RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2152
(205 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 45.2 bits (107), Expect = 6e-06
Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 5/152 (3%)
Query: 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLR 78
M +++ L + +E E K + + + + + + +N + E +LL
Sbjct: 953 MQQQMLDLEEQL-EEEEAARQKLQLEK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 79 EDNEQLVTQYEREKQLRK---AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135
E L T E++ K K + LE K+ + LE I R LE +S
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Query: 136 NASDHVYRLEEKEQELKKEYSILHERYTELLK 167
+ + + L+ + ELK + + E L
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102
Score = 43.7 bits (103), Expect = 2e-05
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL---EDDKKELNSKIES 122
E + +++ + +D + Q + + RK ++++ + L E+ K L
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 123 LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
ES++ LE++ K LE+ +++L+ E S LHE+ EL E +
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Score = 42.1 bits (99), Expect = 7e-05
Identities = 27/112 (24%), Positives = 51/112 (45%)
Query: 68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127
+ ELE + + E + + E Q +A +K+ Q LE+ +E + + L+
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 128 RMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
+ K K D + +E++ +L KE +L ER ++L E E+ K +
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Score = 41.7 bits (98), Expect = 9e-05
Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA------LEDDKKELNSKIE 121
++ + E EL E E V ++++L + + +IE+ L+ +KK++ ++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958
Query: 122 SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167
LE + E + + K ++++ + I+ ++ +L K
Sbjct: 959 DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004
Score = 41.4 bits (97), Expect = 1e-04
Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 43 EDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKL 102
E+++ ++ + E E ++ + ++ L E E+ ++ + + AD K+
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 103 FQIED---ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159
++ED +ED +L + + LE V L + L + + + + S L
Sbjct: 986 KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045
Query: 160 ERYTELLKTHMEYIERTK 177
R + K+ E +E+ K
Sbjct: 1046 VRLKKEEKSRQE-LEKIK 1062
Score = 37.9 bits (88), Expect = 0.002
Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 10/127 (7%)
Query: 56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA---LEDD 112
E A E +E E + L E+ L + + E +L A++ ++ LE+
Sbjct: 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI 928
Query: 113 KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEY 172
E+ ++IE E + L+ + K +++++ +L+++ +L +
Sbjct: 929 LHEMEARIEEEEERSQQLQAEKK-------KMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 173 IERTKLM 179
+ K M
Sbjct: 982 DGKIKKM 988
Score = 37.1 bits (86), Expect = 0.003
Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 18/156 (11%)
Query: 32 QEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91
+ K+ K+ E ++ +L + +S ++ E E L E +L Q
Sbjct: 1028 KNLTKLKNKH-ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 92 KQLRKAADQKLFQIEDALEDDK----------KELNSKIESLESIVRMLELKSKNASDHV 141
K +++L LED+ +EL S I L+ + K+
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE--DLESEKAARN---- 1140
Query: 142 YRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
+ E+++++L +E L + L T E
Sbjct: 1141 -KAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175
Score = 37.1 bits (86), Expect = 0.003
Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 5/148 (3%)
Query: 21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLRED 80
K++ + I E K ++ K L V ++ +L + +
Sbjct: 983 GKIKKMEDDI-LIMEDQNNKLTKER-KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 81 NEQLVTQYEREKQLRKAADQKLFQIEDALED---DKKELNSKIESLESIVRMLELKSKNA 137
+L + ++E++ R+ ++ ++E D EL ++I L++ + E + + A
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100
Query: 138 SDHVYRLEEKEQELKKEYSILHERYTEL 165
+ ++ K+ L ++L
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDL 1128
Score = 33.3 bits (76), Expect = 0.059
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 13/153 (8%)
Query: 19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLR 78
