Query psy2152
Match_columns 205
No_of_seqs 92 out of 111
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:38:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 95.0 0.72 2.5E-05 47.0 16.1 80 48-134 960-1039(1080)
2 3o0z_A RHO-associated protein 93.5 2.7 9.4E-05 34.7 15.0 95 69-170 59-160 (168)
3 3qh9_A Liprin-beta-2; coiled-c 93.0 0.55 1.9E-05 34.8 8.1 64 97-161 13-76 (81)
4 3oja_A Leucine-rich immune mol 92.2 3 0.0001 37.4 13.4 59 122-180 425-483 (487)
5 2ocy_A RAB guanine nucleotide 91.4 4.4 0.00015 33.0 12.4 53 66-118 45-97 (154)
6 3o0z_A RHO-associated protein 90.6 6.4 0.00022 32.5 14.3 64 96-159 65-138 (168)
7 3oja_B Anopheles plasmodium-re 90.2 10 0.00036 34.4 15.1 73 107-179 505-577 (597)
8 2dfs_A Myosin-5A; myosin-V, in 90.1 1.1 3.8E-05 45.7 9.4 67 96-162 945-1014(1080)
9 3tnu_A Keratin, type I cytoske 89.5 5.9 0.0002 30.5 12.3 90 71-174 37-129 (131)
10 2fxo_A Myosin heavy chain, car 88.7 6.8 0.00023 30.1 14.0 43 120-162 71-113 (129)
11 3oja_B Anopheles plasmodium-re 88.6 14 0.00048 33.5 15.2 35 125-159 544-578 (597)
12 3ol1_A Vimentin; structural ge 88.3 7.1 0.00024 29.8 11.1 44 60-103 29-72 (119)
13 3tnu_B Keratin, type II cytosk 88.2 7.3 0.00025 29.8 12.6 91 70-174 34-127 (129)
14 2v71_A Nuclear distribution pr 86.6 13 0.00045 31.1 16.4 68 102-169 79-146 (189)
15 2e7s_A RAB guanine nucleotide 84.3 2.9 9.7E-05 33.5 6.8 81 73-153 40-131 (135)
16 3swk_A Vimentin; cytoskeleton, 83.7 11 0.00036 27.5 10.5 72 59-130 8-82 (86)
17 3cl3_D NF-kappa-B essential mo 83.2 1.6 5.5E-05 34.9 4.9 78 95-173 25-103 (130)
18 3i00_A HIP-I, huntingtin-inter 83.2 13 0.00043 28.9 9.9 16 151-166 104-119 (120)
19 1f5n_A Interferon-induced guan 82.3 18 0.00062 34.5 12.7 19 30-48 436-454 (592)
20 2jee_A YIIU; FTSZ, septum, coi 81.7 13 0.00046 27.3 9.3 20 71-90 26-45 (81)
21 3bas_A Myosin heavy chain, str 81.0 14 0.00046 26.9 10.6 74 71-162 13-86 (89)
22 3mq9_A Bone marrow stromal ant 80.4 31 0.001 30.6 16.2 36 60-95 361-396 (471)
23 1i84_S Smooth muscle myosin he 80.0 7.2 0.00025 39.7 9.5 21 71-91 884-904 (1184)
24 2jee_A YIIU; FTSZ, septum, coi 79.2 17 0.00057 26.8 9.0 49 120-168 29-77 (81)
25 2lw1_A ABC transporter ATP-bin 77.0 17 0.00057 26.1 8.3 52 114-165 25-82 (89)
26 2v71_A Nuclear distribution pr 76.8 32 0.0011 28.7 14.0 59 111-169 56-118 (189)
27 1x79_B RAB GTPase binding effe 76.4 24 0.00084 27.2 11.2 49 73-128 7-55 (112)
28 1f5n_A Interferon-induced guan 73.9 33 0.0011 32.7 11.7 34 98-131 499-532 (592)
29 3s9g_A Protein hexim1; cyclin 73.7 14 0.00047 28.4 7.3 50 109-158 35-84 (104)
30 3cvf_A Homer-3, homer protein 72.3 17 0.00057 26.6 7.2 56 109-164 4-59 (79)
31 3u59_A Tropomyosin beta chain; 72.2 26 0.0009 25.7 13.0 60 73-136 10-69 (101)
32 2eqb_B RAB guanine nucleotide 71.9 30 0.001 26.2 12.4 64 60-123 7-70 (97)
33 3u1c_A Tropomyosin alpha-1 cha 71.3 28 0.00097 25.7 13.0 63 72-138 9-71 (101)
34 2oqq_A Transcription factor HY 70.6 12 0.0004 24.6 5.4 35 102-136 8-42 (42)
35 3a7p_A Autophagy protein 16; c 69.9 43 0.0015 27.2 12.0 60 97-167 79-138 (152)
36 1deb_A APC protein, adenomatou 69.8 15 0.00051 25.2 6.0 44 115-158 7-50 (54)
37 3s4r_A Vimentin; alpha-helix, 69.7 30 0.001 25.4 10.9 42 104-145 49-90 (93)
38 2yy0_A C-MYC-binding protein; 66.9 9.5 0.00032 25.6 4.6 27 109-135 24-50 (53)
39 3lay_A Zinc resistance-associa 66.0 53 0.0018 26.8 10.5 59 101-159 75-133 (175)
40 3mq9_A Bone marrow stromal ant 65.7 72 0.0025 28.2 14.1 20 114-133 400-419 (471)
41 1j1d_C Troponin I, TNI; THIN f 64.9 50 0.0017 26.1 9.5 46 106-165 60-105 (133)
42 3cve_A Homer protein homolog 1 64.0 30 0.001 24.8 7.0 49 115-163 4-52 (72)
43 3hnw_A Uncharacterized protein 62.4 54 0.0019 25.7 13.1 103 21-134 28-133 (138)
44 3na7_A HP0958; flagellar bioge 62.4 68 0.0023 26.8 18.6 18 145-162 149-166 (256)
45 2v66_B Nuclear distribution pr 61.7 53 0.0018 25.3 11.6 55 115-169 39-93 (111)
46 3q8t_A Beclin-1; autophagy, AT 60.5 48 0.0016 24.4 9.4 51 116-166 23-73 (96)
47 2o3l_A Hypothetical protein; s 59.1 13 0.00045 27.3 4.5 41 29-69 19-59 (85)
48 3oja_A Leucine-rich immune mol 58.1 1E+02 0.0034 27.3 14.1 23 31-53 323-345 (487)
49 3cl3_D NF-kappa-B essential mo 58.0 12 0.00041 29.8 4.4 67 110-183 54-120 (130)
50 2fxo_A Myosin heavy chain, car 56.8 63 0.0021 24.6 15.3 70 66-135 35-107 (129)
51 1t2k_D Cyclic-AMP-dependent tr 56.1 42 0.0014 22.4 6.9 38 96-133 21-58 (61)
52 1ez3_A Syntaxin-1A; three heli 55.2 58 0.002 23.7 16.2 108 59-170 6-119 (127)
53 1gk4_A Vimentin; intermediate 54.8 55 0.0019 23.3 8.6 66 95-174 10-78 (84)
54 2w83_C C-JUN-amino-terminal ki 54.5 55 0.0019 23.9 7.1 44 113-156 32-75 (77)
55 3vkg_A Dynein heavy chain, cyt 54.4 3E+02 0.01 31.8 17.1 40 120-159 2016-2055(3245)
56 3efg_A Protein SLYX homolog; x 53.4 24 0.00083 25.3 5.0 47 116-162 12-58 (78)
57 3obv_E Protein diaphanous homo 53.0 92 0.0031 28.6 10.1 47 23-69 335-385 (457)
58 2o4t_A BH3976 protein; LEFT-ha 52.4 19 0.00064 27.3 4.5 41 29-69 16-56 (100)
59 1hjb_A Ccaat/enhancer binding 52.1 54 0.0018 24.1 6.8 45 96-140 35-79 (87)
60 3ghg_A Fibrinogen alpha chain; 50.4 1.8E+02 0.0062 28.0 14.1 26 135-160 127-152 (562)
61 3m91_A Proteasome-associated A 48.6 43 0.0015 22.4 5.3 39 112-150 10-48 (51)
62 1j1e_C Troponin I, TNI; THIN f 47.7 1.2E+02 0.0041 25.1 9.8 32 105-136 59-90 (180)
63 2v66_B Nuclear distribution pr 47.4 94 0.0032 23.8 13.6 72 67-138 5-76 (111)
64 1x8y_A Lamin A/C; structural p 46.6 48 0.0016 23.8 5.8 64 98-175 15-81 (86)
65 2w6b_A RHO guanine nucleotide 46.2 45 0.0016 23.0 5.2 31 70-100 15-45 (56)
66 1gu4_A CAAT/enhancer binding p 46.1 77 0.0026 22.7 6.8 40 96-135 35-74 (78)
67 1x8y_A Lamin A/C; structural p 46.0 58 0.002 23.4 6.1 58 113-170 5-66 (86)
68 4etp_A Kinesin-like protein KA 45.3 42 0.0014 30.3 6.4 50 115-164 7-56 (403)
69 3a7p_A Autophagy protein 16; c 44.3 1.3E+02 0.0043 24.4 10.0 68 114-181 78-145 (152)
70 2efr_A General control protein 44.1 1.2E+02 0.0042 24.3 16.4 71 96-166 62-132 (155)
71 3w03_C DNA repair protein XRCC 44.0 39 0.0014 28.1 5.6 22 18-39 67-88 (184)
72 1dip_A Delta-sleep-inducing pe 42.3 39 0.0013 24.7 4.6 28 107-134 18-45 (78)
73 2hh6_A BH3980 protein; 1017660 42.0 26 0.00089 27.1 3.9 41 29-69 34-75 (113)
74 1go4_E MAD1 (mitotic arrest de 41.9 26 0.0009 26.6 3.8 20 143-162 72-91 (100)
75 3u1c_A Tropomyosin alpha-1 cha 40.8 1.1E+02 0.0036 22.5 9.2 48 111-158 30-77 (101)
76 1v9d_A Diaphanous protein homo 40.6 1.5E+02 0.005 25.7 9.0 45 25-69 266-314 (340)
77 3vkg_A Dynein heavy chain, cyt 40.4 1.7E+02 0.0057 33.8 11.3 43 52-94 1921-1970(3245)
78 1ci6_A Transcription factor AT 39.3 88 0.003 21.2 6.9 31 101-131 27-57 (63)
79 3u06_A Protein claret segregat 39.0 63 0.0021 29.4 6.6 44 120-163 12-55 (412)
80 3mov_A Lamin-B1; LMNB1, B-type 38.9 1.1E+02 0.0039 22.4 9.6 64 97-174 23-89 (95)
