BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2153
         (325 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RJO|A Chain A, Crystal Structure Of Twin-Arginine Translocation Pathway
           Signal Protein From Burkholderia Phytofirmans
          Length = 332

 Score = 28.5 bits (62), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 264 HGHRDAVKFFVSVPGSGGLSAATSVPQDCPVIENVSGTEKPPSMLVMSGGEGYIDFRIA 322
           +G   A + F S  G GG+ A   +  + P IE  +G +   + L    G   +DF++A
Sbjct: 121 YGEETATQLFKSXGGKGGVVALGGIFSNVPAIERKAGLD---AALKKFPGIQLLDFQVA 176


>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
           Pullulanase Complexed With Maltose
 pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
           Pullulanase Complexed With Maltotriose
 pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
           Pullulanase Complexed With Maltotetraose
          Length = 1083

 Score = 27.7 bits (60), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 1   MEYPHPTPYPLNKILDTALPPVHVQGRVV--CALADGSVAIFRRGPDGQWDLSKYHTVTL 58
           M +PH   YP  K+ D       +QG  V   A +DG ++   +          Y     
Sbjct: 234 MRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAE 293

Query: 59  GLPHHSVRSLAAVYNKVWCGYKNKIHVV----DPKSLKSFDAHP-RRESQVRQMTWAGDG 113
            L + +  + + V  +VW     ++ +V    D K + S   HP  R+S     +W G  
Sbjct: 294 ALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIAS---HPMTRDSASGAWSWQGGS 350

Query: 114 VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGW 173
                     + +Y+  + +  Q    +PY   +     +   V     L ++ + P GW
Sbjct: 351 DLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVD----LNDSALKPEGW 406

Query: 174 ------YANNPADILESFTVCQSHLLCIAS 197
                 +A      L   T+ +SH+  +++
Sbjct: 407 DGLTMPHAQKTKADLAKMTIHESHIRDLSA 436


>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
           Pullulanase Complexed With Glucose
          Length = 920

 Score = 27.7 bits (60), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 1   MEYPHPTPYPLNKILDTALPPVHVQGRVV--CALADGSVAIFRRGPDGQWDLSKYHTVTL 58
           M +PH   YP  K+ D       +QG  V   A +DG ++   +          Y     
Sbjct: 71  MRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAE 130

Query: 59  GLPHHSVRSLAAVYNKVWCGYKNKIHVV----DPKSLKSFDAHP-RRESQVRQMTWAGDG 113
            L + +  + + V  +VW     ++ +V    D K + S   HP  R+S     +W G  
Sbjct: 131 ALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIAS---HPMTRDSASGAWSWQGGS 187

Query: 114 VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGW 173
                     + +Y+  + +  Q    +PY   +     +   V     L ++ + P GW
Sbjct: 188 DLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVD----LNDSALKPEGW 243

Query: 174 ------YANNPADILESFTVCQSHLLCIAS 197
                 +A      L   T+ +SH+  +++
Sbjct: 244 DGLTMPHAQKTKADLAKMTIHESHIRDLSA 273


>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
           Pullulanase Complexed With Isomaltose
          Length = 922

 Score = 27.7 bits (60), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 20/210 (9%)

Query: 1   MEYPHPTPYPLNKILDTALPPVHVQGRVV--CALADGSVAIFRRGPDGQWDLSKYHTVTL 58
           M +PH   YP  K+ D       +QG  V   A +DG ++   +          Y     
Sbjct: 73  MRFPHLASYPAFKLPDDVNVDELLQGETVAIAAESDGILSSATQVQTAGVLDDTYAAAAE 132

Query: 59  GLPHHSVRSLAAVYNKVWCGYKNKIHVV----DPKSLKSFDAHP-RRESQVRQMTWAGDG 113
            L + +  + + V  +VW     ++ +V    D K + S   HP  R+S     +W G  
Sbjct: 133 ALSYGAQLTDSGVTFRVWAPTAQQVELVIYSADKKVIAS---HPMTRDSASGAWSWQGGS 189

Query: 114 VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGW 173
                     + +Y+  + +  Q    +PY   +     +   V     L ++ + P GW
Sbjct: 190 DLKGAFYRYAMTVYHPQSRKVEQYEVTDPYAHSLSTNSEYSQVVD----LNDSALKPEGW 245

Query: 174 ------YANNPADILESFTVCQSHLLCIAS 197
                 +A      L   T+ +SH+  +++
Sbjct: 246 DGLTMPHAQKTKADLAKMTIHESHIRDLSA 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,396,165
Number of Sequences: 62578
Number of extensions: 414313
Number of successful extensions: 784
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 6
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)