RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2152
         (205 letters)



>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha, AccA {Escherichia coli
           [TaxId: 562]}
          Length = 316

 Score = 34.7 bits (79), Expect = 0.005
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 110 EDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKE 154
           E    EL +KI+SL +  R  E    N  + V+RL EK  EL ++
Sbjct: 6   EQPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRK 50


>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 236

 Score = 27.1 bits (60), Expect = 1.2
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 48  DLMPLVVNVLESLDLAFTENQEHEVEL--ELLREDNEQLVTQYEREKQLRKAADQKLFQI 105
             + +V    E L  A   N +  +EL   +       L+T   R + + +       ++
Sbjct: 170 TFLQIVGVCTEELHSAQQWNGQGILELLRTVPIAGGPWLITDMRRGETIFEIDPHLQERV 229

Query: 106 EDALEDD 112
           +  +E D
Sbjct: 230 DKGIETD 236


>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 83

 Score = 25.6 bits (56), Expect = 1.6
 Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 4/77 (5%)

Query: 89  EREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE 148
             E++ R         + D++   + E  S+ + L+     +    +      +  ++  
Sbjct: 8   ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYI----QYMRRKNHTHQQDI 63

Query: 149 QELKKEYSILHERYTEL 165
            +LK++ ++L ++   L
Sbjct: 64  DDLKRQNALLEQQVRAL 80


>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
           protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
          Length = 340

 Score = 27.0 bits (58), Expect = 2.0
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 73  ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALED 111
           EL+ LR++ EQL  Q    +  +  AD  L QI + ++ 
Sbjct: 3   ELDQLRQEAEQLKNQIRDAR--KACADATLSQITNNIDP 39


>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 112

 Score = 25.6 bits (56), Expect = 2.3
 Identities = 10/61 (16%), Positives = 26/61 (42%)

Query: 91  EKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE 150
            ++  + AD  L  + D+LE+  +     I  +E    ++ L+      +V   +   ++
Sbjct: 10  LEKAHEEADDYLDHLLDSLEELSEAHPDCIPDVELSHGVMTLEIPAFGTYVINKQPPNKQ 69

Query: 151 L 151
           +
Sbjct: 70  I 70


>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
           (residues 410-1202) {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 760

 Score = 26.3 bits (57), Expect = 3.0
 Identities = 21/152 (13%), Positives = 51/152 (33%), Gaps = 6/152 (3%)

Query: 32  QEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYERE 91
           ++      +++ +     +  +  ++E  +L  T    + +  EL      +   + +  
Sbjct: 591 KDHMSERLQWEVEKYSFQVKFIKMIIE-KELTVTNKPRNAIIQELENLGFPRFNKEGKPY 649

Query: 92  KQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASD----HVYRL-EE 146
                    +          D+++  S  E  E+++   E             ++ L +E
Sbjct: 650 YGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKE 709

Query: 147 KEQELKKEYSILHERYTELLKTHMEYIERTKL 178
           + Q+L K+          LLK   + I  T L
Sbjct: 710 RYQKLLKQKQEKETELENLLKLSAKDIWNTDL 741


>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 173

 Score = 25.2 bits (55), Expect = 5.3
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 106 EDALEDD------KKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159
           ED ++D        +++    ++L+ I+       +   D+  + +  EQ  +  Y ++H
Sbjct: 21  EDYIQDKFNLTGLNEQVPHYRQALDMILD--LEPDEELEDNPNQSDLIEQAAEMLYGLIH 78

Query: 160 ERY 162
            RY
Sbjct: 79  ARY 81


>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 310

 Score = 24.9 bits (54), Expect = 6.9
 Identities = 10/71 (14%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 105 IEDALEDDKKELNSKIESLESIVRMLELKSKNASD-HVYRLEEKEQELKKEYSILHERYT 163
           +E+A E   ++   + +  +      +   +   +    ++E  + E K  + ++ +R+ 
Sbjct: 179 LEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFI 238

Query: 164 ELLKTHMEYIE 174
            +L  H+   E
Sbjct: 239 MILTEHLVRCE 249


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 24.9 bits (54), Expect = 9.1
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 12/68 (17%)

Query: 100 QKLFQIE-DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE-QELKKEYSI 157
           QKL  +E + L D+ KEL  +I  L  I     L S    D +  +  +E + +++++  
Sbjct: 435 QKLTGLEHEKLLDEYKELLDQIAELLRI-----LGSA---DRLMEVIREELELVREQFGD 486

Query: 158 LHERYTEL 165
             +R TE+
Sbjct: 487 --KRRTEI 492


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.129    0.337 

Gapped
Lambda     K      H
   0.267   0.0600    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 693,365
Number of extensions: 31476
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 58
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.7 bits)