.2 5.6E+02 0.012 22.0 7.5 27 105-131 105-131 (170)
357 KOG2228|consensus 20.1 1.4E+02 0.0031 28.9 4.0 36 28-63 321-356 (408)
No 1
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=100.00 E-value=3.7e-53 Score=350.01 Aligned_cols=157 Identities=58% Similarity=0.782 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKL 102 (205)
Q Consensus 23 Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel 102 (205)
||+||++||+|||+||++||+|+|+||||+||+|||+||+++++|+++++++++|++||++|+++|+++|++|+++++++
T Consensus 1 Vy~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l 80 (158)
T PF09744_consen 1 VYDLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEEL 80 (158)
T ss_pred ChHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
.++||+|++++++|.++|++|+++||+|+++++|++||++|+++++.+||++|+.+|+|||++|++|++|++|+|..
T Consensus 81 ~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 81 LELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>KOG2077|consensus
Probab=100.00 E-value=8.8e-49 Score=373.94 Aligned_cols=168 Identities=59% Similarity=0.810 Sum_probs=166.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2152 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAA 98 (205)
Q Consensus 19 mse~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~ 98 (205)
||++|+.||++||+|||+||..||+++|+.|||+||+|||+||+++++|++|.+||++||+|||||++||||||.+|+++
T Consensus 1 MSerVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~ 80 (832)
T KOG2077|consen 1 MSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQL 80 (832)
T ss_pred CchhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 99 DQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178 (205)
Q Consensus 99 Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~ 178 (205)
+++++++||+++++.++|..+++.++...|+|++|+||++||++||+||+.++|.||+.||+|||+|+|||++|++|+|+
T Consensus 81 eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem~rthv~h~ersk~ 160 (832)
T KOG2077|consen 81 EQKFIEGEDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRTHVSHKERSKV 160 (832)
T ss_pred HhhhcchHHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCC
Q psy2152 179 MMGSGSSD 186 (205)
Q Consensus 179 ~~~~~~~~ 186 (205)
+++++.++
T Consensus 161 ~qgg~k~~ 168 (832)
T KOG2077|consen 161 SQGGSKAT 168 (832)
T ss_pred hhcCcccc
Confidence 99998877
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.49 E-value=1.6 Score=38.40 Aligned_cols=140 Identities=17% Similarity=0.239 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Ee 100 (205)
.+...+-..|..+|+.+++.+-.++-.-.=+++-.+-...............++..++.....|-.++..=+......+.
T Consensus 165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~ 244 (312)
T PF00038_consen 165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER 244 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence 34445556678899999999999988888888777666666666666667777777888877776666665666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY---TELLKTHMEYIE 174 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~---~elir~~~e~~e 174 (205)
.+..++..+..+.+.++..|..++.+...+...+ ....++|+.|-+.- -.-|-+|..+++
T Consensus 245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~--------------~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 245 QLRELEQRLDEEREEYQAEIAELEEELAELREEM--------------ARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8888888888888888888888877766554333 33444555554422 233666666554
No 4
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.48 E-value=2.1 Score=40.63 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=64.8
Q ss_pred HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
-=|.|-..+..-+++..|.+.|+-.|++|+.|+=+-+.. =-.-.++.+.|..-+..+.++|..|++++.
T Consensus 83 ~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v-----------f~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 83 KDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV-----------FMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 335566667777889999999999999999888764332 122344555666677777777777777777
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 136 NASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 136 n~~dq~~rleErE~elkkE~~~Lh 159 (205)
.+..+..-.+|+-+.|.+|+..--
T Consensus 152 ~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHHHHH
Confidence 777777666777777766665433
No 5
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.30 E-value=4.1 Score=35.44 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
....--|.|..++++|...+..|..+...|+...+....++...+.+-.+|+.....+.....++.-
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p 105 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777777777777777766666666666666666666655555554444433
No 6
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.28 E-value=5 Score=35.33 Aligned_cols=75 Identities=27% Similarity=0.431 Sum_probs=59.2
Q ss_pred HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy2152 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDK---KELNSKIESLESIVRML 130 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~---keL~~~v~~Le~~~r~L 130 (205)
+=..++.+...+.....++.-++.+.+.+-.+|+.+...++..+.++..+-...+.++ -+|..++..|+.+..-+
T Consensus 59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 3356788888899999999999999999999999999999999887776665544443 45777888888765544
No 7
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.15 E-value=5.2 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLE 145 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rle 145 (205)
.+..+...++..++.+..+.+...|.+.++.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554443
No 8
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=92.07 E-value=12 Score=37.33 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=74.2
Q ss_pred HhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q psy2152 46 VKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-----------------KAADQKLFQIEDA 108 (205)
Q Consensus 46 V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-----------------k~~Eeel~~~ED~ 108 (205)
+..|.--+..+-..++.+.+.......+++..+..++.|-.+|..-+..- ....+++..+..+
T Consensus 337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~q 416 (594)
T PF05667_consen 337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQ 416 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666555433333332221 2334588889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
|+.=+..|...+..|..........++...+.+..+.++..++..+...-.+.|..|...
T Consensus 417 We~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 417 WEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888866554444444444555555555555554444444444444443
No 9
>PRK11637 AmiB activator; Provisional
Probab=91.90 E-value=9.7 Score=35.60 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
...+.+.+..++..++...+.++..+......+..++.+..++++++..+.+.+...++.+
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777777777777777888888777777777777764
No 10
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.56 E-value=2.8 Score=33.45 Aligned_cols=56 Identities=21% Similarity=0.118 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 49 LMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQ 104 (205)
Q Consensus 49 LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~ 104 (205)
|.-.+.++.+..+.+...-.....++.....--...-..||+|=.+....=+.|-.
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~ 63 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ 63 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444454444444444444444444444455666665544333334433
No 11
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=91.54 E-value=8 Score=32.97 Aligned_cols=65 Identities=18% Similarity=0.341 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDH-VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq-~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
.++..+...++.|+.++..|...+..+.+. ..+++....+. ..+..--+|+|+=|-.-..|+-+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~-~~~~~~anrwTDNI~~l~~~~~~k 168 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI-KIAKEAANRWTDNIFSLKSYLKKK 168 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHh
Confidence 677778888888888888887777644432 12233222222 233344568888888878887763
No 12
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.95 E-value=5.2 Score=33.70 Aligned_cols=117 Identities=22% Similarity=0.290 Sum_probs=31.8
Q ss_pred hHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 44 d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~L 123 (205)
..+..+=++++..-+.|..++..+......|-.+...++.+-..+.... ..+. .+..+...|..++..|
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~-------~~l~----~l~~~~~~L~~~~~~l 135 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKE-------RRLA----ELEAELAQLEEKIKDL 135 (194)
T ss_dssp -----------------------------------------------HH-------HHHH----HHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHH-------HHHH----HHHHHHHHHHHHHHHH
Confidence 4455666777777788888777776666666555555333211111100 0111 1122223333333333
Q ss_pred HHHHHHHHhhhcchhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 124 ESIVRMLELKSKNASD-------HVYRLEEKEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 124 e~~~r~Le~k~kn~~d-------q~~rleErE~elkkE~~~Lh~r~~elir~~~e 171 (205)
..+.+..........| +..-++++-..+++|...|.+|+......-.+
T Consensus 136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe 190 (194)
T PF08614_consen 136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE 190 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222222 34557777778888888888777665544433
No 13
>KOG1962|consensus
Probab=90.38 E-value=3.6 Score=36.45 Aligned_cols=57 Identities=30% Similarity=0.498 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+..+...+.+....|+++.+....+.+....++..+.-|-.++.+||.+|-+.|.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444555666667777777777777777777788888888888999999998888765
No 14
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=89.51 E-value=2.2 Score=34.64 Aligned_cols=51 Identities=27% Similarity=0.264 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
-.|+-|+.+|+++|+.||.+.|.++..-+ |.+-|...=|..||.|-...|.
T Consensus 21 ~~WeiERaEmkarIa~LEGE~r~~e~l~~---dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 21 NQWEIERAEMKARIAFLEGERRGQENLKK---DLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999999998876554 4455655556666666655543
No 15
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.50 E-value=9.3 Score=30.42 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=46.1
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
.+..+-.........+..++.|.+.. -..=+....+++.++..=-+. -.....+...+..++.....|...+....
T Consensus 11 e~~~~~~~~~~~~~~~~~~~~dl~~q---~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 11 ELQRLKEQEEDAEEQLQSLREDLESQ---AKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554322 111111223344333322222 33344444445555555555444443333
Q ss_pred hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 139 DHV----YRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 139 dq~----~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
..+ ...++++..|.++...+..|+.+|-..
T Consensus 87 ~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 87 AELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 234556666666666666655544433
No 16
>KOG1103|consensus
Probab=88.91 E-value=24 Score=34.30 Aligned_cols=60 Identities=28% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 75 ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 75 e~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
-.|..+++||-.|+|-|+...|++|..---+|-+++.|++...+-+--|--++++..+|+
T Consensus 142 ~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~Ka 201 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKA 201 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998888899999888877766666655666554443
No 17
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.90 E-value=18 Score=33.17 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHhhChhH----------HhhHHHHHHHHHHhhHHH----------------hhhhhhhhHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMITKYDEDV----------VKDLMPLVVNVLESLDLA----------------FTENQEHEVELELL 77 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~yG~d~----------V~~LmP~VV~vLE~Le~~----------------~~~n~~~~~Ele~L 77 (205)
|..=.++..=++.||++||.=+ ...+|--++.|...|.+. +.+-...++++.=|
T Consensus 92 Y~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WL 171 (269)
T PF05278_consen 92 YQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWL 171 (269)
T ss_pred EEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHH
Confidence 5566677777899999999533 345666666666666442 22222334444555
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHH
Q psy2152 78 REDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSI 157 (205)
Q Consensus 78 red~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~ 157 (205)
|...+.++.- ++..++++ ....--+.++.........++.++++.++.+..++...+++.-.-.|-++|+-+-.+
T Consensus 172 R~~L~Ei~Ea----~e~~~~~~-~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~ 246 (269)
T PF05278_consen 172 RSKLEEILEA----KEIYDQHE-TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR 246 (269)
T ss_pred HHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443211 11111111 111222333444444445555556666666666666655555444454444444444
Q ss_pred HHHH
Q psy2152 158 LHER 161 (205)
Q Consensus 158 Lh~r 161 (205)
++.+
T Consensus 247 l~k~ 250 (269)
T PF05278_consen 247 LSKT 250 (269)
T ss_pred HHHH
Confidence 4443
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=88.43 E-value=39 Score=36.16 Aligned_cols=75 Identities=19% Similarity=0.307 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH----VYRLEEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq----~~rleErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
.+....+.+.-+.|..++..+...+..++.....++.+-..|.+. +...-+++.+|+.++..+..+++-|-..|-
T Consensus 298 ~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~ 376 (1201)
T PF12128_consen 298 EKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQ 376 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555566666666666666666666666666666543 222334444455544444444444444443
No 19
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.23 E-value=21 Score=33.55 Aligned_cols=56 Identities=21% Similarity=0.379 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEK----------EQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleEr----------E~elkkE~~~Lh~r~~elir~~~e 171 (205)
|...+..++.+...+..+..+..+++..++.+ -..|++++....+.|..++..+.+
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee 380 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES 380 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555554444333 335555555555555555555433
No 20
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.18 E-value=36 Score=36.57 Aligned_cols=130 Identities=15% Similarity=0.263 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH-------H------H
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL-------R------K 96 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l-------R------k 96 (205)
+..+++..++.-|+..+..+-..+-.+-..++.+.++-.....++..++.+... ...++.. + +
T Consensus 956 ~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~----~~~~kr~l~dnL~~~~~~~~l~ 1031 (1311)
T TIGR00606 956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT----QKIQERWLQDNLTLRKRENELK 1031 (1311)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566666666665555444444455555555555555555554222 2222211 1 2
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 97 AADQKLFQIED--------ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 97 ~~Eeel~~~ED--------~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
..+.++..++. .+..+.+++..++..|......+....+.+.+++..++..-.+ .+|....++|.+.
T Consensus 1032 el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka 1106 (1311)
T TIGR00606 1032 EVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREM 1106 (1311)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHH
Confidence 22334444443 3445556666666666555555555555555555554433322 3555555555543
No 21
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=87.67 E-value=29 Score=33.93 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=35.6
Q ss_pred HHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED 107 (205)
Q Consensus 53 VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED 107 (205)
+-.++..|..+- -......+..+.+..++|.+.+++|...++..++....+.+
T Consensus 265 i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~ 317 (569)
T PRK04778 265 IDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD 317 (569)
T ss_pred HHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444444442 33445667889999999999999999998777764444443
No 22
>PRK00106 hypothetical protein; Provisional
Probab=87.39 E-value=32 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 154 EYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 154 E~~~Lh~r~~elir~~~e~~er~k 177 (205)
++..+...+.+++.....-+++..
T Consensus 140 eLee~~~~~~~~~~~~~~~Le~~a 163 (535)
T PRK00106 140 HIDEREEQVEKLEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555555543
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.99 E-value=10 Score=27.98 Aligned_cols=62 Identities=24% Similarity=0.310 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
+.++.-...+...|+.|+.++..|..+-....+.-.-|.+.-..|+.+.+....|...++..
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555566667777777777766666666777777777788888888888887777653
No 24
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=86.59 E-value=16 Score=29.84 Aligned_cols=101 Identities=23% Similarity=0.390 Sum_probs=48.7
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRK---AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk---~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
+.++...+...+.+++.+......+-..++.--.... ....++..+|+.++.--+ ++....+..+....++-.
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~----~L~e~~ekl~e~d~~ae~ 112 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK----KLKETTEKLREADVKAEH 112 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHH
Confidence 3344444444444454444443333322222111111 223344444444433322 233333333444455555
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 137 ASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 137 ~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
+.-++..|+.+-.+|-+.|..|..+|.+
T Consensus 113 ~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 113 FERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 5555666777777788888877777765
No 25
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=86.34 E-value=26 Score=32.05 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=63.4
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASD 139 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~d 139 (205)
++.-...+.....+-..|++....|+.||+. | |+.+..+=..-+-+.+=+.+++++..........++..+.+
T Consensus 123 ~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~----r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~ 195 (309)
T PF09728_consen 123 MEEQSERNIKLREENEELREKLKSLIEQYEL----R---EEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKE 195 (309)
T ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344445555666778899999999999993 2 22333333344445555666666666666666667766666
Q ss_pred -------hhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 140 -------HVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 140 -------q~~rleErE~elkkE~~~Lh~r~~ 163 (205)
++..+.++|.+|+..++--.++|.
T Consensus 196 ~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~ 226 (309)
T PF09728_consen 196 ILLEEAAQVQTLKETEKELREQLNLYSEKFE 226 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986655554443
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.26 E-value=17 Score=29.75 Aligned_cols=91 Identities=23% Similarity=0.283 Sum_probs=52.3
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh-hHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYR-LEEKEQ 149 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~r-leErE~ 149 (205)
..++..+..+..+|-.++..-+..-+..+.++-.+.-..- ..+|...|.+|+.++..|+.++..+...... ..+...
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~ 148 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE 148 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 4467777777777766666666666666666655544332 2346667777777777776666554432111 234444
Q ss_pred HHHHHHHHHHHHHH
Q psy2152 150 ELKKEYSILHERYT 163 (205)
Q Consensus 150 elkkE~~~Lh~r~~ 163 (205)
.+.++|...+..+.
T Consensus 149 ~~~~~~~~~~k~w~ 162 (169)
T PF07106_consen 149 KLEKEYKKWRKEWK 162 (169)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 27
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=85.52 E-value=7.5 Score=38.11 Aligned_cols=65 Identities=32% Similarity=0.384 Sum_probs=33.0
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESI 126 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~ 126 (205)
.|-.++.+..+...++..|..+|+.|..+-++ +|++...-=.++......+++++..+.++|+.+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~---L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~ 124 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENER---LQKREQSIDQQIQQAVQSETQELTKEIEQLKSE 124 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45555666666666666676666666554443 233322222334444444444444444444443
No 28
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=85.36 E-value=27 Score=31.22 Aligned_cols=97 Identities=20% Similarity=0.300 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL----RKAADQKLFQI 105 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l----Rk~~Eeel~~~ 105 (205)
+-++|.++...|-..+- +-|.+-+.|..+..........+ |..|. -++..+++... ...++.+...+
T Consensus 153 ~~~~~~~~~~~Y~~~p~-----Kg~ka~evL~~fl~~~~~~~~~i--lq~d~--~L~~~ek~~~~~~~k~e~~e~e~~~l 223 (297)
T PF02841_consen 153 FLKELDELEKEYEQEPG-----KGVKAEEVLQEFLQSKESMENSI--LQADQ--QLTEKEKEIEEEQAKAEAAEKEKEKL 223 (297)
T ss_dssp HHHHHHHHHHHHHHSS--------TTHHHHHHHHHHHCHHHHHHH--HHH-T--TS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCC-----CCccHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888855522 34445555555544433222222 22221 13444444332 23444556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
++......+.+..+..++++..++|..+..
T Consensus 224 ~e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 224 EEKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666677777777777666665543
No 29
>KOG0980|consensus
Probab=84.69 E-value=33 Score=36.41 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-hhhcchh
Q psy2152 67 NQEHEVELELLREDNEQLVTQYEREKQL-R---KAADQKLFQIEDALEDDKKELNSKIESLE---SIVRMLE-LKSKNAS 138 (205)
Q Consensus 67 n~~~~~Ele~Lred~e~Lv~q~ErEK~l-R---k~~Eeel~~~ED~~~~E~keL~~~v~~Le---~~~r~Le-~k~kn~~ 138 (205)
.+....-++.+..+.+++-.++++.+.. | -+++..+..+|-.+.+-.+..+...+..| .+.-+|. .+.....
T Consensus 328 kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ek 407 (980)
T KOG0980|consen 328 KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEK 407 (980)
T ss_pred CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777766655 2 44555666666555555554444433333 2222211 0111111
Q ss_pred hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy2152 139 DH--VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMG 181 (205)
Q Consensus 139 dq--~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~ 181 (205)
.+ +.-.+.+-..++..|+++...|+++...|.+++++.+-.+.
T Consensus 408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k 452 (980)
T KOG0980|consen 408 AQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK 452 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 33344444555666666666777776667666666654433
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=84.33 E-value=49 Score=33.39 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy2152 151 LKKEYSILHERYTE 164 (205)
Q Consensus 151 lkkE~~~Lh~r~~e 164 (205)
++.++..+..+..+
T Consensus 625 ~~~~l~~~r~~i~~ 638 (880)
T PRK02224 625 RRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444333
No 31
>KOG0161|consensus
Probab=84.25 E-value=48 Score=37.87 Aligned_cols=65 Identities=31% Similarity=0.308 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
++...+..++.+...++.+++++.+.+..++++.+.|.|+-..|.+++.++.-.....=++.+.+
T Consensus 947 ~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen 947 ELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666777778888888888888888888888887777777777766665555555443
No 32
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.95 E-value=27 Score=34.74 Aligned_cols=102 Identities=17% Similarity=0.283 Sum_probs=62.2
Q ss_pred HHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 35 EKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKK 114 (205)
Q Consensus 35 E~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~k 114 (205)
|.+|..|...-+..|+-.. +.......-...+++.|..+++...+.|+.-. .+.+
T Consensus 411 E~LIk~~Y~~RI~eLt~ql--------------Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~-----------eeL~ 465 (518)
T PF10212_consen 411 EQLIKSYYMSRIEELTSQL--------------QHADSKAVHFYAECRALQKRLESAEKEKESLE-----------EELK 465 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 4567777666555554322 22222333344555555555555444333322 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
.+..++..||.+ |++.-+||.+|++-+.|.-+.|...+....+.+..
T Consensus 466 ~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 466 EANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666655 67778999999999999999988888887776554
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.94 E-value=54 Score=33.55 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKE 148 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE 148 (205)
+..+..+|+.+.++|..-+|.-.|++..++..-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777777777776666666665555433
No 34
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=83.81 E-value=27 Score=31.95 Aligned_cols=137 Identities=24% Similarity=0.322 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHh-------hChhHHhhHHHHHHHHHHhhHHHhhhhh----hhhHHHHHHHHhhHHHHHHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMITK-------YDEDVVKDLMPLVVNVLESLDLAFTENQ----EHEVELELLREDNEQLVTQYEREK 92 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~-------yG~d~V~~LmP~VV~vLE~Le~~~~~n~----~~~~Ele~Lred~e~Lv~q~ErEK 92 (205)
-.||..+..|+..|++. ||.|+ .-+=|-+|+ +.|.++..+.- ..-.++..++++.+.+-..++-.-
T Consensus 72 ReLA~kf~eeLrg~VGhiERmK~PiGHDv-EhiD~elvr--kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~ 148 (290)
T COG4026 72 RELAEKFFEELRGMVGHIERMKIPIGHDV-EHIDVELVR--KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148 (290)
T ss_pred HHHHHHHHHHHHHhhhhhheeccCCCCCc-cccCHHHHH--HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 46777777777666654 67774 233333333 33444433211 011122344444444322222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy2152 93 QLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL-HERYTELLK 167 (205)
Q Consensus 93 ~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L-h~r~~elir 167 (205)
......-+++.+ .+.+..+++..+.+|+-+|.+|+-+.+-..+.+.+|.-|=.+|-.++..+ |.+++++.+
T Consensus 149 ~EkeeL~~elee----le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~ 220 (290)
T COG4026 149 KEKEELLKELEE----LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVK 220 (290)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 111111112222 33455567777777777777777777777777766666666665553322 345555554
No 35
>KOG0999|consensus
Probab=83.69 E-value=45 Score=34.11 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhChhHHhhH--HHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHH---HHHHHHH------------
Q psy2152 29 SIYQEFEKMITKYDEDVVKDL--MPLVVNVLESLDLAFTENQEHEVELELLREDNEQL---VTQYERE------------ 91 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~L--mP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~L---v~q~ErE------------ 91 (205)
.+..|+++|...|..-.-... ---=..|||.=..+-.+..+.+.+.+..|-+.+++ ++||..-
T Consensus 12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E 91 (772)
T KOG0999|consen 12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE 91 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 345666777665543211110 00112466666667777777777777777776554 2333221
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 92 KQLR---KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 92 K~lR---k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
-.+= ..-|..+.+-=-.++.|.|.+...++..++++..+..+.....+--..+|-+..-|+.|+....-|-+-||..
T Consensus 92 esLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rllse 171 (772)
T KOG0999|consen 92 ESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSE 171 (772)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110 0000111111111233444455555555566666665555555555667778888999999999999999999
Q ss_pred HHHHHHHhhhhccC
Q psy2152 169 HMEYIERTKLMMGS 182 (205)
Q Consensus 169 ~~e~~er~k~~~~~ 182 (205)
|-++=|.|-+++.+
T Consensus 172 YSELEEENIsLQKq 185 (772)
T KOG0999|consen 172 YSELEEENISLQKQ 185 (772)
T ss_pred HHHHHHhcchHHHH
Confidence 99988888777654
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.20 E-value=53 Score=32.91 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
+..+..++..+|.+|++++..+..+.