81 3haj_A Human pacsin2 F-BAR; pa 38.8 2.2E+02 0.0076 25.7 17.8 37 32-69 57-99 (486)
82 3tnu_B Keratin, type II cytosk 37.6 1.3E+02 0.0044 22.7 9.4 59 112-170 51-113 (129)
83 2v4h_A NF-kappa-B essential mo 37.5 1.4E+02 0.0048 23.0 10.0 17 113-129 92-108 (110)
84 1ytz_I Troponin I; muscle, THI 37.5 1.6E+02 0.0056 24.4 8.3 67 65-135 10-86 (182)
85 1ses_A Seryl-tRNA synthetase; 36.7 1.9E+02 0.0065 26.1 9.4 75 111-185 35-110 (421)
86 1ci6_A Transcription factor AT 36.2 48 0.0016 22.5 4.2 23 112-134 24-46 (63)
87 1lwu_C Fibrinogen gamma chain; 35.4 68 0.0023 28.6 6.1 44 120-163 7-50 (323)
88 1t2k_D Cyclic-AMP-dependent tr 34.7 54 0.0018 21.8 4.2 21 115-135 26-46 (61)
89 1jcd_A Major outer membrane li 34.7 96 0.0033 20.8 5.4 38 110-147 10-47 (52)
90 2oa5_A Hypothetical protein BQ 34.2 1.4E+02 0.0049 23.0 6.9 55 114-168 11-70 (110)
91 3tnu_A Keratin, type I cytoske 33.7 1.5E+02 0.0053 22.4 9.4 57 114-170 55-115 (131)
92 2odv_A Plectin 1, HD1; plakin 33.6 2.1E+02 0.0072 23.9 14.3 25 29-54 73-98 (235)
93 2w6a_A ARF GTPase-activating p 33.1 97 0.0033 21.7 5.3 32 100-131 30-61 (63)
94 2dq0_A Seryl-tRNA synthetase; 32.1 3E+02 0.01 25.2 11.4 76 111-186 38-116 (455)
95 3u06_A Protein claret segregat 30.6 92 0.0032 28.3 6.3 56 66-125 4-59 (412)
96 3qne_A Seryl-tRNA synthetase, 30.5 1.7E+02 0.006 27.3 8.2 74 63-137 38-111 (485)
97 3qh9_A Liprin-beta-2; coiled-c 29.9 1.6E+02 0.0056 21.5 9.8 61 65-136 19-79 (81)
98 2zqm_A Prefoldin beta subunit 29.7 1.5E+02 0.0052 21.1 10.4 21 143-163 88-108 (117)
99 1hs7_A Syntaxin VAM3; UP-and-D 29.5 1.1E+02 0.0036 22.9 5.4 52 115-171 37-89 (97)
100 3cvf_A Homer-3, homer protein 29.4 1.6E+02 0.0055 21.3 8.7 62 58-124 13-75 (79)
101 3u59_A Tropomyosin beta chain; 29.2 1.6E+02 0.0056 21.3 10.3 45 112-156 31-75 (101)
102 1m1j_C Fibrinogen gamma chain; 29.0 2.5E+02 0.0085 25.7 8.8 44 122-165 88-131 (409)
103 2dq3_A Seryl-tRNA synthetase; 28.9 2.2E+02 0.0075 25.7 8.4 76 111-186 37-115 (425)
104 1fxk_A Prefoldin; archaeal pro 28.7 1.5E+02 0.0053 20.8 10.0 39 65-107 8-46 (107)
105 3qne_A Seryl-tRNA synthetase, 28.1 2.4E+02 0.0082 26.4 8.7 75 112-186 41-118 (485)
106 1s94_A S-syntaxin; three helix 27.9 2.1E+02 0.0073 22.2 11.6 71 58-130 36-111 (180)
107 1nkp_A C-MYC, MYC proto-oncoge 27.7 1.7E+02 0.0058 20.9 7.8 11 43-53 25-35 (88)
108 3vem_A Helicase protein MOM1; 27.3 2.2E+02 0.0075 22.1 8.1 53 66-118 33-97 (115)
109 3fga_D Shugoshin-like 1; PP2A, 27.1 1.4E+02 0.0048 19.8 5.1 40 119-158 4-43 (47)
110 1j1d_B Troponin T, TNT; THIN f 27.0 1.1E+02 0.0038 23.1 5.2 46 106-165 44-89 (106)
111 3nmd_A CGMP dependent protein 26.8 1.4E+02 0.0049 21.3 5.5 7 74-80 21-27 (72)
112 2i1j_A Moesin; FERM, coiled-co 25.4 38 0.0013 32.0 2.8 12 89-100 324-335 (575)
113 3bj4_A Potassium voltage-gated 25.2 1.6E+02 0.0053 19.7 5.0 31 139-169 17-47 (49)
114 3cve_A Homer protein homolog 1 24.9 1.9E+02 0.0065 20.6 9.9 63 56-123 5-68 (72)
115 2dgc_A Protein (GCN4); basic d 24.7 72 0.0025 21.7 3.5 19 115-133 34-52 (63)
116 3bas_A Myosin heavy chain, str 24.7 1.9E+02 0.0066 20.6 9.9 35 143-177 46-80 (89)
117 1gk4_A Vimentin; intermediate 24.6 1.9E+02 0.0064 20.4 11.8 58 113-170 3-64 (84)
118 2lem_A Apolipoprotein A-I; lip 24.5 2.8E+02 0.0097 22.5 10.0 71 105-175 103-182 (216)
119 3ghg_A Fibrinogen alpha chain; 24.4 3.9E+02 0.013 25.8 9.5 12 33-44 50-61 (562)
120 1a93_B MAX protein, coiled coi 24.1 83 0.0028 19.6 3.3 19 66-84 8-26 (34)
121 2wt7_A Proto-oncogene protein 24.0 1.7E+02 0.0057 19.6 6.9 24 108-131 34-57 (63)
122 2wt7_B Transcription factor MA 24.0 2.2E+02 0.0075 21.0 6.8 19 146-164 69-87 (90)
123 3q8t_A Beclin-1; autophagy, AT 23.9 2.1E+02 0.0073 20.8 10.3 54 109-162 30-83 (96)
124 1lwu_C Fibrinogen gamma chain; 23.5 1.5E+02 0.005 26.4 6.1 19 116-134 38-56 (323)
125 1ytz_T Troponin T; muscle, THI 23.3 1.1E+02 0.0037 23.2 4.5 46 106-165 44-89 (107)
126 1dh3_A Transcription factor CR 23.3 66 0.0023 21.4 2.9 19 116-134 27-45 (55)
127 1l9l_A Granulysin; saposin fol 23.2 50 0.0017 23.0 2.4 22 29-50 40-61 (74)
128 3rfi_A Asp; PSI, saposin, hydr 23.0 38 0.0013 25.0 1.9 30 27-56 4-37 (108)
129 1t3j_A Mitofusin 1; coiled coi 22.9 2.4E+02 0.0082 21.1 7.1 35 101-135 44-81 (96)
130 3iv1_A Tumor susceptibility ge 22.9 2.2E+02 0.0075 20.6 8.6 31 100-130 42-72 (78)
131 4etp_A Kinesin-like protein KA 22.8 2.2E+02 0.0075 25.6 7.2 12 113-124 47-58 (403)
132 3m9b_A Proteasome-associated A 22.8 56 0.0019 28.4 3.2 25 115-139 58-82 (251)
133 2akf_A Coronin-1A; coiled coil 22.6 1.2E+02 0.004 18.6 3.6 22 111-132 6-27 (32)
134 1p9i_A Cortexillin I/GCN4 hybr 22.5 77 0.0026 19.1 2.8 20 116-135 4-23 (31)
135 2dq0_A Seryl-tRNA synthetase; 22.3 2.3E+02 0.0079 25.9 7.4 77 61-138 34-110 (455)
136 1wle_A Seryl-tRNA synthetase; 22.1 3.9E+02 0.013 24.9 8.9 78 108-185 74-162 (501)
137 3viq_B Mating-type switching p 22.0 2.4E+02 0.0082 20.7 8.5 29 108-136 5-33 (85)
138 3s4r_A Vimentin; alpha-helix, 21.9 2.3E+02 0.0079 20.5 6.5 20 117-136 22-41 (93)
139 3he5_A Synzip1; heterodimeric 21.9 1.8E+02 0.006 19.1 5.1 39 116-154 8-46 (49)
140 4emc_A Monopolin complex subun 21.8 2.2E+02 0.0077 23.8 6.5 36 120-155 22-57 (190)
141 2f6m_B Vacuolar protein sortin 21.5 95 0.0033 23.7 3.9 36 52-90 36-71 (109)
142 1ik9_A DNA repair protein XRCC 21.5 3.5E+02 0.012 22.4 13.2 55 55-109 129-183 (213)
143 2j69_A Bacterial dynamin-like 20.9 5.2E+02 0.018 24.5 9.8 68 51-118 615-683 (695)
144 2xdj_A Uncharacterized protein 20.6 2.4E+02 0.0083 20.2 8.2 17 116-132 25-41 (83)
145 1i6z_A BAG-family molecular ch 20.6 1.4E+02 0.0049 23.7 4.9 38 30-67 40-89 (135)
146 3lss_A Seryl-tRNA synthetase; 20.5 5.2E+02 0.018 24.0 10.4 27 63-89 42-68 (484)
147 3viq_B Mating-type switching p 20.3 2.5E+02 0.0086 20.6 5.8 30 113-142 3-32 (85)
148 2p22_B Vacuolar protein sortin 20.3 1E+02 0.0036 23.9 3.9 36 52-90 45-80 (118)
149 1uii_A Geminin; human, DNA rep 20.2 2.6E+02 0.009 20.5 6.1 33 97-130 33-65 (83)
150 2yy0_A C-MYC-binding protein; 20.2 1.2E+02 0.0042 20.1 3.8 13 72-84 19-31 (53)
151 3twe_A Alpha4H; unknown functi 20.1 1E+02 0.0035 18.0 2.9 16 119-134 9-24 (27)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.96 E-value=0.72 Score=47.02 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 48 DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127 (205)
Q Consensus 48 ~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~ 127 (205)
.-++.+-.-++.|+....++.....++..|.++.+.|-.+|+.-....+..++++.++.+ +|+.+|..|+.++
T Consensus 960 ~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~-------~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-------ETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 334444444666777666666666677777777666655555555444555555444443 5555566666655
Q ss_pred HHHHhhh
Q psy2152 128 RMLELKS 134 (205)
Q Consensus 128 r~Le~k~ 134 (205)
..|+...
