Query psy2153
Match_columns 325
No_of_seqs 156 out of 236
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 17:39:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3522|consensus 100.0 1.3E-38 2.8E-43 330.3 12.7 284 16-323 582-904 (925)
2 KOG3522|consensus 99.4 4.3E-13 9.3E-18 141.1 7.0 129 16-148 669-800 (925)
3 KOG2077|consensus 98.1 1.3E-06 2.8E-11 89.9 2.2 35 173-207 660-694 (832)
4 cd00200 WD40 WD40 domain, foun 97.9 0.0011 2.5E-08 57.0 17.3 123 7-139 126-258 (289)
5 cd00200 WD40 WD40 domain, foun 97.6 0.004 8.6E-08 53.6 15.1 115 15-139 9-132 (289)
6 KOG0301|consensus 97.6 0.00095 2.1E-08 70.4 12.9 177 21-230 64-282 (745)
7 KOG1036|consensus 97.5 0.0026 5.6E-08 61.8 13.9 124 3-136 42-169 (323)
8 KOG0646|consensus 97.4 0.0074 1.6E-07 61.4 16.2 126 10-143 76-219 (476)
9 KOG1539|consensus 97.3 0.00072 1.6E-08 72.5 8.7 125 17-147 452-623 (910)
10 PTZ00421 coronin; Provisional 97.2 0.021 4.6E-07 58.9 17.4 123 15-141 75-209 (493)
11 KOG0306|consensus 97.2 0.0031 6.6E-08 67.4 11.2 123 10-142 503-634 (888)
12 KOG2110|consensus 97.0 0.012 2.5E-07 58.6 13.0 118 11-139 83-213 (391)
13 TIGR03300 assembly_YfgL outer 97.0 0.017 3.7E-07 56.0 14.1 128 5-142 39-175 (377)
14 PRK11138 outer membrane biogen 97.0 0.03 6.5E-07 55.1 15.7 111 20-141 251-364 (394)
15 TIGR03300 assembly_YfgL outer 96.8 0.05 1.1E-06 52.7 15.8 110 21-141 237-349 (377)
16 PLN00181 protein SPA1-RELATED; 96.8 0.75 1.6E-05 49.7 25.4 123 15-141 483-617 (793)
17 PRK11138 outer membrane biogen 96.7 0.035 7.7E-07 54.6 13.8 135 5-141 43-189 (394)
18 KOG2111|consensus 96.5 0.068 1.5E-06 52.5 13.9 123 7-138 86-220 (346)
19 KOG0274|consensus 96.5 0.02 4.3E-07 59.9 11.0 127 4-141 319-452 (537)
20 PF13360 PQQ_2: PQQ-like domai 96.5 0.19 4E-06 44.7 15.5 128 5-142 12-152 (238)
21 KOG0274|consensus 96.4 0.025 5.5E-07 59.1 11.2 96 47-145 315-416 (537)
22 KOG0291|consensus 96.4 0.05 1.1E-06 58.5 13.0 132 2-143 293-435 (893)
23 KOG0276|consensus 96.3 0.018 4E-07 60.7 9.3 108 15-132 13-129 (794)
24 PF02239 Cytochrom_D1: Cytochr 96.3 0.032 6.9E-07 55.4 10.7 125 17-144 220-361 (369)
25 PF13360 PQQ_2: PQQ-like domai 96.3 0.06 1.3E-06 47.9 11.4 127 6-139 56-200 (238)
26 KOG1036|consensus 96.3 0.079 1.7E-06 51.8 12.7 108 15-131 13-125 (323)
27 KOG0305|consensus 96.3 0.18 3.8E-06 52.3 16.0 215 15-279 217-443 (484)
28 KOG0281|consensus 96.2 0.012 2.6E-07 58.6 7.0 60 73-136 330-394 (499)
29 TIGR02658 TTQ_MADH_Hv methylam 96.2 0.11 2.3E-06 51.8 13.4 137 5-148 137-305 (352)
30 KOG0294|consensus 96.0 0.47 1E-05 46.9 16.4 217 4-281 31-263 (362)
31 TIGR03866 PQQ_ABC_repeats PQQ- 96.0 0.27 5.8E-06 44.2 14.0 123 13-141 154-290 (300)
32 KOG0316|consensus 95.9 0.092 2E-06 50.2 10.9 128 6-142 135-269 (307)
33 PTZ00420 coronin; Provisional 95.9 0.3 6.6E-06 51.5 15.9 123 15-140 74-207 (568)
34 KOG0646|consensus 95.5 0.11 2.3E-06 53.2 10.4 123 17-148 176-326 (476)
35 KOG0266|consensus 95.5 0.22 4.8E-06 50.5 13.0 109 17-135 205-323 (456)
36 KOG2055|consensus 95.5 0.22 4.8E-06 51.1 12.5 137 7-148 196-351 (514)
37 KOG0649|consensus 95.5 0.12 2.6E-06 49.6 10.0 119 17-141 64-197 (325)
38 KOG0284|consensus 95.3 0.034 7.3E-07 56.2 6.0 113 12-134 93-214 (464)
39 KOG0291|consensus 95.1 0.31 6.8E-06 52.6 12.8 128 16-145 351-524 (893)
40 KOG1274|consensus 95.1 0.19 4.1E-06 55.0 11.2 116 14-139 55-177 (933)
41 KOG0266|consensus 95.0 1.5 3.3E-05 44.5 17.0 186 15-229 159-357 (456)
42 PF00780 CNH: CNH domain; Int 95.0 1.2 2.6E-05 41.0 15.0 128 5-143 127-268 (275)
43 PRK11028 6-phosphogluconolacto 94.9 0.95 2.1E-05 42.9 14.6 129 9-141 73-220 (330)
44 PF03178 CPSF_A: CPSF A subuni 94.8 0.53 1.2E-05 45.0 12.7 122 5-129 11-158 (321)
45 KOG0271|consensus 94.8 0.11 2.5E-06 52.3 8.1 114 17-139 159-285 (480)
46 TIGR03866 PQQ_ABC_repeats PQQ- 94.7 0.91 2E-05 40.7 13.0 103 27-141 2-114 (300)
47 PF03178 CPSF_A: CPSF A subuni 94.4 0.89 1.9E-05 43.4 13.1 134 6-148 79-231 (321)
48 KOG0306|consensus 94.4 0.2 4.4E-06 54.0 9.2 116 12-137 62-186 (888)
49 KOG0276|consensus 94.4 2.1 4.6E-05 45.8 16.3 76 63-141 184-268 (794)
50 KOG0310|consensus 94.3 0.6 1.3E-05 48.1 12.0 114 28-148 169-286 (487)
51 PF13570 PQQ_3: PQQ-like domai 94.3 0.077 1.7E-06 35.7 4.0 37 7-43 2-39 (40)
52 PF02239 Cytochrom_D1: Cytochr 94.3 0.37 8E-06 47.9 10.4 105 26-142 6-120 (369)
53 COG1520 FOG: WD40-like repeat 94.2 1.2 2.7E-05 43.4 13.9 133 3-143 40-184 (370)
54 cd00216 PQQ_DH Dehydrogenases 94.2 0.87 1.9E-05 46.6 13.3 138 4-141 37-194 (488)
55 PLN00181 protein SPA1-RELATED; 94.2 1.7 3.7E-05 47.0 16.1 106 16-132 576-692 (793)
56 KOG2096|consensus 94.0 0.58 1.3E-05 46.5 10.9 122 16-142 87-228 (420)
57 PF14783 BBS2_Mid: Ciliary BBS 94.0 0.11 2.3E-06 44.0 5.0 69 3-81 30-105 (111)
58 KOG1446|consensus 93.9 2.3 4.9E-05 41.8 14.6 122 14-143 13-143 (311)
59 PTZ00420 coronin; Provisional 93.9 1.8 4E-05 45.7 15.1 124 15-147 125-266 (568)
60 KOG3881|consensus 93.9 2.7 5.9E-05 42.5 15.4 134 2-141 88-246 (412)
61 PF00780 CNH: CNH domain; Int 93.6 2.1 4.6E-05 39.4 13.5 63 20-91 2-66 (275)
62 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.6 1.1 2.4E-05 46.7 12.8 137 6-143 47-202 (527)
63 TIGR02658 TTQ_MADH_Hv methylam 93.4 1.2 2.7E-05 44.4 12.2 109 26-141 13-147 (352)
64 KOG3881|consensus 93.1 0.75 1.6E-05 46.4 10.1 130 13-148 200-338 (412)
65 KOG0308|consensus 93.0 1.3 2.8E-05 47.3 12.2 124 15-141 117-254 (735)
66 KOG0286|consensus 93.0 2 4.4E-05 42.2 12.5 113 17-139 57-183 (343)
67 KOG0315|consensus 92.9 2.1 4.6E-05 41.4 12.4 121 10-140 119-254 (311)
68 cd00216 PQQ_DH Dehydrogenases 92.9 2.1 4.5E-05 43.9 13.4 104 27-142 303-436 (488)
69 KOG2048|consensus 92.8 2 4.4E-05 45.9 13.3 136 3-142 232-423 (691)
70 KOG0278|consensus 92.8 1.4 3.1E-05 42.6 11.2 122 7-135 176-302 (334)
71 KOG0295|consensus 92.6 0.41 8.9E-06 47.9 7.4 126 14-143 107-278 (406)
72 KOG0281|consensus 92.5 0.38 8.3E-06 48.2 7.1 120 16-146 198-331 (499)
73 KOG2695|consensus 92.4 0.77 1.7E-05 46.0 9.0 123 14-142 251-388 (425)
74 KOG0294|consensus 92.0 1 2.2E-05 44.5 9.3 80 65-147 211-303 (362)
75 KOG0318|consensus 92.0 2.4 5.1E-05 44.5 12.3 112 10-130 482-602 (603)
76 KOG2106|consensus 91.9 3.9 8.4E-05 42.9 13.7 120 5-134 397-525 (626)
77 KOG0263|consensus 91.7 1.1 2.4E-05 48.3 9.9 109 17-135 537-654 (707)
78 KOG0277|consensus 91.6 1.7 3.8E-05 42.0 10.1 109 8-132 53-180 (311)
79 KOG0643|consensus 91.6 3.6 7.7E-05 40.2 12.2 141 6-147 84-237 (327)
80 KOG1274|consensus 91.5 2.7 5.7E-05 46.5 12.5 124 7-133 130-265 (933)
81 KOG4499|consensus 91.4 1.5 3.3E-05 42.2 9.5 85 106-207 216-304 (310)
82 PRK11028 6-phosphogluconolacto 91.3 5.3 0.00012 37.8 13.3 124 7-136 26-162 (330)
83 PTZ00421 coronin; Provisional 91.3 5.2 0.00011 41.5 14.1 119 15-138 168-298 (493)
84 KOG0647|consensus 91.2 2.1 4.5E-05 42.3 10.3 120 16-144 28-159 (347)
85 KOG2444|consensus 91.1 0.71 1.5E-05 43.7 6.9 113 21-141 66-188 (238)
86 KOG0318|consensus 91.1 6 0.00013 41.6 14.0 114 27-148 162-283 (603)
87 KOG0271|consensus 91.0 1 2.3E-05 45.6 8.3 108 26-139 337-448 (480)
88 KOG2048|consensus 90.9 26 0.00057 37.8 18.8 191 15-230 25-227 (691)
89 COG3292 Predicted periplasmic 90.5 0.37 7.9E-06 50.9 4.9 58 72-131 175-234 (671)
90 KOG0285|consensus 90.5 1.2 2.6E-05 44.8 8.2 128 8-138 260-397 (460)
91 KOG0295|consensus 90.4 5.4 0.00012 40.2 12.6 152 45-226 217-394 (406)
92 KOG0279|consensus 90.2 3.6 7.8E-05 40.2 10.9 117 15-141 148-273 (315)
93 KOG0275|consensus 90.2 0.48 1E-05 47.2 5.1 119 13-141 261-389 (508)
94 KOG0289|consensus 90.1 8.8 0.00019 39.6 14.1 119 8-138 213-341 (506)
95 KOG2106|consensus 90.0 5 0.00011 42.1 12.4 126 4-131 315-478 (626)
96 KOG0319|consensus 89.7 4.5 9.8E-05 43.8 12.1 62 72-133 31-95 (775)
97 KOG1408|consensus 89.7 3.1 6.8E-05 45.3 10.9 117 17-134 262-414 (1080)
98 PF12894 Apc4_WD40: Anaphase-p 89.6 0.97 2.1E-05 32.3 5.1 44 5-48 1-46 (47)
99 PF11715 Nup160: Nucleoporin N 89.6 0.2 4.4E-06 51.5 2.1 97 24-141 157-259 (547)
100 KOG2111|consensus 89.4 6 0.00013 39.3 11.9 125 2-131 119-257 (346)
101 KOG1188|consensus 89.3 1.4 3.1E-05 43.9 7.6 127 73-199 41-175 (376)
102 KOG0283|consensus 89.2 3.8 8.3E-05 44.4 11.3 125 5-133 441-579 (712)
103 KOG0313|consensus 88.8 1.8 3.9E-05 43.7 8.0 120 16-149 261-394 (423)
104 KOG0310|consensus 88.7 7.4 0.00016 40.4 12.4 110 17-133 112-228 (487)
105 KOG0273|consensus 88.6 5.4 0.00012 41.4 11.4 108 15-132 276-391 (524)
106 KOG0289|consensus 88.6 7.4 0.00016 40.2 12.2 78 63-143 348-432 (506)
107 KOG2110|consensus 88.6 6.2 0.00014 39.8 11.5 144 63-227 88-237 (391)
108 KOG0282|consensus 87.8 2.5 5.3E-05 43.8 8.4 133 8-140 292-472 (503)
109 KOG2096|consensus 87.5 3.3 7.2E-05 41.3 8.8 115 16-131 279-403 (420)
110 KOG0305|consensus 87.1 3.5 7.6E-05 43.0 9.2 132 7-148 250-394 (484)
111 PF09910 DUF2139: Uncharacteri 87.0 11 0.00025 37.2 12.0 52 68-120 209-268 (339)
112 COG3292 Predicted periplasmic 86.8 5.4 0.00012 42.5 10.4 22 209-230 419-441 (671)
113 KOG0296|consensus 86.7 4.2 9.1E-05 41.0 9.1 89 30-129 303-397 (399)
114 KOG0285|consensus 86.6 2.8 6.1E-05 42.3 7.8 87 47-137 219-314 (460)
115 KOG1539|consensus 86.4 12 0.00027 41.2 13.0 101 19-131 39-143 (910)
116 KOG1645|consensus 86.4 3.6 7.8E-05 42.0 8.5 24 120-143 409-432 (463)
117 KOG1273|consensus 86.2 11 0.00024 37.7 11.5 120 6-135 97-231 (405)
118 KOG0973|consensus 86.0 11 0.00024 42.2 12.6 119 16-138 70-209 (942)
119 PF05096 Glu_cyclase_2: Glutam 85.5 5.7 0.00012 38.3 9.1 133 6-146 78-219 (264)
120 PF00400 WD40: WD domain, G-be 85.0 3.4 7.4E-05 26.5 5.3 33 93-128 6-39 (39)
121 KOG0645|consensus 85.0 41 0.00089 33.0 15.3 121 17-142 63-195 (312)
122 KOG0268|consensus 84.9 4.2 9.1E-05 41.1 8.1 124 3-132 174-304 (433)
123 KOG0284|consensus 84.9 2.2 4.8E-05 43.5 6.3 118 16-140 139-262 (464)
124 KOG1445|consensus 84.2 3.9 8.5E-05 44.1 7.9 111 24-139 639-760 (1012)
125 KOG4649|consensus 84.1 9.8 0.00021 37.3 10.0 200 2-229 39-260 (354)
126 KOG4547|consensus 83.8 12 0.00026 39.5 11.1 108 27-141 72-183 (541)
127 KOG0265|consensus 83.7 14 0.0003 36.6 10.9 84 50-138 80-171 (338)
128 KOG1273|consensus 83.5 3.4 7.4E-05 41.1 6.8 74 72-148 35-113 (405)
129 TIGR03075 PQQ_enz_alc_DH PQQ-d 83.1 6.9 0.00015 40.8 9.3 68 21-92 116-192 (527)
130 KOG2445|consensus 82.7 12 0.00026 37.2 10.1 124 16-144 14-158 (361)
131 KOG0639|consensus 82.5 1.2 2.6E-05 46.6 3.4 94 47-144 491-595 (705)
132 KOG4378|consensus 82.0 16 0.00035 38.5 11.1 161 47-230 105-274 (673)
133 KOG0299|consensus 81.4 16 0.00034 37.9 10.8 133 15-148 244-432 (479)
134 KOG1034|consensus 81.1 16 0.00035 36.6 10.4 108 25-136 54-172 (385)
135 KOG0273|consensus 81.0 21 0.00045 37.3 11.5 121 16-139 360-491 (524)
136 KOG0278|consensus 80.6 16 0.00034 35.6 9.9 110 17-138 145-262 (334)
137 KOG2321|consensus 80.2 8.1 0.00017 41.2 8.4 78 66-146 137-221 (703)
138 KOG0319|consensus 80.1 12 0.00026 40.8 9.8 118 17-142 465-589 (775)
139 KOG0296|consensus 79.6 8.1 0.00018 39.0 7.9 72 2-80 314-388 (399)
140 KOG2114|consensus 79.4 34 0.00074 38.1 13.1 115 24-143 136-256 (933)
141 KOG0279|consensus 79.4 64 0.0014 31.8 13.7 160 47-230 131-307 (315)
142 KOG0641|consensus 79.3 63 0.0014 31.2 13.8 121 16-139 90-221 (350)
143 KOG0303|consensus 79.3 17 0.00037 37.3 10.1 109 16-138 82-211 (472)
144 KOG0316|consensus 79.2 15 0.00032 35.6 9.1 115 16-142 18-145 (307)
145 KOG0649|consensus 79.1 27 0.00058 34.0 10.9 136 4-148 95-253 (325)
146 KOG0313|consensus 78.8 22 0.00047 36.2 10.6 132 3-142 93-237 (423)
147 KOG3914|consensus 78.6 14 0.00031 37.5 9.3 134 7-148 99-241 (390)
148 TIGR03074 PQQ_membr_DH membran 78.3 32 0.0007 37.9 12.7 120 22-141 191-355 (764)
149 KOG4714|consensus 77.8 14 0.0003 36.1 8.6 109 19-131 138-255 (319)
150 KOG0647|consensus 77.4 36 0.00078 33.8 11.5 127 5-137 146-288 (347)
151 KOG1332|consensus 77.4 9.2 0.0002 37.0 7.3 123 5-130 91-241 (299)
152 KOG0307|consensus 77.3 4.3 9.2E-05 45.7 5.7 117 11-140 157-294 (1049)
153 PF08662 eIF2A: Eukaryotic tra 77.2 34 0.00073 30.7 10.7 98 35-140 37-143 (194)
154 TIGR02276 beta_rpt_yvtn 40-res 76.6 6.3 0.00014 25.8 4.5 33 110-142 2-34 (42)
155 KOG0264|consensus 76.4 22 0.00048 36.5 10.0 106 25-134 190-307 (422)
156 KOG0286|consensus 76.3 85 0.0018 31.2 13.6 133 7-140 88-227 (343)
157 KOG1408|consensus 76.1 25 0.00054 38.7 10.7 127 6-137 537-678 (1080)
158 KOG0640|consensus 76.0 8.9 0.00019 38.3 6.9 122 16-142 173-303 (430)
159 PF10282 Lactonase: Lactonase, 75.4 70 0.0015 31.0 13.1 122 17-140 145-289 (345)
160 PHA02713 hypothetical protein; 75.2 26 0.00056 36.8 10.7 92 36-133 433-536 (557)
161 KOG0299|consensus 75.1 12 0.00026 38.7 7.8 99 40-138 120-240 (479)
162 KOG2394|consensus 74.7 19 0.0004 38.3 9.2 29 15-43 219-250 (636)
163 PF08450 SGL: SMP-30/Gluconola 74.1 68 0.0015 29.0 12.5 118 5-130 30-164 (246)
164 KOG1900|consensus 73.8 37 0.00081 39.4 11.9 160 15-230 178-343 (1311)
165 KOG0282|consensus 73.3 4.2 9E-05 42.2 4.1 68 72-142 226-300 (503)
166 PLN02919 haloacid dehalogenase 73.3 79 0.0017 36.1 14.5 68 72-139 814-897 (1057)
167 KOG0268|consensus 73.2 20 0.00043 36.4 8.7 188 8-229 140-338 (433)
168 COG3391 Uncharacterized conser 72.7 98 0.0021 30.7 13.6 123 7-137 107-246 (381)
169 KOG2445|consensus 72.5 53 0.0011 32.9 11.2 143 2-148 148-339 (361)
170 KOG0270|consensus 72.3 30 0.00065 35.8 9.8 113 15-133 329-452 (463)
171 KOG0277|consensus 72.2 14 0.00031 35.9 7.1 117 17-140 13-145 (311)
172 PF10282 Lactonase: Lactonase, 70.8 65 0.0014 31.2 11.6 125 17-143 88-239 (345)
173 PF08596 Lgl_C: Lethal giant l 70.6 51 0.0011 33.4 11.2 42 101-142 86-127 (395)