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555554444
No 37
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=82.43 E-value=40 Score=30.91 Aligned_cols=137 Identities=21% Similarity=0.361 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHhhC--hhHHhhHHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHhhH-------HHHHHHHHHHHHHHH
Q psy2152 28 GSIYQEFEKMITKYD--EDVVKDLMPLVVNVLESLDLAFTE-NQEHEVELELLREDNE-------QLVTQYEREKQLRKA 97 (205)
Q Consensus 28 ~~Ig~EfE~lI~~yG--~d~V~~LmP~VV~vLE~Le~~~~~-n~~~~~Ele~Lred~e-------~Lv~q~ErEK~lRk~ 97 (205)
..+..-|..+|++|. +..+..+|-..=--+.++++=+.+ +.....+.+..+..++ ++-+-.+.|+.+|.+
T Consensus 138 ~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~Q 217 (309)
T PF09728_consen 138 EELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQ 217 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899887 334444443332222333332222 2223334444455555 666667788888844
Q ss_pred HH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 98 AD---QKLFQIEDA----------LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 98 ~E---eel~~~ED~----------~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
.. .++.++.|. |+.|...+-.++.+|+.++..+..|+-+....+..+-+.-..+.+++..+......
T Consensus 218 L~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~k 297 (309)
T PF09728_consen 218 LNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEK 297 (309)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 466666654 88999999999999999999999999877777766666666677777776654443
No 38
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=82.36 E-value=59 Score=32.88 Aligned_cols=8 Identities=13% Similarity=-0.068 Sum_probs=3.2
Q ss_pred HHHhhHHH
Q psy2152 56 VLESLDLA 63 (205)
Q Consensus 56 vLE~Le~~ 63 (205)
.++.++.+
T Consensus 157 ~~~~~~~~ 164 (1179)
T TIGR02168 157 RRAIFEEA 164 (1179)
T ss_pred HHHHHHHH
Confidence 33444433
No 39
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=82.36 E-value=33 Score=29.87 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
...+.+.|..+++.|+..|++++..+.+....+.+|+.+..++..-...|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777777777777777777666665533333
No 40
>KOG4674|consensus
Probab=81.81 E-value=67 Score=36.56 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
|.+.+.++..+++.|..-++.++.++..+.+-+..+...++++..++.-+.-.-..+...+..+...+..+-..--++-.
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999988888888888777777777777777777666666544444444
Q ss_pred Hhhh
Q psy2152 175 RTKL 178 (205)
Q Consensus 175 r~k~ 178 (205)
+.++
T Consensus 880 ~l~~ 883 (1822)
T KOG4674|consen 880 RLKS 883 (1822)
T ss_pred HHHH
Confidence 4333
No 41
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.67 E-value=19 Score=33.02 Aligned_cols=50 Identities=26% Similarity=0.398 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
.|.+++...+..|+.+...+.........+...+.+.|.+.-++++.++-
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~ 106 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQL 106 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555544444444444444455555555555555555543
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=81.55 E-value=35 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=14.0
Q ss_pred hhhhHHHHHHHHhhHHHHHHHH
Q psy2152 68 QEHEVELELLREDNEQLVTQYE 89 (205)
Q Consensus 68 ~~~~~Ele~Lred~e~Lv~q~E 89 (205)
.....+|..||.+||+|-..|-
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~ 477 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQ 477 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777655443
No 43
>KOG4673|consensus
Probab=80.88 E-value=36 Score=35.52 Aligned_cols=77 Identities=25% Similarity=0.241 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE---QELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE---~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
+.+=-+-++|.-.|+..|..|+..---|.--+.+...+...|.++- --|+++|..|.+||+-+++-|=+-.|+.-.+
T Consensus 858 eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EEL 937 (961)
T KOG4673|consen 858 EALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEEL 937 (961)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 3333445667777888888888876677666666666666666544 4578899999999999999997666665443
No 44
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.86 E-value=26 Score=30.45 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESI 126 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~ 126 (205)
++..+..+|.+.+.+++.++++....
T Consensus 108 ~l~~~~~~~~~~~~~l~~~~~~~~~~ 133 (206)
T PRK10884 108 KLNNIDNTWNQRTAEMQQKVAQSDSV 133 (206)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444455666665665555554443
No 45
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=80.84 E-value=40 Score=33.59 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRL 144 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl 144 (205)
|++.|..+++..+.+...+...++.....+.+|
T Consensus 442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333433333333333333
No 46
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.73 E-value=30 Score=30.14 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy2152 120 IESLESIVRML 130 (205)
Q Consensus 120 v~~Le~~~r~L 130 (205)
+..|+++|.+|
T Consensus 134 ~~~L~~~n~~L 144 (206)
T PRK10884 134 INGLKEENQKL 144 (206)
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 47
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=80.57 E-value=61 Score=33.34 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q psy2152 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQ 93 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~ 93 (205)
+++.|+..-...+....+++.++.+.+.+..+|+.++.
T Consensus 521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~ 558 (782)
T PRK00409 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKE 558 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555566666665555555555543
No 48
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=80.48 E-value=66 Score=33.11 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=21.1
Q ss_pred HHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHH
Q psy2152 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREK 92 (205)
Q Consensus 55 ~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK 92 (205)
.+|+.|+..-.+.+....+++.++.+.+.+..+|+.+.
T Consensus 515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555566666666555555555544
No 49
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.04 E-value=35 Score=31.22 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~ 180 (205)
.+..++...+..|+.+...+...-..+-.....+.-+-.++..+..++..+|. ....+++.+.++..+.
T Consensus 71 ~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~-~~~~~L~~L~ktNv~n 139 (314)
T PF04111_consen 71 KEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE-YASNQLDRLRKTNVYN 139 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCHHT--TTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCchh
Confidence 34445555555555555555444444444445555555555566666655543 3456677777776543
No 50
>KOG0977|consensus
Probab=79.57 E-value=72 Score=32.03 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhChh--HHhhHHH-HHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 30 IYQEFEKMITKYDED--VVKDLMP-LVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLF 103 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d--~V~~LmP-~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~ 103 (205)
+-.++.-+-+.+|.+ .|+.+-- -+..+.=.|+...........++..|+++++.|..+|+.--..+..+.+++-
T Consensus 68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~ 144 (546)
T KOG0977|consen 68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLD 144 (546)
T ss_pred HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444555666666665 2222211 1234555677777788888999999999999998888766555655555443
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.55 E-value=49 Score=30.12 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
++..++...|+........|..+.....+.+..+.++.+++..+.+.+..
T Consensus 216 ~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 216 QELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444333344444445555555555555555555555555543
No 52
>KOG4674|consensus
Probab=79.10 E-value=1.2e+02 Score=34.55 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHhhChhHH------hhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHH
Q psy2152 14 DSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVV------KDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQ 87 (205)
Q Consensus 14 ~~~~~mse~Vy~lA~~Ig~EfE~lI~~yG~d~V------~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q 87 (205)
+-.++++.||..--..++++|..+-+.||.-.| ..+--+++..=+-|+.+-.++.....++..|+..++++-..
T Consensus 16 ~~~~~V~~d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~ 95 (1822)
T KOG4674|consen 16 DISPLVDVDVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSE 95 (1822)
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 334577788888777999999999999997554 45677778877888888888887777777777775544222
Q ss_pred HHHHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH
Q psy2152 88 YEREKQL--R--------KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKK 153 (205)
Q Consensus 88 ~ErEK~l--R--------k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk 153 (205)
+..=-.. + +++..++..==.+.......+...|+.+..+|+.|..+++...+.+.-++.+-.+.+-
T Consensus 96 ~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s 171 (1822)
T KOG4674|consen 96 RSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQS 171 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211000 0 1111111110111112222233456667777888877777777666555555444443
No 53
>KOG1003|consensus
Probab=78.87 E-value=46 Score=29.48 Aligned_cols=66 Identities=29% Similarity=0.358 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
.++++.+.+-+|.++.+.+.+-.++..-+..-...+..+....-.+.+|+..-...+-+|.+++.-
T Consensus 129 ~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~e 194 (205)
T KOG1003|consen 129 SAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKE 194 (205)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHH
Confidence 456678888888888888888887766665555555555545555555555555555555555443
No 54
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=78.62 E-value=58 Score=30.41 Aligned_cols=68 Identities=24% Similarity=0.316 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy2152 114 KELNSKIESLESIVRMLELKSKNAS-------DHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMG 181 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~-------dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~ 181 (205)
...+..|.+|.++.-.|+.++|.++ -|+...-+.-..|..|+..|.+||.+......+.=+..|.+.+
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445557777777777777776665 3345556777788899999999999999888887777776543
No 55
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=77.82 E-value=53 Score=29.54 Aligned_cols=134 Identities=22% Similarity=0.262 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH----HHHHH
Q psy2152 24 QSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL----RKAAD 99 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l----Rk~~E 99 (205)
+.|+ .|..+..++--.-++ ... -+..+-..++.+-..-.....+++.++.. +.+++.+-+. .++++
T Consensus 10 ~~iq-~lD~e~~rl~~~~~~--~~~---~l~k~~~e~e~~~~~~~~~~~e~e~le~q----v~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 10 LAIQ-KLDLEKDRLEPRIKE--IRK---ALKKAKAELEALNKALEALEIELEDLENQ----VSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHH-HHHHHHHHHHHhhhh--hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4455 666666665444331 111 11222222333322333334444444444 6666655433 24444
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIE-----DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 100 eel~~~E-----D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
..+-.+= ..+..|...+..++.+|+.+...|........+.+..+.++...+.+.+.....+...-+.
T Consensus 80 ~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~ 152 (239)
T COG1579 80 EKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVA 152 (239)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432221 1244555566666666666666667777777777777777777777766666666555443
No 56
>KOG0250|consensus
Probab=77.49 E-value=72 Score=34.50 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 121 ~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
..+..+.-+.+.|.+....++..++++.+.|+.+++.+++.+.
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445666677777777777777777777777776443
No 57
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.71 E-value=32 Score=31.98 Aligned_cols=80 Identities=20% Similarity=0.324 Sum_probs=53.4
Q ss_pred hHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 44 d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~L 123 (205)
+.+..++|.||.=|-.|..++.....-..-+..|......+-.++. .-++-|..++..+.+-.+.+...++.|
T Consensus 308 ~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~-------~~~~~L~~ve~~~~~N~~~i~~n~~~l 380 (388)
T PF04912_consen 308 DPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLK-------KWEELLNKVEEKFKENMETIEKNVKKL 380 (388)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999887776666666666665444433333 334456666666766666677777776
Q ss_pred HHHHHHH
Q psy2152 124 ESIVRML 130 (205)
Q Consensus 124 e~~~r~L 130 (205)
++.+..|
T Consensus 381 e~Ri~~L 387 (388)
T PF04912_consen 381 EERIAKL 387 (388)
T ss_pred HHHHhcc
Confidence 6665544
No 58
>PRK09343 prefoldin subunit beta; Provisional
Probab=76.51 E-value=36 Score=26.96 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA---LEDDKKELNSKIESLESIVRMLELKSKNASDHV 141 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~---~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~ 141 (205)
..-+....++..+... ..++++++..=+.+-++|..+++. |..==. +.-+ ....+....+..+..-....+
T Consensus 14 ~~~q~lq~~l~~~~~q----~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~-vlv~-qd~~e~~~~l~~r~E~ie~~i 87 (121)
T PRK09343 14 AQLQQLQQQLERLLQQ----KSQIDLELREINKALEELEKLPDDTPIYKIVGN-LLVK-VDKTKVEKELKERKELLELRS 87 (121)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhH-HHhh-ccHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555 344556555555555666666532 111100 1100 012222233344444444677
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 142 YRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 142 ~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
.+++.++..+.+.+..+.....+++..+
T Consensus 88 k~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 88 RTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888888888888888877654
No 59
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=76.50 E-value=43 Score=29.26 Aligned_cols=53 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 75 ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127 (205)
Q Consensus 75 e~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~ 127 (205)
..|..++++|-.++|.||...++.+++...+-..|+.|+..+.+-+--|-.+.
T Consensus 137 ~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~E~ 189 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVKER 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666666666655555444444443
No 60
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.41 E-value=1.1e+02 Score=32.58 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy2152 146 EKEQELKKEYSILH 159 (205)
Q Consensus 146 ErE~elkkE~~~Lh 159 (205)
.+..++.+++..+.
T Consensus 884 ~~~~~l~~~l~~~~ 897 (1163)
T COG1196 884 EEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 61
>PRK11637 AmiB activator; Provisional
Probab=75.81 E-value=70 Score=29.93 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
+-.....++.+|..+..+.+.....|....+.....+..++..+..+.+.+..+
T Consensus 199 ~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 199 LLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444444444433
No 62
>PRK02119 hypothetical protein; Provisional
Probab=74.35 E-value=16 Score=26.83 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
...+..+|..||...-..+..+....+.+.+-......|++.+..|.+|..+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777777777777777777777777777665544
No 63
>PRK04406 hypothetical protein; Provisional
Probab=74.31 E-value=21 Score=26.48 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
.+..+|..||...-..+..+....+.+.+-..+...|++.+..|.+|..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777777766666777766667777777777665543
No 64
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.29 E-value=56 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 142 YRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 142 ~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
.-|+.|-..+.+|...|+.+++..|..+
T Consensus 110 evL~qr~~kle~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 110 EVLEQRFEKLEQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555443
No 65
>PRK12704 phosphodiesterase; Provisional
Probab=74.05 E-value=66 Score=31.62 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy2152 150 ELKKEYSILHERYTE 164 (205)
Q Consensus 150 elkkE~~~Lh~r~~e 164 (205)
+++++...+-.++.+
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (520)
T PRK12704 166 EARHEAAVLIKEIEE 180 (520)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 66
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.56 E-value=20 Score=29.31 Aligned_cols=54 Identities=28% Similarity=0.355 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhh--hhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHV--YRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~--~rleErE~elkkE~~~Lh~r~~e 164 (205)
.++.+|..++..|..+++.|...+++..... .-+.....+++.+...|..|...
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555443 23445555555555555554433
No 67
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.18 E-value=46 Score=32.81 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=42.2
Q ss_pred hhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 43 EDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122 (205)
Q Consensus 43 ~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~ 122 (205)
.|-|..|+-.+-.+=..|..+.++|.....|-+.|+.... ....+-++.+........++...|...+.+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~----------~id~~i~~av~~~~~~~~~~~~ql~~~~~~ 127 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ----------SIDQQIQQAVQSETQELTKEIEQLKSERQQ 127 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------hHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4667777777777777788888888875555555554322 222333333333333344444444444444
Q ss_pred HHHHHHHH
Q psy2152 123 LESIVRML 130 (205)
Q Consensus 123 Le~~~r~L 130 (205)
++....+|
T Consensus 128 ~~~~l~~l 135 (472)
T TIGR03752 128 LQGLIDQL 135 (472)
T ss_pred HHHHHHHH
Confidence 44444443
No 68
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.93 E-value=61 Score=27.89 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=62.9
Q ss_pred HhhChhHHhhHHHHHHHHHHhhHHHhhh---------------hhhhhHHHHHHHHhhHHHHH-HHHHHHHH--HHHHHH
Q psy2152 39 TKYDEDVVKDLMPLVVNVLESLDLAFTE---------------NQEHEVELELLREDNEQLVT-QYEREKQL--RKAADQ 100 (205)
Q Consensus 39 ~~yG~d~V~~LmP~VV~vLE~Le~~~~~---------------n~~~~~Ele~Lred~e~Lv~-q~ErEK~l--Rk~~Ee 100 (205)
..+++...-|||=..++++|...++..+ -+.++=.+.-|+.-...|+. +..+.+.+ ++..++
T Consensus 38 e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~ 117 (190)
T PF05266_consen 38 EELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEK 117 (190)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455566666676666666665554332 22222222333333333221 22222222 355555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQI---EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 101 el~~~---ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
++.+. -+..+.++++|..+|.+|+.....+..+-......+.|++-....++.+..+...++..
T Consensus 118 ~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~ 184 (190)
T PF05266_consen 118 KIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQS 184 (190)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 23455666666666666666544444333333345666666666666666665555544
No 69
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.89 E-value=68 Score=28.46 Aligned_cols=56 Identities=29% Similarity=0.272 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKE 154 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE 154 (205)
|..+.++|-++ .+++..|..-|.+++++.......+.-..+...+|-+...++.++
T Consensus 48 r~~h~eeLrqI----~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 48 RMAHVEELRQI----NQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 345555666666666666665555554455555555555555555
No 70
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.89 E-value=17 Score=28.72 Aligned_cols=56 Identities=30% Similarity=0.370 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
++++|-.++.+++.....|...+....+++..+-|.=+.|+-|-..|.+|..++-.
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778888888888888888888888888888888888888888888887766554
No 71
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=72.82 E-value=48 Score=26.68 Aligned_cols=103 Identities=22% Similarity=0.361 Sum_probs=58.6
Q ss_pred HHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 54 VNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 54 V~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
|.++|.|-+.. +..+.|+.-++.+ +.+++.+| ..+.+++..+-...+ +.+.....+..|+.+...|..+
T Consensus 15 ~~~ve~L~s~l---r~~E~E~~~l~~e----l~~l~~~r---~~l~~Eiv~l~~~~e-~~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 15 VQLVERLQSQL---RRLEGELASLQEE----LARLEAER---DELREEIVKLMEENE-ELRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445444443 3445567777777 44445543 344444433322221 1234455566666666666666
Q ss_pred hcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 134 SKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 134 ~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
....-.-.+--.|+-.+|+-.+..|.+=|...|.
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555555666667777888888888877776664
No 72
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.51 E-value=40 Score=25.60 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
|+.|.+.|..|..-..+...+...|+.+-.++|.+...-.+|.+.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333443334444444444444333
No 73
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=72.51 E-value=16 Score=29.56 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q psy2152 124 ESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGS 184 (205)
Q Consensus 124 e~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~ 184 (205)
+++...+..+++...+.+..|.....+....+..+..||.++.+..+..+-+.-.+...|.
T Consensus 43 ~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~ 103 (141)
T PF13874_consen 43 EEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGY 103 (141)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3344444444445555555555455555555556666666666665555555555544443
No 74
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=72.48 E-value=64 Score=27.97 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
++.+-+|.++..++.|..++...+...-..+.++..+.-++.+|+..-..++..|.++
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445444444444444444444444444444444444444444433
No 75
>PF13514 AAA_27: AAA domain
Probab=71.72 E-value=1.4e+02 Score=31.60 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy2152 28 GSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIE- 106 (205)
Q Consensus 28 ~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~E- 106 (205)
..+-..+..++..+|++....-.. ..+..|.......+........+..+.+.+-.+++.-......++.++..+-
T Consensus 760 ~~f~~~~~~L~~~l~~~~~~~~~~---~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~ 836 (1111)
T PF13514_consen 760 AAFEEQVAALAERLGPDLPEDPAE---EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLE 836 (1111)
T ss_pred HHHHHHHHHHHHHcCcccccCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777788888764443222 4445555555555555555556666655544444433333233332222211
Q ss_pred -------HHHH------HHHHHHHHHHHHHHHHHHHHH--hhhcchhhh-----hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 107 -------DALE------DDKKELNSKIESLESIVRMLE--LKSKNASDH-----VYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 107 -------D~~~------~E~keL~~~v~~Le~~~r~Le--~k~kn~~dq-----~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
+.+. .+.+.+..++..++....... ......... ...+..+..+++.++..|..++.++.
T Consensus 837 ~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~~l~~~l~~l~~~l~~l~~~~~~l~ 916 (1111)
T PF13514_consen 837 QAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPDELEAELEELEEELEELEEELEELQ 916 (1111)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 123344444444443321110 000001011 23455666666667777777777666
Q ss_pred HHHHHHHHHhhhh
Q psy2152 167 KTHMEYIERTKLM 179 (205)
Q Consensus 167 r~~~e~~er~k~~ 179 (205)
......-.+...+
T Consensus 917 ~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 917 EERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHH
Confidence 5554444333333
No 76
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.59 E-value=42 Score=25.48 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=43.7
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 57 LE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
||.||.+-..-+..-..+.+|.-+.+.| -+--.++-+|..+++...+.|+.+|.+|.....+
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieEL------------------KEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEEL------------------KEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555555555555555554433 2223445666777788888888888888777777
Q ss_pred hhhhhhhh
Q psy2152 137 ASDHVYRL 144 (205)
Q Consensus 137 ~~dq~~rl 144 (205)
+.+++..|
T Consensus 65 WQerlrsL 72 (79)
T COG3074 65 WQERLRAL 72 (79)
T ss_pred HHHHHHHH
Confidence 77766543
No 77
>KOG4673|consensus
Probab=71.32 E-value=1.4e+02 Score=31.44 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhCh--hHHhhHHHHHHHHHHhhHHHhhhhhhh-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 31 YQEFEKMITKYDE--DVVKDLMPLVVNVLESLDLAFTENQEH-EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED 107 (205)
Q Consensus 31 g~EfE~lI~~yG~--d~V~~LmP~VV~vLE~Le~~~~~n~~~-~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED 107 (205)
-.|++|.=+-||+ --...|=-.....==.+|.++++-+.. ..+-+.+|+..+-|+.|.+-=++.=.+.|+-.-.-||
T Consensus 529 ~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd 608 (961)
T KOG4673|consen 529 QAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARRED 608 (961)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666 223333334433334455555533221 2233577788888888887655544677788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh----cchhhhhhhhHH----HHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKS----KNASDHVYRLEE----KEQELKKEYSILHERYT---ELLKTHMEY 172 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~----kn~~dq~~rleE----rE~elkkE~~~Lh~r~~---elir~~~e~ 172 (205)
.+|+|+.+|+.++..-+-.+-.|...+ ....-||..|++ +-+-|.|+-..|.+|.- -+++..+..
T Consensus 609 ~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~ 684 (961)
T KOG4673|consen 609 MFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLE 684 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999999999888777777776555 444567766654 44567777777877765 456666544
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=71.31 E-value=1.2e+02 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMI 38 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI 38 (205)
|+-|..+-++++.-|
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (880)
T PRK03918 164 YKNLGEVIKEIKRRI 178 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 79
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=70.87 E-value=39 Score=25.01 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e 150 (205)
+.+..=-+.|...-.+|+.+.+.-..++..|..++.+..-|+.+|.++=.-
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555677888888999988888888888888888888787777665443
No 80
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.79 E-value=91 Score=28.61 Aligned_cols=62 Identities=29% Similarity=0.325 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
+..-.|+.+|...++.|+.+...+...+|...-..++|+|.-.-+.-+|.+|..|+.+|...
T Consensus 145 ~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34455666777777777777777777777777777899998888888999999999998765
No 81
>PRK02793 phi X174 lysis protein; Provisional
Probab=69.79 E-value=27 Score=25.60 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
++..+|..||...-..+..+....+.+.+-..+...|++.+..|.+|..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777777777777777777777777777777777777666544
No 82
>KOG0577|consensus
Probab=69.69 E-value=1e+02 Score=32.31 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q psy2152 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYR 143 (205)
Q Consensus 91 EK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~r 143 (205)
=|..|+++++.|..+|.-+..++.++..+++ |.|+....|+.....+
T Consensus 492 YKrmRrqHqkqL~~lE~r~k~e~eehr~~ld------rEle~~~~~f~~e~ek 538 (948)
T KOG0577|consen 492 YKRMRRQHQKQLLALEERLKGEREEHRARLD------RELETLRANFSAELEK 538 (948)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHHHhhhhHHHHH
Confidence 3668999999999999999999998887664 3344444444444333
No 83
>PRK04325 hypothetical protein; Provisional
Probab=69.66 E-value=26 Score=25.74 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
.+..+|..||...-..+..+....+.+.+-..+...|++.+..|.+|..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666667777777777666544
No 84
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.49 E-value=87 Score=32.23 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=37.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 75 ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 75 e~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
.....+.+.|+..+++++..-.+..+++.......+..++.|..+.+.|++.-+.+..+++.-+.+
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~ 572 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQE 572 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666554444455555555566666666666666666655555555444433
No 85
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=69.48 E-value=51 Score=26.54 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 142 YRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178 (205)
Q Consensus 142 ~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~ 178 (205)
.....+-..|+.++..|..||.-++.-|=+-.|++-.