+ E+V L ++ +E EK + ++ + L QE E L
Sbjct: 1009 LEERVSDLTTNLAEEEEKAKNL--TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Query: 79 EDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138
++ L Q + +L + E++ + +++E S K +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAK----KEEELQAALARLEDETSQKNNALKKIR--- 1119
Query: 139 DHVYRLEEKEQELKKEYSILHERYTELLKTHME 171
LE +L+++ + K +
Sbjct: 1120 ----ELESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 31.7 bits (72), Expect = 0.15
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 1/115 (0%)
Query: 25 SLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQL 84
S E + I + + + L L+ ++ ++ L L
Sbjct: 1070 SDLHEQIAELQAQIAELKAQL-AKKEEELQAALARLEDETSQKNNALKKIRELESHISDL 1128
Query: 85 VTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASD 139
E EK R A+++ + + LE K EL +++ + + K+ D
Sbjct: 1129 QEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 30.6 bits (69), Expect = 0.40
Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 15/145 (10%)
Query: 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90
QE EK+ K + + DL + + + E + +L E+ + + + E
Sbjct: 1055 RQELEKIKRKLEGES-SDLHEQIAELQA-------QIAELKAQLAKKEEELQAALARLED 1106
Query: 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150
E + A +K+ LE +L +ES ++ E + ++ S+ LE + E
Sbjct: 1107 ETSQKNNALKKI----RELESHISDLQEDLESEKAARNKAEKQKRDLSE---ELEALKTE 1159
Query: 151 LKKEYSILHERYTELLKTHMEYIER 175
L+ + + + ++
Sbjct: 1160 LEDTLDTTATQQELRGSDYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 41.2 bits (97), Expect = 1e-04
Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 8/134 (5%)
Query: 66 ENQEHEVE--LELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL---EDDKKELNSKI 120
EN+ +++ ++ ++ + L+ + + +KL + L E++ K +++
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE---LLKTHMEYIERTK 177
SL+ + L + +EE + K E L E LLKT E + R
Sbjct: 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046
Query: 178 LMMGSGSSDRMDSR 191
++ M+ +
Sbjct: 1047 HDQAKEITETMEKK 1060
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 73 ELELLREDNEQL---VTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRM 129
+E ++ + L + Q +R+ + + L + + LE K+ S +RM
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 130 LELKSKNASDHVYRLEEK-------EQELKKEYSILHERYTELLKTHMEYIERTK 177
E ++KNA++ V L+E+ + + E + E + + + K
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 38.2 bits (89), Expect = 0.001
Identities = 17/125 (13%), Positives = 48/125 (38%), Gaps = 7/125 (5%)
Query: 58 ESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED---ALEDDKK 114
+D E + ++ L + + + + ++++ + +L+++
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Query: 115 ELNSKIESLESIVRMLELKSKNA----SDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170
+L ++ ++ + +E + V L+E+ LK E L+ R + K
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054
Query: 171 EYIER 175
E +E+
Sbjct: 1055 ETMEK 1059
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Query: 73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLEL 132
EL+ L+ + + + L Q +I++ + K L K+ +LE
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE-QNKEYKSLLEKMNNLEITYSTETE 963
Query: 133 KSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
K ++ + + EE+ + L E +L K + K +
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Score = 37.0 bits (86), Expect = 0.003
Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYERE----KQLRKAADQKLFQIEDALED- 111
+E L ++ E + + L+E+ +L + + K + + AD+ + E + +
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028
Query: 112 --DKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY 162
L ++ E L R+ + + +L E+ ++L+ + + RY
Sbjct: 1029 KEQNTLLKTEKEELNR--RIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 33.2 bits (76), Expect = 0.052
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 3/118 (2%)
Query: 62 LAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD--QKLFQIEDALEDDKKELNSK 119
LA + L+ +++ + E K+L+ A ++ ++ LE+ +L K
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRE-LKKLKIEARSVERYKKLHIGLENKIMQLQRK 936
Query: 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
I+ + L K N EK + + + E + E
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/130 (10%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 63 AFTENQEHEVELELLREDNEQLVTQ--------YEREKQLRKAADQKLFQIEDAL----E 110
A + +++ +++ ++ Q + KA +