174 PF05096 Glu_cyclase_2: Glutam 70.4 36 0.00079 32.9 9.6 114 6-124 120-255 (264)
175 KOG1517|consensus 69.5 41 0.00088 38.6 10.7 123 6-134 1096-1243(1387)
176 PF04053 Coatomer_WDAD: Coatom 68.3 35 0.00075 35.1 9.5 107 18-147 35-150 (443)
177 KOG2055|consensus 67.9 59 0.0013 34.0 10.8 116 8-136 249-380 (514)
178 PF00400 WD40: WD domain, G-be 67.4 15 0.00033 23.3 4.5 35 7-41 2-39 (39)
179 KOG0269|consensus 67.3 12 0.00026 41.1 6.0 59 25-91 189-252 (839)
180 KOG4283|consensus 67.1 19 0.00042 35.8 7.0 34 111-144 113-146 (397)
181 KOG0315|consensus 67.1 1.3E+02 0.0028 29.5 12.3 84 48-131 110-198 (311)
182 KOG0640|consensus 67.0 1.4E+02 0.003 30.2 12.8 175 17-200 218-407 (430)
183 KOG0275|consensus 66.5 79 0.0017 32.0 11.1 111 25-141 360-478 (508)
184 KOG0772|consensus 64.2 70 0.0015 34.1 10.6 131 9-142 158-312 (641)
185 smart00564 PQQ beta-propeller 64.1 13 0.00029 23.1 3.7 23 22-44 3-25 (33)
186 KOG0300|consensus 63.9 26 0.00057 35.2 7.3 85 46-131 339-429 (481)
187 KOG0302|consensus 63.1 7.5 0.00016 39.5 3.4 53 79-134 232-292 (440)
188 PF08662 eIF2A: Eukaryotic tra 62.4 1.2E+02 0.0025 27.2 12.0 122 8-142 50-190 (194)
189 PF08596 Lgl_C: Lethal giant l 62.4 60 0.0013 32.8 9.8 124 17-142 137-302 (395)
190 PF04762 IKI3: IKI3 family; I 62.1 2E+02 0.0042 32.6 14.5 50 4-53 415-466 (928)
191 KOG0263|consensus 61.8 27 0.00059 38.0 7.5 87 46-136 518-613 (707)
192 PF08450 SGL: SMP-30/Gluconola 61.0 1.3E+02 0.0028 27.2 13.5 96 26-130 12-123 (246)
193 KOG1446|consensus 60.7 1.8E+02 0.0039 28.9 16.6 95 47-143 126-230 (311)
194 KOG0301|consensus 60.6 34 0.00074 37.2 7.9 111 63-186 180-302 (745)
195 KOG0974|consensus 60.4 96 0.0021 35.2 11.4 132 24-166 98-238 (967)
196 KOG1445|consensus 60.3 39 0.00084 36.9 8.2 83 56-138 122-209 (1012)
197 KOG1332|consensus 60.2 97 0.0021 30.2 10.1 106 23-132 21-136 (299)
198 COG4946 Uncharacterized protei 59.9 1.1E+02 0.0024 32.4 11.2 101 25-135 371-482 (668)
199 KOG2321|consensus 59.8 61 0.0013 34.9 9.4 65 17-91 230-296 (703)
200 PF14783 BBS2_Mid: Ciliary BBS 59.6 67 0.0014 27.2 8.0 61 65-129 2-70 (111)
201 KOG0293|consensus 59.3 38 0.00081 35.1 7.6 111 21-139 362-479 (519)
202 KOG0283|consensus 57.8 7.1 0.00015 42.5 2.4 63 82-147 353-415 (712)
203 KOG0973|consensus 57.6 54 0.0012 37.0 9.0 91 36-133 246-358 (942)
204 KOG0293|consensus 56.5 57 0.0012 33.8 8.4 111 12-132 392-515 (519)
205 PLN02153 epithiospecifier prot 55.4 2E+02 0.0043 27.6 12.4 53 67-119 188-259 (341)
206 KOG0639|consensus 54.5 23 0.00049 37.5 5.2 101 24-134 520-626 (705)
207 KOG0265|consensus 54.3 2E+02 0.0044 28.7 11.4 133 2-137 76-253 (338)
208 KOG2139|consensus 53.7 81 0.0018 32.3 8.8 102 28-136 113-232 (445)
209 KOG0267|consensus 52.9 24 0.00052 38.6 5.3 120 7-139 52-193 (825)
210 KOG1517|consensus 52.8 1E+02 0.0022 35.7 10.1 103 24-131 1220-1334(1387)
211 KOG1272|consensus 52.3 49 0.0011 34.7 7.2 56 82-140 274-333 (545)
212 KOG1407|consensus 52.2 1.5E+02 0.0032 29.2 10.0 90 1-98 174-271 (313)
213 KOG1912|consensus 52.1 18 0.0004 40.0 4.3 107 27-141 439-562 (1062)
214 KOG1188|consensus 50.9 88 0.0019 31.6 8.5 135 7-147 61-217 (376)
215 smart00320 WD40 WD40 repeats. 50.8 37 0.0008 18.9 3.9 27 15-41 12-40 (40)
216 PF11768 DUF3312: Protein of u 50.8 92 0.002 33.2 9.1 64 64-130 261-329 (545)
217 KOG2063|consensus 50.3 33 0.00072 38.4 6.1 79 13-93 13-100 (877)
218 PHA03098 kelch-like protein; P 49.5 3.1E+02 0.0066 28.1 12.9 122 6-133 370-514 (534)
219 COG1520 FOG: WD40-like repeat 49.4 2.6E+02 0.0056 27.2 12.9 132 5-141 130-279 (370)
220 COG3391 Uncharacterized conser 49.3 2.8E+02 0.006 27.5 12.9 104 25-136 85-196 (381)
221 KOG1310|consensus 49.2 71 0.0015 34.3 7.9 92 47-142 76-191 (758)
222 PF04841 Vps16_N: Vps16, N-ter 48.5 2E+02 0.0043 29.0 10.9 120 18-141 130-257 (410)
223 KOG1409|consensus 47.9 1.8E+02 0.0039 29.6 10.1 35 99-133 195-230 (404)
224 COG3823 Glutamine cyclotransfe 47.6 76 0.0016 30.4 7.1 114 21-141 51-169 (262)
225 KOG1963|consensus 47.5 4.5E+02 0.0097 29.4 14.3 197 19-228 211-418 (792)
226 KOG0264|consensus 47.4 1.5E+02 0.0033 30.6 9.7 103 25-136 239-353 (422)
227 KOG1920|consensus 46.5 2.2E+02 0.0047 33.3 11.5 116 16-141 69-239 (1265)
228 PRK02888 nitrous-oxide reducta 46.3 1.9E+02 0.0041 31.5 10.7 111 27-141 290-425 (635)
229 PF14836 Ubiquitin_3: Ubiquiti 46.3 8 0.00017 31.5 0.5 20 30-49 67-87 (88)
230 KOG4378|consensus 45.9 2.8E+02 0.0061 29.7 11.5 125 16-147 122-256 (673)
231 KOG3617|consensus 45.9 1E+02 0.0022 35.0 8.6 34 13-46 301-336 (1416)
232 KOG1963|consensus 45.5 48 0.001 36.7 6.2 74 73-147 29-107 (792)
233 TIGR03074 PQQ_membr_DH membran 44.6 91 0.002 34.5 8.3 71 69-140 191-288 (764)
234 KOG0322|consensus 44.3 1.1E+02 0.0023 30.2 7.8 112 13-128 203-321 (323)
235 KOG0292|consensus 43.9 80 0.0017 35.8 7.6 111 17-138 11-131 (1202)
236 KOG0308|consensus 43.7 1.3E+02 0.0028 32.8 8.9 183 18-230 76-279 (735)
237 KOG0288|consensus 43.1 2.8E+02 0.0061 28.8 10.8 88 47-137 326-424 (459)
238 KOG1645|consensus 43.0 50 0.0011 34.1 5.5 116 75-201 169-293 (463)
239 KOG1587|consensus 42.8 1.9E+02 0.0042 30.8 10.1 107 17-129 349-471 (555)
240 KOG1275|consensus 42.4 83 0.0018 35.7 7.4 114 26-150 149-276 (1118)
241 PHA02713 hypothetical protein; 42.1 3.8E+02 0.0081 28.2 12.2 105 19-131 345-489 (557)
242 KOG0771|consensus 41.5 2.6E+02 0.0056 28.8 10.3 163 81-278 166-335 (398)
243 PF06433 Me-amine-dh_H: Methyl 41.4 1.5E+02 0.0033 29.8 8.6 135 6-145 128-292 (342)
244 PHA03098 kelch-like protein; P 41.4 4E+02 0.0088 27.2 12.6 108 19-132 336-466 (534)
245 PF14779 BBS1: Ciliary BBSome 41.4 87 0.0019 30.2 6.7 57 63-123 177-252 (257)
246 KOG0321|consensus 41.4 2.5E+02 0.0055 30.7 10.6 81 11-91 214-303 (720)
247 KOG0269|consensus 40.9 62 0.0013 35.8 6.1 104 25-133 100-210 (839)
248 COG2706 3-carboxymuconate cycl 40.6 4E+02 0.0087 26.9 13.0 132 8-142 80-237 (346)
249 PF01011 PQQ: PQQ enzyme repea 39.4 83 0.0018 20.7 4.6 31 113-144 2-32 (38)
250 KOG0290|consensus 38.7 4.2E+02 0.0091 26.6 11.1 115 10-132 191-320 (364)
251 KOG0771|consensus 38.3 2.4E+02 0.0052 29.0 9.5 128 2-141 172-322 (398)
252 KOG2066|consensus 38.3 1.7E+02 0.0038 32.6 9.0 124 12-141 36-198 (846)
253 KOG1538|consensus 38.1 88 0.0019 34.5 6.7 56 72-130 24-83 (1081)
254 PF04053 Coatomer_WDAD: Coatom 37.2 3.3E+02 0.0071 28.1 10.6 21 209-229 235-255 (443)
255 PF06433 Me-amine-dh_H: Methyl 34.6 69 0.0015 32.2 5.0 22 121-142 66-87 (342)
256 KOG0300|consensus 34.3 1.5E+02 0.0032 30.1 7.2 65 73-142 285-354 (481)
257 TIGR02604 Piru_Ver_Nterm putat 34.1 3.8E+02 0.0083 26.2 10.2 64 19-86 17-95 (367)
258 PF12341 DUF3639: Protein of u 34.0 70 0.0015 20.5 3.3 26 16-41 2-27 (27)
259 KOG1587|consensus 33.8 1.2E+02 0.0026 32.3 7.0 39 7-45 234-275 (555)
260 PRK02888 nitrous-oxide reducta 33.7 2.6E+02 0.0057 30.4 9.4 117 6-136 225-357 (635)
261 KOG1896|consensus 33.7 2.4E+02 0.0051 33.1 9.3 132 5-148 614-761 (1366)
262 PF05694 SBP56: 56kDa selenium 33.7 76 0.0017 33.1 5.3 107 3-133 229-345 (461)
263 smart00036 CNH Domain found in 33.4 4.4E+02 0.0096 25.3 13.9 118 17-140 153-280 (302)
264 PLN02153 epithiospecifier prot 33.4 4.4E+02 0.0095 25.2 12.7 68 20-92 27-112 (341)
265 PF14779 BBS1: Ciliary BBSome 32.9 1.8E+02 0.0039 28.1 7.4 68 13-87 174-256 (257)
266 KOG4640|consensus 32.6 66 0.0014 34.8 4.7 41 6-46 51-95 (665)
267 KOG4328|consensus 32.5 2.2E+02 0.0048 29.9 8.3 111 23-139 289-412 (498)
268 KOG0642|consensus 32.3 2.1E+02 0.0045 30.7 8.2 93 7-134 335-430 (577)
269 PF07494 Reg_prop: Two compone 31.9 64 0.0014 19.4 2.8 19 63-81 5-24 (24)
270 KOG0307|consensus 31.8 47 0.001 37.8 3.7 108 28-136 83-198 (1049)
271 KOG4283|consensus 31.7 5.4E+02 0.012 25.9 10.5 122 16-141 189-334 (397)
272 PF11768 DUF3312: Protein of u 31.4 64 0.0014 34.3 4.4 36 9-44 253-290 (545)
273 KOG0650|consensus 30.4 2.5E+02 0.0054 30.6 8.4 44 100-143 399-443 (733)
274 KOG0272|consensus 30.1 1.9E+02 0.0042 30.0 7.3 80 56-139 170-258 (459)
275 KOG2695|consensus 29.9 79 0.0017 32.2 4.5 118 7-134 204-333 (425)
276 KOG1912|consensus 29.7 2.9E+02 0.0062 31.2 8.9 68 73-143 78-156 (1062)
277 PHA02790 Kelch-like protein; P 29.4 6.3E+02 0.014 25.8 12.5 108 19-133 356-473 (480)
278 smart00036 CNH Domain found in 29.3 5.2E+02 0.011 24.8 10.7 58 26-91 14-75 (302)
279 TIGR03547 muta_rot_YjhT mutatr 29.2 5.1E+02 0.011 24.7 13.3 68 21-92 13-96 (346)
280 PF10395 Utp8: Utp8 family; I 29.0 8.2E+02 0.018 27.0 13.0 133 9-146 123-275 (670)
281 TIGR02604 Piru_Ver_Nterm putat 28.9 2.7E+02 0.0058 27.4 8.1 57 72-129 24-98 (367)
282 KOG1007|consensus 27.8 3.7E+02 0.0081 26.9 8.6 119 17-138 125-254 (370)
283 KOG1897|consensus 27.2 2.5E+02 0.0055 32.2 8.1 63 25-91 595-669 (1096)
284 COG4257 Vgb Streptogramin lyas 27.1 1.2E+02 0.0026 30.2 5.1 62 72-133 199-265 (353)
285 PLN00033 photosystem II stabil 27.1 6.8E+02 0.015 25.4 11.5 108 17-125 282-395 (398)
286 KOG0302|consensus 26.7 6.3E+02 0.014 26.2 10.2 118 15-140 257-388 (440)
287 KOG3621|consensus 26.3 1.4E+02 0.0031 32.8 5.9 91 19-113 39-136 (726)
288 COG3386 Gluconolactonase [Carb 26.0 5.5E+02 0.012 25.1 9.6 114 22-140 118-252 (307)
289 PF03022 MRJP: Major royal jel 25.9 5.9E+02 0.013 24.4 9.8 156 7-227 45-255 (287)
290 PF04841 Vps16_N: Vps16, N-ter 25.3 7.1E+02 0.015 25.1 13.4 35 7-41 71-107 (410)
291 KOG2114|consensus 24.8 1.1E+03 0.023 27.0 13.3 49 62-110 125-180 (933)
292 PLN00033 photosystem II stabil 24.6 7.5E+02 0.016 25.1 12.2 116 17-134 89-213 (398)
293 PF04762 IKI3: IKI3 family; I 24.6 1.1E+03 0.023 26.9 14.1 113 24-143 32-162 (928)
294 KOG1240|consensus 24.5 6.2E+02 0.013 30.0 10.6 121 16-138 1099-1233(1431)
295 PF15492 Nbas_N: Neuroblastoma 24.3 3.4E+02 0.0074 26.6 7.6 69 72-143 8-83 (282)
296 KOG0270|consensus 24.1 3.7E+02 0.008 28.1 8.1 121 4-131 162-318 (463)
297 KOG1063|consensus 23.8 1.6E+02 0.0034 32.4 5.7 61 67-130 150-224 (764)
298 KOG0290|consensus 23.5 1.4E+02 0.003 29.9 4.8 48 93-143 191-240 (364)
299 PF14727 PHTB1_N: PTHB1 N-term 23.0 92 0.002 32.0 3.7 41 2-42 314-359 (418)
300 PF07433 DUF1513: Protein of u 23.0 5.4E+02 0.012 25.5 8.9 81 62-142 162-259 (305)
301 COG3490 Uncharacterized protei 22.7 4.2E+02 0.009 26.6 7.9 49 100-148 224-278 (366)
302 KOG2041|consensus 22.3 4.5E+02 0.0097 29.6 8.6 92 27-125 231-332 (1189)
303 PF13540 RCC1_2: Regulator of 22.0 2.2E+02 0.0047 17.9 4.7 29 18-46 1-29 (30)
304 PRK05137 tolB translocation pr 21.4 6.3E+02 0.014 25.1 9.3 97 34-133 212-325 (435)
305 PRK14131 N-acetylneuraminic ac 21.4 7.7E+02 0.017 24.1 12.9 67 21-92 34-117 (376)
306 PF11635 Med16: Mediator compl 20.9 1.3E+02 0.0028 33.1 4.5 39 6-44 250-290 (753)
307 KOG1523|consensus 20.8 4.2E+02 0.0091 26.8 7.6 131 4-142 43-184 (361)
No 1
>KOG3522|consensus
Probab=100.00 E-value=1.3e-38 Score=330.30 Aligned_cols=284 Identities=26% Similarity=0.415 Sum_probs=208.4
Q ss_pred CceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCC---c
Q psy2153 16 DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL---K 92 (325)
Q Consensus 16 dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl---k 92 (325)
.+|.++.+..+.+++||-||++++|.|..+|.||.++++.+.+|. .||+.++..+|.+|++++++|+||+..|+ +
T Consensus 582 ~~v~~l~~ss~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~--lPvrsla~~ed~~was~gG~V~vi~~tt~~~~~ 659 (925)
T KOG3522|consen 582 ESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS--LPVRSLAFQEDFVWASEGGCVHVIPSTTFIRSW 659 (925)
T ss_pred hhhhhhhccccccccCccCCccccccCCCCCCCCCCCccccccCC--ccccchhhhhceeeeecCCceEEEechhccccc
Confidence 589999999999999999999999999999999999889999998 99999999999999999999999999999 7
Q ss_pred eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccc------cccccceeecccc-c
Q psy2153 93 SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMY------TFCSCVTIRTLLA-E 165 (325)
Q Consensus 93 sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~------~~~~~~~~~~~~~-~ 165 (325)
+.++|.+....|+||++.|.|||+||.++.++|+||++|++|+|||||++.|+.+++.. ...-|.++-.|+- +
T Consensus 660 ~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c~gl~~V~~~~ 739 (925)
T KOG3522|consen 660 DLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWCQGLLMVLTSL 739 (925)
T ss_pred hhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCccccccCcceeecCCCcccccCCCcccccceeEEeccc
Confidence 88999999999999999999999999999999999999999999999999998888763 3444654432221 1
Q ss_pred cccccCccccCCCcccc----ccccccccceeeeecc----------------CCCC-C--------CCcceeEEEEEEe
Q psy2153 166 TIISPFGWYANNPADIL----ESFTVCQSHLLCIASV----------------PGTG-K--------LGFSFVRITALLI 216 (325)
Q Consensus 166 ~~~~~~~~~~~~p~~~~----~~f~~~~~~~~ci~~v----------------p~~~-~--------~~~~~~riTsLl~ 216 (325)
+.--.++....+.-+.+ .++...+.-++=|+++ |+.. + -...|+|+|||+.
T Consensus 740 ~l~v~~~v~~~q~~k~~~~~~vS~~~~~~~vk~~~~~~~~H~~~~~~~~e~~~~~p~~~~~~~~Dai~~~~~~~~~s~~~ 819 (925)
T KOG3522|consen 740 TLLVALPVPRLQDSKVTGRMMVSYHAVWSPVKFSAHATALHEKTKDKSREVLAPPPVPQMLDQKDAIIKAACLRSTSLLD 819 (925)
T ss_pred eeEEEeeeeeccCCceeeeeeeecccccccchhhhhhhhhccchHhhhhhccCCCCCchhhhccchhhhchhhhhccccC
Confidence 11111111222211111 1111112222222221 2221 0 0125899999999
Q ss_pred eCCeeeEeCCCCccccceeeeecCCccccCCCccccccccccceeeccccCCceeEEEeecCCCCCCCCCCCCCCCCccc
Q psy2153 217 SSSRLWIGTASGKAPSGVRVFSEPATSVITPGTFIPYCSMAQAQLSFHGHRDAVKFFVSVPGSGGLSAATSVPQDCPVIE 296 (325)
Q Consensus 217 ~~~~LWiGTs~G~~~~~~~~~~~p~~~~~t~~~~~p~~~~~~~~~s~hgH~g~V~Fl~~v~~~~~~~~~~~~~~~~~~~~ 296 (325)
|+.++|+|||+|++ .+.|..+ | .+-+||+|||||++.+......-+....|-.-.+..