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veE 100 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEE 100 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3344556678888899999998888877555554443
No 86
>PRK04863 mukB cell division protein MukB; Provisional
Probab=69.30 E-value=2e+02 Score=32.26 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhh
Q psy2152 28 GSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFT 65 (205)
Q Consensus 28 ~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~ 65 (205)
.+.+..|..+|...=+.+....|-.----+..+|.++.
T Consensus 253 q~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag 290 (1486)
T PRK04863 253 QSDRDLFKHLITESTNYVAADYMRHANERRVHLEEALE 290 (1486)
T ss_pred ccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHH
Confidence 45688999999999999999999887777777777754
No 87
>KOG2751|consensus
Probab=69.00 E-value=72 Score=31.28 Aligned_cols=53 Identities=25% Similarity=0.358 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
+....|-+.|.+++..++.+...|....+-......++.+++.+.-++|+.-|
T Consensus 186 ~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~ 238 (447)
T KOG2751|consen 186 KNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQ 238 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555556666665555555444444445567777777777776543
No 88
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=68.67 E-value=1e+02 Score=28.71 Aligned_cols=74 Identities=27% Similarity=0.333 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~ 180 (205)
+.+..+.+.+.++-+.|-..++.+-.+++..-++-.-+-++-++++.+.+.+..+-.+++..|.++.+......
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~ 103 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFN 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 55666666666666666666677766676666666677788899999999999999999999999999888654
No 89
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=68.47 E-value=83 Score=27.65 Aligned_cols=66 Identities=29% Similarity=0.353 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-------hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH-------VYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq-------~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+...+..+....|..+|..-+..|++.++.|...++..... +.-|++.--.+..+...|..++.+|
T Consensus 56 Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 56 QQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 47777888888888888888888888888887776654433 4456666666666666777777666
No 90
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=68.22 E-value=73 Score=26.88 Aligned_cols=54 Identities=26% Similarity=0.284 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
....+...++.....|...+..+..++..|......++..+..+..+-..++-.
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444554455555555555555555555555555555444433
No 91
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=68.10 E-value=97 Score=28.30 Aligned_cols=71 Identities=25% Similarity=0.321 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcchhhhhhhhHHHHH
Q psy2152 83 QLVTQYEREKQLRKAAD------QKLFQIEDALEDDKKELNSK-------IESLESIVRMLELKSKNASDHVYRLEEKEQ 149 (205)
Q Consensus 83 ~Lv~q~ErEK~lRk~~E------eel~~~ED~~~~E~keL~~~-------v~~Le~~~r~Le~k~kn~~dq~~rleErE~ 149 (205)
.|.+.|..|-.+|-.-. -++.++|...+.-.+.+..+ +..+.++...|+.|++.-...+.|.+-|=.
T Consensus 135 ~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~ 214 (267)
T PF10234_consen 135 SLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ 214 (267)
T ss_pred HHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555542211 25566666655555555555 444555555566666554445555554444
Q ss_pred HHHH
Q psy2152 150 ELKK 153 (205)
Q Consensus 150 elkk 153 (205)
-|++
T Consensus 215 sLq~ 218 (267)
T PF10234_consen 215 SLQS 218 (267)
T ss_pred HHHh
Confidence 4443
No 92
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.46 E-value=52 Score=24.97 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=40.5
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q psy2152 67 NQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALE--DDKKELNSKIESLESIVRMLELKSKNASDHVYRL 144 (205)
Q Consensus 67 n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~--~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl 144 (205)
-+....++..+... +.+++.+...-+.+-.++..+++.-. .-.-...-. ....+....|+.+.......+.++
T Consensus 8 ~q~l~~~~~~l~~~----~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~-~~~~ea~~~Le~~~e~le~~i~~l 82 (105)
T cd00632 8 LQQLQQQLQAYIVQ----RQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVK-QEKEEARTELKERLETIELRIKRL 82 (105)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhh-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444 34445555555566666666542211 111111110 122222333444444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy2152 145 EEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~el 165 (205)
+.+...+.++++.+..+..++
T Consensus 83 ~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 83 ERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554443
No 93
>PRK00295 hypothetical protein; Provisional
Probab=67.33 E-value=30 Score=25.07 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 117 NSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
..+|..||...-..+..+....+.+.+-..+...|++.+..|.+|..+
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666667777777777777777777666554
No 94
>KOG0250|consensus
Probab=67.16 E-value=1.9e+02 Score=31.40 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
.|.-.+..+.+..++++.+...++|.........++.+|.+...+++.++..-.+..
T Consensus 382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 333334446666777777777777777666666677777777777777666555544
No 95
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=66.87 E-value=55 Score=25.02 Aligned_cols=47 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
|+.|.+.|-.|...+.+....-+.|+..-.+||-+.+.-.+|.+.|+
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL 73 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333455555555555555555555444
No 96
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=66.60 E-value=1.4e+02 Score=29.42 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 154 EYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 154 E~~~Lh~r~~elir~~~e~~er~ 176 (205)
++..++..+.+++.....-+++.
T Consensus 119 eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 119 NLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 97
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=66.44 E-value=45 Score=23.83 Aligned_cols=65 Identities=22% Similarity=0.159 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHH--HHHHhhHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELE--LLREDNEQLVTQ 87 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele--~Lred~e~Lv~q 87 (205)
+.+..+|.-|-..+..+-..|+.-. ...-.|..+|-..+.+..-......-.. .+++..+.|..+
T Consensus 21 e~l~~~a~~i~~~i~~~~~~~~~~~--~~~~~vlaaLnla~e~~~~~~~~~~~~~~~~l~~~i~~L~~~ 87 (89)
T PF05164_consen 21 EYLRKAAELINEKINEIKKKYPKLS--PERLAVLAALNLADELLKLKRELDELEELERLEERIEELNER 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 5689999999999999999987433 3334566677666666554444332222 455554444433
No 98
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.22 E-value=2e+02 Score=31.18 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhhhcchhh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 117 NSKIESLESIVRMLELKSKNASD--HVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn~~d--q~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
...+..++..+..|+.++..+.. .+..++.....+++++..++.....+....
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~ 852 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433221 223344555555555555544444444333
No 99
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=65.92 E-value=24 Score=25.43 Aligned_cols=48 Identities=25% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 117 NSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
..+|..||...-.++..+....+.+.+-..+...|++.+..|.+|..+
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554443
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=65.81 E-value=1.5e+02 Score=29.75 Aligned_cols=6 Identities=0% Similarity=0.335 Sum_probs=2.5
Q ss_pred HHhhHH
Q psy2152 45 VVKDLM 50 (205)
Q Consensus 45 ~V~~Lm 50 (205)
.+.+.+
T Consensus 180 ~l~~~l 185 (880)
T PRK03918 180 RLEKFI 185 (880)
T ss_pred HHHHHH
Confidence 344444
No 101
>KOG3433|consensus
Probab=65.75 E-value=97 Score=27.42 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=58.8
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHH
Q psy2152 67 NQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEE 146 (205)
Q Consensus 67 n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleE 146 (205)
.++...++...+.+.-.|..+.|..|..|-..|++-.+ |..++..|..+...+...+.++.+.=--.=+
T Consensus 83 ~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~e-----------l~kklnslkk~~e~lr~el~k~~e~dpqv~~ 151 (203)
T KOG3433|consen 83 LQELESQLATGSQKKATLGESIENRKAGREETEERTDE-----------LTKKLNSLKKILESLRWELAKIQETDPQVFE 151 (203)
T ss_pred HHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 34445555555555566666777777776555544433 3333334444333333333333222122235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 147 KEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 147 rE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
....+.|++..--+|+|+-|-+-++|+-|.
T Consensus 152 k~~~~~K~~~eaanrwtDnI~il~dy~~rk 181 (203)
T KOG3433|consen 152 KKVHLEKTMAEAANRWTDNIFILIDYLYRK 181 (203)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 567788999999999999999999999553
No 102
>PF14182 YgaB: YgaB-like protein
Probab=65.62 E-value=49 Score=25.33 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY----TELLKTHM 170 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~----~elir~~~ 170 (205)
.|++.++.+++.-+.|....+- .....+.+..+.+++++..+|..+ +++|++|-
T Consensus 18 ~LQsElERCqeIE~eL~~l~~e--a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTeeVI~sy~ 75 (79)
T PF14182_consen 18 FLQSELERCQEIEKELKELERE--AELHSIQEEISQMKKELKEIQRVFEKQTEEVIRSYQ 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766665433321 124567778888889888888765 46888884
No 103
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=65.32 E-value=1.8e+02 Score=30.26 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=53.9
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLE 145 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rle 145 (205)
+......++..|+.+...+..+|..++..=+..-+.+..-=..|.+..+.-+.++..|+.+++.+...+.....++....
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQ 446 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQ 446 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444455555555555555555444432111111222222223333334455566666666666665555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhc
Q psy2152 146 EKEQELKKEYSILHERYTELL-----KTHMEYIERTKLMM 180 (205)
Q Consensus 146 ErE~elkkE~~~Lh~r~~eli-----r~~~e~~er~k~~~ 180 (205)
+--..+.-++..|.+...-.. |.-.||....+...
T Consensus 447 DELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~ 486 (717)
T PF09730_consen 447 DELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTR 486 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhh
Confidence 555555556655554322100 11356666666544
No 104
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.31 E-value=56 Score=27.93 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHHhh
Q psy2152 50 MPLVVNVLESLDLAFT 65 (205)
Q Consensus 50 mP~VV~vLE~Le~~~~ 65 (205)
|.-||..|..|.+...
T Consensus 82 l~~vI~fLq~l~~~~~ 97 (161)
T TIGR02894 82 LQDVISFLQNLKTTNP 97 (161)
T ss_pred HHHHHHHHHHHHhcch
Confidence 7789999999886533
No 105
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=65.17 E-value=2e+02 Score=30.91 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhhCh-----hHHhhHHHHHHHHHHhhHHH----hhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q psy2152 28 GSIYQEFEKMITKYDE-----DVVKDLMPLVVNVLESLDLA----FTENQEHEVELELLREDNEQLVTQYEREKQ 93 (205)
Q Consensus 28 ~~Ig~EfE~lI~~yG~-----d~V~~LmP~VV~vLE~Le~~----~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~ 93 (205)
..+..+|.+++..|.. --+..|-|.+......++.- .........++..|..+.+++...|..++.
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~ 316 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELS 316 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665432 22334444444444333332 222233334444444444444444444443
No 106
>KOG0980|consensus
Probab=63.77 E-value=2.1e+02 Score=30.68 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=12.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 76 LLREDNEQLVTQYEREKQLRKAADQKLFQIEDA 108 (205)
Q Consensus 76 ~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~ 108 (205)
...+.|..|-+++|.=...+-+.+-+.+...+.
T Consensus 463 ~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~ 495 (980)
T KOG0980|consen 463 DVEEENTNLNDQLEELQRAAGRAETKTESQAKA 495 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333333334334333333333333344444443
No 107
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=63.72 E-value=15 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.351 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
.+|.++++-+-.||+-.-.++||.+-.+|++++..++++..
T Consensus 26 ~ay~~i~~Yl~~~~~~~g~~~~~il~dildlfEe~aadG~~ 66 (103)
T PF06304_consen 26 IAYKAIQKYLWYFGPTDGRDMMEILSDILDLFEEAAADGKS 66 (103)
T ss_dssp HHHHHHHHHHHHHTBSSHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 47999999999999878889999999999999999998765
No 108
>PRK00736 hypothetical protein; Provisional
Probab=63.56 E-value=38 Score=24.50 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 117 NSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
..+|..||...-..+..+....+.+.+-..+...|++.+..|.+|..+
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666777777777777777777776644
No 109
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=63.39 E-value=1.2e+02 Score=27.66 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcchhhhhhhhH-HHHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLE---LKSKNASDHVYRLE-EKEQELKKEYSILHERYT 163 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le---~k~kn~~dq~~rle-ErE~elkkE~~~Lh~r~~ 163 (205)
..+..+|...|.........|+.+++.|.+.+.... .-++.|.|+--.+- -+.++|.+.+..|.+.+.
T Consensus 66 ~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qq 137 (258)
T PF15397_consen 66 QQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQ 137 (258)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777788888888777666543 23367777743332 255555555555555443
No 110
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.33 E-value=1.4e+02 Score=30.60 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy2152 146 EKEQELKKEY 155 (205)
Q Consensus 146 ErE~elkkE~ 155 (205)
++...|.+++
T Consensus 481 ~~I~~L~~~L 490 (652)
T COG2433 481 RRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 111
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=63.32 E-value=93 Score=26.39 Aligned_cols=66 Identities=26% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcchhhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLE-LKSKNASDHVYRLE-------EKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le-~k~kn~~dq~~rle-------ErE~elkkE~~~Lh~r~~elir~ 168 (205)
+...||.+..-. ++.++|.+|+--...-. ..+....+++.+|. ++-.++.++...|-+.||++|.+
T Consensus 89 ILa~e~~i~~~~-~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~ 162 (174)
T PF07426_consen 89 ILAEEDEIKSTA-ELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILL 162 (174)
T ss_pred HHHccHHHHHHH-HHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544 34455777764322211 11223333444433 44456666777777777777654
No 112
>KOG4360|consensus
Probab=63.29 E-value=1.8e+02 Score=29.55 Aligned_cols=75 Identities=17% Similarity=0.332 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
|.-.|.++|..++...|.+.....-.-.|+...-.+..++.-|+..+.++|.+.....-+-=+.-|-+.+-+.|.
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~p~ 308 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDAPK 308 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 444566666666666666554444444455666677888888999999999998888887777777777766654
No 113
>KOG0972|consensus
Probab=62.74 E-value=1.4e+02 Score=28.36 Aligned_cols=126 Identities=24% Similarity=0.275 Sum_probs=89.0
Q ss_pred HHHhhHHHhhhhhhhhHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 56 VLESLDLAFTENQEHEVELEL--------LREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~--------Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~ 127 (205)
-++.+....++..+-..|+++ +|.|+..--..++.=-+.++-.++.+-.++-.+..--++.-.-+++..++-
T Consensus 189 ~~~~vl~s~tDa~eW~lEvERVlPQLKVt~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SRE 268 (384)
T KOG0972|consen 189 PLQSVLQSNTDAIEWKLEVERVLPQLKVTLKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASRE 268 (384)
T ss_pred hHHHHHhhcchHHHHHHHHHHhhhhheehhccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555556654 455665555566666667777788888888777777777777777788888
Q ss_pred HHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhcc
Q psy2152 128 RMLELKSKNASDHVYRLEEKEQELKKEYSILHE---RYTELLKTHMEYIERTKLMMG 181 (205)
Q Consensus 128 r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~---r~~elir~~~e~~er~k~~~~ 181 (205)
+.|-+.+++...+..|+.-.-++++-.|+.+.. ..|..+..-|+-+|..|.-+-
T Consensus 269 K~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 269 KSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888887753 556777777888888885543
No 114
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=62.46 E-value=98 Score=26.34 Aligned_cols=128 Identities=21% Similarity=0.259 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHH-----HhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVL-----ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vL-----E~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR 95 (205)
.||-.|...+-+-++ .-|... .|+-|.-=.+. |+.--....+.+.+.=|..++.....++..|..=-...
T Consensus 33 ~dVi~L~e~Ld~~L~----~~~ar~-~gIcpvr~~ly~~~F~ELIRQVTi~C~ERGlLL~rvrde~~~~l~~y~~l~~s~ 107 (189)
T PF10211_consen 33 QDVIQLQEWLDKMLQ----QRQARE-TGICPVREELYSQCFDELIRQVTIDCPERGLLLLRVRDEYRMTLDAYQTLYESS 107 (189)
T ss_pred HHHHHHHHHHHHHHH----HhcCCc-ccccHHHHHHHHHHHHHHHHHHHhCcHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888776654444 444433 35555322221 22222244578888889999999999888874321111
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHH
Q psy2152 96 KAA-DQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSI 157 (205)
Q Consensus 96 k~~-Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~ 157 (205)
..+ -++..+.+ ..+.++..++..|+.++..|..+......+...++.+..+.+..-..
T Consensus 108 ~~f~~rk~l~~e----~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k 166 (189)
T PF10211_consen 108 IAFGMRKALQAE----QGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEK 166 (189)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222222 23567788888888888888877776666666666666555444333
No 115
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=62.02 E-value=1e+02 Score=26.50 Aligned_cols=82 Identities=23% Similarity=0.322 Sum_probs=48.4
Q ss_pred hhhhhhhhHHHHHHHHhhHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 64 FTENQEHEVELELLREDNEQLVT-QYEREKQLR--KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 64 ~~~n~~~~~Ele~Lred~e~Lv~-q~ErEK~lR--k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
-+...+...+++.|+.+|.-|-. |+..+|++. ...+.++-++=.....|.+.|..++...+..++.++.+.+...++
T Consensus 18 ~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~e 97 (194)
T PF15619_consen 18 QNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEE 97 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777777766532 344455542 223345555555666777777777777777777776666655555
Q ss_pred hhhhH
Q psy2152 141 VYRLE 145 (205)
Q Consensus 141 ~~rle 145 (205)
+-++.
T Consensus 98 l~k~~ 102 (194)
T PF15619_consen 98 LLKTK 102 (194)
T ss_pred HHHHH
Confidence 44433
No 116
>KOG0995|consensus
Probab=61.21 E-value=1.6e+02 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=11.2
Q ss_pred hHHHHHHHHhhHHHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYE 89 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~E 89 (205)
..+++.|+..|..|..+|.
T Consensus 234 ~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666654
No 117
>KOG0642|consensus
Probab=60.95 E-value=5.1 Score=40.02 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
.|+-|+-+|+++|+.||-+.|.++...+..-+.+.-+|---.|+..+|+.|
T Consensus 38 ~WElERaElqariAfLqgErk~qenlk~dl~rR~kmlE~~lkeerak~~~l 88 (577)
T KOG0642|consen 38 RWELERAELQARIAFLQGERKGQENLKMDLVRRIKMLEFALKEERAKYNKL 88 (577)
T ss_pred heehhhhhHHHHHHHHhcchhhhHHHHHHHHHHHhcccchhHHhhhhhhcc
Confidence 599999999999999999888888776655555544554444444444443
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.62 E-value=1e+02 Score=25.91 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKK-------EYSILHERYTELLKTHMEYIER 175 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk-------E~~~Lh~r~~elir~~~e~~er 175 (205)
.+.......|..|+.++..|..+++...+.+.....--..++. +|+.+-++..++=.-|-++++|
T Consensus 109 ~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 109 KELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777777777776666665554444444444 4444444444444444444444
No 119
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=60.50 E-value=1.3e+02 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
.+.|......|...+..|..+...|+...
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333
No 120
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.46 E-value=40 Score=26.88 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
++++-.++.+++.....+...+.....++..+-|.-+.|+-|-..|.+|..++
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777778888888777777777777777777777777777777777666643
No 121
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.33 E-value=1.2e+02 Score=26.63 Aligned_cols=65 Identities=18% Similarity=0.288 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
+.+++++|...-..|.+-++...+.+..|+..+|+.+++..+.. +.-.+-.+|...|..-.-+||
T Consensus 138 K~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe-------~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 138 KAHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLE-------ESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777777777777776655444 444444444444443333333
No 122
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.25 E-value=1.8e+02 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.220 Sum_probs=30.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 77 LREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 77 Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
++.+++++-.++..........+.++..++-.++.+.+....+++.|+..-.+|....+|.+
T Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA 119 (475)
T PRK10361 58 WRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLA 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444334444455555666666666666666555554444444444444
No 123
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=59.98 E-value=1.1e+02 Score=26.23 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 145 EEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~elir~~ 169 (205)
+.+-.+++-++..|.+||.++-+..
T Consensus 99 ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 99 EKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 124
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=59.72 E-value=77 Score=32.46 Aligned_cols=48 Identities=19% Similarity=0.265 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKK 153 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk 153 (205)
+-+++.+.+.+..+++.|+.+|+.|.-....+.+.+..|+.+-..+++
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777777777766665555555555544444443
No 125
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.71 E-value=44 Score=23.96 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE 148 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE 148 (205)
.+-.+.+.|..+|.+|..++..+..-+....+...|--+|.
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777888888777777665554444444443333
No 126
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=59.65 E-value=76 Score=24.13 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 82 EQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 82 e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
++.+.+++.||. ++++++.. +.-..+.|..+++.|.....-..+-+..|.+-|.++...+..+
T Consensus 30 E~k~~rl~~Ek~---kadqkyfa-----------~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~~~~~l~~~ 92 (96)
T PF08647_consen 30 EQKKLRLEAEKA---KADQKYFA-----------AMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHHH---HHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666653 44445544 5555777888888888777777777888888887777766655
No 127
>KOG0161|consensus
Probab=59.41 E-value=3.4e+02 Score=31.52 Aligned_cols=104 Identities=31% Similarity=0.352 Sum_probs=52.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh------
Q psy2152 74 LELLREDNEQLVTQYEREKQLRKAADQKLFQ---IEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRL------ 144 (205)
Q Consensus 74 le~Lred~e~Lv~q~ErEK~lRk~~Eeel~~---~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl------ 144 (205)
...+-.+...|..+++.|+.....+++.+.. -=+..+.+.+++..+++..+..+..++.+.+...+.+.-+
T Consensus 868 ~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~ 947 (1930)
T KOG0161|consen 868 LVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE 947 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455566666666654444432221 1233445555666666666666666655555544444333
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 145 ---------------EEKEQELKKEYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 145 ---------------eErE~elkkE~~~Lh~r~~elir~~~e~~er~k 177 (205)
+.+-..|..+.+.+-+++.++.+.=...-++.+
T Consensus 948 ~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~ 995 (1930)
T KOG0161|consen 948 LELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIR 995 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555556666666655444434333
No 128
>PRK12704 phosphodiesterase; Provisional
Probab=59.37 E-value=1.9e+02 Score=28.55 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 154 EYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 154 E~~~Lh~r~~elir~~~e~~er~k 177 (205)
++..+...+.+++......+++..