T Consensus 1033 ~~L~qq~ 1039 (1080)
T 2dfs_A 1033 TLLKTEK 1039 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555433
No 2
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.54 E-value=2.7 Score=34.74 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152 69 EHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED---ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLE 145 (205)
Q Consensus 69 ~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED---~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rle 145 (205)
.....-..|..++-.|-++++.||..|.+..+.+-.++- .+..|.+.+.........++++|.-+ ++-+|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek-------l~~lE 131 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM-------LNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 334444567777778888888888888877754443322 22333333333344444444443333 33344
Q ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2152 146 EKEQ----ELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 146 ErE~----elkkE~~~Lh~r~~elir~~~ 170 (205)
-..+ +|.-++..|.+||.-.++.|-
T Consensus 132 Ke~a~~eid~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 132 KEKNNLEIDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 334678899999998888874
No 3
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.01 E-value=0.55 Score=34.84 Aligned_cols=64 Identities=27% Similarity=0.291 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152 97 AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER 161 (205)
Q Consensus 97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r 161 (205)
.++.++--.| .|-+|.++|.-+|+.++.+--+.+.|+|+..+.+..|..+-..=-.|+.+||..
T Consensus 13 ~~ee~~~~~E-~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 13 EQEEKQRKAE-ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp -CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3444555555 488999999999999999999999999999999877665555555566666653
No 4
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.15 E-value=3 Score=37.36 Aligned_cols=59 Identities=15% Similarity=0.023 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2152 122 SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180 (205)
Q Consensus 122 ~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~ 180 (205)
++|.+......-.+.....+..+.++.+.++++...+-....+...+|.|.+.+...+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 33333333333344556677888899999999999999999999999999999877654
No 5
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.41 E-value=4.4 Score=32.97 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.7
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~ 118 (205)
+......++.....+..+|...|..|+..|..+|.....++...+.=+-.|..
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe 97 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 97 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455667788888899999999999988887666666655544444443
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.64 E-value=6.4 Score=32.53 Aligned_cols=64 Identities=20% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDK----------KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~----------keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
...++++..+--+|.+|+ .+|+.+|..|+.+++++..+.......-..|.++-..|-|+.+++-
T Consensus 65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 556666777777777766 4555555555555555544444444444445555555555555443
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.17 E-value=10 Score=34.37 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~ 179 (205)
+...++.+.+..+.+.++.++..+.........+...++.+..++.+.+..-.++..++-+.......+.|.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555444333334443333333444444433334333333333333333333
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.13 E-value=1.1 Score=45.65 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESL---ESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~L---e~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
+...+++..++..+..|+..|+..++.| +.++..+..+.++..+.+..+++.-..+.+|+..+.+++
T Consensus 945 ~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp ------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555666666664433333 333344444444444444444444444444444444444
No 9
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.52 E-value=5.9 Score=30.48 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e 150 (205)
..++-.++...+.|-.+++.-|..+...+..+..+|+.+..+.++++.+|..|+.+..++.... +.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em--------------~~ 102 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM--------------EQ 102 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence 4566677777666666666666667777888888999999999999998888888766543322 23
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152 151 LKKEYSILHERY---TELLKTHMEYIE 174 (205)
Q Consensus 151 lkkE~~~Lh~r~---~elir~~~e~~e 174 (205)
..+||+.|-+-= --.|-||.-++|
T Consensus 103 ql~EYq~Ll~vKl~Ld~EIatYRkLLE 129 (131)
T 3tnu_A 103 QNQEYKILLDVKTRLEQEIATYRRLLE 129 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 346777666643 334677766654
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=88.74 E-value=6.8 Score=30.12 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
...|......|+.+++...+.+...+++-++|..+...|.+..
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~ 113 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444333
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.59 E-value=14 Score=33.53 Aligned_cols=35 Identities=14% Similarity=0.071 Sum_probs=14.6
Q ss_pred HHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 125 SIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 125 ~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
.++..++.+.....+++..+.+.-..++.+++.|.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 12
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=88.26 E-value=7.1 Score=29.81 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=35.1
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLF 103 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~ 103 (205)
++.+..+|.....++.-++...+.+-.+||.|-..|..+|..+.
T Consensus 29 id~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~ 72 (119)
T 3ol1_A 29 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQ 72 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 56667778888888899999999999999999888877665443
No 13
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.19 E-value=7.3 Score=29.83 Aligned_cols=91 Identities=16% Similarity=0.160 Sum_probs=61.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHH
Q psy2152 70 HEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQ 149 (205)
Q Consensus 70 ~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~ 149 (205)
...++-.++...+.|-.+++.=|..+...+..+..+|..+..+.++++.+|..|+.+..++.... +
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~--------------~ 99 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM--------------A 99 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------H
Confidence 35567777777666666666666667777888888888888888888888888888766553221 2
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152 150 ELKKEYSILHERY---TELLKTHMEYIE 174 (205)
Q Consensus 150 elkkE~~~Lh~r~---~elir~~~e~~e 174 (205)
...+||+.|-+-= --.|-||.-++|
T Consensus 100 ~ql~EYq~LlnvKl~Ld~EIatYRkLLE 127 (129)
T 3tnu_B 100 RLLREYQELMNTKLALDVEIATYRKLLE 127 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence 3345676666533 334666765543
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.63 E-value=13 Score=31.07 Aligned_cols=68 Identities=10% Similarity=0.070 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
+...-..+-.....|+..+.+|...+..|..++......-.-||.+++...--+..+..+|+..|-.+
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333344455555555555555555555555444445566666666667777777777766554
No 15
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.25 E-value=2.9 Score=33.53 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=41.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhcchhhhh
Q psy2152 73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI-----------ESLESIVRMLELKSKNASDHV 141 (205)
Q Consensus 73 Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v-----------~~Le~~~r~Le~k~kn~~dq~ 141 (205)
.+.....+..+|...|..|+..|..+|.+...++...+.=+-.|...- ..++..|.+|....+....-+
T Consensus 40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777788888999999998887766555555444443333322 233444555555555444445
Q ss_pred hhhHHHHHHHHH
Q psy2152 142 YRLEEKEQELKK 153 (205)
Q Consensus 142 ~rleErE~elkk 153 (205)
.+++++-++||.
T Consensus 120 ~~lq~QL~~LK~ 131 (135)
T 2e7s_A 120 DTLTLQLKNLKK 131 (135)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 566666666553
No 16
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.71 E-value=11 Score=27.49 Aligned_cols=72 Identities=26% Similarity=0.316 Sum_probs=56.9
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQI---EDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~---ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
.++.+...|.....++.-++..-+.+-..||.|-..|..+|..+-.+ =|..---+-+|..+|++|.++.-=|
T Consensus 8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888899999999999999999999999999988766544 3444455678888888888876433
No 17
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=83.22 E-value=1.6 Score=34.88 Aligned_cols=78 Identities=14% Similarity=0.183 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE-LKKEYSILHERYTELLKTHMEYI 173 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e-lkkE~~~Lh~r~~elir~~~e~~ 173 (205)
++..+.++..++.....-..++...-.++.-.|++|.+...|.... -++|.+.+. =|+.+..|...|+.||.-|=.+|
T Consensus 25 k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaa-lkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~l 103 (130)
T 3cl3_D 25 CQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAA-LRMERQAASEEKRKLAQLQVAYHQLFQEYDNHI 103 (130)
T ss_dssp --------------------------CTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333332233222222333334444433332222 234444333 56788888888888888776655
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=83.18 E-value=13 Score=28.94 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy2152 151 LKKEYSILHERYTELL 166 (205)
Q Consensus 151 lkkE~~~Lh~r~~eli 166 (205)
.--.|+.|.+.|++++
T Consensus 104 ~Eerf~KLKe~yteLr 119 (120)
T 3i00_A 104 NEQRYSKLKEKYSELV 119 (120)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4446888888888875
No 19
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=82.30 E-value=18 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhChhHHhh
Q psy2152 30 IYQEFEKMITKYDEDVVKD 48 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d~V~~ 48 (205)
+-++++.+...|-..+.+|
T Consensus 436 ~~~~~~~~~~~Y~~~~~kg 454 (592)
T 1f5n_A 436 FVQKLQDLKKKYYEEPRKG 454 (592)
T ss_dssp HHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 3356777777774443333
No 20
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.67 E-value=13 Score=27.26 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=11.8
Q ss_pred hHHHHHHHHhhHHHHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYER 90 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~Er 90 (205)
.-|+++||++|..|..+.+.
T Consensus 26 qmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34666677777666544444
No 21
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.04 E-value=14 Score=26.88 Aligned_cols=74 Identities=18% Similarity=0.162 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e 150 (205)
..++..+.++...|-..|+++...|+..+ .+..+|..+...|...+....+...+|..+..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele------------------~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELE------------------EQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566666676666666666655555444 334444444444433345555556777777777
Q ss_pred HHHHHHHHHHHH
Q psy2152 151 LKKEYSILHERY 162 (205)
Q Consensus 151 lkkE~~~Lh~r~ 162 (205)
|-..+..|..|.
T Consensus 75 LE~~l~el~~rl 86 (89)
T 3bas_A 75 LENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776664
No 22
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.42 E-value=31 Score=30.58 Aligned_cols=36 Identities=11% Similarity=-0.062 Sum_probs=21.1
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR 95 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR 95 (205)
+..+......-..-+..+.+..++++.++-.++..+
T Consensus 361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~ 396 (471)
T 3mq9_A 361 VINAASGRQTVDEALKDAQTRITAARDGLRAVMEAR 396 (471)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 344444444445566777777777777666665554
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=80.00 E-value=7.2 Score=39.66 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=9.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHH
Q psy2152 71 EVELELLREDNEQLVTQYERE 91 (205)
Q Consensus 71 ~~Ele~Lred~e~Lv~q~ErE 91 (205)
..++..|+.+.+.+..+++.+
T Consensus 884 e~~l~~Le~e~~~l~~~L~~e 904 (1184)
T 1i84_S 884 EQKHTQLCEEKNLLQEKLQAE 904 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 24
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=79.16 E-value=17 Score=26.77 Aligned_cols=49 Identities=29% Similarity=0.323 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
|+.|.+.|-.|.............+...-.+|+-|.+...+|.+.|+-.