T Consensus 820 ~~~~iW~G~S~G~~------~~~~~~~--t--------------~~g~~~~~H~~~~~~~~~~~~~~~~~~~p~s~rS~~ 877 (925)
T KOG3522|consen 820 CDALIWLGTSAGVM------LTKPDLS--T--------------GSGSGHTGHVRFLLEVRSEGTIYDLLKDPVSLRSKA 877 (925)
T ss_pred chhheeecccccee------eeccCCC--C--------------CCCCccccceeeeEeeecCceehhcCCCcccccchh
Confidence 99999999999994 3334211 1 235999999999999998732211111111111333
Q ss_pred CCCCCCCCCcEEEEEcCCcccccccCC
Q psy2153 297 NVSGTEKPPSMLVMSGGEGYIDFRIAR 323 (325)
Q Consensus 297 ~~~~~~~~~~~lv~SgGeGy~dfr~~~ 323 (325)
++.+....+++|||||||||||||.++
T Consensus 878 ~r~~k~~~~~~Lvi~GG~G~~~~~~s~ 904 (925)
T KOG3522|consen 878 HRAKKAKASSALVISGGDGYEDFRKSG 904 (925)
T ss_pred hccccccCCceEEEeCCcchHHHHhcC
Confidence 334456788999999999999999764
No 2
>KOG3522|consensus
Probab=99.39 E-value=4.3e-13 Score=141.11 Aligned_cols=129 Identities=17% Similarity=0.264 Sum_probs=121.6
Q ss_pred CceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCC---c
Q psy2153 16 DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL---K 92 (325)
Q Consensus 16 dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl---k 92 (325)
.+|++|+|.++.||++++||+..+|. ..++.|++++.+..+.+....|++.|+.|.+++|| .+-+.|++..|+ .
T Consensus 669 ~~Vthm~~~~~gVwvafasG~~~rlf-htetl~hlqd~niaT~vt~~lP~~kllsv~~rl~c--~gl~~V~~~~~l~v~~ 745 (925)
T KOG3522|consen 669 HSVTHMLYLDNGVWVAFASGDEERLF-HTETLWHLQDSNIATSVTVDLPFGKLLSVPGRLWC--QGLLMVLTSLTLLVAL 745 (925)
T ss_pred ceEEEEEeeCCceEEEEcCCCEEEEe-cccccCCccccccCcceeecCCCcccccCCCcccc--cceeEEeccceeEEEe
Confidence 48999999999999999999999998 77889999999998888878999999999999999 999999999999 6
Q ss_pred eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 93 SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 93 sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
.|...++ ...+.+|.++-.+||+.++.+..+.+||.+|++.+.|+|..++|.+|+
T Consensus 746 ~v~~~q~-~k~~~~~~vS~~~~~~~vk~~~~~~~~H~~~~~~~~e~~~~~p~~~~~ 800 (925)
T KOG3522|consen 746 PVPRLQD-SKVTGRMMVSYHAVWSPVKFSAHATALHEKTKDKSREVLAPPPVPQML 800 (925)
T ss_pred eeeeccC-CceeeeeeeecccccccchhhhhhhhhccchHhhhhhccCCCCCchhh
Confidence 7888887 677889999999999999999999999999999999999999999999
No 3
>KOG2077|consensus
Probab=98.09 E-value=1.3e-06 Score=89.88 Aligned_cols=35 Identities=57% Similarity=1.022 Sum_probs=32.2
Q ss_pred cccCCCccccccccccccceeeeeccCCCCCCCcc
Q psy2153 173 WYANNPADILESFTVCQSHLLCIASVPGTGKLGFS 207 (325)
Q Consensus 173 ~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~ 207 (325)
+|||+|++|+++|.+|++|+|||++|||..+.+|.
T Consensus 660 iDAnqPgni~d~FtvCnsHvLCI~svpga~e~dyp 694 (832)
T KOG2077|consen 660 IDANQPGNILDSFTVCNSHVLCIASVPGARETDYP 694 (832)
T ss_pred EecCCCCchhhcccccccceeeeecccccccCCCC
Confidence 69999999999999999999999999999876553
No 4
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.94 E-value=0.0011 Score=56.95 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=85.2
Q ss_pred Cccceee-CCCceeeeEEeC-CeEEEEec-CCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEEC-
Q psy2153 7 TPYPLNK-ILDTALPPVHVQ-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGYK- 80 (325)
Q Consensus 7 ~~L~~Ik-L~dsVl~I~~~~-~~VfVgLA-NGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~g- 80 (325)
+....++ -++.|.++.+.+ ++++++.. +|.|.+|+.... +....+.. ...+|+++....+ .+++++.
T Consensus 126 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-----~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 126 KCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-----KCVATLTG--HTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred EEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-----ccceeEec--CccccceEEECCCcCEEEEecCC
Confidence 3444444 346799999876 55555555 999999986432 11223332 2368999888875 7888774
Q ss_pred CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeee
Q psy2153 81 NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 81 nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdId 139 (325)
++|.++|..+. +.+..+. ..|..++...++-++.... +..|++||..+.+.++.+.
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred CcEEEEECCCCceecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 56999999876 3444443 5899999987676666665 9999999999877666554
No 5
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.59 E-value=0.004 Score=53.56 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=81.7
Q ss_pred CCceeeeEEeC--CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEE-CCeEEEEcCC
Q psy2153 15 LDTALPPVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGY-KNKIHVVDPK 89 (325)
Q Consensus 15 ~dsVl~I~~~~--~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~-gnkI~VIn~~ 89 (325)
+++|.++.+.+ +.++++-.+|.+.+|+..... ....+.. ...++.++....+ .+++++ .+.|++++.+
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~-----~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE-----LLRTLKG--HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC-----cEEEEec--CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 47899999976 577778789999999865432 1122222 2367767666653 677777 4669999998
Q ss_pred CC---ceeEecCCCCCceeEEEEeCCeEEEEEe-CCCeEEEEecCccceeeeee
Q psy2153 90 SL---KSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 90 Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~-~ss~IrL~ha~T~e~LqdId 139 (325)
+. +.+..|. ..|.++.+...+-.++.. .+..|++||..+.+.++.+.
T Consensus 82 ~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 132 (289)
T cd00200 82 TGECVRTLTGHT---SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR 132 (289)
T ss_pred cccceEEEeccC---CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec
Confidence 85 3444333 579999988765444444 49999999999988888777
No 6
>KOG0301|consensus
Probab=97.57 E-value=0.00095 Score=70.43 Aligned_cols=177 Identities=21% Similarity=0.325 Sum_probs=114.0
Q ss_pred eEEeC---CeEEEEecCCcEEEEEcCC--------------------------CCCCCCCCCeEEEcCC-------CCCc
Q psy2153 21 PVHVQ---GRVVCALADGSVAIFRRGP--------------------------DGQWDLSKYHTVTLGL-------PHHS 64 (325)
Q Consensus 21 I~~~~---~~VfVgLANGtLaVF~R~~--------------------------~g~WD~~~~~~I~LG~-------~~~P 64 (325)
++|.+ +++++|.-|+.+++|.+.. .|+||-.- ++=.+|. -+++
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~Ta-kvW~~~~l~~~l~gH~as 142 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTA-KVWRIGELVYSLQGHTAS 142 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccce-EEecchhhhcccCCcchh
Confidence 66654 7899999999999998764 34576322 2222221 1256
Q ss_pred eeeeeeeC-CEEEEEECCe-EEEEcCCCC-ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 65 VRSLAAVY-NKVWCGYKNK-IHVVDPKSL-KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 65 V~cml~v~-~~LW~g~gnk-I~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
|-...... ++.--||++| |++.+.+++ +.|..|. +.|+.++.-.++=++|+.+++.||+|+- +.+.|.+..=.
T Consensus 143 VWAv~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHt---D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~gh 218 (745)
T KOG0301|consen 143 VWAVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHT---DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGH 218 (745)
T ss_pred eeeeeecCCCcEEeccCcceeeeccCCchhhhhccch---hheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeecc
Confidence 66665554 4555689988 999999888 9999988 7899999988888999999999999999 77777665533
Q ss_pred h-hhhhhcccccccccceeeccccccccccCccccCCCccccccccccccceeeeecc--CCCCCCCcceeEEEEEEeeC
Q psy2153 142 P-YVSKMLGMYTFCSCVTIRTLLAETIISPFGWYANNPADILESFTVCQSHLLCIASV--PGTGKLGFSFVRITALLISS 218 (325)
Q Consensus 142 ~-~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~v--p~~~~~~~~~~riTsLl~~~ 218 (325)
+ +|=.+- -..+++.|-+-|-| ..++.|.. --|-+.+ |++. .=-+++| -+
T Consensus 219 tn~vYsis---~~~~~~~Ivs~gED--------------rtlriW~~----~e~~q~I~lPtts-----iWsa~~L--~N 270 (745)
T KOG0301|consen 219 TNFVYSIS---MALSDGLIVSTGED--------------RTLRIWKK----DECVQVITLPTTS-----IWSAKVL--LN 270 (745)
T ss_pred ceEEEEEE---ecCCCCeEEEecCC--------------ceEEEeec----CceEEEEecCccc-----eEEEEEe--eC
Confidence 2 111110 01233333322221 24555533 1233333 7643 3334444 47
Q ss_pred CeeeEeCCCCcc
Q psy2153 219 SRLWIGTASGKA 230 (325)
Q Consensus 219 ~~LWiGTs~G~~ 230 (325)
+.+.+|.|.|.+
T Consensus 271 gDIvvg~SDG~V 282 (745)
T KOG0301|consen 271 GDIVVGGSDGRV 282 (745)
T ss_pred CCEEEeccCceE
Confidence 889999999973
No 7
>KOG1036|consensus
Probab=97.49 E-value=0.0026 Score=61.84 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=96.4
Q ss_pred CCCCCccceeeCCCceeeeEEeC-CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEE
Q psy2153 3 YPHPTPYPLNKILDTALPPVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGY 79 (325)
Q Consensus 3 ~~~~~~L~~IkL~dsVl~I~~~~-~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~ 79 (325)
++...++...+...++|+-.+.+ .++|+|-.+|.|..|+++.+. ...+|+-..||+||... .+.+-.|+
T Consensus 42 v~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~--------~~~igth~~~i~ci~~~~~~~~vIsgs 113 (323)
T KOG1036|consen 42 VPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGN--------EDQIGTHDEGIRCIEYSYEVGCVISGS 113 (323)
T ss_pred ccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCc--------ceeeccCCCceEEEEeeccCCeEEEcc
Confidence 34556778888899999999864 689999999999999998753 34678777999999888 79999999
Q ss_pred CCe-EEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceee
Q psy2153 80 KNK-IHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 80 gnk-I~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
.++ |.++|+..- .-.-..+....|.+|-..|.-+-+.++ +..+..||-.+++.-.
T Consensus 114 WD~~ik~wD~R~~-~~~~~~d~~kkVy~~~v~g~~LvVg~~-~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 114 WDKTIKFWDPRNK-VVVGTFDQGKKVYCMDVSGNRLVVGTS-DRKVLIYDLRNLDEPF 169 (323)
T ss_pred cCccEEEEecccc-ccccccccCceEEEEeccCCEEEEeec-CceEEEEEcccccchh
Confidence 977 999999973 222233344589999999887776655 4567788887766443
No 8
>KOG0646|consensus
Probab=97.39 E-value=0.0074 Score=61.37 Aligned_cols=126 Identities=7% Similarity=0.031 Sum_probs=88.9
Q ss_pred ceeeCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc-CCCCCceeeeeeeCC-EEEEEEC-C-eE
Q psy2153 10 PLNKILDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL-GLPHHSVRSLAAVYN-KVWCGYK-N-KI 83 (325)
Q Consensus 10 ~~IkL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L-G~~~~PV~cml~v~~-~LW~g~g-n-kI 83 (325)
+.+.+|.+|.||.-. ...|++|.-.|+|.+++-+.+.. +.+ ..--.+|+|+...+| ......+ + .|
T Consensus 76 q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L--------L~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL--------LNVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccH--------HHHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 478899999999985 45788888899999998766432 222 112389999999974 4444333 3 38
Q ss_pred EEEcCCCC---------ceeEecCCCCCceeEEEEeCC---eEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 84 HVVDPKSL---------KSFDAHPRRESQVRQMTWAGD---GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 84 ~VIn~~Tl---------ksf~~~~~~~~~V~~Ma~~G~---GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
+|....++ +.+-.-.+....|+.|...-. +.-++.+.|.++|+||-.+.++|..|-.-..
T Consensus 148 ~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s 219 (476)
T KOG0646|consen 148 LVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS 219 (476)
T ss_pred EEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCc
Confidence 88876555 222222334488999988743 2666999999999999999988887765543
No 9
>KOG1539|consensus
Probab=97.34 E-value=0.00072 Score=72.52 Aligned_cols=125 Identities=23% Similarity=0.389 Sum_probs=96.9
Q ss_pred ceeeeEEeCCeEEEEecCCcEEEEEcCC----------------------------------CC---CCCCCCC---eEE
Q psy2153 17 TALPPVHVQGRVVCALADGSVAIFRRGP----------------------------------DG---QWDLSKY---HTV 56 (325)
Q Consensus 17 sVl~I~~~~~~VfVgLANGtLaVF~R~~----------------------------------~g---~WD~~~~---~~I 56 (325)
.-.|+-++.|.+|+|.++|+|-+|.-.+ +| .||+..- +.+
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 4455667999999999999999997432 11 4777654 335
Q ss_pred EcCCCCCceeeeeeeC--CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEE-eCCCeEEEEec
Q psy2153 57 TLGLPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSI-RLDSTLRMYNA 129 (325)
Q Consensus 57 ~LG~~~~PV~cml~v~--~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~-~~ss~IrL~ha 129 (325)
.||. ++++|.... +-+=.+|.+- |.++|..|. +.|.-|. .+|+.|.-+.+|=|+.. ..+++||+||.
T Consensus 532 ~l~~---~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~---nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 532 RLGS---SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHG---NRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred ccCC---CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccc---cceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 5664 788887775 4556677765 999999998 6888888 77999999999999765 46899999999
Q ss_pred Cccceeeeeecchhhhhh
Q psy2153 130 HTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 130 ~T~e~LqdIdIa~~v~~~ 147 (325)
-|..++--+-+...-+.+
T Consensus 606 pt~~lID~~~vd~~~~sl 623 (910)
T KOG1539|consen 606 PTGTLIDGLLVDSPCTSL 623 (910)
T ss_pred cCcceeeeEecCCcceee
Confidence 999998888777654444
No 10
>PTZ00421 coronin; Provisional
Probab=97.18 E-value=0.021 Score=58.91 Aligned_cols=123 Identities=16% Similarity=0.193 Sum_probs=86.7
Q ss_pred CCceeeeEEeC---CeEEEEecCCcEEEEEcCCCCC-CCCCCCeEEEcCCCCCceeeeeeeC---CEEEEEECC-eEEEE
Q psy2153 15 LDTALPPVHVQ---GRVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGLPHHSVRSLAAVY---NKVWCGYKN-KIHVV 86 (325)
Q Consensus 15 ~dsVl~I~~~~---~~VfVgLANGtLaVF~R~~~g~-WD~~~~~~I~LG~~~~PV~cml~v~---~~LW~g~gn-kI~VI 86 (325)
.++|+++.+.. +.++.|-.||+|.+|+-..++. .+...+ ...+.....+|.++.... +.|..|+.+ .|.+.
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~-l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDP-IVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcc-eEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 36899999863 4688888999999998654432 122222 223322347899887763 356666654 59999
Q ss_pred cCCCCc---eeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 87 DPKSLK---SFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 87 n~~Tlk---sf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
|.++.+ .+..|. ..|+.++++.+| .-++...+.+|++||..+.+.+.++.-.
T Consensus 154 Dl~tg~~~~~l~~h~---~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H 209 (493)
T PTZ00421 154 DVERGKAVEVIKCHS---DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209 (493)
T ss_pred ECCCCeEEEEEcCCC---CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecC
Confidence 998873 444454 679999988655 5557778999999999999988887643
No 11
>KOG0306|consensus
Probab=97.17 E-value=0.0031 Score=67.37 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=97.0
Q ss_pred ceeeCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc-CCCCCceeeeeeeC-CEEEE-EECCe-E
Q psy2153 10 PLNKILDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL-GLPHHSVRSLAAVY-NKVWC-GYKNK-I 83 (325)
Q Consensus 10 ~~IkL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L-G~~~~PV~cml~v~-~~LW~-g~gnk-I 83 (325)
+.+.|+|-|+|+.+. ...+-|||-|.++-||--+.-. ..++| |. ..||+||-... .++-+ |+.+| |
T Consensus 503 rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-------FflsLYGH-kLPV~smDIS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 503 RTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-------FFLSLYGH-KLPVLSMDISPDSKLIVTGSADKNV 574 (888)
T ss_pred eEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-------eeeeeccc-ccceeEEeccCCcCeEEeccCCCce
Confidence 678999999999998 6679999999999999844322 34677 64 58999997775 45554 55555 8
Q ss_pred EEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 84 HVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 84 ~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.|.-.+-. |+|-+|.|+-..|.-+- ....+.++..+..++-||.+.++++|..|=.+
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~ 634 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHH 634 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeechhhhhhheeeccch
Confidence 88766554 89999998766676544 45778899999999999999999999988543
No 12
>KOG2110|consensus
Probab=97.02 E-value=0.012 Score=58.62 Aligned_cols=118 Identities=14% Similarity=0.190 Sum_probs=83.3
Q ss_pred eeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCC------CCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC--Ce
Q psy2153 11 LNKILDTALPPVHVQGRVVCALADGSVAIFRRGP------DGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK--NK 82 (325)
Q Consensus 11 ~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~------~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g--nk 82 (325)
++.-|.+|+++.-.++|+.|-|..- +.||+-+. -..|..++..+..+.. ++=.|.+... ++. ..
T Consensus 83 e~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~--n~~n~ylAyp-----~s~t~Gd 154 (391)
T KOG2110|consen 83 EIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSP--NNANCYLAYP-----GSTTSGD 154 (391)
T ss_pred EEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeecc--CCCCceEEec-----CCCCCce
Confidence 5566789999999999999999985 99998432 1123222222333332 2223344333 334 45
Q ss_pred EEEEcCCCCc---eeEecCCCCCceeEEEEeCCeEEEEE--eCCCeEEEEecCccceeeeee
Q psy2153 83 IHVVDPKSLK---SFDAHPRRESQVRQMTWAGDGVWVSI--RLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 83 I~VIn~~Tlk---sf~~~~~~~~~V~~Ma~~G~GVWiS~--~~ss~IrL~ha~T~e~LqdId 139 (325)
|+++|+.+++ .+++|. ..|.+|+-+.+|=-+|. ..+.+||+|+..+.+.++|+-
T Consensus 155 V~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 155 VVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred EEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 9999999994 567887 88999999877755555 468889999999999999985
No 13
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.01 E-value=0.017 Score=55.98 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=86.0
Q ss_pred CCCccceeeCCCce------eeeEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceeeeeeeCCEEEE
Q psy2153 5 HPTPYPLNKILDTA------LPPVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWC 77 (325)
Q Consensus 5 ~~~~L~~IkL~dsV------l~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~ 77 (325)
..+.+|+.++.+.+ ......+++||++-.+|.|..|+...+. .|..+-... +. ..| +..+++|++
T Consensus 39 ~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~--~~p----~v~~~~v~v 110 (377)
T TIGR03300 39 KVDQVWSASVGDGVGHYYLRLQPAVAGGKVYAADADGTVVALDAETGKRLWRVDLDER--LS--GGV----GADGGLVFV 110 (377)
T ss_pred cceeeeEEEcCCCcCccccccceEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC--cc--cce----EEcCCEEEE
Confidence 36789999999987 4677889999999999999999865432 475432221 11 123 345789999
Q ss_pred EEC-CeEEEEcCCCCce-eEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 78 GYK-NKIHVVDPKSLKS-FDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 78 g~g-nkI~VIn~~Tlks-f~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
++. +.++.+|++|.+. +..... .......+..+..|++ ...+..|+.||.+|.+.+.+.+...