T Consensus 125 eLe~~~~~~~~~~~~~~~~l~~~a 148 (520)
T PRK12704 125 ELEKKEEELEELIEEQLQELERIS 148 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444555555555555443
No 129
>KOG0976|consensus
Probab=59.18 E-value=2.5e+02 Score=30.40 Aligned_cols=67 Identities=22% Similarity=0.283 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDH----VYRLEEKEQELKKEYSILHERYTELLKTHMEYIER 175 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq----~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er 175 (205)
.+-++..|+..+..+|++.|+-+..+.|.... +..|...-.++-.-+..||+..+++---.++|..+
T Consensus 118 lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tk 188 (1265)
T KOG0976|consen 118 LEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTK 188 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHH
Confidence 34456667777777777766655555443322 22333444445556778888777776666655443
No 130
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.06 E-value=65 Score=23.61 Aligned_cols=26 Identities=19% Similarity=0.265 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
-..+|..|+..|..+.+.-.+.+..+
T Consensus 29 q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 29 QEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555544444433
No 131
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=58.48 E-value=95 Score=24.88 Aligned_cols=84 Identities=31% Similarity=0.375 Sum_probs=52.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhcchhhhhhhh
Q psy2152 72 VELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLEL-------KSKNASDHVYRL 144 (205)
Q Consensus 72 ~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~-------k~kn~~dq~~rl 144 (205)
-++..|+-++.+|..|||.|+= +|.++|-.|+..+=.|++ ...+..++..-+
T Consensus 10 KeLVDLQIe~~rL~Eq~EaE~F---------------------ELk~~vL~lE~rvleLel~~~~~~~~~~~~~~~~~~~ 68 (108)
T PF14739_consen 10 KELVDLQIETNRLREQHEAEKF---------------------ELKNEVLRLENRVLELELHGDKAAPQIADLRHRLAEA 68 (108)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhhcchhhHHHhhHHHHHHHH
Confidence 3567788888888888888742 355555555544433332 223344445556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 145 EEKEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
+.-..++.-+|..|+.+|-.+-..|-.=..++
T Consensus 69 ~~~~~~l~~e~~~l~~~~~a~~k~~~~e~~k~ 100 (108)
T PF14739_consen 69 QEDRQELQEEYVSLKKNYQALPKAFEAEVAKN 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 77777888888888888887776665443333
No 132
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=58.20 E-value=52 Score=29.26 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEY 155 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~ 155 (205)
+|+.+|+.|+.++..|.-.+....-++..+.+|-+++-.++
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888777776655544445555555555543333
No 133
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=57.67 E-value=1.3e+02 Score=26.07 Aligned_cols=77 Identities=29% Similarity=0.363 Sum_probs=39.7
Q ss_pred HHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy2152 37 MITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-KAADQKLFQIEDALEDDKKE 115 (205)
Q Consensus 37 lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-k~~Eeel~~~ED~~~~E~ke 115 (205)
|..+||+.+-.--. +.|+.. ......++..++.+ |...-+.++.+ ..+-.+|-.+|..|. +
T Consensus 125 Ll~~~g~naW~~~n-------~~Le~~---~~~le~~l~~~k~~----ie~vN~~RK~~Q~~~~~~L~~Le~~W~----~ 186 (221)
T PF05700_consen 125 LLSKYGENAWLIHN-------EQLEAM---LKRLEKELAKLKKE----IEEVNRERKRRQEEAGEELRYLEQRWK----E 186 (221)
T ss_pred HHHHHhHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH----H
Confidence 66788887654333 222222 22223344555555 34444444332 233356677777775 4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLE 131 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le 131 (205)
+..++-.++..+..|+
T Consensus 187 ~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 187 LVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555556666655555
No 134
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=57.62 E-value=1.8e+02 Score=27.95 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=24.3
Q ss_pred HHHHHhhHHHhhhhhhhhHHHHHHHH----hhHHHHHHHHHHHHHHHHHHH
Q psy2152 54 VNVLESLDLAFTENQEHEVELELLRE----DNEQLVTQYEREKQLRKAADQ 100 (205)
Q Consensus 54 V~vLE~Le~~~~~n~~~~~Ele~Lre----d~e~Lv~q~ErEK~lRk~~Ee 100 (205)
-.++|.|.............++.|+. |..-+...|+-||--..+.|+
T Consensus 215 ~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEe 265 (395)
T PF10267_consen 215 QKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEE 265 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34456666666666666666666666 333344444444443333333
No 135
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=57.50 E-value=2.1e+02 Score=28.63 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEY 172 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~ 172 (205)
..++.+...+..+.+.|+.....++.++.+.. ..+-+-.+|++++....+-|+.++..+-+.
T Consensus 341 ~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~----~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~ 402 (754)
T TIGR01005 341 KSLLMQADAAQARESQLVSDVNQLKAASAQAG----EQQVDLDALQRDAAAKRQLYESYLTNYRQA 402 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555566665555555554333 334555677888888888888887777553
No 136
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=57.46 E-value=49 Score=33.83 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=37.2
Q ss_pred HHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 77 LREDNEQLVTQYEREKQL-RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLEL 132 (205)
Q Consensus 77 Lred~e~Lv~q~ErEK~l-Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~ 132 (205)
||+. +.+|++||+. +++......++....+++...|...+.+||.+.|=|.+
T Consensus 2 LRdk----L~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~n 54 (654)
T PF09798_consen 2 LRDK----LELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNN 54 (654)
T ss_pred hHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666 4556666665 34444567777888888888899999999988776643
No 137
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=57.22 E-value=99 Score=24.71 Aligned_cols=10 Identities=40% Similarity=0.481 Sum_probs=6.7
Q ss_pred HHHHHHHHHH
Q psy2152 154 EYSILHERYT 163 (205)
Q Consensus 154 E~~~Lh~r~~ 163 (205)
|+..|.+|.+
T Consensus 141 E~~kLk~rL~ 150 (151)
T PF11559_consen 141 EIEKLKERLN 150 (151)
T ss_pred HHHHHHHHhc
Confidence 6777777654
No 138
>KOG0612|consensus
Probab=57.09 E-value=1.4e+02 Score=32.92 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 89 EREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 89 ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
+..+.+|++++.-..++.+..+ +.+++..++..|++....|
T Consensus 560 ~~~~kl~~~~~e~~~~iq~~~e-~~~~~~d~l~~le~~k~~l 600 (1317)
T KOG0612|consen 560 EDAGKLRKHSKELSKQIQQELE-ENRDLEDKLSLLEESKSKL 600 (1317)
T ss_pred HHHhhHhhhhhhhhHHHHHHhh-ccccHHHHHHHHHHHHHHH
Confidence 3344444444433333333333 4445555555555444433
No 139
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=57.03 E-value=1.7e+02 Score=27.43 Aligned_cols=10 Identities=20% Similarity=0.308 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q psy2152 166 LKTHMEYIER 175 (205)
Q Consensus 166 ir~~~e~~er 175 (205)
|-.|--.+++
T Consensus 219 i~KYK~~le~ 228 (319)
T PF09789_consen 219 INKYKSALER 228 (319)
T ss_pred HHHHHHHHHh
Confidence 3347777774
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=56.77 E-value=1.8e+02 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=24.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 141 VYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 141 ~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
+..|+.+-....|...+|.+-|+.-+..+.+-+-
T Consensus 608 ~~~l~~~~~~~ekr~~RLkevf~~ks~eFr~av~ 641 (722)
T PF05557_consen 608 IAELKAELASAEKRNQRLKEVFKAKSQEFREAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888888888888777766554
No 141
>PRK00846 hypothetical protein; Provisional
Probab=56.36 E-value=63 Score=24.35 Aligned_cols=49 Identities=14% Similarity=0.090 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
++..+|..||...-..+..+-...+.+.+.......|++.+..|.+|..
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666666666666666666666666666666665543
No 142
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.34 E-value=1.8e+02 Score=27.51 Aligned_cols=44 Identities=23% Similarity=0.269 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKE 154 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE 154 (205)
.+.+.++..|++|+.....++.+.+...+++..+.....++.++
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke 401 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE 401 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555555555555555544444444443
No 143
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.11 E-value=29 Score=25.25 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
|.++..+++|..++.+|+.+|..|...+.
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45666677888888888888888766553
No 144
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=55.93 E-value=1.7e+02 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhChhH-HhhHHHHHHHHHHhhHHHh
Q psy2152 23 VQSLAGSIYQEFEKMITKYDEDV-VKDLMPLVVNVLESLDLAF 64 (205)
Q Consensus 23 Vy~lA~~Ig~EfE~lI~~yG~d~-V~~LmP~VV~vLE~Le~~~ 64 (205)
+-.-+..+++++..+...-+... ..+-.-.+=+.++-|+-..
T Consensus 81 in~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 81 INAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHH
Confidence 34445567777777776666552 2222333445555555543
No 145
>KOG0982|consensus
Probab=55.92 E-value=2.2e+02 Score=28.31 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 97 AADQKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
++.+=+.-+|-.-.-++..++.++.+|+++|-.|
T Consensus 283 rhrEil~k~eReasle~Enlqmr~qqleeentel 316 (502)
T KOG0982|consen 283 RHREILIKKEREASLEKENLQMRDQQLEEENTEL 316 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444455555666666666655544
No 146
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.86 E-value=79 Score=23.18 Aligned_cols=57 Identities=19% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhhcchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 119 KIESLESIVRMLELKSKNASDH-VYRLEEKEQELKKEYSILHERYTELLKTHMEYIER 175 (205)
Q Consensus 119 ~v~~Le~~~r~Le~k~kn~~dq-~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er 175 (205)
.+..++.........+....+. +..|++++..|-.++...+..-...+...+.-++.
T Consensus 29 ~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~ 86 (127)
T smart00502 29 IIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQ 86 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333 34566777777766666666666655555444443
No 147
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.83 E-value=2.5e+02 Score=28.99 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 81 NEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 81 ~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
.+.|+..++.++..-.+..+++.......+...++|..+.+.|+.+-+.+..++
T Consensus 518 ~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 518 LNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433333334444444444444444444444444444443333
No 148
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=55.60 E-value=1.2e+02 Score=25.39 Aligned_cols=58 Identities=24% Similarity=0.286 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-------hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNAS-------DHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~-------dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
.|......|++...+|+...+.+........ -...++.+|+.++.+.|..+.+|....
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~ 157 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDE 157 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444455555555544444444333333 235678899999999999988887654
No 149
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=55.46 E-value=93 Score=23.89 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=46.6
Q ss_pred HhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 63 AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALE--DDKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 63 ~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~--~E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
....-+....++..+... +.++++++..-+..-++|..+.+.-. .-.-...-. ....+....|..+.....+.
T Consensus 8 ~~~~~q~~q~~~~~l~~q----~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~-~~~~e~~~~l~~r~e~ie~~ 82 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQ----KQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVK-TDKEEAIQELKEKKETLELR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhhe-ecHHHHHHHHHHHHHHHHHH
Confidence 444445555555566665 55667766666666666666643210 000000000 11111222233333333444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 141 VYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 141 ~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
+..++.+...+.+.+..+.....+++
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666666666666655554
No 150
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.31 E-value=1.1e+02 Score=31.74 Aligned_cols=73 Identities=19% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMG 181 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~ 181 (205)
+..|.+.+...+...++++-+|.............++-+...|+.|...+..|-+-++.-|-++=+.|=+++.
T Consensus 39 l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQK 111 (717)
T PF09730_consen 39 LENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQK 111 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3444555555566666666666666665656666677777777777777777777777777777776666654
No 151
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=55.26 E-value=1.3e+02 Score=25.63 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hh-------hhhhhhHHHHH---------------HHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN-AS-------DHVYRLEEKEQ---------------ELKKEYSI 157 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn-~~-------dq~~rleErE~---------------elkkE~~~ 157 (205)
.+...+..+..+.+.....+.+.+.++..|..|.+. -. .++.-+..+.. +=++-|--
T Consensus 99 ~i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~ 178 (219)
T PF08397_consen 99 YITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEFEKQSLREALLEERRRYCF 178 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888888888888864 11 11222222222 23457888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy2152 158 LHERYTELLKTHMEYIERTKLMMGSGSS 185 (205)
Q Consensus 158 Lh~r~~elir~~~e~~er~k~~~~~~~~ 185 (205)
|.++|-.++...+.+..+...+..+..+
T Consensus 179 lv~~~~~~~~~~~~~~~~~~~~L~~~~~ 206 (219)
T PF08397_consen 179 LVEKHCSVVKSELAFHNEAVEHLQEKLD 206 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8889999999988888885544443333
No 152
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=55.20 E-value=2.9 Score=32.22 Aligned_cols=48 Identities=35% Similarity=0.501 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHh
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRED 80 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred 80 (205)
..++|.+....|.++-|...+-.|..-++.|. .++.....++..|...
T Consensus 7 ~~~~F~~~~rGYd~~eVD~fl~~l~~~~~~l~---~e~~~L~~~~~~l~~~ 54 (131)
T PF05103_consen 7 RNKEFKKSMRGYDPDEVDDFLDELAEELERLQ---RENAELKEEIEELQAQ 54 (131)
T ss_dssp HH----EEEEEEEHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCCT
T ss_pred hhCccCCCCCCcCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 46789999999999999999988877766555 5666666666666666
No 153
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.20 E-value=83 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=8.1
Q ss_pred HHHHHHHHhhHHHhhhhhh
Q psy2152 51 PLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 51 P~VV~vLE~Le~~~~~n~~ 69 (205)
-+|-.+++....+-.++.+
T Consensus 11 ~ki~~aveti~~Lq~e~ee 29 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEE 29 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333
No 154
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=55.15 E-value=88 Score=23.52 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
.++=|+.+.|-..+...+..+......++.++.+...-+..+-..--+|-..+..+.+.|.+-|
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI 66 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEI 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555444433333333333333333333334443333
No 155
>PRK04863 mukB cell division protein MukB; Provisional
Probab=55.02 E-value=3.5e+02 Score=30.39 Aligned_cols=12 Identities=8% Similarity=0.260 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESL 123 (205)
Q Consensus 112 E~keL~~~v~~L 123 (205)
+...+...+..+
T Consensus 412 el~q~qq~i~~L 423 (1486)
T PRK04863 412 RAIQYQQAVQAL 423 (1486)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 156
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=54.62 E-value=29 Score=28.99 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~L 130 (205)
.|+...|+|+.+|++|+.++.--
T Consensus 31 eWE~Q~kemq~kieql~~e~~~~ 53 (141)
T PF14818_consen 31 EWEQQWKEMQRKIEQLQKEVKPR 53 (141)
T ss_pred HHHHHHHHHHHHHHHHHhhcchh
Confidence 58888888888888888776543
No 157
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.54 E-value=1.8e+02 Score=26.86 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKK 153 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk 153 (205)
++.++.+...+..++....++...+....+++.+
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 158
>KOG0996|consensus
Probab=53.67 E-value=3.5e+02 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 149 QELKKEYSILHERYTELLKTHMEY 172 (205)
Q Consensus 149 ~elkkE~~~Lh~r~~elir~~~e~ 172 (205)
+-...++.-|..+++..++.+.++
T Consensus 503 ~vaesel~~L~~~~~~~~~~~e~l 526 (1293)
T KOG0996|consen 503 DVAESELDILLSRHETGLKKVEEL 526 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333346666666666666665443
No 159
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=53.32 E-value=2.6e+02 Score=28.37 Aligned_cols=93 Identities=23% Similarity=0.279 Sum_probs=51.2
Q ss_pred CCCCcccccH---HHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhh-------hhhhHHHHHHHHhh
Q psy2152 12 HDDSHIVMSE---KVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN-------QEHEVELELLREDN 81 (205)
Q Consensus 12 ~~~~~~~mse---~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n-------~~~~~Ele~Lred~ 81 (205)
.|.+.++.|+ ...+-+..+-+|++.|...+..-+ .--+.|..+.... +..-.++..-..|.
T Consensus 71 ~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv---------~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~ 141 (617)
T PF15070_consen 71 PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQV---------ENNEQLSRLNQEQEERLAELEEELERLQEQQEDR 141 (617)
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 567778888999999988877532 1122222222111 11111222233456
Q ss_pred HHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHH
Q psy2152 82 EQLVTQYEREKQL--R-----KAADQKLFQIEDALEDDK 113 (205)
Q Consensus 82 e~Lv~q~ErEK~l--R-----k~~Eeel~~~ED~~~~E~ 113 (205)
.+|+.+++.+|.. | +...+.|.++++.|-.=.
T Consensus 142 ~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 142 QKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 6777777777765 3 555667788888654433
No 160
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=53.27 E-value=1.2e+02 Score=24.66 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
+=+....-++.|.++|+.|........--.+...+.+..+.+--.++..+...+|...
T Consensus 55 vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 55 VSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333333334444444444444444555555555443
No 161
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=53.09 E-value=2.6e+02 Score=28.24 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=30.1
Q ss_pred hhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q psy2152 64 FTENQEHEVELELLREDNEQLVTQYEREKQLRKAA---DQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNA 137 (205)
Q Consensus 64 ~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~---Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~ 137 (205)
...+...+.++..|+..+++|-..|...+..-.+. .+.+....+.+..++..|..+.+.+...++.|+.-+...
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444445555444444443333321111 122222333344444444444444444444444444433
No 162
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=52.83 E-value=1.1e+02 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 141 VYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 141 ~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
+.....++++++.+-....+.++..+
T Consensus 62 ~~~~~~~~qq~r~~~e~~~e~ik~~l 87 (110)
T PF10828_consen 62 VEEQQKREQQLRQQSEERRESIKTAL 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555555444444444
No 163
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=52.58 E-value=4.6 Score=39.66 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKKEL 116 (205)
Q Consensus 102 l~~~ED~~~~E~keL 116 (205)
|..+|+.++.|..++
T Consensus 442 L~~vEeELrre~~~m 456 (495)
T PF12004_consen 442 LMAVEEELRREHAEM 456 (495)
T ss_dssp ---------------
T ss_pred hhhhhhhhhhhHHHH
Confidence 344444444444333
No 164
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=52.34 E-value=1.5e+02 Score=28.20 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNAS---DHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~---dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
.+.+.+..+++.|+.+-+.+..+.+... .....+-++-.++++++..|.....++-....+.+-+.-.+-...+|-
T Consensus 35 ~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~ 113 (425)
T PRK05431 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPV 113 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3444556666666666655554443211 123446667778888888888888888888777777777666666655
No 165
>PHA02047 phage lambda Rz1-like protein
Probab=51.80 E-value=56 Score=26.04 Aligned_cols=52 Identities=10% Similarity=0.100 Sum_probs=25.8
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 135 kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
++.+.|+.-++-|...+.+-.++|+++-+.-=+.-..-++.++.|..+.+|.
T Consensus 37 ~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD~PVPp 88 (101)
T PHA02047 37 KRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWADRPVPP 88 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCh
Confidence 3333344444444444444444444443333333334566777777766654
No 166
>KOG4552|consensus
Probab=51.65 E-value=1.9e+02 Score=26.32 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=16.9
Q ss_pred HHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH
Q psy2152 53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (205)
Q Consensus 53 VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~Er 90 (205)
.|++|++|++--...+. -.++..-..+.++++.+||.
T Consensus 45 ~v~il~Ll~~kd~ef~~-llkla~eq~k~e~~m~~Lea 81 (272)
T KOG4552|consen 45 TVNILKLLDSKDDEFKT-LLKLAPEQQKREQLMRTLEA 81 (272)
T ss_pred HHHHHHHHHhccHHHHH-HHHHhHhHHHHHHHHHHHHH
Confidence 35777777654333332 12222333344444444443
No 167
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=51.29 E-value=1.7e+02 Score=25.79 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
=.+.+...+.+|+.....+........+++.+|......|...+..+..+..-+.-.+
T Consensus 86 LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 86 LAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666666666666655555555444
No 168
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=51.17 E-value=1.9e+02 Score=27.83 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=6.5
Q ss_pred hHHHHHHHHhhHH
Q psy2152 71 EVELELLREDNEQ 83 (205)
Q Consensus 71 ~~Ele~Lred~e~ 83 (205)
..++..|++..++
T Consensus 70 ~~~~~~l~~~l~~ 82 (525)
T TIGR02231 70 PERLAELRKQIRE 82 (525)
T ss_pred cHHHHHHHHHHHH
Confidence 3355555555333
No 169
>KOG4603|consensus
Probab=51.16 E-value=1.7e+02 Score=25.73 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhhcchhhhhh
Q psy2152 72 VELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELN---------SKIESLESIVRMLELKSKNASDHVY 142 (205)
Q Consensus 72 ~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~---------~~v~~Le~~~r~Le~k~kn~~dq~~ 142 (205)
.++..|..++.. |+..++.- .+.+--+ +.|.+.|. ..+.+|..+++..+.+++|...-..
T Consensus 79 eel~~ld~~i~~----l~ek~q~l---~~t~s~v----eaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~ 147 (201)
T KOG4603|consen 79 EELQVLDGKIVA----LTEKVQSL---QQTCSYV----EAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN 147 (201)
T ss_pred HHHHHHhHHHHH----HHHHHHHH---HHHHHHH----HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678888888544 44333221 1223333 33444444 4444455555544444444433321
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 143 -RLEEKEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 143 -rleErE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
=.-+-..+..++|..-|.-+.+.=|-+.+.+++.
T Consensus 148 ~vtpedk~~v~~~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 148 HVTPEDKEQVYREYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1346667889999999998888888777777654
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=51.16 E-value=3.2e+02 Score=28.74 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 118 SKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 118 ~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k 177 (205)
.-|+.|+.+|+.|-.+.-.-..++.-++=+...|..|+..+...|.++...|..-++-.+
T Consensus 608 K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~ 667 (786)
T PF05483_consen 608 KNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKS 667 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Confidence 346678888888887777777777778888888888888888888888888876666433
No 171
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=50.68 E-value=1.1e+02 Score=23.15 Aligned_cols=29 Identities=24% Similarity=0.413 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
..++..+++..|+..|+.....+.....+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~ 36 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLPD 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 57889999999999999999888887765
No 172
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=50.56 E-value=1.7e+02 Score=27.80 Aligned_cols=74 Identities=19% Similarity=0.176 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchh---hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNAS---DH-VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~---dq-~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
++.+..+++.|+.+-+.+....+... +. ...+-++-.+++.+...|.....++-....+.+.+.-.+-...+|.
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~ 116 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPV 116 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 34455555555555444443332211 11 4456667777888888888888887777777777777666666655
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=50.40 E-value=1.8e+02 Score=25.77 Aligned_cols=61 Identities=25% Similarity=0.273 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
+.+|+..+...+.....+...|+.-++.....-.+..+....+..||..|.+..+++.+.|
T Consensus 44 L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~ 104 (230)
T PF10146_consen 44 LLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEY 104 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555566666666666666666666666666677778888888888887774
No 174
>KOG1029|consensus
Probab=49.96 E-value=3.6e+02 Score=29.04 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=14.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 141 VYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 141 ~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+..+-.+..+|.-|+..|..++..|
T Consensus 432 iv~~nak~~ql~~eletLn~k~qql 456 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQL 456 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666555443
No 175
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.84 E-value=1.9e+02 Score=28.24 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESI 126 (205)
Q Consensus 58 E~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~ 126 (205)
+.|..+.++..+....+..++.++..++.+|+.+...+.+.-++|-.-+..++++...+....++-.+.
T Consensus 185 ~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~re~ 253 (420)
T COG4942 185 AELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREA 253 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 176
>PLN02372 violaxanthin de-epoxidase
Probab=49.34 E-value=2.5e+02 Score=27.66 Aligned_cols=41 Identities=10% Similarity=0.196 Sum_probs=27.9
Q ss_pred cccccccCCCCcccccHHHHHHHHHHHHHHHHHHH---hhChhH
Q psy2152 5 QETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMIT---KYDEDV 45 (205)
Q Consensus 5 ~e~vy~~~~~~~~~mse~Vy~lA~~Ig~EfE~lI~---~yG~d~ 45 (205)
+-|||..++.=..-..+++...|.++|..|..+|. .+|++.