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333447777778888888888888877643
No 25
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.96 E-value=17 Score=26.13 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc------hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRMLELKSKN------ASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn------~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
..|..+|+.|+.+...|+..+.. ..+.+..+..+-.++..++..+-+|+.+|
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777666532 23456778888888888888888888654
No 26
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=76.79 E-value=32 Score=28.73 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDH----VYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq----~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
...++|..++.+|..++-.+..|..+...+ ++.|+..-..++.....|+.+.+++=..+
T Consensus 56 k~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666655555555554444 66677777777777777766666654443
No 27
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=76.42 E-value=24 Score=27.24 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVR 128 (205)
Q Consensus 73 Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r 128 (205)
..+.|.....+|-.+++++...|+. +||.|..-+.+-..+|..|.....
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~-------Le~~w~~k~E~~k~qV~~L~~~~q 55 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQE-------LEDFIKQSSEDSSHQISALVLRAQ 55 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777776654 456688888887777777776543
No 28
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=73.88 E-value=33 Score=32.68 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 98 ADQKLFQIEDALEDDKKELNSKIESLESIVRMLE 131 (205)
Q Consensus 98 ~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le 131 (205)
++++...+++..+..-+-+..+-.+.++..++|.
T Consensus 499 ~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~ 532 (592)
T 1f5n_A 499 AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLT 532 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333334444444444444443
No 29
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.65 E-value=14 Score=28.42 Aligned_cols=50 Identities=28% Similarity=0.284 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
+-+|.=+|...++.++++|++|....+....++..|+..-..|+.|-+.|
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 33455567778889999999998887766555666665555555554444
No 30
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=72.29 E-value=17 Score=26.59 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
+..++..+..++..++.+|..|+.++.....++.-...+...++.|+..+++..--
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556777888888888888888888887777766665566666666666654443
No 31
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.19 E-value=26 Score=25.68 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=32.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 73 Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
.+.-|+.+.+..+.+++.=...-|.++.+...+|+ +...|..++..++.+.......++.
T Consensus 10 Km~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~----ei~sL~kKiq~lE~eld~~~e~l~~ 69 (101)
T 3u59_A 10 KMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEE----EQQGLQKKLKGTEDEVEKYSESVKE 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665544444555555555443 4444555666665555554444443
No 32
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.89 E-value=30 Score=26.18 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=45.6
Q ss_pred hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~L 123 (205)
|+.+-.+-.....++.....+..+|...|..|+..|..+|.....++...+.=+-.|...-..+
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~M 70 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNM 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555566677788888889999999999999999888887776666555555544333
No 33
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=71.35 E-value=28 Score=25.70 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=36.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 72 VELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 72 ~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
-.+..|+.+.+..+.+++.-...-|.++.+..++| .+...|+.++..++.+.-.+...++...
T Consensus 9 kKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E----~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLE----DDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666766666666665555555555555543 4455566666666666665555554333
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.59 E-value=12 Score=24.60 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
|+.-....+....+|.++|..|+.+|-+|...++|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~n 42 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILKN 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcC
Confidence 33334445555667888888888888888776654
No 35
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.93 E-value=43 Score=27.21 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 97 AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167 (205)
Q Consensus 97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir 167 (205)
+.+.++-.++..++.-.+.+....+.+.+ |.. |..-++.+-..+++|...|.+|+..-..
T Consensus 79 ~l~~ki~dLeeel~eK~K~~e~l~DEl~a----Lql-------q~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 79 SKEQEIRRLKEVIALKNKNTERLNAALIS----GTI-------ENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666555554443333322 222 3456777778888888888888765443
No 36
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.84 E-value=15 Score=25.16 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
.|..||+-|..+|-+|..-+++.+.|+++||-.-.+||-=+..|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 46778999999999999999999999999998888887655444
No 37
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=69.65 E-value=30 Score=25.36 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152 104 QIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLE 145 (205)
Q Consensus 104 ~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rle 145 (205)
.+.+.|+.+..+|..+|+.+..++-+|.....|..+.+.++.
T Consensus 49 ~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 49 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999888877777654
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=66.94 E-value=9.5 Score=25.64 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
++.|..+|+.+++.|..++..|..++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555556666665555555443
No 39
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=66.01 E-value=53 Score=26.78 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
++..+=+.++.+..+|..++.....+.+.|-..-+.-.+.+..+..+..+++.++...+
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666777777888888888877777766555455556666666666665555443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.68 E-value=72 Score=28.17 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q psy2152 114 KELNSKIESLESIVRMLELK 133 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k 133 (205)
..|+.+++.++...-+++.+
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 33444444444443333333
No 41
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=64.87 E-value=50 Score=26.10 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+|.+..-+++|..+|.+|+++.=.|+.+++- -..|.+.|..|.+++
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kvkk--------------q~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTK--------------NITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--------------cchHHHHHHHHHHHH
Confidence 6777888888888888888775556555542 234556666665554
No 42
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=64.00 E-value=30 Score=24.80 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
.+..++..++.+|..|+.++.....++.-...+...++.|+..+++..-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777777777777776666555555556666666555443
No 43
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=62.45 E-value=54 Score=25.65 Aligned_cols=103 Identities=19% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy2152 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTE---NQEHEVELELLREDNEQLVTQYEREKQLRKA 97 (205)
Q Consensus 21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~---n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~ 97 (205)
+.+..+|.-|-.-+..|-..-|...+..-.-.|..+|=..|.++.- ......+++.+..+...| |..-..
T Consensus 28 e~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~l-------K~el~~ 100 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDL-------KHELIA 100 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 6799999999999998885522233333333455555544544432 222222222222222222 111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 98 ADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 98 ~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
++.++ +....+..+|..++..|+.++..|+...
T Consensus 101 ~~~k~----e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 101 AQIKA----ESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 3344555566666777777776666544
No 44
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=62.41 E-value=68 Score=26.75 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy2152 145 EEKEQELKKEYSILHERY 162 (205)
Q Consensus 145 eErE~elkkE~~~Lh~r~ 162 (205)
...-+++.++...|..+-
T Consensus 149 ~~~~~e~~~e~~~l~~~r 166 (256)
T 3na7_A 149 ENEVKNIKETQQIIFKKK 166 (256)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 45
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=61.74 E-value=53 Score=25.27 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
.|+..+.+|...++.|..+++-..-.=.-||.+++...--+..+..+|+..|-.+
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErn 93 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERN 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333333455555555555566666666665443
No 46
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.50 E-value=48 Score=24.40 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
|...+..|+.+...+..-+........++...+...-++|+.++-...+..
T Consensus 23 L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~ 73 (96)
T 3q8t_A 23 LIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELD 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444455566666666666666665555443
No 47
>2o3l_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.05A {Bacillus cereus} SCOP: a.69.4.1
Probab=59.09 E-value=13 Score=27.30 Aligned_cols=41 Identities=5% Similarity=0.286 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
..|+++++-|-.||+-.-..+||++..+|++++..++....
T Consensus 19 ~ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaaa~G~~ 59 (85)
T 2o3l_A 19 FVFKKIQNYMWNFSAGNGMDMLHIQYELIDLFEAGAAEGRQ 59 (85)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999999999999999999988765
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.06 E-value=1e+02 Score=27.34 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhChhHHhhHHHHH
Q psy2152 31 YQEFEKMITKYDEDVVKDLMPLV 53 (205)
Q Consensus 31 g~EfE~lI~~yG~d~V~~LmP~V 53 (205)
..+|+.=++.-|.=.=..|+|++
T Consensus 323 ~~eF~~Eve~L~~i~HrNLV~L~ 345 (487)
T 3oja_A 323 SETERLECERENQARQREIDALK 345 (487)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccchhhHH
Confidence 34555555555544445555543
No 49
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=57.95 E-value=12 Score=29.83 Aligned_cols=67 Identities=21% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q psy2152 110 EDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSG 183 (205)
Q Consensus 110 ~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~ 183 (205)
.-..+.|.-++.++++..|+=..++. -=-.+-++|+--|..|.+-|.+.|++-|--.+|++.++-..
T Consensus 54 ~~~~d~L~lQ~esmeaalkmEr~~~~-------eEKrkLAqLQ~AY~~LfqeYd~~lK~~~~~~e~~~~~ql~d 120 (130)
T 3cl3_D 54 SVQVDQLRMQGQSVEAALRMERQAAS-------EEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLED 120 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHH
Confidence 33455566666677776665444322 11234588999999999999999999997777777665543
No 50
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=56.78 E-value=63 Score=24.58 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=30.9
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLF---QIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~---~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
...+.......|..+...|..|++.|+..-..+++.+. .-...++...+++..+++..+..|..|...-+
T Consensus 35 ~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kk 107 (129)
T 2fxo_A 35 RRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKR 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555554444443222 22333344444444444444444444443333
No 51
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=56.08 E-value=42 Score=22.38 Aligned_cols=38 Identities=24% Similarity=0.164 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
+.....++.--+.+..+..+|...|..|+.++..|...
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555567777777888888888877776543
No 52
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=55.22 E-value=58 Score=23.73 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=64.2
Q ss_pred hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-----KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK 133 (205)
Q Consensus 59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-----k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k 133 (205)
.|+.|+.+-+.-...+..++...++|-...+ +.+- +...+++..+=+....-.+.+..+|..|+..+..++..
T Consensus 6 ~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~--~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~ 83 (127)
T 1ez3_A 6 FMDEFFEQVEEIRGFIDKIAENVEEVKRKHS--AILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556666666666667777776555422222 1121 33455677777777777888888888888877765432
Q ss_pred hcchhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 134 SKNASDHVYRL-EEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 134 ~kn~~dq~~rl-eErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
-.+. ...|+ .-+-.-|++.|..+-..|+..-..|.