T Consensus 111 ~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~ 175 (377)
T TIGR03300 111 GTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVANGLVVV-RTNDGRLTALDAATGERLWTYSRVT 175 (377)
T ss_pred EcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEECCEEEE-ECCCCeEEEEEcCCCceeeEEccCC
Confidence 886 5799999988732 222111 1111223334455554 4567889999999999988877643
No 14
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.98 E-value=0.03 Score=55.07 Aligned_cols=111 Identities=12% Similarity=0.146 Sum_probs=76.5
Q ss_pred eeEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-CeEEEEcCCCCce-eEe
Q psy2153 20 PPVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLKS-FDA 96 (325)
Q Consensus 20 ~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-nkI~VIn~~Tlks-f~~ 96 (325)
+-+..++.||++..+|.|..++...+. .|.. .++.+. .+...+++|+++.. ++++.+|+++.+. +..
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~~~~----~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKR------EYGSVN----DFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEee------cCCCcc----CcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 445568999999999999999975432 4653 244422 34567899999875 5699999998832 222
Q ss_pred cCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 97 HPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 97 ~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
...........+..+..|++ ...+..|+++|+.|.+.+...++.
T Consensus 321 ~~~~~~~~~sp~v~~g~l~v-~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 321 SDLLHRLLTAPVLYNGYLVV-GDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred cccCCCcccCCEEECCEEEE-EeCCCEEEEEECCCCCEEEEEEcC
Confidence 11112334445556667765 567789999999999998887763
No 15
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.85 E-value=0.05 Score=52.74 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=75.6
Q ss_pred eEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-CeEEEEcCCCCcee-Eec
Q psy2153 21 PVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSLKSF-DAH 97 (325)
Q Consensus 21 I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-nkI~VIn~~Tlksf-~~~ 97 (325)
....+++||++-.+|.|..|+...+. .|..+ .+....| ...+++|+++.. +.++.+|+.+.+.. +..
T Consensus 237 p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~------~~~~~~p----~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 237 PVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD------ASSYQGP----AVDDNRLYVTDADGVVVALDRRSGSELWKND 306 (377)
T ss_pred cEEECCEEEEEEcCCEEEEEECCCCcEEEeec------cCCccCc----eEeCCEEEEECCCCeEEEEECCCCcEEEccc
Confidence 34568899999999999999975432 36543 2332233 356899999886 46999999887422 221
Q ss_pred CCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 98 PRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 98 ~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
..........+..+..|++ ...+..|+++|+.|.|.+..+.+.
T Consensus 307 ~~~~~~~ssp~i~g~~l~~-~~~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 307 ELKYRQLTAPAVVGGYLVV-GDFEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred cccCCccccCEEECCEEEE-EeCCCEEEEEECCCCCEEEEEEcC
Confidence 2222344555667766764 567789999999999999877754
No 16
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.77 E-value=0.75 Score=49.68 Aligned_cols=123 Identities=11% Similarity=0.072 Sum_probs=81.7
Q ss_pred CCceeeeEEeC--CeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceeeeeee---CCEEEEEEC-CeEEEEc
Q psy2153 15 LDTALPPVHVQ--GRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAV---YNKVWCGYK-NKIHVVD 87 (325)
Q Consensus 15 ~dsVl~I~~~~--~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~cml~v---~~~LW~g~g-nkI~VIn 87 (325)
.+.|.++.+.. +.+..|-.||+|.||+.+..- .........+.+.. ..+|.++... +..|-.++. +.|.+.|
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 45788888863 456677889999999853210 01111112233332 3577777654 244555554 4599999
Q ss_pred CCCCc---eeEecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 88 PKSLK---SFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 88 ~~Tlk---sf~~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.++.+ .++.|. ..|++++... ..+.++...+.+|++||..+.+.++.+...
T Consensus 562 ~~~~~~~~~~~~H~---~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~ 617 (793)
T PLN00181 562 VARSQLVTEMKEHE---KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK 617 (793)
T ss_pred CCCCeEEEEecCCC---CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC
Confidence 88773 444454 7799999963 347789999999999999999998888754
No 17
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.72 E-value=0.035 Score=54.56 Aligned_cols=135 Identities=13% Similarity=0.114 Sum_probs=86.3
Q ss_pred CCCccceeeCCCcee------eeEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEc-CCC-CCce-eeeeeeCCE
Q psy2153 5 HPTPYPLNKILDTAL------PPVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTL-GLP-HHSV-RSLAAVYNK 74 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl------~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~L-G~~-~~PV-~cml~v~~~ 74 (325)
..|.+|+.++.+.+. .-+..+++||++-.+|.|..|+...+. .|..+-...-.. +.. ...+ ...+..+++
T Consensus 43 ~~~~~W~~~~g~g~~~~~~~~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 122 (394)
T PRK11138 43 TPTTVWSTSVGDGVGDYYSRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGK 122 (394)
T ss_pred CcceeeEEEcCCCCccceeeeccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCE
Confidence 467899999988663 446689999999999999999965432 585443221001 100 0011 124566899
Q ss_pred EEEEECC-eEEEEcCCCCce-eEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 75 VWCGYKN-KIHVVDPKSLKS-FDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 75 LW~g~gn-kI~VIn~~Tlks-f~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
|++++.+ .++.||++|.+. .+..... .....-+..+.-|++ ...+..|+.+|++|.+.+...+..
T Consensus 123 v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 123 VYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVSDGLVLV-HTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEECCEEEE-ECCCCEEEEEEccCCCEeeeecCC
Confidence 9999875 699999999832 1211111 111122334555665 455778999999999999888764
No 18
>KOG2111|consensus
Probab=96.53 E-value=0.068 Score=52.51 Aligned_cols=123 Identities=16% Similarity=0.207 Sum_probs=85.0
Q ss_pred CccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCceeeeeeeCCEEEEEE-C---C
Q psy2153 7 TPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHSVRSLAAVYNKVWCGY-K---N 81 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~PV~cml~v~~~LW~g~-g---n 81 (325)
+..-++....+|..+....+++.|.|.| ++.||.-.. |+...+.+.--. |. -+-+|....++-..+| | +
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~-~I~VytF~~----n~k~l~~~et~~NPk-GlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLEN-KIYVYTFPD----NPKLLHVIETRSNPK-GLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecC-eEEEEEcCC----ChhheeeeecccCCC-ceEeecCCCCceEEEcCCCccc
Confidence 4556788889999999999999999998 899998432 123333333322 32 2555555544433333 2 4
Q ss_pred eEEEEcCCCC-----ceeEecCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecCccceeeee
Q psy2153 82 KIHVVDPKSL-----KSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 82 kI~VIn~~Tl-----ksf~~~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
+|-|.+-... +...||. +.|.||+..-+| |-.+-..+..||+||+++.+.|||+
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred eEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 5777775554 2346776 889999998666 5545556888999999999999994
No 19
>KOG0274|consensus
Probab=96.52 E-value=0.02 Score=59.89 Aligned_cols=127 Identities=20% Similarity=0.228 Sum_probs=94.5
Q ss_pred CCCCccceee-CCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEECC
Q psy2153 4 PHPTPYPLNK-ILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYKN 81 (325)
Q Consensus 4 ~~~~~L~~Ik-L~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~gn 81 (325)
+..+-|+.++ -.++|.|+.+.++.+|.|-.+|+|.||+-... +--+.++ | -...|+++++-. +.+.=|+=+
T Consensus 319 ~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~-----~cl~sl~-g-H~~~V~sl~~~~~~~~~Sgs~D 391 (537)
T KOG0274|consen 319 TNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTG-----KCLKSLS-G-HTGRVYSLIVDSENRLLSGSLD 391 (537)
T ss_pred cCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhc-----eeeeeec-C-CcceEEEEEecCcceEEeeeec
Confidence 3455666677 77899999999999999999999999985421 1112222 3 248899986666 677777776
Q ss_pred e-EEEEcCCCC-c---eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 82 K-IHVVDPKSL-K---SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 82 k-I~VIn~~Tl-k---sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+ |.+.|.+++ + .+..|. +.|..|... .-.-+|...+++|++||.+++++++.+.-.
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~---~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~ 452 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHT---SLVSSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEGR 452 (537)
T ss_pred cceEeecCCchhhhhhhhcCCc---ccccccccc-cceeEeccccccEEEeecccCceeeeeccC
Confidence 6 999999998 4 344444 556666655 355668888999999999999999988875
No 20
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.46 E-value=0.19 Score=44.72 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCCccceeeCCC---cee-eeEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceee-eeeeCCEEEEE
Q psy2153 5 HPTPYPLNKILD---TAL-PPVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRS-LAAVYNKVWCG 78 (325)
Q Consensus 5 ~~~~L~~IkL~d---sVl-~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~c-ml~v~~~LW~g 78 (325)
.=+.+|+.++.. ... .....+++||++-.+|.|..|+...+. .| ...+.. ++.. ....+++|+++
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W------~~~~~~---~~~~~~~~~~~~v~v~ 82 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW------RFDLPG---PISGAPVVDGGRVYVG 82 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE------EEECSS---CGGSGEEEETTEEEEE
T ss_pred CCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE------Eeeccc---cccceeeecccccccc
Confidence 447789998843 222 233489999999999999999964432 23 345533 2222 46778999999
Q ss_pred EC-CeEEEEcCCCCc-eeEe---c-CCC-CCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 79 YK-NKIHVVDPKSLK-SFDA---H-PRR-ESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 79 ~g-nkI~VIn~~Tlk-sf~~---~-~~~-~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
+. ++|+.+|++|.+ .++. . +.. .......+..++.+.++. .+..|..+|.+|.+.+.+..+..
T Consensus 83 ~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 83 TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-SSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-TCSEEEEEETTTTEEEEEEESST
T ss_pred cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-ccCcEEEEecCCCcEEEEeecCC
Confidence 86 579999999983 2232 1 111 122334555666666444 48999999999999999998843
No 21
>KOG0274|consensus
Probab=96.43 E-value=0.025 Score=59.10 Aligned_cols=96 Identities=18% Similarity=0.259 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEcCC-CCCceeeeeeeCCEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCC
Q psy2153 47 QWDLSKYHTVTLGL-PHHSVRSLAAVYNKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLD 121 (325)
Q Consensus 47 ~WD~~~~~~I~LG~-~~~PV~cml~v~~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~s 121 (325)
.|+++++..+.+=. ...||+|+..-++.+.+|+.+. |.|.++.++ ++++-|. ..|+.++..+...-++-+.+
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~~~~~Sgs~D 391 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSENRLLSGSLD 391 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCc---ceEEEEEecCcceEEeeeec
Confidence 47778777766632 6799999999999999999976 999999998 5666666 78999987764677788899
Q ss_pred CeEEEEecCcc-ceeeeeecchhhh
Q psy2153 122 STLRMYNAHTY-QHLQDVDIEPYVS 145 (325)
Q Consensus 122 s~IrL~ha~T~-e~LqdIdIa~~v~ 145 (325)
.+|+.||-++. ++++...-...+.
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLV 416 (537)
T ss_pred cceEeecCCchhhhhhhhcCCcccc
Confidence 99999999999 8888777665544
No 22
>KOG0291|consensus
Probab=96.39 E-value=0.05 Score=58.52 Aligned_cols=132 Identities=19% Similarity=0.234 Sum_probs=96.2
Q ss_pred CCCCCCccceeeCCC-ceeeeEEeCCeEEEEecCC---cEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC-E-E
Q psy2153 2 EYPHPTPYPLNKILD-TALPPVHVQGRVVCALADG---SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN-K-V 75 (325)
Q Consensus 2 ~~~~~~~L~~IkL~d-sVl~I~~~~~~VfVgLANG---tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~-~-L 75 (325)
|+|++.++|++++.+ .|+.+....-.=|+|++.+ +|.||+ |-.+. .+++...-...++||..-.| + +
T Consensus 293 elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe------WqsEs-YVlKQQgH~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 293 ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE------WQSES-YVLKQQGHSDRITSLAYSPDGQLI 365 (893)
T ss_pred ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE------eeccc-eeeeccccccceeeEEECCCCcEE
Confidence 789999999999994 8888888744456666554 688886 65444 34455322357899988865 4 4
Q ss_pred EEEEC-CeEEEEcCCCC---ceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 76 WCGYK-NKIHVVDPKSL---KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 76 W~g~g-nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
-.|+. +||.|.|+.+. .+|+-|. +.|+.+... ...+-+|-+.+++||.||-+.|+.-..+-+-.+
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHt---s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p 435 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHT---SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP 435 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCC---CceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc
Confidence 44555 67999999996 6777777 556654444 235778999999999999999988777766544
No 23
>KOG0276|consensus
Probab=96.33 E-value=0.018 Score=60.71 Aligned_cols=108 Identities=18% Similarity=0.226 Sum_probs=82.9
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECC---eEEEEcCC
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKN---KIHVVDPK 89 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gn---kI~VIn~~ 89 (325)
.|.|-|+-.+ +--++++|=||+|.|+.-+.- .-.+.+.+-. .|||....+..+=|.-+|. +|-|+|-.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetq-----tmVksfeV~~--~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQ-----TMVKSFEVSE--VPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccc-----eeeeeeeecc--cchhhheeeeccceEEEecCCceEEEEecc
Confidence 3566666654 556899999999988753211 1125567766 8999999999888876663 49999999
Q ss_pred CC---ceeEecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecCcc
Q psy2153 90 SL---KSFDAHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 90 Tl---ksf~~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~T~ 132 (325)
|+ |+|++|+ .-|+++++.. .--.++-+.+.+|++||.+..
T Consensus 86 t~ekV~~FeAH~---DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 86 TGEKVKTFEAHS---DYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE 129 (794)
T ss_pred cceeeEEeeccc---cceeeeeecCCCCeEEecCCccEEEEeeccCc
Confidence 99 8999999 6799999874 346678889999999998754
No 24
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=96.32 E-value=0.032 Score=55.44 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=74.1
Q ss_pred ceeeeEEeCC-eEEEEecCC--cEEEEEcCCCCCCCCCCCe---EEEcCCCCCceeeeeee--CCEEEEE----EC-CeE
Q psy2153 17 TALPPVHVQG-RVVCALADG--SVAIFRRGPDGQWDLSKYH---TVTLGLPHHSVRSLAAV--YNKVWCG----YK-NKI 83 (325)
Q Consensus 17 sVl~I~~~~~-~VfVgLANG--tLaVF~R~~~g~WD~~~~~---~I~LG~~~~PV~cml~v--~~~LW~g----~g-nkI 83 (325)
.+..+.|.+. -||.--..| .+.....+....||....+ .|.++. .|+- +-.. ...||+. .. ++|
T Consensus 220 ~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G--~glF-i~thP~s~~vwvd~~~~~~~~~v 296 (369)
T PF02239_consen 220 PGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG--GGLF-IKTHPDSRYVWVDTFLNPDADTV 296 (369)
T ss_dssp TEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS--SS---EE--TT-SEEEEE-TT-SSHT-E
T ss_pred ccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC--Ccce-eecCCCCccEEeeccCCCCCceE
Confidence 4445566554 566555544 4456776666667766654 466644 4532 2223 3689998 22 569
Q ss_pred EEEcCCCCce-eEecCCCCCceeEEEEeCC--eEEEEEeCCC-eEEEEecCccceeeeeecchhh
Q psy2153 84 HVVDPKSLKS-FDAHPRRESQVRQMTWAGD--GVWVSIRLDS-TLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 84 ~VIn~~Tlks-f~~~~~~~~~V~~Ma~~G~--GVWiS~~~ss-~IrL~ha~T~e~LqdIdIa~~v 144 (325)
.|||.+|++. ..........+.||....+ -||+|..... .|.+||++|+|.+.+|.+.++.
T Consensus 297 ~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~tP~ 361 (369)
T PF02239_consen 297 QVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPTPT 361 (369)
T ss_dssp EEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--SEE
T ss_pred EEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeCCC
Confidence 9999999932 2222222345889998744 5999999988 9999999999999999965543
No 25
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.29 E-value=0.06 Score=47.87 Aligned_cols=127 Identities=20% Similarity=0.190 Sum_probs=77.0
Q ss_pred CCccceeeCCCceeee-EEeCCeEEEEecCCcEEEEEcCC-CCCCCCCCCeEEEcC-CCCCc---eeeeeeeCCEEEEEE
Q psy2153 6 PTPYPLNKILDTALPP-VHVQGRVVCALADGSVAIFRRGP-DGQWDLSKYHTVTLG-LPHHS---VRSLAAVYNKVWCGY 79 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I-~~~~~~VfVgLANGtLaVF~R~~-~g~WD~~~~~~I~LG-~~~~P---V~cml~v~~~LW~g~ 79 (325)
=+.+|+..+++.+... ...+++||++..+|.|..|+... .-.|.. ... .+..+ .......++.+.+++
T Consensus 56 G~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (238)
T PF13360_consen 56 GKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI------YLTSSPPAGVRSSSSPAVDGDRLYVGT 129 (238)
T ss_dssp SEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE------EE-SSCTCSTB--SEEEEETTEEEEEE
T ss_pred CCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeee------ccccccccccccccCceEecCEEEEEe
Confidence 3678999998876554 88899999999999999998332 224541 111 11111 222334489999999
Q ss_pred -CCeEEEEcCCCCce---eEecCCC-CCce-------eEEEEeCCeEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 80 -KNKIHVVDPKSLKS---FDAHPRR-ESQV-------RQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 80 -gnkI~VIn~~Tlks---f~~~~~~-~~~V-------~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
.+.|+.+|++|.+. ++..... ...+ ..++..+.-|+++-.....+.+ |.+|.+.+.+.+
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~ 200 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP 200 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC
T ss_pred ccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec
Confidence 78899999999843 3442211 1221 3444444455554444444555 777777554443
No 26
>KOG1036|consensus
Probab=96.27 E-value=0.079 Score=51.78 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=83.5
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEEC-CeEEEEcCCC
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYK-NKIHVVDPKS 90 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~g-nkI~VIn~~T 90 (325)
+|.|.++.+. ++.++|+.=||+|.+|+-.+. ++. ..+..+ .||.+....+ .++|.|+- ++|..+|-.+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~---~l~--~~~~~~---~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPAN---SLK--LKFKHG---APLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccch---hhh--hheecC---CceeeeeccCCceEEEeccCceEEEEEecC
Confidence 4789999986 678999999999999995443 111 123333 6999988887 57887665 7799999998
Q ss_pred CceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCc
Q psy2153 91 LKSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 91 lksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T 131 (325)
-+.+.+.. .+..|+||... +.|.-||-.=+.+|++||+..
T Consensus 85 ~~~~~igt-h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 85 GNEDQIGT-HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred Ccceeecc-CCCceEEEEeeccCCeEEEcccCccEEEEeccc
Confidence 86665544 34778888876 778899999999999999987
No 27
>KOG0305|consensus
Probab=96.27 E-value=0.18 Score=52.31 Aligned_cols=215 Identities=16% Similarity=0.167 Sum_probs=132.2
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCe-EEEEcCCCC
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNK-IHVVDPKSL 91 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnk-I~VIn~~Tl 91 (325)
.+.|+++.+. .+.+-||..+|.|-||++.. ......+..+. ..-|.||.--...+=+|+++. |...|....
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-----~k~~~~~~~~h-~~rvg~laW~~~~lssGsr~~~I~~~dvR~~ 290 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-----QKKTRTLRGSH-ASRVGSLAWNSSVLSSGSRDGKILNHDVRIS 290 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhh-----ccccccccCCc-CceeEEEeccCceEEEecCCCcEEEEEEecc
Confidence 7899999997 77899999999999998533 23334444432 245767666666677888866 777777666
Q ss_pred ce----eEecCCCCCceeEEEEeCCeEEE-EEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceeecccccc
Q psy2153 92 KS----FDAHPRRESQVRQMTWAGDGVWV-SIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAET 166 (325)
Q Consensus 92 ks----f~~~~~~~~~V~~Ma~~G~GVWi-S~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~~~~~~~ 166 (325)
+. ...|. .+|--|.++.++... |.-+|..+.+||..+.+.++.+.--..--|.+. +-...-.-.++-||
T Consensus 291 ~~~~~~~~~H~---qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a-wcP~q~~lLAsGGG-- 364 (484)
T KOG0305|consen 291 QHVVSTLQGHR---QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA-WCPWQSGLLATGGG-- 364 (484)
T ss_pred hhhhhhhhccc---ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEee-eCCCccCceEEcCC--
Confidence 22 33344 778889998888655 455799999999999898888876544334331 00000011112222
Q ss_pred ccccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCe--ee--EeCCCCccccceeeeecCCc
Q psy2153 167 IISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSR--LW--IGTASGKAPSGVRVFSEPAT 242 (325)
Q Consensus 167 ~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~--LW--iGTs~G~~~~~~~~~~~p~~ 242 (325)
....+|+-|+... ..+|-+|- ...+|++|+-.+.. |- .|++... +++..-|..