T Consensus 317 GAVvyTrs~~lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep 360 (455)
T PLN02372 317 GAVVYTRSSTLPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEP 360 (455)
T ss_pred ceEEEecCCCCChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCc
Confidence 34566555432233567889999999999998874 466663
No 177
>PRK09039 hypothetical protein; Validated
Probab=49.21 E-value=2.2e+02 Score=26.37 Aligned_cols=54 Identities=15% Similarity=0.152 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
+...+|..|+.++..|...+-...+.+...+.+.++.+..+..|..+.+..+-.
T Consensus 134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666666666666666777777788888888888887777777644
No 178
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.20 E-value=1.7e+02 Score=25.02 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
+..+...+......+....+......+...++..++...+.++..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (302)
T PF10186_consen 93 LEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQ 137 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444444444444444333
No 179
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=49.01 E-value=3e+02 Score=27.90 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=28.1
Q ss_pred hcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 134 SKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 134 ~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
+.|-.--++|.-.+-.+||.-+..|.+++..|-..+|++..
T Consensus 148 lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~ 188 (617)
T PF15070_consen 148 LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTS 188 (617)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 33444446777777778888888888887777777766543
No 180
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.68 E-value=1.1e+02 Score=22.90 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhh------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASD------HVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~d------q~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
|......+...++.|..++..|....+...- -+.-|..=|.+|..-+..+..|-+.++...++.+.+.
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~k 83 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKK 83 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433321 1234666667777777777777777777777666553
No 181
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=47.90 E-value=2.7e+02 Score=27.63 Aligned_cols=58 Identities=12% Similarity=0.098 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---hhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKN---ASD----HVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn---~~d----q~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
+.+.+...|+.|+.+...|+..... |.| .+..+..+-.+++.++..+-+++.++.-..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~ 628 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQL 628 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666677777776666655532 222 344555555566666666666666555433
No 182
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=47.35 E-value=68 Score=24.23 Aligned_cols=64 Identities=30% Similarity=0.324 Sum_probs=43.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 75 ELLREDNEQLVTQYEREKQLRKAADQKLF-------QIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 75 e~Lred~e~Lv~q~ErEK~lRk~~Eeel~-------~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
..|..|-.+|-.||+.|+..|...+.=+. .+--.+-.-.++|..-|+.|+.++-.|+.++....
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L~ 81 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSLY 81 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666677778888888877665322 12234555778888888888888888887765443
No 183
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=47.25 E-value=3.9e+02 Score=28.65 Aligned_cols=45 Identities=33% Similarity=0.376 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
+..++..++.+...+....+...+....++.+-.++..+...+..
T Consensus 861 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~ 905 (1163)
T COG1196 861 LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKE 905 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444444444444443
No 184
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=47.16 E-value=2.5e+02 Score=26.42 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
++.-..++-++-.....+.+-+..++..|......+.......... +-+=.+|.++.+.....|..++..|-+...
T Consensus 326 ~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~----~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~ 401 (458)
T COG3206 326 RQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKL----QVQLRELEREAEAARSLYETLLQRYQELSI 401 (458)
T ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666667777777777777777777777777666654443 444567888888888999998888888877
Q ss_pred Hh
Q psy2152 175 RT 176 (205)
Q Consensus 175 r~ 176 (205)
..
T Consensus 402 ~~ 403 (458)
T COG3206 402 QE 403 (458)
T ss_pred hh
Confidence 76
No 185
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.08 E-value=2.8e+02 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=10.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy2152 139 DHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 139 dq~~rleErE~elkkE~~~Lh 159 (205)
+.+..++.+..+++++|..+-
T Consensus 346 ~~le~L~~el~~l~~~l~~~a 366 (563)
T TIGR00634 346 ESLEALEEEVDKLEEELDKAA 366 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555554433
No 186
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=47.04 E-value=1.8e+02 Score=24.70 Aligned_cols=19 Identities=26% Similarity=0.442 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSK 119 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~ 119 (205)
++.+-|+.|......|..+
T Consensus 86 rl~~rE~~L~~~~~~L~~~ 104 (201)
T PF12072_consen 86 RLQQREEQLDRRLEQLEKR 104 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 187
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.00 E-value=1.5e+02 Score=29.69 Aligned_cols=69 Identities=22% Similarity=0.371 Sum_probs=0.0
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLV----TQYEREKQLR----KAADQKLFQIEDALEDDKKELNSKIESLESIVR 128 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv----~q~ErEK~lR----k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r 128 (205)
+|...+...+.-..|..||.+.|.-. +.|-|||.-| -..++++..-|..-..|++.|.++++.|-++++
T Consensus 451 mdk~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 451 MDKTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
No 188
>PRK12705 hypothetical protein; Provisional
Probab=46.85 E-value=3e+02 Score=27.29 Aligned_cols=9 Identities=44% Similarity=0.648 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy2152 101 KLFQIEDAL 109 (205)
Q Consensus 101 el~~~ED~~ 109 (205)
++.+-|+++
T Consensus 85 rl~~~e~~l 93 (508)
T PRK12705 85 RLVQKEEQL 93 (508)
T ss_pred HHHHHHHHH
Confidence 333333333
No 189
>KOG4687|consensus
Probab=46.70 E-value=2.6e+02 Score=26.50 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
|-+|+.+.-....-.+.|+..+..|.--+++-.|.-.-|=-....+|....+|.
T Consensus 148 elqwrrdeanfic~~EgLkak~a~LafDLkamideKEELimERDa~kcKa~RLn 201 (389)
T KOG4687|consen 148 ELQWRRDEANFICAHEGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLN 201 (389)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhh
Confidence 557999988888889999999999987777776665444333344555444443
No 190
>PRK15459 flagella synthesis chaperone protein FlgN; Provisional
Probab=46.56 E-value=1.7e+02 Score=24.18 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 114 KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
..|.+.+..|+..-+..+..+.+....+...=.+..++.+....++.+.-.||..||+|..+.-..
T Consensus 47 s~lLa~L~~le~~R~~~~~~~~~~~~~la~~Wq~i~~l~~~~r~lN~~NG~Ll~~hm~~N~qaL~~ 112 (140)
T PRK15459 47 SSLLATLDYLEQQRRKEQNTANSVNDDISQRWQEITEKTQQLRQLNQHNGWLLEGQIERNQQALEM 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543334444333334444446667777788888889999999999999987743
No 191
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.14 E-value=1.6e+02 Score=24.01 Aligned_cols=17 Identities=24% Similarity=0.589 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLE 131 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le 131 (205)
....++..+.+..+.+.
T Consensus 127 ~~~~~l~~l~~~~~~~~ 143 (191)
T PF04156_consen 127 SVEERLDSLDESIKELE 143 (191)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444333333
No 192
>KOG2856|consensus
Probab=46.03 E-value=2.1e+02 Score=28.02 Aligned_cols=101 Identities=18% Similarity=0.351 Sum_probs=68.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------
Q psy2152 75 ELLREDNEQLVTQYEREKQLRKAAD--QKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK----------------- 135 (205)
Q Consensus 75 e~Lred~e~Lv~q~ErEK~lRk~~E--eel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k----------------- 135 (205)
-++-+++++ |.-++++---+.-.. ++.-++||.|+.--|=-...+..++...+.....||
T Consensus 95 ~L~nd~~e~-iktwqK~a~H~~vm~G~KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsS 173 (472)
T KOG2856|consen 95 NLINDDVEK-IKTWQKEAYHKQVMGGFKETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSS 173 (472)
T ss_pred HHhhhHHHH-HHHHHhhhhHHHHhcchhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcc
Confidence 445555555 455655533222222 477788999888877777777777776655544442
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHh
Q psy2152 136 NASDHVYRLEEKEQELKKEYSILHERYTELLKT-------HMEYIERT 176 (205)
Q Consensus 136 n~~dq~~rleErE~elkkE~~~Lh~r~~elir~-------~~e~~er~ 176 (205)
-..||+..|.+|..-.|.+.++-...|.+-|.. ||+-|+.+
T Consensus 174 vspeq~kKlqdrveK~k~evqktkekYektl~el~~yt~~YmE~Meqv 221 (472)
T KOG2856|consen 174 VSPEQLKKLQDRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQV 221 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 123677889999999999999999988887754 77777654
No 193
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=45.81 E-value=3.6e+02 Score=27.82 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy2152 143 RLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 143 rleErE~elkkE~~~Lh~r~~e 164 (205)
.+.+-|++|++|+..+......
T Consensus 629 ~LS~AEr~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 629 VLSEAEREFKKELERMKDQLQD 650 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3667789999999888887544
No 194
>KOG0971|consensus
Probab=45.72 E-value=4.4e+02 Score=28.85 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHH
Q psy2152 52 LVVNVLESLDLAFTENQEHEVELELLREDNEQL 84 (205)
Q Consensus 52 ~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~L 84 (205)
-+|++=-+.....-..+...-+++..+-+++.|
T Consensus 383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL 415 (1243)
T KOG0971|consen 383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEEL 415 (1243)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444444433334444445555555554444
No 195
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=45.18 E-value=1.4e+02 Score=22.88 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=10.4
Q ss_pred hhHHHHHHHHhhHHHHH
Q psy2152 70 HEVELELLREDNEQLVT 86 (205)
Q Consensus 70 ~~~Ele~Lred~e~Lv~ 86 (205)
..-|+++|+++|..|-.
T Consensus 23 LqmEieELKekn~~L~~ 39 (79)
T PRK15422 23 LQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777666633
No 196
>KOG0804|consensus
Probab=45.07 E-value=3.3e+02 Score=27.18 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 125 SIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 125 ~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
+.|+.|-.-...+.+++..+++++.+....+..--+-..+-+|.-|=|++....+
T Consensus 403 E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 403 EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 4444444334445566666777777766665555555555566666666655555
No 197
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=44.99 E-value=3.2e+02 Score=27.03 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHH-HHHhhhcchhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKI-----ESLESIVR-MLELKSKNASDHVYRLEEKEQELK----KEYSILHERYTELLKTHM 170 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v-----~~Le~~~r-~Le~k~kn~~dq~~rleErE~elk----kE~~~Lh~r~~elir~~~ 170 (205)
.+.+.++.+..+-+.|-.+| .++.+.|+ .|...++...+++.+++.+-.++- +++..|......|...+.
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~ 182 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNA 182 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554433 23333333 345555666666655554444333 345555555555554444
Q ss_pred HHHH
Q psy2152 171 EYIE 174 (205)
Q Consensus 171 e~~e 174 (205)
....
T Consensus 183 ~i~~ 186 (475)
T PRK10361 183 QMAQ 186 (475)
T ss_pred HHHH
Confidence 3333
No 198
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=44.90 E-value=19 Score=22.04 Aligned_cols=19 Identities=16% Similarity=0.455 Sum_probs=15.1
Q ss_pred HHHHHHHHhhChhHHhhHH
Q psy2152 32 QEFEKMITKYDEDVVKDLM 50 (205)
Q Consensus 32 ~EfE~lI~~yG~d~V~~Lm 50 (205)
++...+++.||+..+..|+
T Consensus 2 ~~C~~~V~~y~~~ii~~l~ 20 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLE 20 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 4678899999998877665
No 199
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=44.57 E-value=3.1e+02 Score=26.68 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2152 148 EQELKKEYSILHERYTELLK 167 (205)
Q Consensus 148 E~elkkE~~~Lh~r~~elir 167 (205)
|.++..-|.++..--.++.+
T Consensus 336 e~e~~l~~~el~~~~ee~~~ 355 (511)
T PF09787_consen 336 EAELRLYYQELYHYREELSR 355 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666544444433
No 200
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=44.37 E-value=4.2e+02 Score=28.21 Aligned_cols=119 Identities=21% Similarity=0.266 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 26 LAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVE----LELLREDNEQLVTQYEREKQLRKAADQK 101 (205)
Q Consensus 26 lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~E----le~Lred~e~Lv~q~ErEK~lRk~~Eee 101 (205)
.+.-+..|+..|+...|..-|.+||--|=...-+|=+.... -.-.+| +.-||-+|-||-.|| |
T Consensus 338 t~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~-tniq~EIALA~QplrsENaqLrRrL------r------ 404 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGS-TNIQVEIALAMQPLRSENAQLRRRL------R------ 404 (861)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhcc-ccchhhhHhhhhhhhhhhHHHHHHH------H------
Confidence 45668889999999999888888888877777777655432 222333 466888877763332 2
Q ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKK--------ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 102 l~~~ED~~~~E~k--------eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
.+..+++..-+ +-.-.+.+|++-|-.|+.+++.......-|.-+-.+|-|....+.
T Consensus 405 --ilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 405 --ILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred --HHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 12222222111 112235566666666666665555445555555555555444333
No 201
>PLN02678 seryl-tRNA synthetase
Probab=44.34 E-value=2.3e+02 Score=27.58 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKN---ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn---~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
+++.+..+++.|..+-+.+...++. ..+....+-++-++|+.+...|-....++-....+.+-+.-.+-...+|-
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~ 118 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPV 118 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3444555556666555555443321 11233445566677888888888877777777777776666655555554
No 202
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=44.26 E-value=3.5e+02 Score=27.30 Aligned_cols=13 Identities=8% Similarity=0.537 Sum_probs=6.4
Q ss_pred HHHHHHHHhhChh
Q psy2152 32 QEFEKMITKYDED 44 (205)
Q Consensus 32 ~EfE~lI~~yG~d 44 (205)
..+-.++..||.+
T Consensus 275 ~dl~~~l~~~~~~ 287 (594)
T PF05667_consen 275 DDLADVLHKFSGE 287 (594)
T ss_pred hHHHHHHHhcccc
Confidence 3444455555544
No 203
>KOG0241|consensus
Probab=43.73 E-value=1.1e+02 Score=33.73 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=31.8
Q ss_pred HHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 74 LELLREDNEQLVTQYER-EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVR 128 (205)
Q Consensus 74 le~Lred~e~Lv~q~Er-EK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r 128 (205)
+.+||++.+.|.+|++. |...-...++++.+.|.-..+-+.+...++..+++.+.
T Consensus 366 irElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~ 421 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQ 421 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 45677777777777766 33322445556666665555555555555555555544
No 204
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=43.71 E-value=1.7e+02 Score=23.49 Aligned_cols=39 Identities=5% Similarity=0.226 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhhHHHhhhh----hhhhHHHHHHHHhhHHHHH
Q psy2152 48 DLMPLVVNVLESLDLAFTEN----QEHEVELELLREDNEQLVT 86 (205)
Q Consensus 48 ~LmP~VV~vLE~Le~~~~~n----~~~~~Ele~Lred~e~Lv~ 86 (205)
-|.|+|.++|+.=....... .....+++.++.+.+..+.
T Consensus 27 fl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~ 69 (141)
T PRK08476 27 WLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILK 69 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888887655554433 2233334444444444333
No 205
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=43.54 E-value=1.2e+02 Score=21.72 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 118 SKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 118 ~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
.+|++|..++..|..|+-....-+.-+----...|.|-.+-++|.....++|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 3566666666666666665555555555555667778888888888877776
No 206
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.33 E-value=41 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
.+..++..++++++.++..|....+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544443
No 207
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=43.30 E-value=2.9e+02 Score=26.01 Aligned_cols=74 Identities=18% Similarity=0.188 Sum_probs=41.7
Q ss_pred HHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2152 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED----ALEDDKKELNSKIESLESIVR 128 (205)
Q Consensus 55 ~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED----~~~~E~keL~~~v~~Le~~~r 128 (205)
+.|.....+...+.....+-+.|+.+..+++.|||+=-..+..+|..|..--- .=..-++.|+..+..++...+
T Consensus 134 ~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~~~ 211 (342)
T PF06632_consen 134 WCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKEEEK 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcccc
Confidence 44455555555566666666777888888888887755555555543333222 223334455555555554433
No 208
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.07 E-value=1.7e+02 Score=23.68 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=23.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 74 LELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKEL 116 (205)
Q Consensus 74 le~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL 116 (205)
++.|+++.......|+++...-+..++.+...+..|+.+.+.+
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4467776666655666655544444444444444444444443
No 209
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.87 E-value=2.6e+02 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhChhH
Q psy2152 29 SIYQEFEKMITKYDEDV 45 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~ 45 (205)
.+.++||.-|..-.|..
T Consensus 89 ~~~~~~E~~~~~~nPpL 105 (325)
T PF08317_consen 89 QIFEEIEEETYESNPPL 105 (325)
T ss_pred HHHHHHHHHHhhcCCHH
Confidence 34444444444333333
No 210
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=42.78 E-value=2.6e+02 Score=27.99 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh
Q psy2152 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYR 143 (205)
Q Consensus 91 EK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~r 143 (205)
-|.+|..-|+++...=..+-.+-..+..++..+++....+...+....+++..
T Consensus 18 Rr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~ 70 (618)
T PF06419_consen 18 RRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSA 70 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666665555555444433
No 211
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.58 E-value=1.7e+02 Score=24.32 Aligned_cols=15 Identities=33% Similarity=0.643 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHH
Q psy2152 141 VYRLEEKEQELKKEY 155 (205)
Q Consensus 141 ~~rleErE~elkkE~ 155 (205)
+..+..|-..+.+||
T Consensus 177 ~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 177 IEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334444444444444
No 212
>KOG2077|consensus
Probab=42.30 E-value=4.2e+02 Score=27.61 Aligned_cols=102 Identities=19% Similarity=0.251 Sum_probs=52.1
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-chhhhhhhhH-
Q psy2152 68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK-NASDHVYRLE- 145 (205)
Q Consensus 68 ~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k-n~~dq~~rle- 145 (205)
...-..+++|.-+++=|-..++.-|+..-+.|+++-++|..++.-+.++...- +..+-.-+.++- ..-....|.|
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar---~~~~~~e~ddiPmAqRkRFTRvEM 401 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDAR---QKAKDDEDDDIPMAQRKRFTRVEM 401 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhcccccccccHHHHhhhHHHHH
Confidence 35566777788887777676777666665555555555554444333332210 000000000000 0000122333
Q ss_pred ----HHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q psy2152 146 ----EKEQELKKEYSILHE--RYTELLKTHMEY 172 (205)
Q Consensus 146 ----ErE~elkkE~~~Lh~--r~~elir~~~e~ 172 (205)
....+-|-.+-.|.+ |+|+|||.-.++
T Consensus 402 aRVLMeRNqYKErLMELqEavrWTEMiRAsre~ 434 (832)
T KOG2077|consen 402 ARVLMERNQYKERLMELQEAVRWTEMIRASREN 434 (832)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcC
Confidence 334556667777776 899999986554
No 213
>KOG0964|consensus
Probab=42.28 E-value=5.1e+02 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.189 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhh
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFT 65 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~ 65 (205)
.|+++++.-+.+-=-....=.--++..|+-||...+
T Consensus 212 ~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 212 KYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 466666665554444444444555666666665544
No 214
>KOG1899|consensus
Probab=42.15 E-value=3e+02 Score=28.87 Aligned_cols=34 Identities=24% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152 117 NSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e 150 (205)
+.++..+..+--+.+.|.|+..+.+..|.|+-++
T Consensus 216 ~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~e 249 (861)
T KOG1899|consen 216 QSKVGEVVQERLQYETKLKSTKGEMAPLREQRSE 249 (861)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHhh
Confidence 5667777777777788888777776665544433
No 215
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=41.97 E-value=2.8e+02 Score=25.43 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 118 SKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 118 ~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
.+...|+.+....+.++.....-++.|.....-|+.....+......++
T Consensus 263 ~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~~~~~l~ 311 (344)
T PF12777_consen 263 KEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEEQLKNLV 311 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHHHhcccH
Confidence 3344455555555555555555555555555556655555555554443
No 216
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.80 E-value=1.1e+02 Score=21.96 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhhcch
Q psy2152 119 KIESLESIVRMLELKSKNA 137 (205)
Q Consensus 119 ~v~~Le~~~r~Le~k~kn~ 137 (205)
+|+.|+..++.|..++++.
T Consensus 33 ~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 33 QIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444433
No 217
>PRK10698 phage shock protein PspA; Provisional
Probab=41.79 E-value=2.4e+02 Score=24.59 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
++....++..|+.+.......+..+.+++.+|+.+-.+++...+.|.-|
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333333333444444444444444444333
No 218
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=41.34 E-value=2.3e+02 Score=24.41 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHh
Q psy2152 28 GSIYQEFEKMITK 40 (205)
Q Consensus 28 ~~Ig~EfE~lI~~ 40 (205)
..+.+||+|+-..
T Consensus 63 ~~l~~E~~R~~~~ 75 (221)
T PF05700_consen 63 PLLQAELERVASG 75 (221)
T ss_pred hhHHHHHHHHHcC
Confidence 6688999999877
No 219
>PLN02678 seryl-tRNA synthetase
Probab=41.12 E-value=2.6e+02 Score=27.14 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 57 LE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
++.+=.+..+..+...+++.|+.+..++..+.-.-|...... .++.+-=..+..+.+.|..++..++++...+-+.+-|
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~-~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDA-TELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344444455566677888889998888776663311111111 1222223345667777777777777777777677666
Q ss_pred hh
Q psy2152 137 AS 138 (205)
Q Consensus 137 ~~ 138 (205)
..
T Consensus 111 i~ 112 (448)
T PLN02678 111 LV 112 (448)
T ss_pred CC
Confidence 55
No 220
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=40.84 E-value=2.9e+02 Score=25.41 Aligned_cols=25 Identities=8% Similarity=0.190 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 147 KEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 147 rE~elkkE~~~Lh~r~~elir~~~e 171 (205)
+-..|++++..-.+-|+.++..+-+
T Consensus 343 ~~~~L~r~~~~~~~~y~~ll~r~~e 367 (444)
T TIGR03017 343 EMSVLQRDVENAQRAYDAAMQRYTQ 367 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666555533
No 221
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=40.80 E-value=56 Score=30.32 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e 171 (205)
.....+++..++..|+-.|-.|..|+..-..--..+=+.+++++.+++.+.+|.++|=-.--+
T Consensus 215 VldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~ 277 (311)
T PF04642_consen 215 VLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAE 277 (311)
T ss_pred HHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 456778899999999998888888885555555556688999999999999998887655433
No 222
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.75 E-value=3.1e+02 Score=25.67 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=43.3
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH
Q psy2152 70 HEVELELLREDNEQLVTQYEREKQLRKAADQ-KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE 148 (205)
Q Consensus 70 ~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Ee-el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE 148 (205)
....+..|.++|.+|.....+=+..-..+|+ +-..+.| |-.+-.+...+|..|..+.-.-..-+..+..+|.+|--+.