T Consensus 84 ~~~s--~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yr 119 (127)
T 1ez3_A 84 NRSS--ADLRIRKTQHSTLSRKFVEVMSEYNATQSDYR 119 (127)
T ss_dssp SCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22243 45666677777777777776444443
No 53
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=54.78 E-value=55 Score=23.29 Aligned_cols=66 Identities=12% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy2152 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER---YTELLKTHME 171 (205)
Q Consensus 95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r---~~elir~~~e 171 (205)
+...+..+..+|..+..+.++++.+|..|+++..++.. .-+...+||+.|-+- -.-.|-||.-
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~--------------e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKE--------------EMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34445566677777777777777777777766554322 112234466655553 3344666766
Q ss_pred HHH
Q psy2152 172 YIE 174 (205)
Q Consensus 172 ~~e 174 (205)
+++
T Consensus 76 LLE 78 (84)
T 1gk4_A 76 LLE 78 (84)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 54
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=54.53 E-value=55 Score=23.87 Aligned_cols=44 Identities=27% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYS 156 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~ 156 (205)
+++|-.+|+.|-.+.-.|..-+.+...-..|++.|-.++-.|+.
T Consensus 32 k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 32 KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666555555554444444444556655555555443
No 55
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=54.45 E-value=3e+02 Score=31.79 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh 159 (205)
++.++.+......++....+.+..++++-+.|+.+|+...
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~ 2055 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555443
No 56
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=53.44 E-value=24 Score=25.26 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
+..+|..||...-..+..+....+.+.+-......|++.+..|.+|.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl 58 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDL 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555554443
No 57
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=52.96 E-value=92 Score=28.55 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhChhHH----hhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 23 VQSLAGSIYQEFEKMITKYDEDVV----KDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 23 Vy~lA~~Ig~EfE~lI~~yG~d~V----~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
+......+...|..++.-||+|+- ..+.+.+...+.....+..+|..
T Consensus 335 L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~fkkA~~eN~~ 385 (457)
T 3obv_E 335 LRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 385 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566778889999998754 46777777777777777777765
No 58
>2o4t_A BH3976 protein; LEFT-handed superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.95A {Bacillus halodurans} SCOP: a.69.4.1
Probab=52.43 E-value=19 Score=27.29 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 29 SIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
..|+++++-|-.||+-.-..+||++..+|++++..++....
T Consensus 16 ~ay~~i~~Yl~~~~~~~g~~~~~il~~lldlfEeaaa~Gk~ 56 (100)
T 2o4t_A 16 IVYKEIQKYLFKVGPVELNEGIGLLSEILGFFEEGAAAGKG 56 (100)
T ss_dssp HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHcCCc
Confidence 46899999999999999999999999999999999988765
No 59
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.14 E-value=54 Score=24.05 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH 140 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq 140 (205)
+.-+.++..--..++.|...|..+|+.|..++..|...+....++
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 333444444455566777777777777777777776655544443
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.42 E-value=1.8e+02 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=10.5
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152 135 KNASDHVYRLEEKEQELKKEYSILHE 160 (205)
Q Consensus 135 kn~~dq~~rleErE~elkkE~~~Lh~ 160 (205)
.+...++.-|+-..+++..+.++|--
T Consensus 127 dnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444433
No 61
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.62 E-value=43 Score=22.44 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e 150 (205)
...+|..++..|...|..|...++..-+++..|.++-..
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344688888888888888888888777777776655443
No 62
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=47.69 E-value=1.2e+02 Score=25.14 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 105 IEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
-+|.+..-+++|..+|.+|+++-=.|+.+++-
T Consensus 59 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkk 90 (180)
T 1j1e_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTK 90 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 37778888888888888888876666665543
No 63
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=47.37 E-value=94 Score=23.83 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 67 NQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 67 n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
+.........|+-+++.+-+.|..-+...-.....|..==+.++..+..|...|-.|+-.|-.|+...++.+
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~ 76 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATI 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 445555666667776666666666554432222223322344677777888888888888888877766544
No 64
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=46.59 E-value=48 Score=23.79 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy2152 98 ADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER---YTELLKTHMEYIE 174 (205)
Q Consensus 98 ~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r---~~elir~~~e~~e 174 (205)
.+..+-.+|..+..+.+.++..|..++.+..++.. .-+...+||+.|-+- -.-.|-||.-+++
T Consensus 15 Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~--------------e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA--------------RMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 35567777777877888888888877766555422 122334566666553 3445777877776
Q ss_pred H
Q psy2152 175 R 175 (205)
Q Consensus 175 r 175 (205)
.
T Consensus 81 G 81 (86)
T 1x8y_A 81 G 81 (86)
T ss_dssp H
T ss_pred C
Confidence 4
No 65
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=46.24 E-value=45 Score=22.98 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy2152 70 HEVELELLREDNEQLVTQYEREKQLRKAADQ 100 (205)
Q Consensus 70 ~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Ee 100 (205)
..-++..|+.|+.++-.-+|.|...||..|.
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~ 45 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888999999999999999888887664
No 66
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=46.06 E-value=77 Score=22.71 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k 135 (205)
+.-+.++..--..+..+...|..+|..|..++..|...+.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566777777788888888887777765443
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=45.99 E-value=58 Score=23.36 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRMLE----LKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le----~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
...|+++...|+...+.++ .....+...+..++..-++++.+......-|..|+..-+
T Consensus 5 ie~L~~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~ 66 (86)
T 1x8y_A 5 LSQLQCQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKL 66 (86)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443 444566667777888888888888888788888776653
No 68
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.27 E-value=42 Score=30.32 Aligned_cols=50 Identities=24% Similarity=0.233 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e 164 (205)
.+..++..|+.++..|+...+++...+..+.++-.+-......||+...+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554444444444444443333444445554443
No 69
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=44.35 E-value=1.3e+02 Score=24.44 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy2152 114 KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMG 181 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~ 181 (205)
..+..+|..|+.+.+.-........|.+..|.=+-..+...+..|..-+.+||...|....+-..-+.
T Consensus 78 ~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444333322223333445556666667777777777887888888888887776655443
No 70
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=44.14 E-value=1.2e+02 Score=24.29 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166 (205)
Q Consensus 96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~eli 166 (205)
..++.+..+-||.++...+.|..++...+..-.--+.++.-..-.+.+++.+-...|..|..+++---..+
T Consensus 62 E~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl 132 (155)
T 2efr_A 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLE 132 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888888888888877777666666666666666777788777777777777766444433
No 71
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=43.96 E-value=39 Score=28.05 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHH
Q psy2152 18 VMSEKVQSLAGSIYQEFEKMIT 39 (205)
Q Consensus 18 ~mse~Vy~lA~~Ig~EfE~lI~ 39 (205)
|-..+|..+|..++.++++-++
T Consensus 67 vSe~~I~~~A~~~~m~~e~Yv~ 88 (184)
T 3w03_C 67 VSESEISQEADDMAMEKGKYVG 88 (184)
T ss_dssp EEHHHHHHHHHHTTCCHHHHHH
T ss_pred cCHHHHHHHHHHhCCCHHHHHH
Confidence 3447899999999988888775
No 72
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=42.30 E-value=39 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 107 DALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 107 D~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
|.++..+++|..++.+|+.+|.-|...+
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456667778888888888887776555
No 73
>2hh6_A BH3980 protein; 10176605, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI, unknown; 2.04A {Bacillus halodurans} SCOP: a.69.4.1
Probab=41.97 E-value=26 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhhC-hhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 29 SIYQEFEKMITKYD-EDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG-~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
..|+++++-|-.|| +-.-..++|++..+|++++..++....
T Consensus 34 ~ay~~i~~Yl~~~~~~~~g~~~~~il~~lldLfEeaaa~G~~ 75 (113)
T 2hh6_A 34 HAYKAIQKYMWTSGGPTDWQDTKRIFGGILDLFEEGAAEGKK 75 (113)
T ss_dssp HHHHHHHHHHSSTTSBCSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHccCCCCchHHHHHHHHHHHHHHHHHHcCCc
Confidence 46899999999998 888889999999999999999988765
No 74
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.93 E-value=26 Score=26.55 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy2152 143 RLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 143 rleErE~elkkE~~~Lh~r~ 162 (205)
..++....|..|...|..+.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666554
No 75
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=40.82 E-value=1.1e+02 Score=22.54 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
...+.+.....+++.++..|..|.+...+.+.+++++-.+.+..+..-
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ 77 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777777777766666666666655555544443
No 76
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=40.58 E-value=1.5e+02 Score=25.70 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhChhHH----hhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 25 SLAGSIYQEFEKMITKYDEDVV----KDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 25 ~lA~~Ig~EfE~lI~~yG~d~V----~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
.+...+..-|..+..-||+|+- ..+...+...+..+..+..+|..
T Consensus 266 ~~~~~~~~~~~~l~~yfged~~~~~~~~fF~~~~~F~~~f~~a~~en~~ 314 (340)
T 1v9d_A 266 MMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK 314 (340)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667888899998853 45666666666666666666654
No 77
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=40.37 E-value=1.7e+02 Score=33.79 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHhhhhhh-------hhHHHHHHHHhhHHHHHHHHHHHHH
Q psy2152 52 LVVNVLESLDLAFTENQE-------HEVELELLREDNEQLVTQYEREKQL 94 (205)
Q Consensus 52 ~VV~vLE~Le~~~~~n~~-------~~~Ele~Lred~e~Lv~q~ErEK~l 94 (205)
.+-+=|+-|..+..+-.. .+.+|+.-..+.+.++.+...+++.
T Consensus 1921 rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ 1970 (3245)
T 3vkg_A 1921 HLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA 1970 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666655554433 3444455555666677666665443
No 78
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.25 E-value=88 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVRMLE 131 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le 131 (205)
.++.--+.+..+..+|..+|+.|+.++..|.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555666666666666666666654
No 79
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=39.05 E-value=63 Score=29.38 Aligned_cols=44 Identities=14% Similarity=0.056 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
+..|++..+.|..+.+........+.++-.+...+...||+...
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333334444444443
No 80
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=38.91 E-value=1.1e+02 Score=22.40 Aligned_cols=64 Identities=16% Similarity=0.185 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy2152 97 AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT---ELLKTHMEYI 173 (205)
Q Consensus 97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~---elir~~~e~~ 173 (205)
..+..+..+|+.+..+...++..|..|+.+..++... -+...++|+.|-+--. -.|-||.-++
T Consensus 23 ~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e--------------~~~ql~EYq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 23 ACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQ--------------MQQQLNDYEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888888888888876654321 1223456776666433 3477777666
Q ss_pred H
Q psy2152 174 E 174 (205)
Q Consensus 174 e 174 (205)
+
T Consensus 89 E 89 (95)
T 3mov_A 89 E 89 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 81
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=38.84 E-value=2.2e+02 Score=25.69 Aligned_cols=37 Identities=5% Similarity=0.070 Sum_probs=20.4
Q ss_pred HHHHHHHHhh------ChhHHhhHHHHHHHHHHhhHHHhhhhhh
Q psy2152 32 QEFEKMITKY------DEDVVKDLMPLVVNVLESLDLAFTENQE 69 (205)
Q Consensus 32 ~EfE~lI~~y------G~d~V~~LmP~VV~vLE~Le~~~~~n~~ 69 (205)
+-|.+|..+| |++ ...+.+-.-.++..++..+.....