T Consensus 365 ----------s~D~~i~fwn~~~--g~~i~~vd-------tgsQVcsL~Wsk~~kEi~sthG~s~n~----i~lw~~ps~ 421 (484)
T KOG0305|consen 365 ----------SADRCIKFWNTNT--GARIDSVD-------TGSQVCSLIWSKKYKELLSTHGYSENQ----ITLWKYPSM 421 (484)
T ss_pred ----------CcccEEEEEEcCC--CcEecccc-------cCCceeeEEEcCCCCEEEEecCCCCCc----EEEEecccc
Confidence 1223444444321 11222222 25778888877765 32 2333332 355555521
Q ss_pred cccCCCccccccccccceeeccccCCceeEEEeecCC
Q psy2153 243 SVITPGTFIPYCSMAQAQLSFHGHRDAVKFFVSVPGS 279 (325)
Q Consensus 243 ~~~t~~~~~p~~~~~~~~~s~hgH~g~V~Fl~~v~~~ 279 (325)
+.+..+.||+..|=+|+.-|..
T Consensus 422 ---------------~~~~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 422 ---------------KLVAELLGHTSRVLYLALSPDG 443 (484)
T ss_pred ---------------ceeeeecCCcceeEEEEECCCC
Confidence 2345689999999999988864
No 28
>KOG0281|consensus
Probab=96.24 E-value=0.012 Score=58.59 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=47.5
Q ss_pred CE-EEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceee
Q psy2153 73 NK-VWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 73 ~~-LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
++ +--|+|++ |.|.++.|. ..+..|. .-|.|+-.-| -.-+|-+.+.+|||||++...+|.
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~gHk---RGIAClQYr~-rlvVSGSSDntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK---RGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLR 394 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhhccc---ccceehhccC-eEEEecCCCceEEEEeccccHHHH
Confidence 44 44588887 999999998 6777888 5577776654 566799999999999999998873
No 29
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.16 E-value=0.11 Score=51.83 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=93.8
Q ss_pred CCCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc--CC--C--CCceeeeee-eCCEEEE
Q psy2153 5 HPTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GL--P--HHSVRSLAA-VYNKVWC 77 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L--G~--~--~~PV~cml~-v~~~LW~ 77 (325)
.-|.+.+|..|+-.+=....+..-++-..||+++.+.-+.+|. ...+...+ +. | ..| .... =+..+|.
T Consensus 137 ~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~---~~~~~~~vf~~~~~~v~~rP--~~~~~dg~~~~v 211 (352)
T TIGR02658 137 GKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN---PKIKPTEVFHPEDEYLINHP--AYSNKSGRLVWP 211 (352)
T ss_pred CCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc---eEEeeeeeecCCccccccCC--ceEcCCCcEEEE
Confidence 4577888999997666666777888889999999998877775 11233334 31 0 255 2233 2467899
Q ss_pred EECCeEEEEc-----CCCCceeEecCC---------CCCceeEEEEe--CCeEEEEE---------eCCCeEEEEecCcc
Q psy2153 78 GYKNKIHVVD-----PKSLKSFDAHPR---------RESQVRQMTWA--GDGVWVSI---------RLDSTLRMYNAHTY 132 (325)
Q Consensus 78 g~gnkI~VIn-----~~Tlksf~~~~~---------~~~~V~~Ma~~--G~GVWiS~---------~~ss~IrL~ha~T~ 132 (325)
.+.++|++|| ++.++.++.-.. ..-|. ++.. |.-+|++. ..+..|.++|++|.
T Consensus 212 s~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~--ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 212 TYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ--VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred ecCCeEEEEecCCCcceecceeeeccccccccccCCCccee--EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 9999999999 555544432211 11233 5554 77799965 33368999999999
Q ss_pred ceeeeeecchhhhhhc
Q psy2153 133 QHLQDVDIEPYVSKML 148 (325)
Q Consensus 133 e~LqdIdIa~~v~~~l 148 (325)
|.+..|.+...+..+-
T Consensus 290 kvi~~i~vG~~~~~ia 305 (352)
T TIGR02658 290 KRLRKIELGHEIDSIN 305 (352)
T ss_pred eEEEEEeCCCceeeEE
Confidence 9999999987665544
No 30
>KOG0294|consensus
Probab=95.98 E-value=0.47 Score=46.87 Aligned_cols=217 Identities=20% Similarity=0.175 Sum_probs=136.7
Q ss_pred CCCCccceeeCC-CceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC----EEEEE
Q psy2153 4 PHPTPYPLNKIL-DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN----KVWCG 78 (325)
Q Consensus 4 ~~~~~L~~IkL~-dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~----~LW~g 78 (325)
|+.++++...=. .+++|+....-+|--|=.|-+|-||+-..-.+ ... |-+++..|+++..-.. .|-.|
T Consensus 31 ~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~q-----lg~--ll~HagsitaL~F~~~~S~shLlS~ 103 (362)
T KOG0294|consen 31 PTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQ-----LGI--LLSHAGSITALKFYPPLSKSHLLSG 103 (362)
T ss_pred eeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhh-----hcc--eeccccceEEEEecCCcchhheeee
Confidence 445555555444 37788777776777777777999998432211 011 1123467999877753 45555
Q ss_pred EC-CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccc
Q psy2153 79 YK-NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTF 153 (325)
Q Consensus 79 ~g-nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~ 153 (325)
+. .+|.+.+..+- ++|.+|. .+|+.++....| +-+|+..+.++|+|+-.+.+.-.-.++.+.-+.+.
T Consensus 104 sdDG~i~iw~~~~W~~~~slK~H~---~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~----- 175 (362)
T KOG0294|consen 104 SDDGHIIIWRVGSWELLKSLKAHK---GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVS----- 175 (362)
T ss_pred cCCCcEEEEEcCCeEEeeeecccc---cccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeE-----
Confidence 55 56999999886 8888888 669999998666 99999999999999999999877777765533322
Q ss_pred cccceeeccccccccccCccccCCCccccccccccccceeee-----eccCCCCCCCcceeEEE-EEEeeCCeeeEeCCC
Q psy2153 154 CSCVTIRTLLAETIISPFGWYANNPADILESFTVCQSHLLCI-----ASVPGTGKLGFSFVRIT-ALLISSSRLWIGTAS 227 (325)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci-----~~vp~~~~~~~~~~riT-sLl~~~~~LWiGTs~ 227 (325)
|+... +.|.+.-+...=| |||-+.-++ +.|+- +.-..++.|.+|-.+
T Consensus 176 -------------------w~~~G-----d~F~v~~~~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 176 -------------------WSPQG-----DHFVVSGRNKIDIYQLDNASVFREIEN---PKRILCATFLDGSELLVGGDN 228 (362)
T ss_pred -------------------EcCCC-----CEEEEEeccEEEEEecccHhHhhhhhc---cccceeeeecCCceEEEecCC
Confidence 33211 1222222222212 222233232 23343 344467789999999
Q ss_pred CccccceeeeecCCccccCCCccccccccccceeeccccCCceeEEEeecCCCC
Q psy2153 228 GKAPSGVRVFSEPATSVITPGTFIPYCSMAQAQLSFHGHRDAVKFFVSVPGSGG 281 (325)
Q Consensus 228 G~~~~~~~~~~~p~~~~~t~~~~~p~~~~~~~~~s~hgH~g~V~Fl~~v~~~~~ 281 (325)
+.+ ++.-.. . -.|+| .|-||...||=+.....+..
T Consensus 229 ~~i----~~~D~d---s-----~~~~~-------~~~AH~~RVK~i~~~~~~~~ 263 (362)
T KOG0294|consen 229 EWI----SLKDTD---S-----DTPLT-------EFLAHENRVKDIASYTNPEH 263 (362)
T ss_pred ceE----EEeccC---C-----Cccce-------eeecchhheeeeEEEecCCc
Confidence 874 333221 1 23454 47899999998888776543
No 31
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.95 E-value=0.27 Score=44.18 Aligned_cols=123 Identities=11% Similarity=0.179 Sum_probs=70.7
Q ss_pred eCCCceeeeEEe-C-CeEEEEec-CCcEEEEEcCCCCCCCCCCCeEEEcCCC------CCceeeeee-eCCEEEEEEC--
Q psy2153 13 KILDTALPPVHV-Q-GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLGLP------HHSVRSLAA-VYNKVWCGYK-- 80 (325)
Q Consensus 13 kL~dsVl~I~~~-~-~~VfVgLA-NGtLaVF~R~~~g~WD~~~~~~I~LG~~------~~PV~cml~-v~~~LW~g~g-- 80 (325)
..+..+.++.+. + ..+|++.. +|+|.+|+...... .+.+....+ ..|...... -++.+|++.+
T Consensus 154 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~ 228 (300)
T TIGR03866 154 LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA 228 (300)
T ss_pred EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCC
Confidence 333444455543 3 34656653 78888887543211 112221110 122222111 2356677654
Q ss_pred CeEEEEcCCCCceeEecCCCCCceeEEEEeCC--eEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 81 NKIHVVDPKSLKSFDAHPRRESQVRQMTWAGD--GVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 81 nkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~--GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
++|.++|.++.+...... ....+.+++.+.+ .++++-..+..|++||.++.+.++.|-+.
T Consensus 229 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 229 NRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 679999998874321111 1245778887644 46666667899999999999999998764
No 32
>KOG0316|consensus
Probab=95.90 E-value=0.092 Score=50.17 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=95.9
Q ss_pred CCccceee-CCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCe
Q psy2153 6 PTPYPLNK-ILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNK 82 (325)
Q Consensus 6 ~~~L~~Ik-L~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnk 82 (325)
++|.+-+. -+|.|++|.-.+..+.+|-+||++-.|+-.. |+--.+ -+| +||+|...-. +.+-++|=+.
T Consensus 135 ~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~-G~l~sD-----y~g---~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 135 FEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRK-GTLSSD-----YFG---HPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred CCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeec-ceeehh-----hcC---CcceeEEecCCCCEEEEeeccc
Confidence 44444432 4689999999999999999999999999544 321111 134 5999987775 6888999877
Q ss_pred -EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 83 -IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 83 -I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
+..||-+|. +++.-|.+.+-.+.|-....+-.-+|.+.+..+.+||-.....+..+..-.
T Consensus 206 tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 206 TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC
Confidence 899999887 778888887777776544445555699999999999998887776665543
No 33
>PTZ00420 coronin; Provisional
Probab=95.89 E-value=0.3 Score=51.53 Aligned_cols=123 Identities=8% Similarity=0.095 Sum_probs=82.1
Q ss_pred CCceeeeEEeC---CeEEEEecCCcEEEEEcCCCCC--CCCCCCeEEEcCCCCCceeeeeeeCC--EEE-EEEC-CeEEE
Q psy2153 15 LDTALPPVHVQ---GRVVCALADGSVAIFRRGPDGQ--WDLSKYHTVTLGLPHHSVRSLAAVYN--KVW-CGYK-NKIHV 85 (325)
Q Consensus 15 ~dsVl~I~~~~---~~VfVgLANGtLaVF~R~~~g~--WD~~~~~~I~LG~~~~PV~cml~v~~--~LW-~g~g-nkI~V 85 (325)
+++|+++.+.. +.+..|-.||+|.||+-..++. .....+ ...+.....+|+++....+ .+- .|+. +.|.+
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p-~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDP-QCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccc-eEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 36899999973 4677888999999998544331 111112 1123222468988877752 333 3443 56999
Q ss_pred EcCCCCc-eeEecCCCCCceeEEEEeCCeEEEE-EeCCCeEEEEecCccceeeeeec
Q psy2153 86 VDPKSLK-SFDAHPRRESQVRQMTWAGDGVWVS-IRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 86 In~~Tlk-sf~~~~~~~~~V~~Ma~~G~GVWiS-~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
.|.++.+ .+.... ...|+.++++.+|=.++ ...+..|++||..+.+.++++..
T Consensus 153 WDl~tg~~~~~i~~--~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g 207 (568)
T PTZ00420 153 WDIENEKRAFQINM--PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI 207 (568)
T ss_pred EECCCCcEEEEEec--CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 9998873 333322 25799999986664444 45688999999999999988764
No 34
>KOG0646|consensus
Probab=95.53 E-value=0.11 Score=53.21 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=87.9
Q ss_pred ceeeeEEe----CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC-CeEEEEcCC
Q psy2153 17 TALPPVHV----QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPK 89 (325)
Q Consensus 17 sVl~I~~~----~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g-nkI~VIn~~ 89 (325)
+|++|..- +.|||-+=.|-++-+|+-..+- -.+++-.| .+++||.+= +-.+|+|.. ++|++++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-------LLlti~fp-~si~av~lDpae~~~yiGt~~G~I~~~~~~ 247 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-------LLLTITFP-SSIKAVALDPAERVVYIGTEEGKIFQNLLF 247 (476)
T ss_pred eeEEEEecCCCccceEEEecCCceEEEEEeccce-------eeEEEecC-CcceeEEEcccccEEEecCCcceEEeeehh
Confidence 67777764 4477777777777777643321 23455555 678886543 578999887 679999866
Q ss_pred CCc-------------------eeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeee-cchhhhhhc
Q psy2153 90 SLK-------------------SFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVD-IEPYVSKML 148 (325)
Q Consensus 90 Tlk-------------------sf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdId-Ia~~v~~~l 148 (325)
.+. .|.-| ..++.|+|++.+-+| +-+|-..+..+++||..+.|++..+- -...|+++.
T Consensus 248 ~~~~~~~~v~~k~~~~~~t~~~~~~Gh-~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~ 326 (476)
T KOG0646|consen 248 KLSGQSAGVNQKGRHEENTQINVLVGH-ENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQ 326 (476)
T ss_pred cCCcccccccccccccccceeeeeccc-cCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeE
Confidence 552 11222 234799999998666 88999999999999999999998877 556666655
No 35
>KOG0266|consensus
Probab=95.53 E-value=0.22 Score=50.51 Aligned_cols=109 Identities=19% Similarity=0.317 Sum_probs=76.4
Q ss_pred ceeeeEEe-CC-eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCe-EEEEcCCCC
Q psy2153 17 TALPPVHV-QG-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~~-~~-~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnk-I~VIn~~Tl 91 (325)
.|.++.+. ++ .+.-|-.|++|-||+...++ ...+++. |. ..+|.|+.... +.+-.|+.+. |.|.|.++.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~----~~~~~l~-gH-~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~ 278 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG----RNLKTLK-GH-STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG 278 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCC----eEEEEec-CC-CCceEEEEecCCCCEEEEecCCCcEEEEeccCC
Confidence 67777775 33 45555666788888763322 2334444 65 47899988775 3555566655 999999986
Q ss_pred ---ceeEecCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecCcccee
Q psy2153 92 ---KSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTYQHL 135 (325)
Q Consensus 92 ---ksf~~~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~T~e~L 135 (325)
+.++.|. ..|+.++...+| +|.+ +.+..||+||.++.+.+
T Consensus 279 ~~~~~l~~hs---~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~ 323 (456)
T KOG0266|consen 279 ECVRKLKGHS---DGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKL 323 (456)
T ss_pred eEEEeeeccC---CceEEEEECCCCCEEEEc-CCCccEEEEECCCCcee
Confidence 5677777 678888887555 5555 77999999999999954
No 36
>KOG2055|consensus
Probab=95.49 E-value=0.22 Score=51.10 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=94.1
Q ss_pred CccceeeCCC---------ceeeeEEeCCe--EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CE
Q psy2153 7 TPYPLNKILD---------TALPPVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NK 74 (325)
Q Consensus 7 ~~L~~IkL~d---------sVl~I~~~~~~--VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~ 74 (325)
+.|+--+|+| .|+|+-++.++ +++|=-||+|-+|. -||.-+. --+.+.|-. .||.|..... ++
T Consensus 196 ~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifq--vDGk~N~-~lqS~~l~~--fPi~~a~f~p~G~ 270 (514)
T KOG2055|consen 196 GTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQ--VDGKVNP-KLQSIHLEK--FPIQKAEFAPNGH 270 (514)
T ss_pred ceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEE--ecCccCh-hheeeeecc--CccceeeecCCCc
Confidence 4566666665 68899888765 77788899999998 4565322 113455554 8999988774 33
Q ss_pred -EEE-EECCe-EEEEcCCCCceeEecCC---CCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeecchhhhhh
Q psy2153 75 -VWC-GYKNK-IHVVDPKSLKSFDAHPR---RESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 75 -LW~-g~gnk-I~VIn~~Tlksf~~~~~---~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
+-+ +.+.+ .|+.|.++-|--.+++- ++..+....++..+=+|++.. .+.|.|-|+.|.|++..+-|.-.|+..
T Consensus 271 ~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~ 350 (514)
T KOG2055|consen 271 SVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDF 350 (514)
T ss_pred eEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeE
Confidence 444 44444 88999888632222221 134555566665666777764 788999999999999999998877666
Q ss_pred c
Q psy2153 148 L 148 (325)
Q Consensus 148 l 148 (325)
.
T Consensus 351 ~ 351 (514)
T KOG2055|consen 351 T 351 (514)
T ss_pred E
Confidence 5
No 37
>KOG0649|consensus
Probab=95.47 E-value=0.12 Score=49.58 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=85.0
Q ss_pred ceeeeEEeCCeEEEEecCCcEEEEEcCC-------CCCCCCCCCeEEE-cCCCCCceeeeeee--CCEEEEEECCe-EEE
Q psy2153 17 TALPPVHVQGRVVCALADGSVAIFRRGP-------DGQWDLSKYHTVT-LGLPHHSVRSLAAV--YNKVWCGYKNK-IHV 85 (325)
Q Consensus 17 sVl~I~~~~~~VfVgLANGtLaVF~R~~-------~g~WD~~~~~~I~-LG~~~~PV~cml~v--~~~LW~g~gnk-I~V 85 (325)
+|..+++.+..++ +-++|.+.-+.=+. -..|...+|.... +-.| -|..|.+. ++.+..|-|+. +|-
T Consensus 64 piy~~~f~d~~Ll-s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evP--eINam~ldP~enSi~~AgGD~~~y~ 140 (325)
T KOG0649|consen 64 PIYYLAFHDDFLL-SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVP--EINAMWLDPSENSILFAGGDGVIYQ 140 (325)
T ss_pred Ceeeeeeehhhee-eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCC--ccceeEeccCCCcEEEecCCeEEEE
Confidence 7888888876554 45678887766321 1258888875542 2222 27888777 57776655755 999
Q ss_pred EcCCCC---ceeEecCCCCCceeEEEE-eCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 86 VDPKSL---KSFDAHPRRESQVRQMTW-AGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 86 In~~Tl---ksf~~~~~~~~~V~~Ma~-~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+|.++. ..|.-|+ .-|-+++. ...+--+|-..+.++|+||.+|.+|.+.|..-
T Consensus 141 ~dlE~G~i~r~~rGHt---DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 141 VDLEDGRIQREYRGHT---DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred EEecCCEEEEEEcCCc---ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 999998 4677777 45666665 45666679999999999999999999988754
No 38
>KOG0284|consensus
Probab=95.32 E-value=0.034 Score=56.18 Aligned_cols=113 Identities=17% Similarity=0.304 Sum_probs=83.6
Q ss_pred eeCCCceeeeEEeC--CeEEEEecCCcEEEEEcCCCCCCCCCCCeEE-EcCCCCCceeeeeeeCCEEEEEECCe---EEE
Q psy2153 12 NKILDTALPPVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGYKNK---IHV 85 (325)
Q Consensus 12 IkL~dsVl~I~~~~--~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I-~LG~~~~PV~cml~v~~~LW~g~gnk---I~V 85 (325)
.|.+-+|..+.... .++.+|.+.|.+..+.-.. - +.++| .-- .+|||+|....+..|.-+|++ |++
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~---f---nFEtilQaH--Ds~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS---F---NFETILQAH--DSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCce---e---eHHHHhhhh--cccceeEEEccCCCEEEEcCCCceEEe
Confidence 46666777777753 5899999999877665100 0 11222 222 389999999999999999877 777
Q ss_pred EcCCCC--ceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccce
Q psy2153 86 VDPKSL--KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 86 In~~Tl--ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
.++.-. |.+.+|+. .+|++|+-+ .+-++++++.+++|++||..-.+.
T Consensus 165 WqpnmnnVk~~~ahh~--eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke 214 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHA--EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE 214 (464)
T ss_pred cccchhhhHHhhHhhh--hhhheeccCCCCceeEEecCCCeEEEEeccCCch
Confidence 776544 88877763 679999987 667999999999999999876653
No 39
>KOG0291|consensus
Probab=95.14 E-value=0.31 Score=52.65 Aligned_cols=128 Identities=21% Similarity=0.338 Sum_probs=91.0
Q ss_pred CceeeeEEeCC--eEEEEecCCcEEEEEcCC-------------------------------CC---CCCCCCCeEE-Ec
Q psy2153 16 DTALPPVHVQG--RVVCALADGSVAIFRRGP-------------------------------DG---QWDLSKYHTV-TL 58 (325)
Q Consensus 16 dsVl~I~~~~~--~VfVgLANGtLaVF~R~~-------------------------------~g---~WD~~~~~~I-~L 58 (325)
+.+.|+.|..+ .+-.|-.||+|-||+-.. || -||+..++.. +.