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHM 170
K +E + + LE K + ++ + L ++ + L Y+ +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 171 EYIERTKLMM 180
+ER ++
Sbjct: 967 SDVERLRMSE 976
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.002
Identities = 37/214 (17%), Positives = 66/214 (30%), Gaps = 59/214 (27%)
Query: 15 SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDL-------MPLVVNVL-ESL--DLAF 64
+HI + +L E + ++ KY + +DL P ++++ ES+ LA
Sbjct: 287 THISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 65 TENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKK------EL-- 116
+N +H V + L E + L A +K+F L
Sbjct: 344 WDNWKH-VNCDKLTTIIESSL------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 117 -NSKIESLESIVRMLELKS---KNASDHVYRLEEKEQELKKEYSI---LH----ERYTEL 165
+ + +V L S K + + ELK + LH + Y
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 166 LKT--------------------HMEYIERTKLM 179
H++ IE + M
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Score = 37.5 bits (86), Expect = 0.002
Identities = 29/207 (14%), Positives = 73/207 (35%), Gaps = 52/207 (25%)
Query: 8 VYGTHDDSHIVMS----EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLA 63
+ + HI+MS L ++ + E+M+ K+ E+V++ +++ +++
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104
Query: 64 FTENQE-HEVELELLREDNEQL----VTQYEREKQLRKAADQKLFQIE------------ 106
+ + + + L DN+ V++ + +LR+A L ++
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA----LLELRPAKNVLIDGVLG 160
Query: 107 --------DALEDDK-----------------KELNSKIESLESIVRMLELKSKNASDHV 141
D K + +E L+ ++ ++ + SDH
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 142 YRLEEKEQELKKEYSIL--HERYTELL 166
++ + ++ E L + Y L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCL 247
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 36.6 bits (85), Expect = 0.004
Identities = 20/174 (11%), Positives = 61/174 (35%), Gaps = 18/174 (10%)
Query: 22 KVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDN 81
+++++ S+ + + + + + +L+ A E+ E ++
Sbjct: 825 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKI 884
Query: 82 EQLVTQYEREKQLRK--AADQKLFQIEDALEDDKKELNSKIESLESIVRML--------- 130
L+ +Y R + + A + ++ + D + +K+++LE+
Sbjct: 885 AVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNS 944
Query: 131 -------ELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
+L N + E K+ ++++ + T + +ER +
Sbjct: 945 DLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998
Score = 35.4 bits (82), Expect = 0.010
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 62 LAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD--QKLFQIEDALEDDKKELNSK 119
T N+ L + + E K+ +K A QK +I LE+ +
Sbjct: 849 AGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVY 908
Query: 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
+ S E+ + +++K + LE + E + + +L E
Sbjct: 909 LGSNETGDSITAVQAK-----LKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 963
Query: 180 M 180
+
Sbjct: 964 L 964
Score = 33.9 bits (78), Expect = 0.030
Identities = 13/106 (12%), Positives = 39/106 (36%), Gaps = 2/106 (1%)
Query: 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYER-EKQLRKAADQKLFQIEDALEDDKKE 115
+S+ L E + ++ ++ E + + E Q L Q+ + + E
Sbjct: 904 TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 963
Query: 116 LNSKIES-LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE 160
L + ++ ++ ++ + + E+ Q+++ + H
Sbjct: 964 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.005
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 23/97 (23%)
Query: 84 LV--TQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHV 141
LV + QL++ ++ L + + D E + E + + L +V
Sbjct: 21 LVPTASFFIASQLQEQFNKILPEPTEGFAADD-EPTTPAELV---GKFL--------GYV 68
Query: 142 YRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178
L E + ++ ++L + E L
Sbjct: 69 SSLVEPSKV---------GQFDQVLNLCLTEFENCYL 96
Score = 33.1 bits (75), Expect = 0.069
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 37/171 (21%)
Query: 33 EFEKMITKY-DEDVVKDLMPLVVNVLESLDLAFTENQE-HEVELELLREDNEQLVTQYER 90
+F ++ + V ++ L + + E + H + +LL+E++ LV +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV----K 118
Query: 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIES--LESIVRMLELKSKNASDHVYRL---- 144
K+L K A K+ + K S ++ NA + +
Sbjct: 119 TKELIKNY----IT---ARIMAKRPFDKKSNSALFRAV------GEGNA--QLVAIFGGQ 163