T Consensus 57 k~L~kLakk~~~~~~~~~e-~gtl~~aw~~~~~e~e~~a~~H~~ 99 (486)
T 3haj_A 57 QQLTEWARRWRQLVEKGPQ-YGTVEKAWMAFMSEAERVSELHLE 99 (486)
T ss_dssp HHHHHHHHHHHHHHHSSSC-CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666554 222 245666666677777766554433
No 82
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=37.64 E-value=1.3e+02 Score=22.67 Aligned_cols=59 Identities=25% Similarity=0.397 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHH----HhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRML----ELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~L----e~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
+...+.++...|+.....+ ....+.+...+..++..-++++.+......-|.+|+..-+
T Consensus 51 el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 51 EIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444333 3344566667788888888888888888888888876644
No 83
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.52 E-value=1.4e+02 Score=23.02 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRM 129 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~ 129 (205)
+..|..+++.|+.++..
T Consensus 92 Ke~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 92 KEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33455555555555443
No 84
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=37.48 E-value=1.6e+02 Score=24.37 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=36.4
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQ----------IEDALEDDKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~----------~ED~~~~E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
+..+.+....-+|.-..+. |+.|+..+....++++. -+|.+..-+++|...|.+|+++.=.|+.++
T Consensus 10 t~~Rk~~Lk~lll~kA~e~----L~~E~e~k~eeKkkiLaER~kPLnid~se~~L~e~ckELh~~I~~LEeEKYDlE~kv 85 (182)
T 1ytz_I 10 ATARRQHLKSAMLQLAVTE----IEKEAAAKEVEKQNYLAEHSPPLSLPGSMQELQELSKKLHAKIDSVDEERYDTEVKL 85 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHSCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3344445555555555333 34444433333333333 466777777777777777777755555554
Q ss_pred c
Q psy2152 135 K 135 (205)
Q Consensus 135 k 135 (205)
+
T Consensus 86 k 86 (182)
T 1ytz_I 86 Q 86 (182)
T ss_dssp H
T ss_pred H
Confidence 3
No 85
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=36.68 E-value=1.9e+02 Score=26.08 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKN-ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSS 185 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn-~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~ 185 (205)
.+.+.++.+++.|+.+.+.+...+.. ..+....+-.+-.+++.+.+.|.....++-....+.+-+.-.+-..++|
T Consensus 35 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp 110 (421)
T 1ses_A 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAP 110 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 44557888888888888888777654 1122334445555566666666655555544444444443333333333
No 86
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=36.16 E-value=48 Score=22.52 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q psy2152 112 DKKELNSKIESLESIVRMLELKS 134 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~ 134 (205)
+..+|..++..|+.+|..|..++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777766665544
No 87
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.38 E-value=68 Score=28.57 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~ 163 (205)
+.+|.++..+|+..+.+...++..|+..-..++..+..|.+...
T Consensus 7 ~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 7 VQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333
No 88
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.68 E-value=54 Score=21.85 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q psy2152 115 ELNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~k 135 (205)
+|..++..|+.+|..|...+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655554443
No 89
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.67 E-value=96 Score=20.78 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHH
Q psy2152 110 EDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEK 147 (205)
Q Consensus 110 ~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleEr 147 (205)
-.....|-.+|.+|..++..|...+....+...|--+|
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666667777776666655554444444443333
No 90
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=34.24 E-value=1.4e+02 Score=22.97 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcch-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRMLELKSKNA-----SDHVYRLEEKEQELKKEYSILHERYTELLKT 168 (205)
Q Consensus 114 keL~~~v~~Le~~~r~Le~k~kn~-----~dq~~rleErE~elkkE~~~Lh~r~~elir~ 168 (205)
.+|..++.+|+-+|+.|..|+++- .|-+=--.++++-+..=.++|--.=.+-|+.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe~ 70 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIEA 70 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999851 2222223456666655555555555555543
No 91
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.72 E-value=1.5e+02 Score=22.36 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 114 KELNSKIESLESIVRML----ELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 114 keL~~~v~~Le~~~r~L----e~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
..+..+...|+.....+ ....+.+...+..++..-++++.+......-|.+|+..-+
T Consensus 55 ~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 55 QSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKT 115 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444433332 3444666667788888888888888888888888876643
No 92
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=33.58 E-value=2.1e+02 Score=23.88 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhCh-hHHhhHHHHHH
Q psy2152 29 SIYQEFEKMITKYDE-DVVKDLMPLVV 54 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~-d~V~~LmP~VV 54 (205)
.+|.-++.-+.. |+ ..-.|++|.-|
T Consensus 73 ~ll~~lqtklr~-~~~~ppeg~~~~di 98 (235)
T 2odv_A 73 GIYQSLEGAVQA-GQLKVPPGYHPLDV 98 (235)
T ss_dssp HHHHHHHHHHHT-TSSCCCTTCSHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCCCCCHHHH
Confidence 556666666664 44 44556666544
No 93
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=33.10 E-value=97 Score=21.73 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRMLE 131 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~Le 131 (205)
+.|..+-...-+|.+-++.+|.+|+++|-.|.
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 46777788888889999999999999988764
No 94
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.06 E-value=3e+02 Score=25.15 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKN---ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn---~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
.+.+.++.+++.|+.+.+.+...+.. ..+....+-++-.+++.+.+.|.....++-....+.+-+.-.+-...+|.
T Consensus 38 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~ 116 (455)
T 2dq0_A 38 TEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPV 116 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 34455666677777666665544422 11223455566666777777777666666555555554444444344443
No 95
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.59 E-value=92 Score=28.26 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~ 125 (205)
+....+.++..|++.+++|..+.++-+...+...+++.+ -+.+++.|..++..|..
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~----~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ----SNMERKELHNTVMDLRD 59 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCC
Confidence 345566677777777666544444433333333333332 12344455555555543
No 96
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=30.54 E-value=1.7e+02 Score=27.30 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=35.4
Q ss_pred HhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcch
Q psy2152 63 AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNA 137 (205)
Q Consensus 63 ~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~ 137 (205)
+..+......+++.|+.+.+.+..+.-.-|.....++ .+..-=.....+.++|..++..++++...+-+.+-|.
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~-~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAK-DLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444556677788888887766444422111000011 1111122344555555555555555555555554444
No 97
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.87 E-value=1.6e+02 Score=21.52 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=38.1
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
......-.|+..||-. |+.+|.||. ++|++|-.. ..|..-|+.+++.=+.+.+.|...+..
T Consensus 19 ~~~E~L~qEi~~Lr~k----v~elEnErl---QyEkKLKsT----K~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 19 RKAEELLQELRHLKIK----VEELENERN---QYEWKLKAT----KAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHH----HHHHHHHHH---HHHHHHhhh----HHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 3444566677777777 777777753 444444332 245556777777777777777665543
No 98
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.69 E-value=1.5e+02 Score=21.10 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy2152 143 RLEEKEQELKKEYSILHERYT 163 (205)
Q Consensus 143 rleErE~elkkE~~~Lh~r~~ 163 (205)
+++.+...+.++++.+...+.
T Consensus 88 ~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 88 ALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 99
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=29.50 E-value=1.1e+02 Score=22.86 Aligned_cols=52 Identities=21% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHH-HHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 115 ELNSKIE-SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHME 171 (205)
Q Consensus 115 eL~~~v~-~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e 171 (205)
+|+.+|+ +|+..+..|.....+... +. +..-|..+|..+...|..+-|.|.+
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~~l~~----l~-qkeRL~~dF~~l~~~fQ~~qr~y~e 89 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIESNIL----IH-QNGKLSADFKNLKTKYQSLQQSYNQ 89 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSTH----HH-HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cc-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 555555555544442222 11 3445666777777777777776654
No 100
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.41 E-value=1.6e+02 Score=21.26 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=30.2
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD-QKLFQIEDALEDDKKELNSKIESLE 124 (205)
Q Consensus 58 E~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~E-eel~~~ED~~~~E~keL~~~v~~Le 124 (205)
.-|..+-.+|+..+..+..|..+.+.= +.++.+.+.+ +.+.++=|.=-.|..+|...+++|-
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s-----~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEA-----RAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 345555566666666666665554321 1222222222 4455555555555555555555543
No 101
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.24 E-value=1.6e+02 Score=21.29 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHH
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYS 156 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~ 156 (205)
..+.+.....+++.++..|..|.++..+.+...+++-...+..+.
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666666666555555554444433
No 102
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=28.99 E-value=2.5e+02 Score=25.71 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 122 SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 122 ~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
++.++...|+..+.+...++..|+.+-..+...+..|.+....+
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334444444555555566666666555555555554444433
No 103
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=28.86 E-value=2.2e+02 Score=25.66 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcch---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 111 DDKKELNSKIESLESIVRMLELKSKNA---SDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~k~kn~---~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
.+++.++.++++|+++.+.+...+... .+....+-.+-.+++.+.+.|.....++-....+.+-+.-.+-...+|.
T Consensus 37 ~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~ 115 (425)
T 2dq3_A 37 KRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPV 115 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 344567777777777776666554321 1223344455556666666666666665555555555544444444443
No 104
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=28.73 E-value=1.5e+02 Score=20.81 Aligned_cols=39 Identities=13% Similarity=0.087 Sum_probs=18.7
Q ss_pred hhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED 107 (205)
Q Consensus 65 ~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED 107 (205)
...+....++..+... +.+++.++..-..+-.+|..+++
T Consensus 8 ~~f~~lq~~~~~l~~q----~~~l~~~~~e~~~~~~EL~~l~~ 46 (107)
T 1fxk_A 8 AQFQQLQQQAQAISVQ----KQTVEMQINETQKALEELSRAAD 46 (107)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334444445555555 44445555544444455555443
No 105
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.12 E-value=2.4e+02 Score=26.35 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc---hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q psy2152 112 DKKELNSKIESLESIVRMLELKSKN---ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSD 186 (205)
Q Consensus 112 E~keL~~~v~~Le~~~r~Le~k~kn---~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~~~~~~ 186 (205)
+++.++.++++|+++-+.+...+.. ..+.+..+-++-.+++.+++.|.....++-....+.+-..-.+-...+|.