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~d-cv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Llsqi 243 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLD-CVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQI 243 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHH-HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666663322221111112221 1112333 4455556666677776665444444444555566666666
Q ss_pred HHHHHHHHHHHH
Q psy2152 149 QELKKEYSILHE 160 (205)
Q Consensus 149 ~elkkE~~~Lh~ 160 (205)
.++.+.++.+.-
T Consensus 244 vdlQ~r~k~~~~ 255 (306)
T PF04849_consen 244 VDLQQRCKQLAA 255 (306)
T ss_pred HHHHHHHHHHhh
Confidence 666665554443
No 223
>KOG0994|consensus
Probab=40.42 E-value=5.9e+02 Score=28.82 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKM 37 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~l 37 (205)
+-+++|++.|-.=+.+|
T Consensus 1511 eqi~~L~~~I~e~v~sL 1527 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASL 1527 (1758)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45667777776544443
No 224
>PLN02320 seryl-tRNA synthetase
Probab=40.36 E-value=2e+02 Score=28.55 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=47.7
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 57 LE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
++.+-.+.........+++.|+.+...+..++-. |...... +++.+-=..+..+.++|..++..++++...+-+.+-|
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~-~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN 169 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSER-QALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPN 169 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444455556666788888888888887766643 2111111 1232223345556666666666666666666667766
Q ss_pred hhhh
Q psy2152 137 ASDH 140 (205)
Q Consensus 137 ~~dq 140 (205)
..+-
T Consensus 170 ~~h~ 173 (502)
T PLN02320 170 MTHP 173 (502)
T ss_pred CCCc
Confidence 6543
No 225
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=39.88 E-value=3.3e+02 Score=25.64 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=15.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy2152 73 ELELLREDNEQLVTQYEREKQ 93 (205)
Q Consensus 73 Ele~Lred~e~Lv~q~ErEK~ 93 (205)
.|..|+.+++.|+-.||+|-.
T Consensus 85 kl~~l~keKe~L~~~~e~EEE 105 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYEQEEE 105 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888643
No 226
>KOG3096|consensus
Probab=39.82 E-value=2.8e+02 Score=24.93 Aligned_cols=81 Identities=27% Similarity=0.325 Sum_probs=48.9
Q ss_pred HHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy2152 33 EFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD----QKLFQIEDA 108 (205)
Q Consensus 33 EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~E----eel~~~ED~ 108 (205)
+==-|.+.||+++.+.- +|.|+.+...-+. ++..+++. |.-.-++ ||.++ .++-++|..
T Consensus 116 ~NLeLM~k~g~eaw~~~-------ne~le~~l~~aqk---elq~~kk~----iq~vn~~---RK~~Q~~ag~rL~~le~~ 178 (225)
T KOG3096|consen 116 ENLELMSKHGEEAWKQY-------NEVLEVMLTHAQK---ELQKTKKL----IQDVNRQ---RKHAQLTAGERLRELEQK 178 (225)
T ss_pred hhHHHHHHhhHHHHHHH-------HHHHHHHHHHHHH---HHHHHHHH----HHHHhHH---HHHHHHHHHHHHHHHHHH
Confidence 33346788999987754 4555555544443 23333433 3333343 45555 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
|.+ |-++-=+.+..+.+|++.+
T Consensus 179 wvq----Lv~knyeie~a~~~le~~i 200 (225)
T KOG3096|consen 179 WVQ----LVSKNYEIEVACVQLETQI 200 (225)
T ss_pred HHH----HHHhhHHHHHHHHHHHHHH
Confidence 986 5555666677777777654
No 227
>KOG4657|consensus
Probab=39.72 E-value=3e+02 Score=25.14 Aligned_cols=101 Identities=18% Similarity=0.199 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLF 103 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~ 103 (205)
|++..+=-..+-..||.|=.+.-..+|--.+.-|+-| . .-.+|.+.|.++ +.+++.|+..+-..-.+=.
T Consensus 17 ~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~l---S----~~~~e~e~l~~~----l~etene~~~~neL~~ek~ 85 (246)
T KOG4657|consen 17 GDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARAL---S----QSQVELENLKAD----LRETENELVKVNELKTEKE 85 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 5555555577888999998888888888887776622 2 224556667777 6777777766533333223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 104 QIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 104 ~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
..---.+++++++++.++-|...+-.|.....
T Consensus 86 ~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~d 117 (246)
T KOG4657|consen 86 ARQMGIEQEIKATQSELEVLRRNLQLLKEEKD 117 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334677888888888877766655555444
No 228
>KOG3859|consensus
Probab=39.60 E-value=2.2e+02 Score=27.29 Aligned_cols=57 Identities=32% Similarity=0.514 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e 171 (205)
-..++.-+++.......-+++.|+. -+.|+-+.|++||.--..||.++..+=+.|-+
T Consensus 321 qet~eaKr~e~~~e~qrkEee~rqm---------FvqrvkekE~elke~Ekel~~kf~~lkr~h~e 377 (406)
T KOG3859|consen 321 QETYEAKRNEFLGELQRKEEEMRQM---------FVQRVKEKEAELKEAEKELHEKFDRLKRLHQE 377 (406)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777754 34677888888888888888888888877744
No 229
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.50 E-value=1.6e+02 Score=22.09 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=19.1
Q ss_pred hhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 132 LKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 132 ~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
.|.+-+.+++..+..++..+..+-+.|+.+.
T Consensus 68 rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 68 RKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666666543
No 230
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=39.46 E-value=2.1e+02 Score=23.24 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
.|+|+++-+=.+| ..=-..||++=.|||++|.++++..+
T Consensus 32 aykeIqkYlw~~g-~t~~~~~~Il~~iLelfE~aaadgk~ 70 (111)
T COG4817 32 AYKEIQKYLWKSG-PTGWNEMKILGNILELFEEAAADGKE 70 (111)
T ss_pred HHHHHHHHHHHcC-cchhHHHHHHHHHHHHHHHHHhcccc
Confidence 4899999999999 55667899999999999999998765
No 231
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.07 E-value=2e+02 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy2152 113 KKELNSKIESLESIVRMLEL 132 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~ 132 (205)
.+++...++.+...|+.|..
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe 48 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAE 48 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554443
No 232
>PRK06798 fliD flagellar capping protein; Validated
Probab=38.96 E-value=3.6e+02 Score=25.91 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=59.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2152 18 VMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKA 97 (205)
Q Consensus 18 ~mse~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~ 97 (205)
.++=|-..+-..|-.-++.+..-|+.+ .|++- ++=..|+.+....--......-|... +.+-...+.+
T Consensus 330 ~L~lD~~kL~~al~~np~~V~~lF~g~--~Gia~---~l~~~l~~~~~~~G~i~~r~~~l~~~-------i~~l~~~~~~ 397 (440)
T PRK06798 330 TMKVDEEALKKALKENPDAAKQFFFGI--NGLGK---EMEKSLDKIFGDEGIIGERSKSIDNR-------VSKLDLKITD 397 (440)
T ss_pred CEEEcHHHHHHHHHHCHHHHHHHhcCC--CcHHH---HHHHHHHhhhCCCceeehhhhHHHHH-------HHHHHHHHHH
Confidence 444344456666666666666666322 23333 33344555554333333333333333 2222223466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 98 ADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 98 ~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
.+.++...|+.+...--.|...+.+|++....|...
T Consensus 398 ~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 398 IDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888999999988877655443
No 233
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=38.72 E-value=2.2e+02 Score=28.75 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhhh
Q psy2152 163 TELLKTHMEYIERTKLM 179 (205)
Q Consensus 163 ~elir~~~e~~er~k~~ 179 (205)
++-+..-++|+=+....
T Consensus 416 ~dW~laEae~Ll~lA~q 432 (656)
T PRK06975 416 DDWMIAEVEQMLSSASQ 432 (656)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 45555567777666543
No 234
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=38.48 E-value=2.2e+02 Score=23.24 Aligned_cols=57 Identities=30% Similarity=0.352 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchh-------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNAS-------DHVYRLEEKEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~-------dq~~rleErE~elkkE~~~Lh~r~~elir~~~e 171 (205)
.|..+|..|+.+.-..+.+++-.. -..+.++.+-..|..+...+-.||.++-..|-+
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455555555555444444443333 234456666677777777777788777777643
No 235
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=38.12 E-value=1.2e+02 Score=29.98 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 111 DDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
...++++.+|+.|+++++.|..++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666555544
No 236
>KOG4809|consensus
Probab=37.44 E-value=1.5e+02 Score=30.30 Aligned_cols=36 Identities=17% Similarity=0.331 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHV 141 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~ 141 (205)
=++++.|.++|..+|..|+.+...-+...+.|..|.
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkeha 368 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHA 368 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999987665554444444443
No 237
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=37.30 E-value=33 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
=.=+|..++++|+.+++.|..+.+.|.++
T Consensus 72 lvl~LLd~i~~Lr~el~~L~~~l~~~~~~ 100 (101)
T PRK10265 72 VALTLLDEIAHLKQENRLLRQRLSRFVAH 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44578999999999999998887766554
No 238
>PLN02320 seryl-tRNA synthetase
Probab=36.86 E-value=3.7e+02 Score=26.76 Aligned_cols=75 Identities=17% Similarity=0.121 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKN--ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn--~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
+.+.+..+++.|+.+-+.+..+++. ..+....+-++-.++|.++..|.....++-....+.+-+.-.+-...+|-
T Consensus 101 ~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~ 177 (502)
T PLN02320 101 NMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPV 177 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3445666777777766666555533 11234556667778888888888888777777666776666655555554
No 239
>KOG2129|consensus
Probab=36.82 E-value=4.4e+02 Score=26.32 Aligned_cols=32 Identities=31% Similarity=0.455 Sum_probs=20.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Q psy2152 103 FQIEDALEDD----KKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 103 ~~~ED~~~~E----~keL~~~v~~Le~~~r~Le~k~ 134 (205)
.++|..+++| ..-|+.++++|+.+.|-|..|.
T Consensus 189 V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 189 VQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444 3456777888888888777665
No 240
>KOG4603|consensus
Probab=36.72 E-value=2.2e+02 Score=25.14 Aligned_cols=57 Identities=30% Similarity=0.363 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh--hhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNASDH--VYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq--~~rleErE~elkkE~~~Lh~r~~e 164 (205)
+++++...|..++.+|+..++-.+.-+|....- +.-+++..++|+++...-.+|...
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777766666655555544444 356788888999888776666543
No 241
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=36.66 E-value=1.5e+02 Score=20.84 Aligned_cols=56 Identities=30% Similarity=0.385 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcch--h-----hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNA--S-----DHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~--~-----dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
+..|+.-|..+++.++.....+..++.|. . +-+..-.++-.++..++..|......
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667778888888888888888877542 2 33455556666677777666655443
No 242
>KOG0709|consensus
Probab=36.42 E-value=96 Score=30.67 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhh
Q psy2152 95 RKAADQKLFQIEDA---LEDDKKELNSKIESLESIVRMLELKSKNASDHV 141 (205)
Q Consensus 95 Rk~~Eeel~~~ED~---~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~ 141 (205)
|++-.+.+..+|+- +-.+.++|+.+|.+|+..|+.|-.+++-+...+
T Consensus 267 RrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 267 RRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 56666677888875 557889999999999999999987776555444
No 243
>KOG0946|consensus
Probab=36.16 E-value=4.3e+02 Score=28.41 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh-hhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNASDHVY-RLEEKEQE--LKKEYSILHERYTELLKTHMEYI 173 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~-rleErE~e--lkkE~~~Lh~r~~elir~~~e~~ 173 (205)
.+..+.++..+...+|..++.-|...+++..++.. -++.+++- ...+++++.-.+.++++....+.
T Consensus 689 eL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e~~~t~~eel~a~~~e~k~l~~~q~~l~ 757 (970)
T KOG0946|consen 689 ELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAEASKTQNEELNAALSENKKLENDQELLT 757 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555555444432 23333332 23366677777777776554443
No 244
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=35.60 E-value=3.3e+02 Score=25.94 Aligned_cols=75 Identities=24% Similarity=0.324 Sum_probs=37.3
Q ss_pred HhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 63 AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 63 ~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
+..+..+...+++.|+.+...+..+.-.-+......+ .+..-=.....+.+++..++..++++...+-+++-|..
T Consensus 33 ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 33 LDEERRELQTELEELQAERNALSKEIGQAKRKGEDAE-ALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4445555667777777777666555532111110111 12111133455555555556666666555555665554
No 245
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=35.21 E-value=1.3e+02 Score=26.85 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 111 DDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
+++..|+..|++|+.+|-+|=-|+
T Consensus 107 ~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 107 QTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777888888887775554
No 246
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=35.15 E-value=3.2e+02 Score=24.17 Aligned_cols=106 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-------
Q psy2152 74 LELLREDNEQLVTQYEREKQLRKA-------ADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASD------- 139 (205)
Q Consensus 74 le~Lred~e~Lv~q~ErEK~lRk~-------~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~d------- 139 (205)
-++|+--.+.||.++.+.-..+.. .=+++..-=...-.|++.|..-...|+++|+.|...|--..|
T Consensus 11 eell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrk 90 (195)
T PF10226_consen 11 EELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRK 90 (195)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHH
Confidence 356666677777777766555311 111222222334567888999999999999998665533322
Q ss_pred ---h--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 140 ---H--------VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 140 ---q--------~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
. ++-+...-+.-.+++..|..|..++|+.+.++=+-.=++
T Consensus 91 larEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 91 LAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 0 111333344555688899999999999998765544433
No 247
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=35.05 E-value=5.6e+02 Score=26.93 Aligned_cols=106 Identities=20% Similarity=0.307 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q psy2152 69 EHEVELELLREDNEQLVTQYEREKQL--RK--AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRL 144 (205)
Q Consensus 69 ~~~~Ele~Lred~e~Lv~q~ErEK~l--Rk--~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl 144 (205)
....|+..|++++++|..++..=-.+ .+ .+-++.+.==+.+....+.|...+..-++....+...+...-....-.
T Consensus 475 dL~~ELqqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes 554 (739)
T PF07111_consen 475 DLSLELQQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQES 554 (739)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 145 EEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
.+.-..+..++....+.|..-+..-+.-++
T Consensus 555 ~eea~~lR~EL~~QQ~~y~~alqekvsevE 584 (739)
T PF07111_consen 555 TEEAAELRRELTQQQEVYERALQEKVSEVE 584 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 248
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.95 E-value=5.4e+02 Score=26.71 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVV 46 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V 46 (205)
+.++..++.+.++++..|..+....-
T Consensus 170 e~~~~~l~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 170 EKLSELLKEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888877665544
No 249
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=34.91 E-value=3.2e+02 Score=24.11 Aligned_cols=98 Identities=16% Similarity=0.347 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----hhhh----hhhhHHHH----
Q psy2152 82 EQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN-----ASDH----VYRLEEKE---- 148 (205)
Q Consensus 82 e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn-----~~dq----~~rleErE---- 148 (205)
..||..|+..=...+ +.+-.++..+..|.|....-+++.+++.+.+..|++. +.+. +.-+..+.
T Consensus 93 ~~li~pLe~k~e~d~---k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele 169 (223)
T cd07605 93 GELILPLEKKLELDQ---KVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELE 169 (223)
T ss_pred HHHHHHhhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHH
Confidence 456777666433322 3667778888889998888999999999999988874 3222 22222222
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q psy2152 149 -----------QELKKEYSILHERYTELLKTHMEYIERTKLMMGS 182 (205)
Q Consensus 149 -----------~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~ 182 (205)
.+-++-|--|.++|-.++...+.|..+.+.+-.+
T Consensus 170 ~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~ 214 (223)
T cd07605 170 AFVSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLST 214 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334466777777777888778877776655443
No 250
>PF13166 AAA_13: AAA domain
Probab=34.89 E-value=4.5e+02 Score=25.83 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
...|......+...+..+..+...+..++....+.+..+......++++.+.|...
T Consensus 398 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 398 DKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556566665555555555555555555555555555555555555543
No 251
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.18 E-value=1.5e+02 Score=30.15 Aligned_cols=21 Identities=14% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHHHhhChhHHhhHHHHH
Q psy2152 33 EFEKMITKYDEDVVKDLMPLV 53 (205)
Q Consensus 33 EfE~lI~~yG~d~V~~LmP~V 53 (205)
.|.+|...-|.++-+-||-.|
T Consensus 26 ~lrrlC~G~~~~IWkfli~~V 46 (632)
T PF14817_consen 26 YLRRLCRGNMAPIWKFLIQHV 46 (632)
T ss_pred HHHHHhccCChHHHHHHHHHc
Confidence 467777777777777776554
No 252
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.11 E-value=1.4e+02 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
+..+.+.++.++.+|+.+.+.++.+++++.
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788888899999898888888665
No 253
>KOG0810|consensus
Probab=33.91 E-value=3.8e+02 Score=24.73 Aligned_cols=104 Identities=25% Similarity=0.369 Sum_probs=58.8
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-----KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-----k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
.|+.|+.+.+.-...++.|..+.++| .++. =+.+- +...+++...=+.++.-.+.++.++..++.++-+.+..
T Consensus 34 ~l~~Ff~~ve~Ir~~i~~l~~~~~~l-~~~h-s~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~ 111 (297)
T KOG0810|consen 34 NLEEFFEDVEEIRDDIEKLDEDVEKL-QKLH-SKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQ 111 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh-hhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555555554444555555554443 2222 12221 33345677777888888889999999999998888763
Q ss_pred h--cchh----hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 134 S--KNAS----DHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 134 ~--kn~~----dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
. .+.+ .|.+-+.-+=.++..+|+.++..|.+
T Consensus 112 ~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~ 148 (297)
T KOG0810|consen 112 NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYRE 148 (297)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2222 23333444445555566666665554
No 254
>KOG4005|consensus
Probab=33.84 E-value=3.9e+02 Score=24.76 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
+..++|++ .+||...-+.|+.+|..|..+-++..
T Consensus 91 Rm~eme~~----i~dL~een~~L~~en~~Lr~~n~~L~ 124 (292)
T KOG4005|consen 91 RMEEMEYE----IKDLTEENEILQNENDSLRAINESLL 124 (292)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554 34555555555555555544444443
No 255
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.79 E-value=3.4e+02 Score=24.02 Aligned_cols=62 Identities=27% Similarity=0.323 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
|..--...+.++..|.......+.+...|..++..+...+.+|.+....--+|-..|+..-.
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333446667777777777777777777888887777787777766666666666665433
No 256
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=33.78 E-value=5.5e+02 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
+-..|-.|..|.+.+..++..|+....++..|..
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~ 663 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLD 663 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345777777777777777777776666655553
No 257
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=33.54 E-value=4.9e+02 Score=25.86 Aligned_cols=43 Identities=14% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 96 KAADQKLFQIEDA-------LEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 96 k~~Eeel~~~ED~-------~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
+.++.++..+++. |-.++..|..++..++.+.......++.++
T Consensus 240 e~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 240 EEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666663 445555666666666666555555554443
No 258
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=32.98 E-value=2.8e+02 Score=25.87 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 80 DNEQLVTQYEREKQLRKAADQKLFQIED 107 (205)
Q Consensus 80 d~e~Lv~q~ErEK~lRk~~Eeel~~~ED 107 (205)
+.+..+.+|+-|-..||+..+++.+++.
T Consensus 88 ~H~lml~RL~~EL~~Rk~L~~~~~el~~ 115 (355)
T PF09766_consen 88 EHQLMLARLEFELEQRKRLEEQLKELEQ 115 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455577888888888887776666543
No 259
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=32.68 E-value=85 Score=24.62 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhh------hhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRMLELKSKNASD------HVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~d------q~~rleErE~elkkE~~~Lh~r~~el 165 (205)
.++..+|++|+++.|.++.+.-.-.- -+.-++=-+.+|.+.+..+-.|+++-
T Consensus 5 s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~eieI~d~eL~~~FeeIa~RFrk~ 62 (92)
T PF07820_consen 5 SKIREEIEKLQEQLKQAETKEAERIGRIALKAGLGEIEISDAELQAAFEEIAARFRKG 62 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCHHHHHHHHHHHHHHHhcc
Confidence 45777888888888888776532111 12235566788899888888887653
No 260
>PRK04325 hypothetical protein; Provisional
Probab=32.51 E-value=2e+02 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 121 ~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
..++...-.|+.|+-=..+-|..|.+--.+..++...|...
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~q 45 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQ 45 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666555555555555555555555555433
No 261
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=31.83 E-value=15 Score=36.74 Aligned_cols=12 Identities=50% Similarity=0.902 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHH
Q psy2152 73 ELELLREDNEQL 84 (205)
Q Consensus 73 Ele~Lred~e~L 84 (205)
++..|+..|+.|
T Consensus 275 ei~~L~q~~~eL 286 (713)
T PF05622_consen 275 EIDELRQENEEL 286 (713)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 262
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.80 E-value=1.1e+02 Score=21.86 Aligned_cols=19 Identities=32% Similarity=0.400 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy2152 116 LNSKIESLESIVRMLELKS 134 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~ 134 (205)
++.++++++.++..|....
T Consensus 36 ~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 36 LQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 263
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=31.79 E-value=5.4e+02 Score=25.74 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVR 128 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r 128 (205)
+.-+.|-.|-.=+.+|..-++.-.....
T Consensus 285 ~wtE~ES~WIsLteeLR~dle~~r~~ae 312 (488)
T PF06548_consen 285 RWTEAESKWISLTEELRVDLESSRSLAE 312 (488)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4556666677666666666555444333
No 264
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=31.73 E-value=3.5e+02 Score=23.60 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVL 57 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vL 57 (205)
..+-....+|||.-|...=..++.++|.-+.+-+
T Consensus 127 ~~~~~~~~~e~e~~~e~lv~~s~g~i~~~l~~~m 160 (229)
T PF11101_consen 127 SQLDEFFDQEFEQAIEQLVQESMGSILQALGNEM 160 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366777788888887777777777776666544
No 265
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=31.67 E-value=2.9e+02 Score=24.51 Aligned_cols=51 Identities=22% Similarity=0.159 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 85 VTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 85 v~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
++++||--..+.+..-++..==+...+|...|..+|+.++-++.++..+-+
T Consensus 42 ~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 42 VTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455555544444444444444445555566666666665555555544433
No 266
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=31.55 E-value=2.9e+02 Score=22.52 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHH
Q psy2152 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKE 154 (205)
Q Consensus 121 ~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE 154 (205)
+.|+...-.|+++++-+..|..++++|-.+|+.+
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~ 106 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSE 106 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 267
>PF13166 AAA_13: AAA domain
Probab=31.54 E-value=5.1e+02 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=13.9
Q ss_pred hhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy2152 139 DHVYRLEEKEQELKKEY---SILHERYTELLKTH 169 (205)
Q Consensus 139 dq~~rleErE~elkkE~---~~Lh~r~~elir~~ 169 (205)
..+..+.....+++..+ ....++.++.++.+
T Consensus 438 ~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 438 EEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444444444433 33444555555544
No 268
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.53 E-value=1.5e+02 Score=20.81 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Q psy2152 101 KLFQIEDALEDDK-------KELNSKIESLESIVRMLELK 133 (205)
Q Consensus 101 el~~~ED~~~~E~-------keL~~~v~~Le~~~r~Le~k 133 (205)
++.++|-.|..+. ......|..|+.+|+.|..+
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~e 44 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAE 44 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3444555555443 34555666666666666443
No 269
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=31.46 E-value=3.2e+02 Score=23.05 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHh
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRED 80 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred 80 (205)
+.+++||....+|++++...- +-|+..+-.||.--+.|+.. .......|.....+
T Consensus 16 ~qIf~I~E~~R~E~~~l~~EL--~evk~~v~~~I~evD~Le~~---er~aR~rL~eVS~~ 70 (159)
T PF05384_consen 16 EQIFEIAEQARQEYERLRKEL--EEVKEEVSEVIEEVDKLEKR---ERQARQRLAEVSRN 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 568899999999999987754 23444444444444444433 33333344444444
No 270
>KOG1899|consensus
Probab=31.38 E-value=6.4e+02 Score=26.56 Aligned_cols=91 Identities=26% Similarity=0.274 Sum_probs=53.6
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRL 144 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl 144 (205)
..+..+...+..|..|+|-|+-|+--=-..=-..-+++..+|--++.-+..|-+.-+.||.+.- -...|
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqell-----------srtsL 172 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELL-----------SRTSL 172 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHH-----------hhhhH
Confidence 4567778888899999888876664311111112235666666666666555555555554311 01456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2152 145 EEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~eli 166 (205)
|-|.-+|+.|++.|.=+++-+=
T Consensus 173 ETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 173 ETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHHHhHHHHHHHHhHHHHHHHH
Confidence 6677777777777766666555
No 271
>PRK10869 recombination and repair protein; Provisional
Probab=31.20 E-value=5.2e+02 Score=25.45 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhC-h-hHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2152 20 SEKVQSLAGSIYQEFEKMITKYD-E-DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKA 97 (205)
Q Consensus 20 se~Vy~lA~~Ig~EfE~lI~~yG-~-d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~ 97 (205)
.++.+..++.++.-| +| . ..+-..+..+++.|+.|..+-..-......++.+....+.+...+..-...-.-
T Consensus 220 ~e~i~~~~~~~~~~L------~~~~~~~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~ 293 (553)
T PRK10869 220 SGQLLTTSQNALQLL------ADGEEVNILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDL 293 (553)
T ss_pred HHHHHHHHHHHHHHh------cCCCcccHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 98 ADQKLFQIEDALED----------DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 98 ~Eeel~~~ED~~~~----------E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
-.+++..+|+-+.. ...++....+.++.+...|...-. .+..|+.+...++++|..+-...++.=+
T Consensus 294 dp~~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~----~l~~Le~e~~~l~~~l~~~A~~LS~~R~ 369 (553)
T PRK10869 294 DPNRLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQED----DLETLALAVEKHHQQALETAQKLHQSRQ 369 (553)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHH
Q psy2152 168 THMEYIER 175 (205)
Q Consensus 168 ~~~e~~er 175 (205)
....-++.