Query: 145 ---EEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSDRMDSRP 192
++ +EL+ Y + Y L+ + I+ + + +D+
Sbjct: 164 GNTDDYFEELRDLY----QTYHVLVG---DLIKFSAETLSELIRTTLDAEK 207
Score = 31.2 bits (70), Expect = 0.25
Identities = 18/106 (16%), Positives = 28/106 (26%), Gaps = 30/106 (28%)
Query: 30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESL-DLAFTENQEHEVELELLREDNEQ--LVT 86
I + + MI + D + + E F E L L Q L
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF----RSEKGL-LSATQFTQPALTL 1738
Query: 87 ----QYE--REKQLRK----------------AADQKLFQIEDALE 110
+E + K L A+ + IE +E
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 35.0 bits (81), Expect = 0.012
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 114 KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKE-YSIL 158
EL +KI+SL + R E N + V+RL EK EL ++ ++ L
Sbjct: 33 AELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADL 78
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 34.2 bits (79), Expect = 0.023
Identities = 12/99 (12%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Query: 57 LESLDLAFTENQEHEVELELLREDNEQLVTQYER-EKQLRKAADQKLFQIEDALEDDKKE 115
+S+ L E + ++ ++ E + + E Q L Q+ + + E
Sbjct: 896 TKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPE 955
Query: 116 LNSKIES-LESIVRMLELKSKNASDHVYRLEEKEQELKK 153
L + ++ ++ ++ + + E+ Q+++
Sbjct: 956 LTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIED 994
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 29.5 bits (67), Expect = 0.17
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD---QKLFQIEDALEDDKKEL 116
+D + EVE + L ED +L + + E R+ A+ Q Q D + +L
Sbjct: 9 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDL 68
Query: 117 NSKIESLE 124
K+ESL+
Sbjct: 69 ERKVESLQ 76
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 30.2 bits (67), Expect = 0.47
Identities = 18/103 (17%), Positives = 32/103 (31%)
Query: 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125
+ EL L E + E+ Q++ I L + I SL
Sbjct: 87 MRRSIVSELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAE 146
Query: 126 IVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT 168
+ K + ++ K + + +L ER EL +
Sbjct: 147 SQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRN 189
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 30.2 bits (69), Expect = 0.51
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 65 TENQEHEVELELLREDNEQLVT--QYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
+E E +L+ +R++ + V ++E+ LR + Q+ED + K++ +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 123 L--ESIVRMLELKSKNASDHVYRLEEKEQE-LKKEYSILHER 161
+ + I ++ + V ++ + E + L +ILH R
Sbjct: 454 VTVDDIAMVVSSWTGVP---VSKIAQTETDKLLNMENILHSR 492
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.7 bits (62), Expect = 0.95
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 114 KELNSKIESLESIVRMLELKSKN--------ASDHVYRLEEKEQELKKEYSILHERYTEL 165
EL +L + LE K A+ ++ ++ +EQ+L E +L +R +L
Sbjct: 19 NELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQL 78
Query: 166 LK 167
Sbjct: 79 KH 80
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 10/33 (30%)
Query: 146 EKEQELKK-EYSILHERYTE-----L-LKTHME 171
EK Q LKK + S+ + Y + L +K ME
Sbjct: 18 EK-QALKKLQASL--KLYADDSAPALAIKATME 47
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.8 bits (63), Expect = 1.3
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 68 QEHEVELELLREDNEQLVTQYEREKQLRKAAD-------QKLFQIEDALEDDKKELNSKI 120
Q H + LL + +L + + L D ++ +++ L + +
Sbjct: 520 QSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLENDL 579
Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
+S+ + L + + EL + Y L + E LK ++ +
Sbjct: 580 KSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLKKQEGLLKNIQ 636
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.6 bits (63), Expect = 1.6
Identities = 18/104 (17%), Positives = 41/104 (39%)
Query: 35 EKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL 94
K+ +D D P + + + E E+ + +++ + K+
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS 138
K +K +++ +D+KK+L K +SL+ V + + A
Sbjct: 361 EKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAE 404
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative,
no structural genomics consortium, NESG, structural
protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Length = 119