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTF 430 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeee
Confidence 57889999866 677778888888877443 33 3888887442 33
Q ss_pred CCCCCce--eeeeee--CCEEEEEECCe--EEEEcCCCCceeEecCCCCCceeE--EEEeCCeEEEEEeCCCeEEEEecC
Q psy2153 59 GLPHHSV--RSLAAV--YNKVWCGYKNK--IHVVDPKSLKSFDAHPRRESQVRQ--MTWAGDGVWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 59 G~~~~PV--~cml~v--~~~LW~g~gnk--I~VIn~~Tlksf~~~~~~~~~V~~--Ma~~G~GVWiS~~~ss~IrL~ha~ 130 (325)
-.| .|+ .|+.+= ++-|.+|..+. |||.+.+|.|-+++-+-.+..|.. |-..|+ +-+|-+=+-|||+||..
T Consensus 431 t~P-~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if 508 (893)
T KOG0291|consen 431 TSP-EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIF 508 (893)
T ss_pred cCC-CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC-eEEeccccceEEEEEee
Confidence 333 455 343322 35667788887 999999999999888888899997 444444 77788899999999987
Q ss_pred cc-ceeeeeecchhhh
Q psy2153 131 TY-QHLQDVDIEPYVS 145 (325)
Q Consensus 131 T~-e~LqdIdIa~~v~ 145 (325)
.. ....++++.+.|.
T Consensus 509 ~s~~~vEtl~i~sdvl 524 (893)
T KOG0291|consen 509 SSSGTVETLEIRSDVL 524 (893)
T ss_pred ccCceeeeEeecccee
Confidence 66 3456666665543
No 40
>KOG1274|consensus
Probab=95.10 E-value=0.19 Score=55.00 Aligned_cols=116 Identities=9% Similarity=0.127 Sum_probs=87.2
Q ss_pred CCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC--Ce-EEEEcCCC
Q psy2153 14 ILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK--NK-IHVVDPKS 90 (325)
Q Consensus 14 L~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g--nk-I~VIn~~T 90 (325)
..+.|++|.+..+++.+|.-++++.+|..... +....| -.-..|+|++.+-++.=|++-| +- |+++|..+
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~-----~~~~iL--~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D 127 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG-----EEDTIL--ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD 127 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCC-----Ccccee--eeeeccceEEEEecCCcEEEeecCceeEEEEeccc
Confidence 66789999999999999999999999986542 121122 2223799999998875554444 33 99999988
Q ss_pred C---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeee
Q psy2153 91 L---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 91 l---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdId 139 (325)
. +.+.-|. .+|.++-....|-++|... +++|++|+..+.+....+.
T Consensus 128 ~s~~~~lrgh~---apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~ 177 (933)
T KOG1274|consen 128 SSQEKVLRGHD---APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT 177 (933)
T ss_pred cchheeecccC---CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence 8 3444444 8899999998898887765 9999999999887655443
No 41
>KOG0266|consensus
Probab=94.99 E-value=1.5 Score=44.52 Aligned_cols=186 Identities=19% Similarity=0.244 Sum_probs=111.3
Q ss_pred CCceeeeEE-eCCeEEE-EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEECCe-EEEEcCC
Q psy2153 15 LDTALPPVH-VQGRVVC-ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGYKNK-IHVVDPK 89 (325)
Q Consensus 15 ~dsVl~I~~-~~~~VfV-gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~gnk-I~VIn~~ 89 (325)
..+|.|... .+++.++ +.+++++.++.. .+.|+ .. ...+......|+++..-.+ .+..|+.++ |.|.+.+
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~--~~~~~-~~--~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKL--EGIKS-NL--LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeec--ccccc-hh--hccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 346676443 3444444 458888888875 33343 11 1122223577888777653 445555544 9999983
Q ss_pred CC----ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchh-hhhhcccccccccceeeccc
Q psy2153 90 SL----KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPY-VSKMLGMYTFCSCVTIRTLL 163 (325)
Q Consensus 90 Tl----ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~-v~~~l~~~~~~~~~~~~~~~ 163 (325)
.. +.|..|+ ..|++.+-...| .-+|.+.+.+||+||.++.+++..+..... |+.+- |...++.
T Consensus 234 ~~~~~~~~l~gH~---~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~----f~~d~~~---- 302 (456)
T KOG0266|consen 234 DDGRNLKTLKGHS---TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA----FSPDGNL---- 302 (456)
T ss_pred CCCeEEEEecCCC---CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE----ECCCCCE----
Confidence 33 6777777 678988888777 888999999999999999998888776542 22111 1111100
Q ss_pred cccccccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEee--CCeeeEeCCCCc
Q psy2153 164 AETIISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLIS--SSRLWIGTASGK 229 (325)
Q Consensus 164 ~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~--~~~LWiGTs~G~ 229 (325)
.+.+ +....++.|+.-..+.+|...+.+... .. .+++...+ ...||+++..+.
T Consensus 303 --------l~s~-s~d~~i~vwd~~~~~~~~~~~~~~~~~---~~-~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 303 --------LVSA-SYDGTIRVWDLETGSKLCLKLLSGAEN---SA-PVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred --------EEEc-CCCccEEEEECCCCceeeeecccCCCC---CC-ceeEEEECCCCcEEEEecCCCe
Confidence 0122 334566677664444335555555332 22 45555554 345888888876
No 42
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.99 E-value=1.2 Score=41.05 Aligned_cols=128 Identities=7% Similarity=0.056 Sum_probs=81.0
Q ss_pred CC-CccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCC----------CCceeeeeeeC-
Q psy2153 5 HP-TPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP----------HHSVRSLAAVY- 72 (325)
Q Consensus 5 ~~-~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~----------~~PV~cml~v~- 72 (325)
.+ +.+.++.+|+.+.+|.+.++.+++|..++ ..+++-+.+...+ ...++.. ..|+ .|..++
T Consensus 127 ~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 199 (275)
T PF00780_consen 127 SFSKLLKEISLPDPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSE-----LLDPSDSSSSFKSRNSSSKPL-GIFQLSD 199 (275)
T ss_pred cccceeEEEEcCCCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceE-----EeCccCCcchhhhcccCCCce-EEEEeCC
Confidence 35 78999999999999999999999999876 5555544322211 1222211 1343 455555
Q ss_pred CEEEEEECCeEEEEcCCCC--ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 73 NKVWCGYKNKIHVVDPKSL--KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 73 ~~LW~g~gnkI~VIn~~Tl--ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
+.+-..+.+.-+.+|..-. +.....= +..+..++.....+. ++.. ..|++|+.++.+++|.|+....
T Consensus 200 ~e~Ll~~~~~g~fv~~~G~~~r~~~i~W--~~~p~~~~~~~pyli-~~~~-~~iEV~~~~~~~lvQ~i~~~~~ 268 (275)
T PF00780_consen 200 NEFLLCYDNIGVFVNKNGEPSRKSTIQW--SSAPQSVAYSSPYLI-AFSS-NSIEVRSLETGELVQTIPLPNI 268 (275)
T ss_pred ceEEEEecceEEEEcCCCCcCcccEEEc--CCchhEEEEECCEEE-EECC-CEEEEEECcCCcEEEEEECCCE
Confidence 5555556666555565443 2111111 134556777665555 4555 4499999999999999997753
No 43
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.93 E-value=0.95 Score=42.93 Aligned_cols=129 Identities=12% Similarity=0.126 Sum_probs=78.2
Q ss_pred cceeeCCCceeeeEEe--CCeEEEEe-cCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC--C
Q psy2153 9 YPLNKILDTALPPVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK--N 81 (325)
Q Consensus 9 L~~IkL~dsVl~I~~~--~~~VfVgL-ANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g--n 81 (325)
...+.+++.+..|... .+++|++- .+|.|.+|+-+.+|... .....+. |. ..| .++... ++.+|+++. |
T Consensus 73 ~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-~~~~~~~-~~-~~~-~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 73 AAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-APIQIIE-GL-EGC-HSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred eeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-Cceeecc-CC-Ccc-cEeEeCCCCCEEEEeeCCCC
Confidence 3445566666666654 44577764 47899999976655321 1111111 21 123 333333 357887664 7
Q ss_pred eEEEEcCCCCceeE------ecCCCCCceeEEEEeCC--eEEEEEeCCCeEEEEecC----ccceeeeeecc
Q psy2153 82 KIHVVDPKSLKSFD------AHPRRESQVRQMTWAGD--GVWVSIRLDSTLRMYNAH----TYQHLQDVDIE 141 (325)
Q Consensus 82 kI~VIn~~Tlksf~------~~~~~~~~V~~Ma~~G~--GVWiS~~~ss~IrL~ha~----T~e~LqdIdIa 141 (325)
+|.|++.++.+.+. .........++|+.+.+ .+|++-..+..|.+|+.. +++.+|+++..
T Consensus 149 ~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 149 RIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred EEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 79999987653221 12223456778887654 588888889999999976 55677777653
No 44
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.85 E-value=0.53 Score=44.95 Aligned_cols=122 Identities=15% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCCccceeeCCC--ceeeeEEe---------CCeEEEEec---------C-CcEEEEEcCCCC--CCCCCCCeEEEcCCC
Q psy2153 5 HPTPYPLNKILD--TALPPVHV---------QGRVVCALA---------D-GSVAIFRRGPDG--QWDLSKYHTVTLGLP 61 (325)
Q Consensus 5 ~~~~L~~IkL~d--sVl~I~~~---------~~~VfVgLA---------N-GtLaVF~R~~~g--~WD~~~~~~I~LG~~ 61 (325)
.|+.+.++.|++ .|+|++.. ...+.||++ . |.|.+|+-...+ .+.+..-....+
T Consensus 11 ~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~--- 87 (321)
T PF03178_consen 11 TFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV--- 87 (321)
T ss_dssp TSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE---
T ss_pred CCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee---
Confidence 567888888886 67766653 357888887 3 999999965531 122222222333
Q ss_pred CCceeeeeeeCCEEEEEECCeEEEEcCCCCcee--EecCCCCCceeEEEEeCCeEEEEEeCCCe-EEEEec
Q psy2153 62 HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLKSF--DAHPRRESQVRQMTWAGDGVWVSIRLDST-LRMYNA 129 (325)
Q Consensus 62 ~~PV~cml~v~~~LW~g~gnkI~VIn~~Tlksf--~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~-IrL~ha 129 (325)
..||++|...+++|-+|.|++|++.+-+.-+.+ .+..+....|+.|...++-++++=-..|. +--|+.
T Consensus 88 ~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 88 KGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp SS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEET
T ss_pred cCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEEc
Confidence 368999999999999999999999876555422 12223345899999999988888766555 455676
No 45
>KOG0271|consensus
Probab=94.80 E-value=0.11 Score=52.26 Aligned_cols=114 Identities=18% Similarity=0.242 Sum_probs=79.4
Q ss_pred ceeeeEEeC-C-eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee------CCEEEEEEC--CeEEEE
Q psy2153 17 TALPPVHVQ-G-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV------YNKVWCGYK--NKIHVV 86 (325)
Q Consensus 17 sVl~I~~~~-~-~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v------~~~LW~g~g--nkI~VI 86 (325)
=|+|+.... + ++--|.-||+|.+|+...+++- --+|-.-..+|++|.-- +.+.-+.+. |.|.|.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIW 232 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW 232 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcc------cccccCcccceeEEeecccccCCCccceecccCCCCEEEE
Confidence 588888863 3 4555788999999986665431 01121113567776433 234444443 569999
Q ss_pred cCCCCc---eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 87 DPKSLK---SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 87 n~~Tlk---sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
|++..+ .+..|. ..|+|+.+.|+|.-+|-+.+.+|++|++...+++.++-
T Consensus 233 d~~~~~~~~~lsgHT---~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lk 285 (480)
T KOG0271|consen 233 DTKLGTCVRTLSGHT---ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELK 285 (480)
T ss_pred EccCceEEEEeccCc---cceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhc
Confidence 988763 445666 88999999999999999999999999999977665543
No 46
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=94.66 E-value=0.91 Score=40.74 Aligned_cols=103 Identities=12% Similarity=0.221 Sum_probs=65.1
Q ss_pred eEEEE-ecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEEC--CeEEEEcCCCCce---eEecC
Q psy2153 27 RVVCA-LADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK--NKIHVVDPKSLKS---FDAHP 98 (325)
Q Consensus 27 ~VfVg-LANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~g--nkI~VIn~~Tlks---f~~~~ 98 (325)
++|++ -.||+|.+|+.... +..+.+..+. . ++++.... ..+++..+ +.|+++|..+.+. +..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~-----~~~~~~~~~~--~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATL-----EVTRTFPVGQ--R-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCC-----ceEEEEECCC--C-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC
Confidence 45554 45889999985432 2224455443 2 45555443 35776544 6799999988733 32222
Q ss_pred CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 99 RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 99 ~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.+..++.+ |.-++++...+..|++||..+.+.+..++..
T Consensus 74 ----~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 74 ----DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred ----CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 23456665 3447777777889999999999888887643
No 47
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.42 E-value=0.89 Score=43.41 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=86.3
Q ss_pred CCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC--CCCceeeeeeeCCEEEEEECC-e
Q psy2153 6 PTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL--PHHSVRSLAAVYNKVWCGYKN-K 82 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~--~~~PV~cml~v~~~LW~g~gn-k 82 (325)
.+.+++.+++++|++|...++++.|| .+++|.+|+-..+. +.+.... ....+.++...++.+++|.-- .
T Consensus 79 l~~i~~~~~~g~V~ai~~~~~~lv~~-~g~~l~v~~l~~~~-------~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~s 150 (321)
T PF03178_consen 79 LKLIHSTEVKGPVTAICSFNGRLVVA-VGNKLYVYDLDNSK-------TLLKKAFYDSPFYITSLSVFKNYILVGDAMKS 150 (321)
T ss_dssp EEEEEEEEESS-EEEEEEETTEEEEE-ETTEEEEEEEETTS-------SEEEEEEE-BSSSEEEEEEETTEEEEEESSSS
T ss_pred EEEEEEEeecCcceEhhhhCCEEEEe-ecCEEEEEEccCcc-------cchhhheecceEEEEEEeccccEEEEEEcccC
Confidence 46778899999999999999995555 56799999955433 2333322 124789999999999999874 4
Q ss_pred EEEEcCCCC-ceeEe-cC-CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecC-----------ccceeeeeecchhhhh
Q psy2153 83 IHVVDPKSL-KSFDA-HP-RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAH-----------TYQHLQDVDIEPYVSK 146 (325)
Q Consensus 83 I~VIn~~Tl-ksf~~-~~-~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~-----------T~e~LqdIdIa~~v~~ 146 (325)
|+++.-+.- ++|.. .. .....++++... ++ ..+.......|.++-.. .++....+.+...|++
T Consensus 151 v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~ 229 (321)
T PF03178_consen 151 VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNS 229 (321)
T ss_dssp EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEE
T ss_pred EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccce
Confidence 888843222 22321 11 123556655444 33 77777888877766554 4566777888888777
Q ss_pred hc
Q psy2153 147 ML 148 (325)
Q Consensus 147 ~l 148 (325)
+.
T Consensus 230 ~~ 231 (321)
T PF03178_consen 230 FR 231 (321)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 48
>KOG0306|consensus
Probab=94.37 E-value=0.2 Score=54.01 Aligned_cols=116 Identities=22% Similarity=0.224 Sum_probs=82.8
Q ss_pred eeCCCceeeeEEeCCeE--EEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEECCe-EEEE
Q psy2153 12 NKILDTALPPVHVQGRV--VCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNK-IHVV 86 (325)
Q Consensus 12 IkL~dsVl~I~~~~~~V--fVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~gnk-I~VI 86 (325)
.+.+..|+|+.-+++.+ -||-|||.+-+|...++ ...+.+.--...|++|-.- +.+|--|+.+. |.|.
T Consensus 62 ~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~-------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvw 134 (888)
T KOG0306|consen 62 LKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESE-------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVW 134 (888)
T ss_pred hcccceEEEeeccCCcceEEEEecCceEEeeccCCC-------ceeeeecccccceEEEEEcccCceEeecCCCccEEEE
Confidence 34557899999999887 89999999999985443 1234442224789987655 46666666654 8888
Q ss_pred cCCCC---ceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeee
Q psy2153 87 DPKSL---KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 87 n~~Tl---ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~Lqd 137 (325)
|.-.- -.+.-|. .+|+.+--. ++.+-+|...++.|++||-+|..+...
T Consensus 135 DlV~E~Gl~rL~GHk---d~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~T 186 (888)
T KOG0306|consen 135 DLVGEEGLFRLRGHK---DSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFET 186 (888)
T ss_pred EeccceeeEEeecch---HHHhHHhccCCCeEEEEeccCceEEEEecccceeeeE
Confidence 86443 3445555 557665554 488999999999999999999876543
No 49
>KOG0276|consensus
Probab=94.35 E-value=2.1 Score=45.80 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=52.9
Q ss_pred CceeeeeeeC--CEEEE--EECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccc
Q psy2153 63 HSVRSLAAVY--NKVWC--GYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 63 ~PV~cml~v~--~~LW~--g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
.-|.|.-... |+=+. |.-+. |.|.|-.|- +.++-|. ..|+...-. .--+.++.+.++++|+||+.||+
T Consensus 184 kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 184 KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 5677776553 44444 33333 888887776 6777777 556654433 45689999999999999999999
Q ss_pred eeeeeecc
Q psy2153 134 HLQDVDIE 141 (325)
Q Consensus 134 ~LqdIdIa 141 (325)
.-...|..
T Consensus 261 lE~tLn~g 268 (794)
T KOG0276|consen 261 LEKTLNYG 268 (794)
T ss_pred hhhhhhcC
Confidence 76555543
No 50
>KOG0310|consensus
Probab=94.31 E-value=0.6 Score=48.08 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=79.9
Q ss_pred EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC-EEEE-EECCeEEEEcCCCC-ceeEecCCCCCce
Q psy2153 28 VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN-KVWC-GYKNKIHVVDPKSL-KSFDAHPRRESQV 104 (325)
Q Consensus 28 VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~-~LW~-g~gnkI~VIn~~Tl-ksf~~~~~~~~~V 104 (325)
|+-|==||+|-+|+-...+ .+.+++.. ..||-.++.+.+ .+.+ |.||+|.|+|..+. +...-..+....|
T Consensus 169 vvtGsYDg~vrl~DtR~~~------~~v~elnh-g~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV 241 (487)
T KOG0310|consen 169 VVTGSYDGKVRLWDTRSLT------SRVVELNH-GCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV 241 (487)
T ss_pred EEecCCCceEEEEEeccCC------ceeEEecC-CCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceE
Confidence 5555566777666632222 24555543 479999999974 6665 55688999999977 3222111233789
Q ss_pred eEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 105 RQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 105 ~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
|||..++++ =-+|-..|..+++||+.+++.........+|..|-
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsia 286 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIA 286 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEE
Confidence 999988654 44588889999999999999999999988765553
No 51
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=94.31 E-value=0.077 Score=35.74 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=27.0
Q ss_pred CccceeeCCCce-eeeEEeCCeEEEEecCCcEEEEEcC
Q psy2153 7 TPYPLNKILDTA-LPPVHVQGRVVCALADGSVAIFRRG 43 (325)
Q Consensus 7 ~~L~~IkL~dsV-l~I~~~~~~VfVgLANGtLaVF~R~ 43 (325)
|.+|+.+++..+ .++...+++||++..||+|..|+..
T Consensus 2 ~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 2 KVLWSYDTGGPIWSSPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp -EEEEEE-SS---S--EECTSEEEEE-TTSEEEEEETT
T ss_pred ceeEEEECCCCcCcCCEEECCEEEEEcCCCEEEEEeCC
Confidence 578999999877 5588899999999999999999853
No 52
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.27 E-value=0.37 Score=47.94 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=67.5
Q ss_pred CeEEEEec-CCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee---CCEEEEEEC-CeEEEEcCCCCc---eeEec
Q psy2153 26 GRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV---YNKVWCGYK-NKIHVVDPKSLK---SFDAH 97 (325)
Q Consensus 26 ~~VfVgLA-NGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v---~~~LW~g~g-nkI~VIn~~Tlk---sf~~~ 97 (325)
|-++|... +|+|+|.+-... +.-..|..|. .+ ...+.. +..+|++++ +.|.+||+.+.+ +..+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~-----~~~~~i~~~~--~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G 77 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN-----KVVARIPTGG--AP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG 77 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT------SEEEEEE-ST--TE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S
T ss_pred cEEEEEecCCCEEEEEECCCC-----eEEEEEcCCC--Cc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC
Confidence 34556664 689999983221 2335677765 33 332222 356999987 569999999994 44443
Q ss_pred CCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 98 PRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 98 ~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
. .-..++.+ |..++++......+.++|++|+|.++.|....