T Consensus 370 ~aA~~l~~ 377 (553)
T PRK10869 370 RYAKELAQ 377 (553)
T ss_pred HHHHHHHH
No 272
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=31.19 E-value=2.5e+02 Score=21.71 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=28.5
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHH
Q psy2152 99 DQKLFQIEDAL-----EDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEK 147 (205)
Q Consensus 99 Eeel~~~ED~~-----~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleEr 147 (205)
+.++..+|... .++.-+|+..++.+..+.+.+..+.++...++..|-|.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555443 34556666666666666666666666665555555443
No 273
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=31.13 E-value=2.8e+02 Score=22.31 Aligned_cols=31 Identities=29% Similarity=0.230 Sum_probs=13.8
Q ss_pred HHHHhhHHHhhhhhhhhHH--HHHHHHhhHHHH
Q psy2152 55 NVLESLDLAFTENQEHEVE--LELLREDNEQLV 85 (205)
Q Consensus 55 ~vLE~Le~~~~~n~~~~~E--le~Lred~e~Lv 85 (205)
..|..||..-.+....... ...+..+..+|.
T Consensus 71 ALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~ 103 (139)
T PF13935_consen 71 ALLDELERAQQRIAELEQECENEDIALDVQKLR 103 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555544433333322 444555544443
No 274
>KOG3433|consensus
Probab=31.08 E-value=2.7e+02 Score=24.68 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=20.4
Q ss_pred HHHHHHhhChhHHhhHHHH----HHHHHHhhHHHhhhh
Q psy2152 34 FEKMITKYDEDVVKDLMPL----VVNVLESLDLAFTEN 67 (205)
Q Consensus 34 fE~lI~~yG~d~V~~LmP~----VV~vLE~Le~~~~~n 67 (205)
|..++|-||--.|..+=|+ +-.|=+.|-+++-.+
T Consensus 18 f~eskDff~LkelEKlG~kKgIv~~tvKdvLQsLvDD~ 55 (203)
T KOG3433|consen 18 FQESKDFFQLKELEKLGSKKGIVWQTVKDVLQSLVDDG 55 (203)
T ss_pred HHhhHhHHHHHHHHHhCCccceehhHHHHHHHHHhccc
Confidence 4456677777777776666 233456666665544
No 275
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.95 E-value=5.8e+02 Score=25.85 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2152 151 LKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 151 lkkE~~~Lh~r~~elir~~~ 170 (205)
|+++++...+-|+.++..+-
T Consensus 375 L~R~~~~~~~lY~~lL~r~~ 394 (726)
T PRK09841 375 LSRDVEAGRAVYLQLLNRQQ 394 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 276
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=30.94 E-value=4.6e+02 Score=24.69 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-hhhhhhhhHHHHHHHHH
Q psy2152 104 QIEDALEDDKKELNSKIESLESIVRMLELKSKN-ASDHVYRLEEKEQELKK 153 (205)
Q Consensus 104 ~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn-~~dq~~rleErE~elkk 153 (205)
.+|..=+.-+++|..++.+|..+.-.|+.++.. ..-+|.+|.-+...|.+
T Consensus 99 ~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~ 149 (310)
T PF09755_consen 99 KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEK 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 455555566778888888888877777766643 22334555544444443
No 277
>KOG0976|consensus
Probab=30.93 E-value=7.3e+02 Score=27.06 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152 88 YEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLE 145 (205)
Q Consensus 88 ~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rle 145 (205)
|+-+|+-|.++....++.=.....+...|..++..++.....-..|++++.|-..-||
T Consensus 300 Ld~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 300 LDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4566777788888888888888888899999999888888888888888887766655
No 278
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=30.93 E-value=4.5e+02 Score=24.95 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=43.3
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD---QKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 57 LE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~E---eel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
++.+-.+..+..+...+++.|+.+...+..+.-.-+ +..+ +++..-=.....+.++|..++..++++...+-+.
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~---~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK---GQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555566677788888888877766663211 1111 1222222334455556666666666666666666
Q ss_pred hcchhh
Q psy2152 134 SKNASD 139 (205)
Q Consensus 134 ~kn~~d 139 (205)
+-|..+
T Consensus 106 lPN~~~ 111 (418)
T TIGR00414 106 IPNIPH 111 (418)
T ss_pred CCCCCC
Confidence 666543
No 279
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.87 E-value=5.3e+02 Score=25.42 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 69 EHEVELELLREDNEQLVTQYEREKQLRKAADQKL 102 (205)
Q Consensus 69 ~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel 102 (205)
.....++.+.+..++|.+.+|+|-..|+..++.+
T Consensus 275 ~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~ 308 (560)
T PF06160_consen 275 EVEEENEEIEERIDQLYDILEKEVEAKKYVEKNL 308 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455667888888899999999998886655533
No 280
>PRK14127 cell division protein GpsB; Provisional
Probab=30.65 E-value=66 Score=25.65 Aligned_cols=48 Identities=25% Similarity=0.375 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHh
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRED 80 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred 80 (205)
..++|.+-...|.++-|...+-.|+.-+|.| ..++.+...++..|+..
T Consensus 12 ~~KeF~~~~RGYd~~EVD~FLd~V~~dye~l---~~e~~~Lk~e~~~l~~~ 59 (109)
T PRK14127 12 LEKEFKTSMRGYDQDEVDKFLDDVIKDYEAF---QKEIEELQQENARLKAQ 59 (109)
T ss_pred hhCccCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4578888889999999999999888766655 33444433333333333
No 281
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.44 E-value=1.4e+02 Score=23.19 Aligned_cols=15 Identities=20% Similarity=0.222 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy2152 146 EKEQELKKEYSILHE 160 (205)
Q Consensus 146 ErE~elkkE~~~Lh~ 160 (205)
.+...|+.+...|++
T Consensus 48 ~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 48 ARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHhhC
Confidence 333444444444443
No 282
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=30.33 E-value=3.4e+02 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=8.1
Q ss_pred HHHHH-HHHHHHHhhChhH
Q psy2152 28 GSIYQ-EFEKMITKYDEDV 45 (205)
Q Consensus 28 ~~Ig~-EfE~lI~~yG~d~ 45 (205)
..||. =|.-||++---++
T Consensus 61 ~~ly~~~F~ELIRQVTi~C 79 (189)
T PF10211_consen 61 EELYSQCFDELIRQVTIDC 79 (189)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 33444 3445555544433
No 283
>PF15456 Uds1: Up-regulated During Septation
Probab=30.19 E-value=3e+02 Score=22.26 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 144 LEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 144 leErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
+..+-.+|-.++-.+.+|.+++=+.-.+|+-
T Consensus 86 ~~rk~ee~~~eL~~le~R~~~~~~rLLeH~A 116 (124)
T PF15456_consen 86 SDRKCEELAQELWKLENRLAEVRQRLLEHTA 116 (124)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777776666566553
No 284
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=29.98 E-value=4.7e+02 Score=24.57 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhh---hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASD---HVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~d---q~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
+...+..++..|+.....+........+ +..+|+..-.-.++-|..+..|+.+.=
T Consensus 325 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 325 EIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443 345666555566678999999988753
No 285
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=29.73 E-value=5.1e+02 Score=24.87 Aligned_cols=99 Identities=9% Similarity=0.109 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHhhChh-HHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 24 QSLAGSIYQEFEKMITKYDED-VVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKL 102 (205)
Q Consensus 24 y~lA~~Ig~EfE~lI~~yG~d-~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel 102 (205)
..+...|-..++.+-.-|..+ ...|++ .++-..|+.+...+--......-|... +.+++.+ ....+.++
T Consensus 360 ~kl~~al~~np~~V~~lF~~~~~~~G~~---~~l~~~l~~~~~~~G~l~~~~~~l~~~----i~~l~~~---i~~~~~rl 429 (462)
T PRK08032 360 DKLTKALKEDPAGVKALFVGDGKKTGIT---TQIATNLKSWLSTTGIIKTATDGVNKT----LKKLTKQ---YNAVSDSI 429 (462)
T ss_pred HHHHHHHHHCHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHcCCccchhHHhHHHHH----HHHHHHH---HHHHHHHH
Confidence 345556666666666666432 223444 344444555544332211111222222 3333332 35566677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 103 FQIEDALEDDKKELNSKIESLESIVRMLEL 132 (205)
Q Consensus 103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~ 132 (205)
...|+.++..--.|...+.+++...--|..
T Consensus 430 ~~~e~rl~~qF~ame~~~s~mns~~s~L~~ 459 (462)
T PRK08032 430 DATIARYKAQFTQLDKLMTSLNSTSSYLTQ 459 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777776555543
No 286
>KOG1962|consensus
Probab=29.72 E-value=4.1e+02 Score=23.73 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
|....+.+.|...+++.+.....+..+..+..-|..++..-=..+..+|+.|.+..
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444555566665543
No 287
>KOG4571|consensus
Probab=29.71 E-value=2.9e+02 Score=25.85 Aligned_cols=14 Identities=21% Similarity=0.297 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q psy2152 23 VQSLAGSIYQEFEK 36 (205)
Q Consensus 23 Vy~lA~~Ig~EfE~ 36 (205)
++.+=..|-+||+.
T Consensus 164 ~s~~l~~i~~~C~~ 177 (294)
T KOG4571|consen 164 KSTILEEIVRECEH 177 (294)
T ss_pred hhHHHHHHHHHHHh
Confidence 46666666677763
No 288
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=29.60 E-value=4.1e+02 Score=23.70 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHHH
Q psy2152 144 LEEKEQELKKEYSIL 158 (205)
Q Consensus 144 leErE~elkkE~~~L 158 (205)
+......|.+|.+.|
T Consensus 282 ~~~~~~~l~~ei~~L 296 (297)
T PF02841_consen 282 FQEEAEKLQKEIQDL 296 (297)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 444444455555444
No 289
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.29 E-value=2.5e+02 Score=21.22 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q psy2152 72 VELELLREDNEQLVTQYER 90 (205)
Q Consensus 72 ~Ele~Lred~e~Lv~q~Er 90 (205)
.++..|+...+.|+.+.+.
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~ 41 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEE 41 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 290
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=29.08 E-value=7e+02 Score=26.22 Aligned_cols=123 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 30 IYQEFEKMITK--YDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED 107 (205)
Q Consensus 30 Ig~EfE~lI~~--yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED 107 (205)
+-.|+.+|-.. -......++-+ +=.+.+.+..+.+.+.....+++.|+.+.+.+-.++++-++.+..++..+..+=+
T Consensus 85 ~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 85 AQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---------HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 108 AL---------EDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 108 ~~---------~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
.+ ..+......++..++...-+|+....-+.-...-+-+ .+|.++.
T Consensus 164 ~L~~~g~~~~~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~~~~r~----------~l~~~~~ 218 (775)
T PF10174_consen 164 MLQSKGLSAEAEEEDNEALRRIREAEARIMRLESLLERKEKEHMEARE----------QLHRRLQ 218 (775)
T ss_pred HHhhcCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----------HHHHHhh
No 291
>KOG0994|consensus
Probab=28.97 E-value=9.1e+02 Score=27.51 Aligned_cols=50 Identities=26% Similarity=0.187 Sum_probs=27.5
Q ss_pred ChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHH
Q psy2152 42 DEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91 (205)
Q Consensus 42 G~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErE 91 (205)
-.+.|++-|--||..||.-+.+....+..-.....-...-+++|++.+.+
T Consensus 1557 ~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~ 1606 (1758)
T KOG0994|consen 1557 RAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE 1606 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35567777777888887777666554443333333333334445544443
No 292
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=28.90 E-value=5e+02 Score=24.51 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhccC
Q psy2152 142 YRLEEKEQELKKEYSILHERYTELLKTH---MEYIERTKLMMGS 182 (205)
Q Consensus 142 ~rleErE~elkkE~~~Lh~r~~elir~~---~e~~er~k~~~~~ 182 (205)
.....+-++.+.+|+.+....+++-+.+ .+-++++|.-+-.
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666666555555544 4556677765544
No 293
>PRK01156 chromosome segregation protein; Provisional
Probab=28.76 E-value=6.5e+02 Score=25.75 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHhhhc
Q psy2152 118 SKIESLESIVRMLELKSK 135 (205)
Q Consensus 118 ~~v~~Le~~~r~Le~k~k 135 (205)
..+..++.....+.....
T Consensus 305 ~~l~~l~~~l~~l~~~l~ 322 (895)
T PRK01156 305 NDIENKKQILSNIDAEIN 322 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 294
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=28.68 E-value=4.2e+02 Score=23.51 Aligned_cols=59 Identities=15% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q psy2152 52 LVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRK-------AADQKLFQIEDALEDDKKEL 116 (205)
Q Consensus 52 ~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk-------~~Eeel~~~ED~~~~E~keL 116 (205)
-+.++||.|.+++.-.... |...-++|-.+||.=...-. ..|.--..+-+.|+.|....
T Consensus 43 QF~sALe~f~sl~~~~ggd------Le~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y 108 (201)
T PF11172_consen 43 QFKSALEQFKSLVNFDGGD------LEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQY 108 (201)
T ss_pred HHHHHHHHHHHhhCCCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776654331 45555666666765433322 22233334445588776544
No 295
>KOG4661|consensus
Probab=28.63 E-value=2.5e+02 Score=29.24 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA 108 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~ 108 (205)
..+.++|+.+++ -.+|||||..|.+.|.+-..+|..
T Consensus 650 Rl~~erlrle~q--RQrLERErmErERLEreRM~ve~e 685 (940)
T KOG4661|consen 650 RLKAERLRLERQ--RQRLERERMERERLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444 345666666666666555555543
No 296
>KOG4797|consensus
Probab=28.59 E-value=92 Score=25.48 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
+++.+++|..++..|+.+|+-|...+.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 344455677777777777777655544
No 297
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.34 E-value=4.8e+02 Score=24.09 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=10.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 138 SDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 138 ~dq~~rleErE~elkkE~~~Lh~ 160 (205)
.+.+....++.+++..+.+.+..
T Consensus 238 ~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 238 ESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555554444
No 298
>KOG0933|consensus
Probab=28.30 E-value=8.5e+02 Score=26.95 Aligned_cols=57 Identities=33% Similarity=0.336 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKK---EYSILHERYTELLKTHMEY 172 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk---E~~~Lh~r~~elir~~~e~ 172 (205)
+..+.+.|+.+...++.-.+|..+.-..|.+++..+.+ .|..+.+.+.+.=..|-.+
T Consensus 317 l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~ 376 (1174)
T KOG0933|consen 317 LNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKA 376 (1174)
T ss_pred HHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555556666666667777777776 6666766666555444433
No 299
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=28.29 E-value=5.8e+02 Score=25.07 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhC
Q psy2152 25 SLAGSIYQEFEKMITKYD 42 (205)
Q Consensus 25 ~lA~~Ig~EfE~lI~~yG 42 (205)
.-...+..|++++-..|+
T Consensus 324 e~~~~l~~Ei~~l~~sY~ 341 (569)
T PRK04778 324 EQNKELKEEIDRVKQSYT 341 (569)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 334477888888888887
No 300
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=28.11 E-value=3.1e+02 Score=21.81 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 99 DQKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 99 Eeel~~~ED~~~~E~keL~~~v~~L 123 (205)
++++......|+.-...+...+..+
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l 191 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKL 191 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 301
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=28.10 E-value=2.4e+02 Score=24.77 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
.+.+.-+++|...|+.|+...+.....-.+.+.+++..+..|..|.+-+
T Consensus 5 ~eY~~lld~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR~El 53 (196)
T PF15272_consen 5 SEYLELLDQLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLRQEL 53 (196)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHH
Confidence 3455556677777777776666555555566677777777776666543
No 302
>KOG0978|consensus
Probab=28.05 E-value=7.1e+02 Score=25.99 Aligned_cols=58 Identities=29% Similarity=0.362 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
.+.=..++.++..|..++.+|-..+..++.+++...+|..++....+-+.++...+.+
T Consensus 495 ~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~ 552 (698)
T KOG0978|consen 495 NQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQ 552 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHH
Confidence 3344455666666667777777776777777666666666666555555555544444
No 303
>PRK15396 murein lipoprotein; Provisional
Probab=27.92 E-value=1.9e+02 Score=21.84 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKE 148 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE 148 (205)
.|..+++++..+...+...+....+...|--+|.
T Consensus 36 ~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 36 TLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554444444444443333
No 304
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.67 E-value=3.9e+02 Score=22.82 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 58 E~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
|.||.+...|+....++..|+.+.+.+...++.....-+.-++.+..+=..--...=.|+.+|..+......+....
T Consensus 88 eQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~T 164 (182)
T PF15035_consen 88 EQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTAT 164 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHH
No 305
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=27.43 E-value=2.5e+02 Score=20.62 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRM 129 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~ 129 (205)
.++..+-+....-.+++...|..|+..+..
T Consensus 46 ~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~ 75 (117)
T smart00503 46 EKLERLIDDIKRLAKEIRAKLKELEKENLE 75 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 455666666666666677777777665543
No 306
>KOG3758|consensus
Probab=27.41 E-value=6.9e+02 Score=25.92 Aligned_cols=50 Identities=14% Similarity=0.349 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 91 EK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
-|.+|-..|.++..+-..+-.+-+.....+.++++.+-.+..-+-++..+
T Consensus 51 RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ 100 (655)
T KOG3758|consen 51 RRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSN 100 (655)
T ss_pred HhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888888888888888888888888887776666554444
No 307
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=27.38 E-value=2.3e+02 Score=22.55 Aligned_cols=38 Identities=29% Similarity=0.326 Sum_probs=30.7
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEY 172 (205)
Q Consensus 135 kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~ 172 (205)
++..|++..++.+-.++-+++..|.+...+++-.+..+
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L 41 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTAL 41 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888899888888888888888888888776443
No 308
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=27.38 E-value=2.7e+02 Score=20.85 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhh---hhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRMLELKSKNASDH---VYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~dq---~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+.+..+++.|+.+-+.+.......... ...+-++-.+++.+...+.....++
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~ 93 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKEL 93 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666766666665554333332 3344455555555555555544443
No 309
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=26.97 E-value=2.3e+02 Score=20.00 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
..|-.+..+....|..+...+..|....+....-.. .+.+++++++.|....+.++..
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~----~d~~~~~el~~l~~~i~~~~~~ 60 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD----QDSELKRELDELTDEIKQLFQK 60 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----cchhHHHHHHHHHHHHHHHHHH
Confidence 468888888888888888877766554432222221 1145555555555555444443
No 310
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=26.74 E-value=8.8e+02 Score=26.62 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 119 KIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 119 ~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
-+.+.-+.|++|...+..+++.+.++..+....+.-+..+.+.++
T Consensus 259 ~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~ 303 (1109)
T PRK10929 259 SIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALN 303 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778888888888888888887777777777777766655
No 311
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=26.66 E-value=2.8e+02 Score=20.88 Aligned_cols=51 Identities=25% Similarity=0.422 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
....++.+|..++.+++.....+...+...+. ..-.+.=.+=++||.+.+-
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l~~~~~---~~v~~hI~lLheYNeiKD~ 54 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAELIEDPE---KIVKRHIKLLHEYNEIKDI 54 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCHH---HHHHHHHHHHHHHhHHHHH
Confidence 44556666777677776666666555422222 2222333344455555553
No 312
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.63 E-value=2.8e+02 Score=20.77 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=11.0
Q ss_pred HhhhhhhhhHHHHHHHHhhHHH
Q psy2152 63 AFTENQEHEVELELLREDNEQL 84 (205)
Q Consensus 63 ~~~~n~~~~~Ele~Lred~e~L 84 (205)
+..+......+++.|+.+...+
T Consensus 34 ld~~~r~l~~~~e~lr~~rN~~ 55 (108)
T PF02403_consen 34 LDQERRELQQELEELRAERNEL 55 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3444445555555555554443
No 313
>KOG1003|consensus
Probab=26.42 E-value=4.7e+02 Score=23.33 Aligned_cols=66 Identities=23% Similarity=0.378 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
|...++.+.+....+..++..|-...|.-++++.-..-.|..|+....+|-..+.....+|..+-.
T Consensus 128 l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~ 193 (205)
T KOG1003|consen 128 LSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKK 193 (205)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555677888888888888888888877643
No 314
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=26.06 E-value=1.9e+02 Score=28.46 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhh----------hhhHHHHHHHHh
Q psy2152 17 IVMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ----------EHEVELELLRED 80 (205)
Q Consensus 17 ~~mse~Vy~lA~~I------g~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~----------~~~~Ele~Lred 80 (205)
.+.+++-+.+|..+ |+|++.||...|.+....-.-..|+.-+.++.+..++. ...+.++.--..
T Consensus 349 ~~~~~~h~~~a~~~r~~la~y~e~~~li~i~g~~~lsd~~~~~l~~~~~i~~fL~Q~~~~~~~~t~~~~~~~~~~~~~~~ 428 (461)
T TIGR01039 349 SVVGEEHYDVARGVQQILQRYKELQDIIAILGMDELSEEDKLTVERARRIQRFLSQPFFVAEVFTGQPGKYVPLKDTIRG 428 (461)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhHHHHHHHHhCCccCCHHHHHHHHhHHHHHHHhCCCCchhccccCCCCcccCHHHHHHH
Confidence 34477778888765 88999999999977777778888888999999988887 445555544444
Q ss_pred hH
Q psy2152 81 NE 82 (205)
Q Consensus 81 ~e 82 (205)
+.