Score = 27.6 bits (62), Expect = 1.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD---QKLFQIEDALEDDKKEL 116
+D + EVE + L ED +L + + E R+ A+ Q Q D + +L
Sbjct: 29 VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDL 88
Query: 117 NSKIESLE 124
K+ESL+
Sbjct: 89 ERKVESLQ 96
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 28.2 bits (62), Expect = 2.1
Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 122 SLESIVRMLELKSKN--------ASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYI 173
S + I+ + K + ASD + ++E + LK H + + + T + +
Sbjct: 263 SKQQILEQIVEKVGSIGAKSVFVASDKDHMIDEINEALKPYEIEAHRQEPDDMYTSLAIM 322
Query: 174 ERTKLMMGSGSS 185
R L +G+ S
Sbjct: 323 GRADLFVGNCVS 334
>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner
membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces
cerevisiae}
Length = 160
Score = 27.5 bits (61), Expect = 2.3
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 89 EREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLE 131
E K L A + + + + E ++E LE++ +L+
Sbjct: 121 ENIKNLLAEAKKNV---SSSDAREAAEAAIQVEVLENLQSVLK 160
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 27.9 bits (61), Expect = 2.3
Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 40 KYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAAD 99
+ E+ + + L+ L+++ +N+ + E E L D + ++E+ ++A +
Sbjct: 114 EKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173
Query: 100 QKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH 140
L++ + ++KK KI SL + + + +
Sbjct: 174 TDLYKRFILVLNEKKT---KIRSLHNKLLNAAQEREKDIKQ 211
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 28.0 bits (61), Expect = 2.5
Identities = 13/110 (11%), Positives = 40/110 (36%)
Query: 16 HIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELE 75
H+++ Y+ E+ +++ L+ + + ++E
Sbjct: 277 HLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVE 336
Query: 76 LLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125
+L + + E R ++ ++E+ E ++L + ++L+S
Sbjct: 337 KSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDALDS 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 26.9 bits (60), Expect = 3.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 89 EREKQLRKAADQKLF-QIEDALEDDKKELNSKIESLESIVRMLE 131
REK +R+ + F L + KK +N++I+ I+ E
Sbjct: 152 AREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTE 195
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 27.3 bits (59), Expect = 4.3
Identities = 16/126 (12%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Query: 49 LMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE--KQLRKAADQKLFQIE 106
L+ + L + + + L + Q+ + + +++ D ++
Sbjct: 573 GFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVS 632
Query: 107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELL 166
+ DD + S+ L+++V+ + + N RL+ ++++ + + Y+ LL
Sbjct: 633 KRINDD---IVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLL 689
Query: 167 KTHMEY 172
+ +
Sbjct: 690 AYYSHH 695
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 27.1 bits (61), Expect = 4.8
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA-LEDDKKELNSKIESLESIVRM 129
E E+ L E+ +L ++ERE+++ + + ++++ E + E + R
Sbjct: 436 EAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLN------RA 489
Query: 130 LELKSKNASDHVYRLEEKEQELKKEYSILHERYTE 164
EL+ +E ++L+ + TE
Sbjct: 490 AELRYGELPKLEAEVEALSEKLRGA-RFVRLEVTE 523
>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP
synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A
{Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H*
3oeh_H* 3ofn_H* 3zry_H* 3oe7_H*
Length = 138
Score = 26.2 bits (58), Expect = 5.1
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 89 EREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLE 131
E K L A + + + + E ++E LE++ +L+
Sbjct: 99 ENIKNLLAEAKKNV---SSSDAREAAEAAIQVEVLENLQSVLK 138
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.8 bits (60), Expect = 5.2
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 65 TENQEHEVELELLREDNEQLV--TQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
+E E +L+ +R++ + V ++E+ LR ++ + +ED KK K
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRD----TEQRLREQVEDTKKSWKEKQGQ 449
Query: 123 LESIV 127
S V
Sbjct: 450 ENSEV 454
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 5.3
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 67 NQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESI 126