T Consensus 78 ~----~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 78 G----NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp S----EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred C----CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 3 33455654 66799999999999999999999999998753
No 53
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.25 E-value=1.2 Score=43.42 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=87.9
Q ss_pred CCCCCccceeeCCCc----eee--eEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCe-EEEcCCCCCceeeeeeeCCE
Q psy2153 3 YPHPTPYPLNKILDT----ALP--PVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYH-TVTLGLPHHSVRSLAAVYNK 74 (325)
Q Consensus 3 ~~~~~~L~~IkL~ds----Vl~--I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~-~I~LG~~~~PV~cml~v~~~ 74 (325)
++.-+.+|..++... ... ..+.+++||++..+|.|.-|+..... .|...... .-.++ .|+. .-+++
T Consensus 40 ~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~---~~~~---~~~G~ 113 (370)
T COG1520 40 NTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS---GPIL---GSDGK 113 (370)
T ss_pred ccCcceeeeeecccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc---CceE---EeCCe
Confidence 345667777664442 222 37889999999999999999876544 58644332 12222 3432 22789
Q ss_pred EEEEECCe-EEEEcCCCCc---eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 75 VWCGYKNK-IHVVDPKSLK---SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 75 LW~g~gnk-I~VIn~~Tlk---sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
+|++..+. +|++|+++.+ ++++.. ...-....+.....||... .+..+...++.|.+.+.++++.+.
T Consensus 114 i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 114 IYVGSWDGKLYALDASTGTLVWSRNVGG-SPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred EEEecccceEEEEECCCCcEEEEEecCC-CeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc
Confidence 99999988 9999998772 223322 1122233444555566555 789999999999999999888753
No 54
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.23 E-value=0.87 Score=46.63 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=81.8
Q ss_pred CCCCccceeeCCC---ceeeeEEeCCeEEEEecCCcEEEEEcCCC-CCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEE
Q psy2153 4 PHPTPYPLNKILD---TALPPVHVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCG 78 (325)
Q Consensus 4 ~~~~~L~~IkL~d---sVl~I~~~~~~VfVgLANGtLaVF~R~~~-g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g 78 (325)
+..+..|+.++++ .-..-+..+++||++.++|.|..++...+ -.|..+......-..+...-+.....+ ++|+++
T Consensus 37 ~~~~~~W~~~~~~~~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~ 116 (488)
T cd00216 37 KKLKVAWTFSTGDERGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG 116 (488)
T ss_pred hcceeeEEEECCCCCCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe
Confidence 3456788888873 22245677999999999999999986443 258644321100011000011223345 899999
Q ss_pred EC-CeEEEEcCCCCce-eEecCCCC----Ccee-EEEEeCCeEEEEE--------eCCCeEEEEecCccceeeeeecc
Q psy2153 79 YK-NKIHVVDPKSLKS-FDAHPRRE----SQVR-QMTWAGDGVWVSI--------RLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 79 ~g-nkI~VIn~~Tlks-f~~~~~~~----~~V~-~Ma~~G~GVWiS~--------~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+. +.|+.+|++|.+. +....... ..+. ..+..+.-|.+.. ..+..|..+|++|.+.+...+..
T Consensus 117 ~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~ 194 (488)
T cd00216 117 TFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT 194 (488)
T ss_pred cCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence 86 5699999999842 22221111 0111 1223332333332 23578999999999999999885
No 55
>PLN00181 protein SPA1-RELATED; Provisional
Probab=94.22 E-value=1.7 Score=46.99 Aligned_cols=106 Identities=15% Similarity=0.167 Sum_probs=73.7
Q ss_pred CceeeeEEe--C-CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee---CCEEEEEECC-eEEEEcC
Q psy2153 16 DTALPPVHV--Q-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV---YNKVWCGYKN-KIHVVDP 88 (325)
Q Consensus 16 dsVl~I~~~--~-~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v---~~~LW~g~gn-kI~VIn~ 88 (325)
+.|.++.+. + +.++.|-.||+|.+|+..... ....+.. ..+|.|+... +..+..|+.+ .|++.|.
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-----~~~~~~~---~~~v~~v~~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-----SIGTIKT---KANICCVQFPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-----EEEEEec---CCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 579999986 3 457778889999999864321 1123332 2467777653 3467777764 5999998
Q ss_pred CCCc----eeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCcc
Q psy2153 89 KSLK----SFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 89 ~Tlk----sf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~ 132 (325)
++.+ .+..|. ..|+.+........++...+.+|++||..+.
T Consensus 648 ~~~~~~~~~~~~h~---~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 648 RNPKLPLCTMIGHS---KTVSYVRFVDSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CCCCccceEecCCC---CCEEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence 7652 344444 6788888876677889999999999998653
No 56
>KOG2096|consensus
Probab=94.05 E-value=0.58 Score=46.50 Aligned_cols=122 Identities=15% Similarity=0.200 Sum_probs=74.0
Q ss_pred CceeeeEEe-CCeEEE-EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCC-CceeeeeeeCC----EEEEEECCeEEEEcC
Q psy2153 16 DTALPPVHV-QGRVVC-ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH-HSVRSLAAVYN----KVWCGYKNKIHVVDP 88 (325)
Q Consensus 16 dsVl~I~~~-~~~VfV-gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~-~PV~cml~v~~----~LW~g~gnkI~VIn~ 88 (325)
+.|+|+.+. +++-|| ..+|++|.+|+-.. ...+.+++|....+. +| +......| -+||..||+++|...
T Consensus 87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D---F~~~eHr~~R~nve~dhp-T~V~FapDc~s~vv~~~~g~~l~vyk~ 162 (420)
T KOG2096|consen 87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRD---FENKEHRCIRQNVEYDHP-TRVVFAPDCKSVVVSVKRGNKLCVYKL 162 (420)
T ss_pred CceeeeEEcCCCceeEEEeCCceEEEEecch---hhhhhhhHhhccccCCCc-eEEEECCCcceEEEEEccCCEEEEEEe
Confidence 699999995 555555 45678899997321 112333444332211 33 22233333 379999999998864
Q ss_pred CCC----cee--------EecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 89 KSL----KSF--------DAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 89 ~Tl----ksf--------~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.-- -+| +.+.-....|-.+=.++.+ +-+|.+.+..|.|||-+ .+.||.||...
T Consensus 163 ~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 163 VKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred eecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 322 011 1222122344445555555 45678889999999999 99999999764
No 57
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.98 E-value=0.11 Score=43.95 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=51.1
Q ss_pred CCCCCccceeeCCCceeeeEEe-CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-C-----EE
Q psy2153 3 YPHPTPYPLNKILDTALPPVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-N-----KV 75 (325)
Q Consensus 3 ~~~~~~L~~IkL~dsVl~I~~~-~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~-----~L 75 (325)
|..-+.+++++-.+.|++|++. .++.--||+||+|-||+|.. ..|-..+ . +-+.||...+ + .|
T Consensus 30 f~~~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-RlWRiKS--------K-~~~~~~~~~D~~gdG~~eL 99 (111)
T PF14783_consen 30 FKGDEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ-RLWRIKS--------K-NQVTSMAFYDINGDGVPEL 99 (111)
T ss_pred EeCCcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcc-eeeeecc--------C-CCeEEEEEEcCCCCCceEE
Confidence 5566789999999999999997 45666799999999999854 5786543 2 3356777665 1 57
Q ss_pred EEEECC
Q psy2153 76 WCGYKN 81 (325)
Q Consensus 76 W~g~gn 81 (325)
-+|..|
T Consensus 100 I~Gwsn 105 (111)
T PF14783_consen 100 IVGWSN 105 (111)
T ss_pred EEEecC
Confidence 666553
No 58
>KOG1446|consensus
Probab=93.90 E-value=2.3 Score=41.84 Aligned_cols=122 Identities=13% Similarity=0.149 Sum_probs=84.8
Q ss_pred CCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC---CeEEEEcC
Q psy2153 14 ILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDP 88 (325)
Q Consensus 14 L~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g---nkI~VIn~ 88 (325)
..+.|++|-|.++ .+.++-.|-+|.+|+-..+. ..+.|.-=.-.--+-|.+-...++-.++. +.|.-++.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~-----~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGK-----QVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCc-----eeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 4779999999754 45556677799999854432 22333221101124455555577777766 34888888
Q ss_pred CCCc---eeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 89 KSLK---SFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 89 ~Tlk---sf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
.+.| -|.-|. ..|+.+..+ ++..++|-+.+-+|||||..+.++.--++...+
T Consensus 88 ~dNkylRYF~GH~---~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~ 143 (311)
T KOG1446|consen 88 HDNKYLRYFPGHK---KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR 143 (311)
T ss_pred ecCceEEEcCCCC---ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC
Confidence 7774 455555 778887776 557999999999999999999999888887753
No 59
>PTZ00420 coronin; Provisional
Probab=93.88 E-value=1.8 Score=45.75 Aligned_cols=124 Identities=13% Similarity=0.191 Sum_probs=73.1
Q ss_pred CCceeeeEEeCC--eEE-EEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CCE-EEEEEC-CeEEEEcC
Q psy2153 15 LDTALPPVHVQG--RVV-CALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNK-VWCGYK-NKIHVVDP 88 (325)
Q Consensus 15 ~dsVl~I~~~~~--~Vf-VgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~~-LW~g~g-nkI~VIn~ 88 (325)
.+.|.++.+... .++ .|-.||+|.||+-.... ....+.. ..+|+++... +++ |-++|. ++|.++|+
T Consensus 125 ~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-----~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~ 196 (568)
T PTZ00420 125 KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-----RAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDP 196 (568)
T ss_pred CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-----EEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEEC
Confidence 357888888752 344 45678999998854321 1122332 2578888765 344 444664 46999999
Q ss_pred CCC---ceeEecCCCCCceeEEE---EeC-CeEEEEEeCC----CeEEEEecCc-cceeeeeecchhhhhh
Q psy2153 89 KSL---KSFDAHPRRESQVRQMT---WAG-DGVWVSIRLD----STLRMYNAHT-YQHLQDVDIEPYVSKM 147 (325)
Q Consensus 89 ~Tl---ksf~~~~~~~~~V~~Ma---~~G-~GVWiS~~~s----s~IrL~ha~T-~e~LqdIdIa~~v~~~ 147 (325)
++. ++|..|...- ....+- .++ .+.+++...+ .+|+|||..+ .+.++.+.+......+
T Consensus 197 Rsg~~i~tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 197 RKQEIASSFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred CCCcEEEEEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 988 5667776321 111111 112 3466665544 3799999995 5677776665443333
No 60
>KOG3881|consensus
Probab=93.87 E-value=2.7 Score=42.52 Aligned_cols=134 Identities=12% Similarity=0.193 Sum_probs=79.4
Q ss_pred CCCCCCccceeeCC----CceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCC--eEEEcCCCCCceeeeeeeC--C
Q psy2153 2 EYPHPTPYPLNKIL----DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY--HTVTLGLPHHSVRSLAAVY--N 73 (325)
Q Consensus 2 ~~~~~~~L~~IkL~----dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~--~~I~LG~~~~PV~cml~v~--~ 73 (325)
|+++-..+|.++.- .+|-.+.+.++.+..++.+|.|-+.+-.. =|+... .-+..|. ++.-|-... .
T Consensus 88 E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~---~d~hss~l~~la~g~---g~~~~r~~~~~p 161 (412)
T KOG3881|consen 88 EFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKS---GDLHSSKLIKLATGP---GLYDVRQTDTDP 161 (412)
T ss_pred CCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEeccC---CccccccceeeecCC---ceeeeccCCCCC
Confidence 45566666666543 48899999999999999999999987432 222222 3344453 333332222 1
Q ss_pred EEEE--EEC--CeEEEEcCCCC-ceeEecCCCCCc-----------eeEEEEeCCeEEEEEeCCCeEEEEecCccc-eee
Q psy2153 74 KVWC--GYK--NKIHVVDPKSL-KSFDAHPRRESQ-----------VRQMTWAGDGVWVSIRLDSTLRMYNAHTYQ-HLQ 136 (325)
Q Consensus 74 ~LW~--g~g--nkI~VIn~~Tl-ksf~~~~~~~~~-----------V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e-~Lq 136 (325)
.+.+ |-. |-+.|.|.+.- |.|++..-+... ++.+--+....+.++.....+|+||+.+.+ +..
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 2222 222 33555555555 566665432211 111111126788999999999999998765 455
Q ss_pred eeecc
Q psy2153 137 DVDIE 141 (325)
Q Consensus 137 dIdIa 141 (325)
.||..
T Consensus 242 ~fd~~ 246 (412)
T KOG3881|consen 242 QFDFL 246 (412)
T ss_pred Eeccc
Confidence 55554
No 61
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=93.60 E-value=2.1 Score=39.41 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=46.5
Q ss_pred eeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCeEEEEcCCCC
Q psy2153 20 PPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSL 91 (325)
Q Consensus 20 ~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnkI~VIn~~Tl 91 (325)
|+.+.++++++|+.+| |.+|+......| .+.... .+|+.|.++. +.|-+=++.++++.+..++
T Consensus 2 c~~~~~~~L~vGt~~G-l~~~~~~~~~~~----~~i~~~----~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l 66 (275)
T PF00780_consen 2 CADSWGDRLLVGTEDG-LYVYDLSDPSKP----TRILKL----SSITQLSVLPELNLLLVLSDGQLYVYDLDSL 66 (275)
T ss_pred CcccCCCEEEEEECCC-EEEEEecCCccc----eeEeec----ceEEEEEEecccCEEEEEcCCccEEEEchhh
Confidence 6778899999999999 999986211111 122222 4599998887 7788878889999998888
No 62
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.57 E-value=1.1 Score=46.66 Aligned_cols=137 Identities=16% Similarity=0.099 Sum_probs=86.0
Q ss_pred CCccceeeCCCc---eeeeEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCC--CeEE-EcCCCCCce-eeeeeeCCEEEE
Q psy2153 6 PTPYPLNKILDT---ALPPVHVQGRVVCALADGSVAIFRRGPDG-QWDLSK--YHTV-TLGLPHHSV-RSLAAVYNKVWC 77 (325)
Q Consensus 6 ~~~L~~IkL~ds---Vl~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~--~~~I-~LG~~~~PV-~cml~v~~~LW~ 77 (325)
.++.|+.++.+. -..-+..+++||++-.+|.|.-++...+. .|..+. +..+ .... ...+ +.+...+++|++
T Consensus 47 L~~~W~~~~g~~~g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~-~~~~~rg~av~~~~v~v 125 (527)
T TIGR03075 47 LQPAWTFSLGKLRGQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMC-CDVVNRGVALYDGKVFF 125 (527)
T ss_pred ceEEEEEECCCCCCcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccc-cccccccceEECCEEEE
Confidence 456788888642 13345668999999999999999966532 575432 1111 0000 0011 234566789999
Q ss_pred EEC-CeEEEEcCCCCce---eEecC-CCCCcee-EEEEeCCeEEEEEeC-----CCeEEEEecCccceeeeeecchh
Q psy2153 78 GYK-NKIHVVDPKSLKS---FDAHP-RRESQVR-QMTWAGDGVWVSIRL-----DSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 78 g~g-nkI~VIn~~Tlks---f~~~~-~~~~~V~-~Ma~~G~GVWiS~~~-----ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
++. ++++.||++|.|. +.... .....++ .-+..+.-|++.... +..|+.||++|.|.|-.++..+.
T Consensus 126 ~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 126 GTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred EcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 875 6799999999842 22211 1111222 334455667776542 57899999999999999997653
No 63
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=93.40 E-value=1.2 Score=44.38 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=73.2
Q ss_pred CeEEEEecC-----CcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-----------CeEEEEcCC
Q psy2153 26 GRVVCALAD-----GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-----------NKIHVVDPK 89 (325)
Q Consensus 26 ~~VfVgLAN-----GtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-----------nkI~VIn~~ 89 (325)
.+|||.=.. |++.|++-... +--..|++|. .|---+..=+..||+++. +.|-|+|+.
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~-----~v~g~i~~G~--~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAG-----RVLGMTDGGF--LPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCC-----EEEEEEEccC--CCceeECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 345554443 89999984331 2235688887 443313333468999888 779999999
Q ss_pred CC---ceeEecCCCCCc----eeEEEEeCCe--EEEEEeC-CCeEEEEecCccceeeeeecc
Q psy2153 90 SL---KSFDAHPRRESQ----VRQMTWAGDG--VWVSIRL-DSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 90 Tl---ksf~~~~~~~~~----V~~Ma~~G~G--VWiS~~~-ss~IrL~ha~T~e~LqdIdIa 141 (325)
|+ +.+..-++++.+ -..++.+.+| +|++=-. +..|-+.|.++.+.+.+|++-
T Consensus 86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 99 445554443322 2356666555 5554433 889999999999999999984
No 64
>KOG3881|consensus
Probab=93.08 E-value=0.75 Score=46.42 Aligned_cols=130 Identities=13% Similarity=0.114 Sum_probs=91.7
Q ss_pred eCCCceeeeEEeCC---eEE-EEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC-CeEEE
Q psy2153 13 KILDTALPPVHVQG---RVV-CALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHV 85 (325)
Q Consensus 13 kL~dsVl~I~~~~~---~Vf-VgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g-nkI~V 85 (325)
++|==+++|.+.++ +.| .+.-.|.|-+|+-.+.. .+...+.+.. +||+++... ++.++.|.- .++..
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E--~~is~~~l~p~gn~Iy~gn~~g~l~~ 273 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE--NPISSTGLTPSGNFIYTGNTKGQLAK 273 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc--CcceeeeecCCCcEEEEecccchhhe
Confidence 34445677777655 445 45678899999855432 3335567766 899998776 467887755 55888
Q ss_pred EcCCCCceeEe-cCCCCCceeEEEEeCC-eEEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 86 VDPKSLKSFDA-HPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 86 In~~Tlksf~~-~~~~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
||..+.+..-. -..-...|+.+.+.+. -|-.|+..+-.||+||++|-++|..+=+.+..+++|
T Consensus 274 FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il 338 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFIL 338 (412)
T ss_pred ecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEE
Confidence 88888743222 1111255666666655 477788899999999999999999999998888887
No 65
>KOG0308|consensus
Probab=93.05 E-value=1.3 Score=47.32 Aligned_cols=124 Identities=19% Similarity=0.268 Sum_probs=84.3
Q ss_pred CCceeeeEE-e-CCeEEEE-ecCCcEEEEEcCCCCC---CCCCCCeEEEcC-CCCCceeeeeeeC-CEEEE--EECCeEE
Q psy2153 15 LDTALPPVH-V-QGRVVCA-LADGSVAIFRRGPDGQ---WDLSKYHTVTLG-LPHHSVRSLAAVY-NKVWC--GYKNKIH 84 (325)
Q Consensus 15 ~dsVl~I~~-~-~~~VfVg-LANGtLaVF~R~~~g~---WD~~~~~~I~LG-~~~~PV~cml~v~-~~LW~--g~gnkI~ 84 (325)
+|=|.||.| . ++.++|+ =-|+.|.+++-+++-. -..++-..=+++ .|..||.++..-. +.+.+ |+++-+.
T Consensus 117 ~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 117 KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLR 196 (735)
T ss_pred cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceE
Confidence 477999999 4 3344443 2366899998775411 112232333444 3567888865554 34554 4445599
Q ss_pred EEcCCCC-c--eeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 85 VVDPKSL-K--SFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 85 VIn~~Tl-k--sf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+.|++|. + .+..|. ..|+.+....+| =-+|-+.+++|||||-.-.++++.+-+-
T Consensus 197 ~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred Eeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 9999998 3 345677 679988888777 6679999999999999999999886543
No 66
>KOG0286|consensus
Probab=92.96 E-value=2 Score=42.21 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=78.8
Q ss_pred ceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC---CeEEEEcCCCC
Q psy2153 17 TALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g---nkI~VIn~~Tl 91 (325)
-|.|+-+. ..++.-|-.||+|.|++ .|-.+..+.|++-+ .=|.........=.+||| |+-.|.+.++-
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWD-----s~TtnK~haipl~s--~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWD-----SFTTNKVHAIPLPS--SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR 129 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEE-----cccccceeEEecCc--eeEEEEEECCCCCeEEecCcCceeEEEecccc
Confidence 56666653 55777888999999997 35556678888865 556665555554455665 45444443332
Q ss_pred ---------ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 92 ---------KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 92 ---------ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
+.+..|. .-++|-....++--+.-+.+.+.-|||.+|.+.++++.