T Consensus 41 ~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~ 118 (485)
T 3qne_A 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVD 118 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3445666666666665555543321 11223445566667777777777776666655555555554444444444
No 106
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=27.86 E-value=2.1e+02 Score=22.17 Aligned_cols=71 Identities=8% Similarity=0.194 Sum_probs=39.6
Q ss_pred HhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL-----RKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 58 E~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l-----Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
..|+.|+..-+.-...+..++....+|-.... +.+ -+....++..+=+....-.+.+..+|..|+..+...
T Consensus 36 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~--~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 36 GFMEEFFEQVEEIRAMIDKISDNVDAVKKKHS--DILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777777777777777555422211 111 012234555566666666666666777776665544
No 107
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.68 E-value=1.7e+02 Score=20.92 Aligned_cols=11 Identities=18% Similarity=0.256 Sum_probs=6.7
Q ss_pred hhHHhhHHHHH
Q psy2152 43 EDVVKDLMPLV 53 (205)
Q Consensus 43 ~d~V~~LmP~V 53 (205)
-+.+..++|.+
T Consensus 25 f~~Lr~~vP~~ 35 (88)
T 1nkp_A 25 FFALRDQIPEL 35 (88)
T ss_dssp HHHHHTTCGGG
T ss_pred HHHHHHHCCCC
Confidence 34566777754
No 108
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.26 E-value=2.2e+02 Score=22.09 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=28.9
Q ss_pred hhhhhhHHHHHHHHhhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 66 ENQEHEVELELLREDNEQLVTQYEREKQL------------RKAADQKLFQIEDALEDDKKELNS 118 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~l------------Rk~~Eeel~~~ED~~~~E~keL~~ 118 (205)
.++-...||+.|+.+.++++.-.|.-|.. |++++..+..+|-.+-+-++++..
T Consensus 33 ~sDPL~~ELeRLr~~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~ 97 (115)
T 3vem_A 33 FNDPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEK 97 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888887777655444332211 345555555555555555554443
No 109
>3fga_D Shugoshin-like 1; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens}
Probab=27.14 E-value=1.4e+02 Score=19.84 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152 119 KIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL 158 (205)
Q Consensus 119 ~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L 158 (205)
.+...|..||.|-+.+.+-..-+.-...-.-+||||+..|
T Consensus 4 ~LK~~Q~NNr~LalALe~Ek~Kvr~Aq~~ILqLkrE~q~L 43 (47)
T 3fga_D 4 LLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECYYL 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899887777655555555555566788888766
No 110
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=27.00 E-value=1.1e+02 Score=23.15 Aligned_cols=46 Identities=35% Similarity=0.345 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+|.++.-+++|..+|.+|+++.=.|+.+++ .-..|.+.|+.|.+++
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv~--------------kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEKFDLQEKFK--------------QQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--------------hhhHHHHHHHHHHHHh
Confidence 455555556666666665555434443332 2234566666665554
No 111
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.82 E-value=1.4e+02 Score=21.28 Aligned_cols=7 Identities=29% Similarity=0.140 Sum_probs=2.7
Q ss_pred HHHHHHh
Q psy2152 74 LELLRED 80 (205)
Q Consensus 74 le~Lred 80 (205)
+..|+..
T Consensus 21 i~eLq~~ 27 (72)
T 3nmd_A 21 LRDLQYA 27 (72)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 112
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.41 E-value=38 Score=32.01 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy2152 89 EREKQLRKAADQ 100 (205)
Q Consensus 89 ErEK~lRk~~Ee 100 (205)
.+||++|..+|+
T Consensus 324 ~~~~~~~~~~~~ 335 (575)
T 2i1j_A 324 QLEIAARERAEK 335 (575)
T ss_dssp CSCCCHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 113
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=25.19 E-value=1.6e+02 Score=19.72 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 139 DHVYRLEEKEQELKKEYSILHERYTELLKTH 169 (205)
Q Consensus 139 dq~~rleErE~elkkE~~~Lh~r~~elir~~ 169 (205)
..+.|.|.+-..+-+.++.|.+-|+.+++.|
T Consensus 17 ~Rl~rVE~qV~~md~KLd~l~~~~~~~l~~~ 47 (49)
T 3bj4_A 17 ARLNRVEDKVTQLDQRLALITDMLHQLLSLH 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999988765
No 114
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.94 E-value=1.9e+02 Score=20.57 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=33.0
Q ss_pred HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD-QKLFQIEDALEDDKKELNSKIESL 123 (205)
Q Consensus 56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~E-eel~~~ED~~~~E~keL~~~v~~L 123 (205)
+..-|..+-.+|+..+..+..|..+.+.= +.++.+.+.+ +.+.++=|.=-.|..+|...+++|
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s-----~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKS-----QSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 44556666777777777777776664431 2222232222 445554444445555555555544
No 115
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.74 E-value=72 Score=21.73 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy2152 115 ELNSKIESLESIVRMLELK 133 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k 133 (205)
+|..+|+.|+.+|..|...
T Consensus 34 ~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555566666666555443
No 116
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.70 E-value=1.9e+02 Score=20.60 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152 143 RLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177 (205)
Q Consensus 143 rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k 177 (205)
.+.....+|.-.+....++...|+..-.++=...+
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344433366666777777666555444333
No 117
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=24.56 E-value=1.9e+02 Score=20.40 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLESIVRML----ELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~L----e~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~ 170 (205)
...+.++..+|+...+.+ ....+++...+..++..-++++.+......-|.+|+..-+
T Consensus 3 l~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~ 64 (84)
T 1gk4_A 3 VDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKM 64 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555565555444 3445666677778888888888888888888888776643
No 118
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=24.52 E-value=2.8e+02 Score=22.46 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhcchhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 105 IEDALEDDKKELNSKIESLESIVR--------MLELKSKNASDHV-YRLEEKEQELKKEYSILHERYTELLKTHMEYIER 175 (205)
Q Consensus 105 ~ED~~~~E~keL~~~v~~Le~~~r--------~Le~k~kn~~dq~-~rleErE~elkkE~~~Lh~r~~elir~~~e~~er 175 (205)
+-..|.+...+++.++.-+-.+.+ .|..++..+++.+ .++...-.+++.-+.-..+.+..-|..+++=+..
T Consensus 103 l~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~kl~~~~e~lk~~l~P~~ee~~~kl~~~leeL~~ 182 (216)
T 2lem_A 103 FQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAPHSEQMRESLAQRLAELKS 182 (216)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSCCSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhC
Confidence 333444555555555444333332 2334445555554 3566666677777666666666666666666655
No 119
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.41 E-value=3.9e+02 Score=25.79 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=5.6
Q ss_pred HHHHHHHhhChh
Q psy2152 33 EFEKMITKYDED 44 (205)
Q Consensus 33 EfE~lI~~yG~d 44 (205)
+++.+|++...|
T Consensus 50 rLQglLdkqErD 61 (562)
T 3ghg_A 50 RMKGLIDEVNQD 61 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhhHHhhcCc
Confidence 344455544443
No 120
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=24.09 E-value=83 Score=19.64 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=9.2
Q ss_pred hhhhhhHHHHHHHHhhHHH
Q psy2152 66 ENQEHEVELELLREDNEQL 84 (205)
Q Consensus 66 ~n~~~~~Ele~Lred~e~L 84 (205)
.|..+..+++.|+..|-.|
T Consensus 8 Kn~a~qqDIddlkrQN~~L 26 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHH
Confidence 3445555555555554443
No 121
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=23.97 E-value=1.7e+02 Score=19.60 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLE 131 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le 131 (205)
.+..+...|...|..|+.+...|.
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544443
No 122
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=23.95 E-value=2.2e+02 Score=20.99 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2152 146 EKEQELKKEYSILHERYTE 164 (205)
Q Consensus 146 ErE~elkkE~~~Lh~r~~e 164 (205)
..-+.+++|...+..+|..
T Consensus 69 ~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 69 QEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555544
No 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.92 E-value=2.1e+02 Score=20.82 Aligned_cols=54 Identities=13% Similarity=0.274 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152 109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162 (205)
Q Consensus 109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~ 162 (205)
.+.++..+...|..++.+.++|...-..|--.-+.+.-+--++..+..+|...|
T Consensus 30 lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 30 VEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777777765554443333334444444455555555444
No 124
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.54 E-value=1.5e+02 Score=26.42 Aligned_cols=19 Identities=5% Similarity=0.002 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy2152 116 LNSKIESLESIVRMLELKS 134 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~ 134 (205)
+..+|..|+..+..|..++
T Consensus 38 ~~~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 38 NQQFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 125
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=23.33 E-value=1.1e+02 Score=23.20 Aligned_cols=46 Identities=28% Similarity=0.237 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152 106 EDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL 165 (205)
Q Consensus 106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el 165 (205)
+|.+..-+++|..+|.+|+++.=.|+.+++ .-..|.+.|+.|.+++
T Consensus 44 ~~~L~e~~keLh~~I~~lEeEKYDlE~kv~--------------kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 44 EDKLRDKAKELWDWLYQLQTEKYDFAEQIK--------------RKKYEIVTLRNRIDQA 89 (107)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------hhhhHHHHHHHHHHHh
Confidence 556677777777777777776545544443 2334566666665543
No 126
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=23.25 E-value=66 Score=21.36 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy2152 116 LNSKIESLESIVRMLELKS 134 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~ 134 (205)
|..+|..|+.+|..|...+
T Consensus 27 LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 27 LENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555666555554433
No 127
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=23.16 E-value=50 Score=22.97 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhhChhHHhhHH
Q psy2152 29 SIYQEFEKMITKYDEDVVKDLM 50 (205)
Q Consensus 29 ~Ig~EfE~lI~~yG~d~V~~Lm 50 (205)
++..++..+|++||+..+..|+
T Consensus 40 ~~~~~C~~~V~~y~~~Ii~~L~ 61 (74)
T 1l9l_A 40 RWRDVCRNFMRRYQSRVIQGLV 61 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999888776
No 128
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=22.99 E-value=38 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhhChhHHhhHH----HHHHHH
Q psy2152 27 AGSIYQEFEKMITKYDEDVVKDLM----PLVVNV 56 (205)
Q Consensus 27 A~~Ig~EfE~lI~~yG~d~V~~Lm----P~VV~v 56 (205)
.+.+-.++..+|+.||+..+.-|+ |..|--
T Consensus 4 ~g~~~~~C~~~V~~Y~~~ii~~l~~~~~P~~iC~ 37 (108)
T 3rfi_A 4 MAIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCS 37 (108)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 467889999999999998877554 665554
No 129
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=22.93 E-value=2.4e+02 Score=21.08 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhc
Q psy2152 101 KLFQIEDALEDDKKELNSKIESLESIVR---MLELKSK 135 (205)
Q Consensus 101 el~~~ED~~~~E~keL~~~v~~Le~~~r---~Le~k~k 135 (205)
....+....+.|.++|..+|..|+...+ .|..|+-
T Consensus 44 ~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~ 81 (96)
T 1t3j_A 44 QVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566677777778877777776443 3444443
No 130
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.85 E-value=2.2e+02 Score=20.57 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 100 QKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 100 eel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
.++..+=..+..|..++...|+.|+..+..|
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555455444444443
No 131
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.82 E-value=2.2e+02 Score=25.55 Aligned_cols=12 Identities=17% Similarity=0.603 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy2152 113 KKELNSKIESLE 124 (205)
Q Consensus 113 ~keL~~~v~~Le 124 (205)
++.|..++..|.