QE E + RE E+ K+L++ ++ E KK+L E
Sbjct: 81 TQEPES-IRKWRE---------EQRKRLQELDAASKVMEQEWREKAKKDLE------EWN 124
Query: 127 VRMLELKSKNASDHVYRLEEKE 148
R E KN ++ R+ +K
Sbjct: 125 QRQSEQVEKNKINN--RIADKA 144
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 26.6 bits (59), Expect = 6.1
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 24/78 (30%)
Query: 143 RLEEKEQELK---KEYSILHER---------YTELLKTH-----MEYIERTKLMMGSGSS 185
R ++E K + ++ + + + ME MG+ +
Sbjct: 59 RRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAMEL-------MGTCAE 111
Query: 186 DRMDSRPPRLPSMGLGHI 203
+P LG +
Sbjct: 112 KLKKRMQGPIPERILGKM 129
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 26.6 bits (58), Expect = 6.5
Identities = 20/100 (20%), Positives = 37/100 (37%)
Query: 75 ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134
L +L + KQ RK Q+ + + LE+ K+L + E R E +
Sbjct: 91 NLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAA 150
Query: 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE 174
+ A + + +++K H R ++ EY
Sbjct: 151 QTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAA 190
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 26.5 bits (57), Expect = 7.1
Identities = 18/135 (13%), Positives = 46/135 (34%)
Query: 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90
+E K + + + ++ + + + E L+ + E + +
Sbjct: 418 LEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQ 477
Query: 91 EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150
Q ++++ E + E +M+E K ++ +H+ +L EK +
Sbjct: 478 TDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEN 537
Query: 151 LKKEYSILHERYTEL 165
+ + ER L
Sbjct: 538 DRVQLLKEQERTLAL 552
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 26.4 bits (59), Expect = 7.5
Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 14/103 (13%)
Query: 46 VKDLMPLVVNVLESLDLAFTENQEHEVELELLRED--------------NEQLVTQYERE 91
++ L + + D+ E + E+E L +L +
Sbjct: 3 LERLAQRLEGLGGIFDIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTF 62
Query: 92 KQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134
+ L L +E+ ++++ L ++E + L ++
Sbjct: 63 RSLESDLQGLLELMEELPAEEREALKPELEEAAKKLDELYHQT 105
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 26.4 bits (59), Expect = 7.8
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 89 EREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES-IVRMLELKSK 135
+RE +L + ++ E +KE+++ +L +VR + K
Sbjct: 307 DREAELDRVKALAAEKLLPEFEGREKEISAAYRALTKSLVRERVIAEK 354
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 26.3 bits (57), Expect = 8.2
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 31 YQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYER 90
+ K + + VK + V E+L ++ + EL+ + +N+ L YE
Sbjct: 49 GHKLYKDLKNF-LSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYEE 107
Query: 91 --EKQLRKAADQKLFQIEDALEDDKKELNSKI--ESLESIVRMLELKSKNASDHVYRLEE 146
Q + + + Q + E K + +S + ++ K + EE
Sbjct: 108 KLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAKKKDEAKTAKAEE 167
Query: 147 KEQELKKEYSILHE 160
+ + + + L++
Sbjct: 168 EFNKAQTVFEDLNQ 181
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family
member 1; tropomysoin, overlap complex, coiled-coils,
contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB:
3mud_C*
Length = 75
Score = 24.5 bits (53), Expect = 9.7
Identities = 10/61 (16%), Positives = 29/61 (47%)
Query: 66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125
+ ++++L+ D E + + E+ + + KL IE ++++ E + ++ +
Sbjct: 3 SMDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVD 62
Query: 126 I 126
I
Sbjct: 63 I 63
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein,
signaling protein; 1.44A {Saccharomyces cerevisiae} PDB:
2pko_A 2ax5_A
Length = 99
Score = 24.9 bits (54), Expect = 9.8
Identities = 9/62 (14%), Positives = 26/62 (41%)
Query: 49 LMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA 108
++ + V L LD F + + H+++++ + + + D +F +D+
Sbjct: 1 MVNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDS 60
Query: 109 LE 110
+
Sbjct: 61 IR 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.129 0.337
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,923,395
Number of extensions: 169347
Number of successful extensions: 797
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 212
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.7 bits)