T Consensus 429 l~ 430 (461)
T TIGR01039 429 FK 430 (461)
T ss_pred HH
Confidence 33
No 315
>KOG0239|consensus
Probab=26.05 E-value=7.3e+02 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
.+....+....+.+.|+.++..|....+.+...+
T Consensus 231 ~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~ 264 (670)
T KOG0239|consen 231 PLEGLESTIKKKIQALQQELEELKAELKELNDQV 264 (670)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555556666666666666555554443
No 316
>PF10965 DUF2767: Protein of unknown function (DUF2767); InterPro: IPR024493 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=25.82 E-value=99 Score=23.05 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE 58 (205)
.+...||+.|..++.+.++.+.++- ..-|-.+|..||
T Consensus 32 tk~~~Ia~~LrT~l~~~~~kr~~~~-~~~me~aI~~Le 68 (69)
T PF10965_consen 32 TKRIVIADVLRTELANGRSKRSELQ-QQAMELAIDLLE 68 (69)
T ss_pred chhhHHHHHHHHHHhccccccCHHH-HHHHHHHHHHhh
Confidence 3567888999888888888887776 456778888776
No 317
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=25.82 E-value=6.5e+02 Score=24.81 Aligned_cols=32 Identities=13% Similarity=0.393 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhh
Q psy2152 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~L 60 (205)
++.+.+=.++..|.++.+...+--|=.+|..|
T Consensus 385 ~~~~~ap~~lq~~t~~~i~~ml~~V~~ii~~L 416 (507)
T PF05600_consen 385 SQFQNAPSILQQQTAESIEEMLSAVEEIISQL 416 (507)
T ss_pred HHhhhccHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 55555556666777777777665555554444
No 318
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.45 E-value=4.3e+02 Score=22.63 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 149 QELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 149 ~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
..|.+++..+.+-|..| +..|+|.+.+
T Consensus 128 ~~L~~~~~~~~eDY~~L----~~Im~RARkl 154 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTL----IDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33333444444444333 4456665544
No 319
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=25.42 E-value=6.4e+02 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 143 RLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 143 rleErE~elkkE~~~Lh~r~~eli 166 (205)
.|+.+-++.......|.+.|.++-
T Consensus 389 ~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 389 QLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444443
No 320
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=24.83 E-value=5.1e+02 Score=24.98 Aligned_cols=39 Identities=31% Similarity=0.529 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
+.-++++.+.|..+.++.+++..+++..+.+.+.++..+
T Consensus 327 ~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l 365 (373)
T COG5019 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRL 365 (373)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888888888888888888887777766554
No 321
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=24.74 E-value=4.3e+02 Score=22.38 Aligned_cols=73 Identities=25% Similarity=0.344 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKK---EYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkk---E~~~Lh~r~~elir~~~e~~er~k 177 (205)
+|..+...+.+|...-..|...-..|..+.......-..|+.++.+|.. .+......+..++.....-|++..
T Consensus 69 ~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~iA 144 (201)
T PF12072_consen 69 LERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEIA 144 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444433344433344444444444344444444444333 233344444555555555555443
No 322
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.64 E-value=6.7e+02 Score=24.52 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHH
Q psy2152 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLV 53 (205)
Q Consensus 19 mse~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~V 53 (205)
-+++-+.||..|-++-|++|+.-+.-+-.+-|-..
T Consensus 213 ~PedA~~ia~aLL~~sE~~VN~Ls~rar~D~v~~A 247 (434)
T PRK15178 213 SAKQAEFFAQRILSFAEQHVNTVSARMQKERILWL 247 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999988888776543
No 323
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.63 E-value=3.5e+02 Score=23.30 Aligned_cols=52 Identities=27% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhcchhhhhhhhHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLES---IVRMLELKSKNASDHVYRLEEK 147 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~---~~r~Le~k~kn~~dq~~rleEr 147 (205)
.+......+.....+.|.++|..+|+.|+. ..+.|..|+.....++.++.+.
T Consensus 112 ~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~ 166 (171)
T PF04799_consen 112 ARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQ 166 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 324
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.24 E-value=9.9e+02 Score=26.39 Aligned_cols=150 Identities=10% Similarity=0.071 Sum_probs=0.0
Q ss_pred hHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 44 d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~L 123 (205)
+.+...+-.+....+.|-.+...-......++.+..+.+..-.....-.....++..++..+++.......++..+|+.+
T Consensus 854 ~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~ 933 (1353)
T TIGR02680 854 KRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAET 933 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q psy2152 124 ESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSDRMDSRPP 193 (205)
Q Consensus 124 e~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~~~~~~~~ 193 (205)
..+...+.............+.++...+..+..............-.......+.+.-.++...+.++..
T Consensus 934 r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~e~~~~~~~~~a~~~~~ 1003 (1353)
T TIGR02680 934 RAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLREFALTGLLEDALPDTE 1003 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccc
No 325
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=24.08 E-value=1.8e+02 Score=28.48 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=44.2
Q ss_pred cccccHHHHHHHHHH------HHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhh
Q psy2152 16 HIVMSEKVQSLAGSI------YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQ 68 (205)
Q Consensus 16 ~~~mse~Vy~lA~~I------g~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~ 68 (205)
..+.+++-+.+|..+ |+|.+.||...|-+....-.-..|..-+.++.+..++.
T Consensus 349 ~~~~~~~~~~~a~~~r~~la~y~e~e~li~i~gy~~~sd~~d~ai~~~~~i~~fL~Q~~ 407 (463)
T PRK09280 349 PLIVGEEHYDVAREVQQILQRYKELQDIIAILGMDELSEEDKLTVARARKIQRFLSQPF 407 (463)
T ss_pred cccCCHHHHHHHHHHHHHHHHhHHHHHHHHhhCCccCCHHHHHHHHhhHHHHHhccCCc
Confidence 456678888888754 78999999998877777778889999999999998887
No 326
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.74 E-value=2.1e+02 Score=27.02 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy2152 147 KEQELKKEYSIL 158 (205)
Q Consensus 147 rE~elkkE~~~L 158 (205)
+...++.+++.|
T Consensus 51 ~~~~~~~~~~~~ 62 (398)
T PTZ00454 51 ELIRAKEEVKRI 62 (398)
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 327
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=23.71 E-value=6.3e+02 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
+=|+.++..|..+.+++..++..|+.-..++
T Consensus 57 eLLe~v~~rYqR~y~ema~~L~~LeavLqRi 87 (324)
T PF12126_consen 57 ELLEAVEARYQRDYEEMAGQLGRLEAVLQRI 87 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467788999999999999999999866554
No 328
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.60 E-value=2.9e+02 Score=21.72 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=27.9
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174 (205)
Q Consensus 135 kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e 174 (205)
++..|++..++++-.+|-.++..|.....+++-.+..+--
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~ 43 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI 43 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777877777777777777777777776644433
No 329
>KOG0964|consensus
Probab=23.58 E-value=1e+03 Score=26.33 Aligned_cols=34 Identities=32% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHH
Q psy2152 51 PLVVNVLESLDLAFTENQEHEVELELLREDNEQL 84 (205)
Q Consensus 51 P~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~L 84 (205)
.-+..|-+-.+.+-..-.+.+..+..|+++.+|+
T Consensus 258 ~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~ 291 (1200)
T KOG0964|consen 258 DALDKVEDESEDLKCEIKELENKLTNLREEKEQL 291 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555566666666665554
No 330
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=23.57 E-value=4.5e+02 Score=22.16 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=31.1
Q ss_pred HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL 109 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~ 109 (205)
+.+.-|++-.+......+|+.++.+..+.|.+-..=...-+++-.+|-++--.|
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f 71 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNF 71 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344556666667777777777777766665554432222344555555555554
No 331
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=23.45 E-value=3.3e+02 Score=20.59 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy2152 145 EEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSG 183 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~ 183 (205)
-.|-...|.|...| +.-|+.++.||+-+..+-....++
T Consensus 36 ~~Rve~Vk~E~~kL-~~EN~~Lq~YI~nLm~~s~v~~s~ 73 (80)
T PF10224_consen 36 SDRVEEVKEENEKL-ESENEYLQQYIGNLMSSSSVFQST 73 (80)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhcc
Confidence 33444455555555 346888999999887665544433
No 332
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.33 E-value=2.7e+02 Score=22.64 Aligned_cols=27 Identities=33% Similarity=0.308 Sum_probs=10.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 139 DHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 139 dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
|++++++++...+-+++..|.+..-++
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~l 34 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSL 34 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 333
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=23.18 E-value=3.6e+02 Score=20.90 Aligned_cols=56 Identities=21% Similarity=0.264 Sum_probs=36.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQI----EDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~----ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
+..++.+-.+ |-.+|= .++++++-.+ |--|+...++|..++..|..+|-.|..+..
T Consensus 14 ~~~ve~vA~e---Lh~~Ys------sKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 14 EKAVEKVARE---LHALYS------SKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHH---HHHHHh------hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555544 344443 2444444443 466888999999999999888888876654
No 334
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=23.17 E-value=4.3e+02 Score=21.76 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~ 178 (205)
++..+++..=.-.|.++.-+..+...+.||.++.....+...+|.+ .+...|+.....|.
T Consensus 37 ~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~----yL~~~m~~~g~~ki 96 (162)
T PF05565_consen 37 EIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKE----YLLDAMEAAGIKKI 96 (162)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCcee
Confidence 3444444444444555555555555556666655554444444433 34444444444443
No 335
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=23.06 E-value=3.8e+02 Score=21.16 Aligned_cols=31 Identities=32% Similarity=0.433 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhHHHhhhhh-------hhhHHHHHHHHh
Q psy2152 50 MPLVVNVLESLDLAFTENQ-------EHEVELELLRED 80 (205)
Q Consensus 50 mP~VV~vLE~Le~~~~~n~-------~~~~Ele~Lred 80 (205)
+|.|-.+-...+.+...|. ....+++.+|..
T Consensus 26 l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~ 63 (150)
T PF07200_consen 26 LPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQ 63 (150)
T ss_dssp GS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 4555555555555544444 444445555544
No 336
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=23.03 E-value=1.4e+02 Score=23.72 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhh---------hHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYR---------LEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~r---------leErE~elkkE~~~Lh~r~~e 164 (205)
++..+|+.|+++.|.++.+.- +.+.| ++=-+.+|.+.+..+-.|+++
T Consensus 7 ~I~~eI~kLqe~lk~~e~keA---ERigRiAlKAGLgeieI~d~eL~~aFeeiAaRFR~ 62 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREA---ERIGRIALKAGLGEIEIEEAELQAAFEELAKRFRG 62 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcCccccccCHHHHHHHHHHHHHHHhc
Confidence 567788888888888877652 33333 556678899999888888764
No 337
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=22.94 E-value=1.1e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhh
Q psy2152 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHE 71 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~ 71 (205)
=|+|++.++.-+|.|++..---.++..=+.+..+..+|.-..
T Consensus 13 q~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e~LkQ~~~~~ 54 (113)
T PF00306_consen 13 QYRELEEFVQFVGSDALDDEDKLILERGRRIREFLKQNAFDP 54 (113)
T ss_dssp HHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHHHT-BSTTTT
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 388999999999999999888889999999999777765433
No 338
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.82 E-value=4.3e+02 Score=21.70 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=37.0
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH----H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL----R--------KAADQKLFQIEDALEDDKKELNSKIESLESI 126 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l----R--------k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~ 126 (205)
-|+.+++.|+.....-.-|.+. |..+|.-=.. | |+-+++++-.=++--+-+-.|......|+.+
T Consensus 36 rleel~~knqqLreQqk~L~e~----i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eE 111 (120)
T PF10482_consen 36 RLEELFSKNQQLREQQKTLHEN----IKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEE 111 (120)
T ss_pred HHHHHHcccHHHHHHHHHHHHH----HHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHH
Confidence 3677788888766666666666 4444431110 1 2223344444444444444555666666677
Q ss_pred HHHHHh
Q psy2152 127 VRMLEL 132 (205)
Q Consensus 127 ~r~Le~ 132 (205)
|+.|..
T Consensus 112 N~~L~e 117 (120)
T PF10482_consen 112 NKKLKE 117 (120)
T ss_pred HHHHHH
Confidence 766643
No 339
>KOG0570|consensus
Probab=22.78 E-value=5.7e+02 Score=23.02 Aligned_cols=86 Identities=27% Similarity=0.325 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhHHHhhhhhhhhHHHHHHHH---hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 49 LMPLVVNVLESLDLAFTENQEHEVELELLRE---DNEQLVTQYERE---KQLRKAADQKLFQIEDALEDDKKELNSKIES 122 (205)
Q Consensus 49 LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lre---d~e~Lv~q~ErE---K~lRk~~Eeel~~~ED~~~~E~keL~~~v~~ 122 (205)
.+-++++.||+++.++..-......++.++- ..-+||..|.== -.++--.|..+.+..+..+.=++-+....+.
T Consensus 83 nrslllnfleL~~ILi~~P~~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~ 162 (223)
T KOG0570|consen 83 NRSLLLNFLELLDILIRAPDMREEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREV 162 (223)
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999998876666666766654 233444444311 1122222333333334433334444444444
Q ss_pred HHHHHHHHHhhh
Q psy2152 123 LESIVRMLELKS 134 (205)
Q Consensus 123 Le~~~r~Le~k~ 134 (205)
|...-..|..++
T Consensus 163 l~d~~~tL~~~~ 174 (223)
T KOG0570|consen 163 LDDQFQTLRGKL 174 (223)
T ss_pred HHHHHHhhcccC
Confidence 444444444333
No 340
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=22.70 E-value=9.6e+02 Score=25.68 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=16.4
Q ss_pred HHhhHHHhhhhhhhhHHHHHHHHhhHHHHH
Q psy2152 57 LESLDLAFTENQEHEVELELLREDNEQLVT 86 (205)
Q Consensus 57 LE~Le~~~~~n~~~~~Ele~Lred~e~Lv~ 86 (205)
|..+|.+.+.|.+.-..++-++++|.+|..
T Consensus 447 ~k~~e~lq~kneellk~~e~q~~Enk~~~~ 476 (861)
T PF15254_consen 447 LKSQELLQSKNEELLKVIENQKEENKRLRK 476 (861)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555666555533
No 341
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=22.46 E-value=3.2e+02 Score=19.98 Aligned_cols=16 Identities=50% Similarity=0.626 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2152 146 EKEQELKKEYSILHER 161 (205)
Q Consensus 146 ErE~elkkE~~~Lh~r 161 (205)
.+-...-+++..|.++
T Consensus 54 ~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 54 KKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333344444333
No 342
>PRK14127 cell division protein GpsB; Provisional
Probab=22.29 E-value=2.4e+02 Score=22.51 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q psy2152 110 EDDKKELNSKIESLESIVRMLELKSKNASDHVY 142 (205)
Q Consensus 110 ~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~ 142 (205)
-.+...|...+..|++++..|+.++..+..++.
T Consensus 36 ~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 36 IKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444444444444444444444444433
No 343
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=22.24 E-value=6e+02 Score=23.93 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=25.7
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL-----EDDKKELNSKIESL 123 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~-----~~E~keL~~~v~~L 123 (205)
.+-++.+.|+++||-.. .+..- .=.|+++..+|.++ |.|+|.|..-|++.
T Consensus 82 ~~l~dRetEI~eLksQL----~RMrE-----DWIEEECHRVEAQLALKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 82 NRLHDRETEIDELKSQL----ARMRE-----DWIEEECHRVEAQLALKEARKEIKQLKQVIETM 136 (305)
T ss_pred HHHHhhHHHHHHHHHHH----HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777776652 22221 34566677766653 44444444444443
No 344
>KOG2391|consensus
Probab=22.21 E-value=7.2e+02 Score=24.00 Aligned_cols=39 Identities=33% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q psy2152 99 DQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNA 137 (205)
Q Consensus 99 Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~ 137 (205)
.+++......++++...|+..++-|..-.+.-..|++|.
T Consensus 248 ~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~ 286 (365)
T KOG2391|consen 248 KQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENL 286 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Confidence 347777777788888888888888887777766666663
No 345
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.09 E-value=2e+02 Score=18.62 Aligned_cols=12 Identities=58% Similarity=0.637 Sum_probs=5.2
Q ss_pred HHHHHHHhhHHH
Q psy2152 73 ELELLREDNEQL 84 (205)
Q Consensus 73 Ele~Lred~e~L 84 (205)
+.+.||..+|||
T Consensus 9 ekeqLrrr~eqL 20 (32)
T PF02344_consen 9 EKEQLRRRREQL 20 (32)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 346
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.85 E-value=4e+02 Score=20.94 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy2152 117 NSKIESLE 124 (205)
Q Consensus 117 ~~~v~~Le 124 (205)
+.+|+.|+
T Consensus 89 ~k~i~~le 96 (100)
T PF04568_consen 89 RKEIDELE 96 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 347
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.58 E-value=4.3e+02 Score=21.22 Aligned_cols=54 Identities=15% Similarity=0.250 Sum_probs=39.0
Q ss_pred ccccCCCCcccccHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhh
Q psy2152 8 VYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTE 66 (205)
Q Consensus 8 vy~~~~~~~~~mse~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~ 66 (205)
||=|+..--.|..|++|+-+..+-.|+...+++.+ .+--.|=.+++.++.++.+
T Consensus 3 l~fDe~~kiRVldp~~~~~t~~Lk~ec~~F~~ki~-----~F~~iv~~~~~~~~~~A~~ 56 (120)
T PF14931_consen 3 LYFDEENKIRVLDPEKADQTQELKEECKEFVEKIS-----EFQKIVKGFIEILDELAKR 56 (120)
T ss_pred eeecCCCCeeecChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 56666777889999999999999999999888765 3344444455555555544
No 348
>KOG3990|consensus
Probab=21.40 E-value=3.9e+02 Score=24.96 Aligned_cols=71 Identities=24% Similarity=0.299 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhh-hhhhHHHHHHHHH--HH----HHHHH-HHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDH-VYRLEEKEQELKK--EY----SILHE-RYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq-~~rleErE~elkk--E~----~~Lh~-r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
+-.-.|..|+++++.|...+. ..|| +..-.-+..+||- || ..+|. |...|++...+.+.....+..+.+++
T Consensus 222 dh~V~i~~lkeeia~Lkk~L~-qkdq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~sKsSn 300 (305)
T KOG3990|consen 222 DHMVKIQKLKEEIARLKKLLH-QKDQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNSKSSN 300 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHh-hhHHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 445567778888887766553 2333 3444445555543 34 44444 24456677778887777777665555
No 349
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=21.31 E-value=5.2e+02 Score=22.06 Aligned_cols=56 Identities=23% Similarity=0.197 Sum_probs=28.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q psy2152 73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVY 142 (205)
Q Consensus 73 Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~ 142 (205)
.|.=--.+.+=|-.|+++||.. +| .-...+.+++.+=-....+|..||.....++.
T Consensus 32 KLqfAlgeieiL~kQl~rek~a---fe-----------~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~ 87 (153)
T PF15175_consen 32 KLQFALGEIEILSKQLEREKLA---FE-----------KALGSVKSKVLQESSKKDQLITKCNEIESEII 87 (153)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH---HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666777777642 22 22223444444444455566666665544443
No 350
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=21.22 E-value=79 Score=31.79 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh---cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKS---KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~---kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
++.++..+...|..|+.+|..|...+ +.+-|.+.-+-++-..+.| +..-.++|.+-+...-+|=.+++.+
T Consensus 265 ~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~k-lE~~ve~YKkKLed~~~lk~qvk~L 337 (713)
T PF05622_consen 265 LKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADK-LENEVEKYKKKLEDLEDLKRQVKEL 337 (713)
T ss_dssp --------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555443322 4444555444444333322 3334456666666655554444444
No 351
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=21.13 E-value=2e+02 Score=22.41 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=19.7
Q ss_pred ChhHHhhHHHHHHHHHHhhHHHhhh
Q psy2152 42 DEDVVKDLMPLVVNVLESLDLAFTE 66 (205)
Q Consensus 42 G~d~V~~LmP~VV~vLE~Le~~~~~ 66 (205)
..++=.||+|+|+.|+|+|--+.-+
T Consensus 7 ~~~v~~gL~~LVLtvVELLRqlmEr 31 (88)
T PF05121_consen 7 PDNVERGLARLVLTVVELLRQLMER 31 (88)
T ss_pred hHHHhccHHHHHHHHHHHHHHHHHH
Confidence 3456679999999999999776544
No 352
>KOG0979|consensus
Probab=20.67 E-value=1.2e+03 Score=25.81 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHhhHH
Q psy2152 69 EHEVELELLREDNEQ 83 (205)
Q Consensus 69 ~~~~Ele~Lred~e~ 83 (205)
.+..+|..|+++..+
T Consensus 178 ~~h~eL~~lr~~e~~ 192 (1072)
T KOG0979|consen 178 QYHIELMDLREDEKS 192 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 353
>PRK00736 hypothetical protein; Provisional
Probab=20.63 E-value=3.3e+02 Score=19.57 Aligned_cols=6 Identities=33% Similarity=0.562 Sum_probs=2.2
Q ss_pred HHHhhh
Q psy2152 129 MLELKS 134 (205)
Q Consensus 129 ~Le~k~ 134 (205)
.|+.|+
T Consensus 9 ~LE~kl 14 (68)
T PRK00736 9 ELEIRV 14 (68)
T ss_pred HHHHHH
Confidence 333333
No 354
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.58 E-value=8.1e+02 Score=23.98 Aligned_cols=129 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHhhChhH----------------HhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy2152 32 QEFEKMITKYDEDV----------------VKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (205)
Q Consensus 32 ~EfE~lI~~yG~d~----------------V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR 95 (205)
+|++.+-.+|..++ +..+.---..++-.-+.+.+-.......++.|..+...|-.-++.-+...
T Consensus 116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~~a~ 195 (522)
T PF05701_consen 116 AELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAKLAH 195 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS---KNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~---kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
..++++...+...+.+++..+...+.+-+.....|...+ ++...++.........|+.++...+.
T Consensus 196 ~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 196 IEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 355
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.57 E-value=9.1e+02 Score=24.61 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHH
Q psy2152 67 NQEHEVELELLREDNEQLVTQYER 90 (205)
Q Consensus 67 n~~~~~Ele~Lred~e~Lv~q~Er 90 (205)
++....+++.|+.+|+.|+.++..
T Consensus 266 ~~~i~~~i~~lk~~n~~l~e~i~e 289 (622)
T COG5185 266 VHIINTDIANLKTQNDNLYEKIQE 289 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566778899999988887754
No 356
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=20.23 E-value=5.6e+02 Score=22.03 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRMLE 131 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~Le 131 (205)
++|.|..+...++.+++.|+.+++.|.
T Consensus 105 ~~~v~~~e~~kl~~~~e~L~~e~~~L~ 131 (170)
T PRK13923 105 LEDVLSEQIGKLQEEEEKLSWENQTLK 131 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 357
>KOG2228|consensus
Probab=20.07 E-value=1.4e+02 Score=28.93 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHH
Q psy2152 28 GSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLA 63 (205)
Q Consensus 28 ~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~ 63 (205)
..+|.||+++|+.-.+-+---.=|-|++++|.|-++
T Consensus 321 ~lvY~EfrK~iksi~hTs~~~~k~vvlnAfEhL~sl 356 (408)
T KOG2228|consen 321 NLVYAEFRKFIKSIAHTSELWAKTVVLNAFEHLRSL 356 (408)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhhe
Confidence 478999999999755555555668889999998776
Done!