T Consensus 47 rr~l~n~~~elk 58 (403)
T 4etp_A 47 RRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 334444444444
No 132
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=22.77 E-value=56 Score=28.42 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhh
Q psy2152 115 ELNSKIESLESIVRMLELKSKNASD 139 (205)
Q Consensus 115 eL~~~v~~Le~~~r~Le~k~kn~~d 139 (205)
+|..++.+|...|+.|....+.+.+
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~ 82 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQ 82 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444454444444444433333
No 133
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.59 E-value=1.2e+02 Score=18.60 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy2152 111 DDKKELNSKIESLESIVRMLEL 132 (205)
Q Consensus 111 ~E~keL~~~v~~Le~~~r~Le~ 132 (205)
.+.+.|+.-|..||+...+|+.
T Consensus 6 e~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666655555543
No 134
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=22.51 E-value=77 Score=19.11 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhhc
Q psy2152 116 LNSKIESLESIVRMLELKSK 135 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~k 135 (205)
|..-+++|+.+|++|..|..
T Consensus 4 lnallasleaenkqlkakve 23 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777765543
No 135
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=22.35 E-value=2.3e+02 Score=25.87 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=36.0
Q ss_pred HHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152 61 DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138 (205)
Q Consensus 61 e~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~ 138 (205)
-++..+......+++.|+.+++.+-.+.-.=|.....+ +.+..-=.....+.++|..++..++++...+-+.+-|..
T Consensus 34 ~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 34 LKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPV-DELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 33444556667777778777766644443211100000 111111122344455555555555555555555555544
No 136
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.06 E-value=3.9e+02 Score=24.88 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKNAS-----------DHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERT 176 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~-----------dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~ 176 (205)
.+..+.+.++.+++.|+++.+.+...+.... +....+-++-.+++.+++.|.....++-....+.+-..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~i 153 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred hhhccCCCC
Q psy2152 177 KLMMGSGSS 185 (205)
Q Consensus 177 k~~~~~~~~ 185 (205)
-.+-...+|
T Consensus 154 PN~~~~~vP 162 (501)
T 1wle_A 154 PNQTHPDVP 162 (501)
T ss_dssp CCCCCTTCC
T ss_pred CCCCCCCCC
No 137
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.02 E-value=2.4e+02 Score=20.69 Aligned_cols=29 Identities=34% Similarity=0.268 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152 108 ALEDDKKELNSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 108 ~~~~E~keL~~~v~~Le~~~r~Le~k~kn 136 (205)
.++.+.+.|..++.+|+.+...+..+.++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L~~ 33 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKLKN 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556666666666666666555543
No 138
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.94 E-value=2.3e+02 Score=20.50 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy2152 117 NSKIESLESIVRMLELKSKN 136 (205)
Q Consensus 117 ~~~v~~Le~~~r~Le~k~kn 136 (205)
-.+|-.|+.+|+.|+.+...
T Consensus 22 IdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665543
No 139
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.88 E-value=1.8e+02 Score=19.11 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHH
Q psy2152 116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKE 154 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE 154 (205)
|...|++|+.+|..|..|----.|-+.-|+...++|+|.
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 334466666666655444333335566666666666654
No 140
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.75 E-value=2.2e+02 Score=23.77 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHH
Q psy2152 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEY 155 (205)
Q Consensus 120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~ 155 (205)
|.+|+.+|..|..++....+.+..|.++-+.++...
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555566666665555555555555555544444433
No 141
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=21.54 E-value=95 Score=23.73 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH
Q psy2152 52 LVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (205)
Q Consensus 52 ~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~Er 90 (205)
-||..||.||.++.+.--...+ -...+.+||.||..
T Consensus 36 SII~tle~LEkAyikD~It~~e---Yt~~c~rLL~QyKt 71 (109)
T 2f6m_B 36 SIVITLDHVEKAYLKDSIDDTQ---YTNTVDKLLKQFKV 71 (109)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHHHH
Confidence 5788999999998876443322 67788889999864
No 142
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.49 E-value=3.5e+02 Score=22.40 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL 109 (205)
Q Consensus 55 ~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~ 109 (205)
+.++...++..+|.....+.+.|..+..+|..|||.=-..+..+|..+..---..
T Consensus 129 ~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~l 183 (213)
T 1ik9_A 129 YALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILV 183 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444556666667777888888888888776666666665554433333
No 143
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.94 E-value=5.2e+02 Score=24.48 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHHHhhh-hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 51 PLVVNVLESLDLAFTE-NQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118 (205)
Q Consensus 51 P~VV~vLE~Le~~~~~-n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~ 118 (205)
|..=+|-++.+.+... .+..+..++..+...+.++.+.+.......+--+++..+|+....+...+.+
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 683 (695)
T 2j69_A 615 VVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEA 683 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4444555566655533 3455556666666666666665554333333333444444444444333333
No 144
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=20.64 E-value=2.4e+02 Score=20.24 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy2152 116 LNSKIESLESIVRMLEL 132 (205)
Q Consensus 116 L~~~v~~Le~~~r~Le~ 132 (205)
|..+++.|+.++..|.-
T Consensus 25 Lq~Ql~~Lq~Ev~~LRG 41 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRG 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444433
No 145
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.64 E-value=1.4e+02 Score=23.67 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhChh------------HHhhHHHHHHHHHHhhHHHhhhh
Q psy2152 30 IYQEFEKMITKYDED------------VVKDLMPLVVNVLESLDLAFTEN 67 (205)
Q Consensus 30 Ig~EfE~lI~~yG~d------------~V~~LmP~VV~vLE~Le~~~~~n 67 (205)
+-.++..|-..|=.+ .+.+.+-...+.||.||++.-..
T Consensus 40 l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~ 89 (135)
T 1i6z_A 40 LNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPE 89 (135)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 445666666666332 35566777788999999987654
No 146
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.55 E-value=5.2e+02 Score=24.04 Aligned_cols=27 Identities=7% Similarity=-0.160 Sum_probs=18.1
Q ss_pred HhhhhhhhhHHHHHHHHhhHHHHHHHH
Q psy2152 63 AFTENQEHEVELELLREDNEQLVTQYE 89 (205)
Q Consensus 63 ~~~~n~~~~~Ele~Lred~e~Lv~q~E 89 (205)
+..+.+....+++.|+...+.+..+.-
T Consensus 42 ld~~~r~~~~~~~~l~~~rN~~sk~i~ 68 (484)
T 3lss_A 42 ADKKWRRTQFLTEASKKLINICSKAVG 68 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667788888888777655543
No 147
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=20.30 E-value=2.5e+02 Score=20.57 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q psy2152 113 KKELNSKIESLESIVRMLELKSKNASDHVY 142 (205)
Q Consensus 113 ~keL~~~v~~Le~~~r~Le~k~kn~~dq~~ 142 (205)
...|++.|+.|+++..+|+..+..+..+..
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346778888888888888877776665543
No 148
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=20.25 E-value=1e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.353 Sum_probs=27.4
Q ss_pred HHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHH
Q psy2152 52 LVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90 (205)
Q Consensus 52 ~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~Er 90 (205)
-||..||.||.++.+.--...+ -...+.+||.||..
T Consensus 45 SII~tle~LEKAyikD~It~~e---Yt~~C~rLL~QYKt 80 (118)
T 2p22_B 45 SIVITLDHVEKAYLKDSIDDTQ---YTNTVDKLLKQFKV 80 (118)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCHHH---HHHHHHHHHHHHHH
Confidence 5788999999999876543322 67788889999864
No 149
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.21 E-value=2.6e+02 Score=20.47 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152 97 AADQKLFQIEDALEDDKKELNSKIESLESIVRML 130 (205)
Q Consensus 97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~L 130 (205)
-||++-..+++++. |.+.|...|++|++++..|
T Consensus 33 lAE~RR~AL~eaL~-EN~~Lh~~ie~l~eEi~~l 65 (83)
T 1uii_A 33 VAEKRRKALYEALK-ENEKLHKEIEQKDNEIARL 65 (83)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34444455555543 4455666666666666544
No 150
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.16 E-value=1.2e+02 Score=20.06 Aligned_cols=13 Identities=38% Similarity=0.572 Sum_probs=7.1
Q ss_pred HHHHHHHHhhHHH
Q psy2152 72 VELELLREDNEQL 84 (205)
Q Consensus 72 ~Ele~Lred~e~L 84 (205)
.+++.|+.+|+.|
T Consensus 19 ~d~eaLk~E~~eL 31 (53)
T 2yy0_A 19 PEIELLRLELAEM 31 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 4555555555554
No 151
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.13 E-value=1e+02 Score=18.04 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhh
Q psy2152 119 KIESLESIVRMLELKS 134 (205)
Q Consensus 119 ~v~~Le~~~r~Le~k~ 134 (205)
.++.||+..|.|..|+
T Consensus 9 eledlqerlrklrkkl 24 (27)
T 3twe_A 9 ELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
Done!