T Consensus 130 d~~g~~~v~r~l~gHt---gylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~ 183 (343)
T KOG0286|consen 130 DAEGNVRVSRELAGHT---GYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFH 183 (343)
T ss_pred cccccceeeeeecCcc---ceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEec
Confidence 3455555 66776666667888888999999999999999998864
No 67
>KOG0315|consensus
Probab=92.90 E-value=2.1 Score=41.38 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=78.2
Q ss_pred ceeeCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEECC--eEE
Q psy2153 10 PLNKILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYKN--KIH 84 (325)
Q Consensus 10 ~~IkL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~gn--kI~ 84 (325)
+..+-+++|.+++-..| .+|+|-.||.|-|++-.++- -....++ .+..||+++.+.- ++.-+|--| +-|
T Consensus 119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~----c~~~liP--e~~~~i~sl~v~~dgsml~a~nnkG~cy 192 (311)
T KOG0315|consen 119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS----CTHELIP--EDDTSIQSLTVMPDGSMLAAANNKGNCY 192 (311)
T ss_pred hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc----cccccCC--CCCcceeeEEEcCCCcEEEEecCCccEE
Confidence 34566789999998755 59999999999988743321 1112222 2347899988774 444444444 388
Q ss_pred EEcCCCC---------ceeEecCCCCCcee-EEEEeCCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 85 VVDPKSL---------KSFDAHPRRESQVR-QMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 85 VIn~~Tl---------ksf~~~~~~~~~V~-~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
|.+.-+. +.|.+|. ..|. |+.+.+.---.+++.+.++++|.++++ ...|.-+
T Consensus 193 vW~l~~~~~~s~l~P~~k~~ah~---~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l 254 (311)
T KOG0315|consen 193 VWRLLNHQTASELEPVHKFQAHN---GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVL 254 (311)
T ss_pred EEEccCCCccccceEhhheeccc---ceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEe
Confidence 8875443 4577777 4454 444444444456777999999999999 4444433
No 68
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=92.89 E-value=2.1 Score=43.87 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=65.6
Q ss_pred eEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCceeeeeeeCCEEEEE-------------------ECCeEEEE
Q psy2153 27 RVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCG-------------------YKNKIHVV 86 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g-------------------~gnkI~VI 86 (325)
.||++..+|.|..+++..+. .|..+.. .-+....| +.|+++ ..++++.|
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--------~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--------GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--------ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 59999999999999986543 4753321 01111122 444443 34679999
Q ss_pred cCCCCc-ee--EecCC-------CCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 87 DPKSLK-SF--DAHPR-------RESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 87 n~~Tlk-sf--~~~~~-------~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
|.+|.+ .+ +.... ....-.-++..+.-|++. ..+..|+.+|++|.|.+.+.++..
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g-~~dG~l~ald~~tG~~lW~~~~~~ 436 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAG-AADGYFRAFDATTGKELWKFRTPS 436 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEE-CCCCeEEEEECCCCceeeEEECCC
Confidence 999983 22 22210 111123466777666654 478899999999999999988743
No 69
>KOG2048|consensus
Probab=92.85 E-value=2 Score=45.92 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=97.0
Q ss_pred CCCCCccceeeCCC-ceeeeEEe--CCeEEEEecCCcEEEEEcCCCCC-CCCCCCeEEEcCCCCCceeeeeeeCCEEEEE
Q psy2153 3 YPHPTPYPLNKILD-TALPPVHV--QGRVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGLPHHSVRSLAAVYNKVWCG 78 (325)
Q Consensus 3 ~~~~~~L~~IkL~d-sVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~-WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g 78 (325)
+.+.+++++.+.-+ -|+||.-. +++||.|-+||++.-|.+...+. |-...++.. +.+-||+|++.++.+..|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~----h~hdvrs~av~~~~l~sg 307 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDL----HAHDVRSMAVIENALISG 307 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccC----CcccceeeeeecceEEec
Confidence 45667777777665 69999986 46999999999999999876554 644443332 236699999999999988
Q ss_pred ECCeEEEEcCCCC--------c--------------------e------------------------eEecCCCCCceeE
Q psy2153 79 YKNKIHVVDPKSL--------K--------------------S------------------------FDAHPRRESQVRQ 106 (325)
Q Consensus 79 ~gnkI~VIn~~Tl--------k--------------------s------------------------f~~~~~~~~~V~~ 106 (325)
-.+...++.+..- + . +.....+...|+|
T Consensus 308 G~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~ 387 (691)
T KOG2048|consen 308 GRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISC 387 (691)
T ss_pred ceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceee
Confidence 8888777654321 0 0 0011123467888
Q ss_pred EEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 107 MTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 107 Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
-+.+..|-||+++.-+..++|+-.---.+..+++..
T Consensus 388 ~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~ 423 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDD 423 (691)
T ss_pred eccCCCCCEEEEeeccceEEEEeccCcceeEEEecc
Confidence 888899999999999999999877755555555554
No 70
>KOG0278|consensus
Probab=92.83 E-value=1.4 Score=42.57 Aligned_cols=122 Identities=15% Similarity=0.143 Sum_probs=79.7
Q ss_pred CccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CCEEEEEECCe--E
Q psy2153 7 TPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYKNK--I 83 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~~LW~g~gnk--I 83 (325)
+-.+++.++.+|.++.+....=++..|+|.=+.| ||..+-..|+-=.-..-|.+-... +..++++-|+. +
T Consensus 176 t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~F-------wdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKF-------WDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred cEEEEEecCCCCcceeeccCCCEEEEecCceeEE-------eccccccceeeccCccccccccccCCCceEEecCcceEE
Confidence 4568899999999999987777788888876666 555444333321101224333222 23444444433 8
Q ss_pred EEEcCCCCceeEec-CCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCcccee
Q psy2153 84 HVVDPKSLKSFDAH-PRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHL 135 (325)
Q Consensus 84 ~VIn~~Tlksf~~~-~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~L 135 (325)
|.+|-.|....+.+ ......|-|+--+.+| ++-|-+.+.+||||.+.-.++-
T Consensus 249 ~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 88888887433332 3334788888888777 8888899999999998765543
No 71
>KOG0295|consensus
Probab=92.58 E-value=0.41 Score=47.95 Aligned_cols=126 Identities=20% Similarity=0.309 Sum_probs=91.0
Q ss_pred CCCceeeeEEeCCeEEEEec--CCcEEEEEcCCC----------------------------------CCCCCCCC-eEE
Q psy2153 14 ILDTALPPVHVQGRVVCALA--DGSVAIFRRGPD----------------------------------GQWDLSKY-HTV 56 (325)
Q Consensus 14 L~dsVl~I~~~~~~VfVgLA--NGtLaVF~R~~~----------------------------------g~WD~~~~-~~I 56 (325)
-..+|+.+.++++.-.+.+| +++|-+|++..+ ..||++.. .++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 34589999999999888888 999999987541 14665552 222
Q ss_pred --EcCCCCCceee--eeeeCCEEEEEEC-CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEE
Q psy2153 57 --TLGLPHHSVRS--LAAVYNKVWCGYK-NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMY 127 (325)
Q Consensus 57 --~LG~~~~PV~c--ml~v~~~LW~g~g-nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ 127 (325)
.+|. .+-|.| .++.+|.+--+++ +.|+..+-.|. ++|..|++ =|+-+...++| +.-|++++-+||+|
T Consensus 187 ks~~gh-~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e---wvr~v~v~~DGti~As~s~dqtl~vW 262 (406)
T KOG0295|consen 187 KSLIGH-EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE---WVRMVRVNQDGTIIASCSNDQTLRVW 262 (406)
T ss_pred HHhcCc-ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH---hEEEEEecCCeeEEEecCCCceEEEE
Confidence 2232 234444 4455677654444 55999999998 88988884 67777777777 67788999999999
Q ss_pred ecCccceeeeeecchh
Q psy2153 128 NAHTYQHLQDVDIEPY 143 (325)
Q Consensus 128 ha~T~e~LqdIdIa~~ 143 (325)
=..|.++++++-.-..
T Consensus 263 ~~~t~~~k~~lR~hEh 278 (406)
T KOG0295|consen 263 VVATKQCKAELREHEH 278 (406)
T ss_pred Eeccchhhhhhhcccc
Confidence 9999998888765443
No 72
>KOG0281|consensus
Probab=92.53 E-value=0.38 Score=48.20 Aligned_cols=120 Identities=16% Similarity=0.211 Sum_probs=86.3
Q ss_pred CceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCe-EEEEcCCCC---
Q psy2153 16 DTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNK-IHVVDPKSL--- 91 (325)
Q Consensus 16 dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnk-I~VIn~~Tl--- 91 (325)
+.|.|+-|.++++.-||.|.++-|++|+.-.. ..+--|. ..+|-||..-+.-+--|+.++ |.|.|-+|.
T Consensus 198 kgVYClQYDD~kiVSGlrDnTikiWD~n~~~c------~~~L~GH-tGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 198 KGVYCLQYDDEKIVSGLRDNTIKIWDKNSLEC------LKILTGH-TGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CceEEEEecchhhhcccccCceEEeccccHHH------HHhhhcC-CCcEEeeeccceEEEecCCCceEEEEeccCCchh
Confidence 58999999999999999999999988764211 1122354 367889766665556677766 899888887
Q ss_pred ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccc----------eeeeeecchhhhh
Q psy2153 92 KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQ----------HLQDVDIEPYVSK 146 (325)
Q Consensus 92 ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e----------~LqdIdIa~~v~~ 146 (325)
+.+--|. ..|-++..+ .|.-++++.+-++++||-.+-. |+..+|+-.+-.|
T Consensus 271 ~tlihHc---eaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k 331 (499)
T KOG0281|consen 271 NTLIHHC---EAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 331 (499)
T ss_pred hHHhhhc---ceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc
Confidence 5555555 457777766 6889999999999999976543 4555555554444
No 73
>KOG2695|consensus
Probab=92.42 E-value=0.77 Score=46.01 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCCceeeeEEe--CCeEEEEecCCcEEEEE---cCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEEC--CeEE
Q psy2153 14 ILDTALPPVHV--QGRVVCALADGSVAIFR---RGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK--NKIH 84 (325)
Q Consensus 14 L~dsVl~I~~~--~~~VfVgLANGtLaVF~---R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~g--nkI~ 84 (325)
-++-|+++.|. ++=||.|+-||.|++++ |+.+..|-. +.+-.+ +.|+||..+. ++--.++. .+|.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a---~rlyh~---Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA---QRLYHD---SSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce---EEEEcC---cchhhhhhhccccceEeeccCcCcee
Confidence 34556666653 68899999999999998 344445643 445555 4799987765 44444444 6788
Q ss_pred EEcCCCC------ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 85 VVDPKSL------KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 85 VIn~~Tl------ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
..|-.-. .++|-|-+....+-..+....|+-+|.-.|...|.|-.+...+|.+|-...
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 8886665 468888887777776666778999999999999999999999998886654
No 74
>KOG0294|consensus
Probab=92.04 E-value=1 Score=44.53 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=62.6
Q ss_pred eeeeeeeC-CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCC---eEEEEEeCCCeEEEEecCcc----
Q psy2153 65 VRSLAAVY-NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGD---GVWVSIRLDSTLRMYNAHTY---- 132 (325)
Q Consensus 65 V~cml~v~-~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~---GVWiS~~~ss~IrL~ha~T~---- 132 (325)
+-|....+ +.|-.|-.|. |.+.|+.+. ..|.+|+ ..|..|+.... .+-++.+.++.|++||...-
T Consensus 211 ~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~---~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~ 287 (362)
T KOG0294|consen 211 ILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHE---NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKR 287 (362)
T ss_pred ceeeeecCCceEEEecCCceEEEeccCCCccceeeecch---hheeeeEEEecCCceEEEEeccCceEEEEEccccccCC
Confidence 55666664 6777777776 888898876 6788998 66888876533 68889999999999999998
Q ss_pred -ceeeeeecchhhhhh
Q psy2153 133 -QHLQDVDIEPYVSKM 147 (325)
Q Consensus 133 -e~LqdIdIa~~v~~~ 147 (325)
+.|.++|+..+.+-|
T Consensus 288 ~~~l~e~n~~~RltCl 303 (362)
T KOG0294|consen 288 PTLLAELNTNVRLTCL 303 (362)
T ss_pred cceeEEeecCCcccee
Confidence 899999997655444
No 75
>KOG0318|consensus
Probab=92.02 E-value=2.4 Score=44.51 Aligned_cols=112 Identities=14% Similarity=0.162 Sum_probs=80.6
Q ss_pred ceeeCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC---CeEE
Q psy2153 10 PLNKILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK---NKIH 84 (325)
Q Consensus 10 ~~IkL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g---nkI~ 84 (325)
..++.+.+|++|.|..+ ++-++=+++++++|++..... +.-.-+.-...|.||.--.+..-.|.| +.|+
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~------~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV------KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce------ecceeeeeeeeEEEEEeCCCceEEEeccccceEE
Confidence 45667789999999755 566677899999999876432 121222223668888877766666666 5688
Q ss_pred EEcCCCC-cee---EecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecC
Q psy2153 85 VVDPKSL-KSF---DAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 85 VIn~~Tl-ksf---~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~ 130 (325)
|.+.+.= +.. .+|. ..|+.+++....=-+|--.++.|++||..
T Consensus 556 iysv~kP~~~i~iknAH~---~gVn~v~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 556 IYSVKKPAKHIIIKNAHL---GGVNSVAWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEEccChhhheEeccccc---cCceeEEEecCceEEeccCcceeEEeccc
Confidence 8886543 334 4555 44999999988888899999999999864
No 76
>KOG2106|consensus
Probab=91.94 E-value=3.9 Score=42.88 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=85.2
Q ss_pred CCCccceeeCCCceeeeEEe-CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEECC
Q psy2153 5 HPTPYPLNKILDTALPPVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKN 81 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~~-~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~gn 81 (325)
+-|+.|+.+.-|++.|.-+. .+.|-+|.+.|...|++- +....|++-..++|+++|-.. ++.+=+|+.|
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~--------e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d 468 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDT--------ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHD 468 (626)
T ss_pred CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEec--------ccceeEEEEecCCceEEEEEcCCCCEEEEecCC
Confidence 45889999999999999864 568889999999999973 223456665556899998655 5788889986
Q ss_pred e-EEEEcCCCC----ceeEecCCCCCceeEEEEeCCeEE-EEEeCCCeEEEEecCccce
Q psy2153 82 K-IHVVDPKSL----KSFDAHPRRESQVRQMTWAGDGVW-VSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 82 k-I~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~G~GVW-iS~~~ss~IrL~ha~T~e~ 134 (325)
. ||+.-...- +....++ .+.|+++-++-++-+ ++-+.+--|--|.+...+.
T Consensus 469 ~~iyiy~Vs~~g~~y~r~~k~~--gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~ 525 (626)
T KOG2106|consen 469 NHIYIYRVSANGRKYSRVGKCS--GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQ 525 (626)
T ss_pred CeEEEEEECCCCcEEEEeeeec--CceeEEeeecCCCceEEeccCceEEEEEccccCcc
Confidence 5 666544333 2233333 389999999866644 4555677788886666554
No 77
>KOG0263|consensus
Probab=91.72 E-value=1.1 Score=48.29 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=78.5
Q ss_pred ceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc--CCCCCceeeeeeeCCEEEEEECCe---EEEEcCCCC
Q psy2153 17 TALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHSVRSLAAVYNKVWCGYKNK---IHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L--G~~~~PV~cml~v~~~LW~g~gnk---I~VIn~~Tl 91 (325)
-|.|..++.|.-|++...-+= .-..||..+-..+.+ |. ..||.+|..-.+-.|.|+|.. |.+.|..+-
T Consensus 537 DV~cv~FHPNs~Y~aTGSsD~------tVRlWDv~~G~~VRiF~GH-~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~ 609 (707)
T KOG0263|consen 537 DVDCVSFHPNSNYVATGSSDR------TVRLWDVSTGNSVRIFTGH-KGPVTALAFSPCGRYLASGDEDGLIKIWDLANG 609 (707)
T ss_pred ccceEEECCcccccccCCCCc------eEEEEEcCCCcEEEEecCC-CCceEEEEEcCCCceEeecccCCcEEEEEcCCC
Confidence 477888888877776553221 112577666655555 64 589999999999999999855 888887774
Q ss_pred ---ceeEecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecCcccee
Q psy2153 92 ---KSFDAHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAHTYQHL 135 (325)
Q Consensus 92 ---ksf~~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~T~e~L 135 (325)
++|--|. ..|..|.-+- .+|-++-..+.+|||||......+
T Consensus 610 ~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 610 SLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred cchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 6777774 5666666553 458889999999999988766554
No 78
>KOG0277|consensus
Probab=91.62 E-value=1.7 Score=42.02 Aligned_cols=109 Identities=18% Similarity=0.277 Sum_probs=67.7
Q ss_pred ccceeeCCCceeeeEE---eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEE--------
Q psy2153 8 PYPLNKILDTALPPVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVW-------- 76 (325)
Q Consensus 8 ~L~~IkL~dsVl~I~~---~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW-------- 76 (325)
.+++..-.|.+..+.. .++.|+++-.||+|-+|+- +.|..||.+.-..+.+|+
T Consensus 53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~----------------~~~s~Pi~~~kEH~~EV~Svdwn~~~ 116 (311)
T KOG0277|consen 53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL----------------TMPSKPIHKFKEHKREVYSVDWNTVR 116 (311)
T ss_pred EEEeeecccceeEeeecCCCcceEEEEecCceEEEecc----------------CCCCcchhHHHhhhhheEEecccccc
Confidence 3455566778888876 4778999999999999972 223345555444432222
Q ss_pred -----EEECCe-EEEEcCCCCceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCcc
Q psy2153 77 -----CGYKNK-IHVVDPKSLKSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 77 -----~g~gnk-I~VIn~~Tlksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~ 132 (325)
.++.+. |++.++.--++.......++.|..-+.+ -.+++.|.+.++++|+||...-
T Consensus 117 r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 117 RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence 233322 4444443333333333334777776665 4579999999999999996544
No 79
>KOG0643|consensus
Probab=91.56 E-value=3.6 Score=40.20 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=94.0
Q ss_pred CCccceeeCCCceeeeEEe-CCeEEEEecC------CcEEEEEcC-CCCCCCCCCCeEEEcCCCCCceeeee--eeCCEE
Q psy2153 6 PTPYPLNKILDTALPPVHV-QGRVVCALAD------GSVAIFRRG-PDGQWDLSKYHTVTLGLPHHSVRSLA--AVYNKV 75 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~-~~~VfVgLAN------GtLaVF~R~-~~g~WD~~~~~~I~LG~~~~PV~cml--~v~~~L 75 (325)
=|.|-.++.+.+|-..-+. ++.+++...+ +.|-+|+-. .+..-+-+.| .+.+-.|.+.++.++ ..++.+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep-~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEP-YLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCc-eEEecCCccceeeeeecccCCEE
Confidence 3567778888888877763 4444444443 368899843 3323333332 444444445565543 234565
Q ss_pred EEEEC-CeEEEEcCCCCcee-EecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchhhhhh
Q psy2153 76 WCGYK-NKIHVVDPKSLKSF-DAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 76 W~g~g-nkI~VIn~~Tlksf-~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
..|-. .+|-..|+++.+.+ +.....++.|+.|.-+.+. -+|.-+.+.+-+|||..|++++...-.+.+|+..
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 55444 56999999997433 2223344799999888555 8889999999999999999999999998877654
No 80
>KOG1274|consensus
Probab=91.46 E-value=2.7 Score=46.48 Aligned_cols=124 Identities=14% Similarity=0.119 Sum_probs=82.8
Q ss_pred CccceeeCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCC---CCCCCCCeEEEcCCCCCceeeeeee---CCEEE-E
Q psy2153 7 TPYPLNKILDTALPPVHVQG--RVVCALADGSVAIFRRGPDG---QWDLSKYHTVTLGLPHHSVRSLAAV---YNKVW-C 77 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g---~WD~~~~~~I~LG~~~~PV~cml~v---~~~LW-~ 77 (325)
+..+....+++|++|.|..+ .|-|+.-||+|.||+-...- .|+--. +.. +.-.+.+.+-+.- ++++- .
T Consensus 130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~-k~n--~~~~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVD-KDN--EFILSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCC-ccc--cccccceeeeeeecCCCCeEEee
Confidence 34456677889999999754 56667779999999865321 232111 111 1111233333333 24443 3
Q ss_pred EECCeEEEEcCCCC-ceeEecCCCCCc-eeEEEEeCCeEEEEEeC-CCeEEEEecCccc
Q psy2153 78 GYKNKIHVVDPKSL-KSFDAHPRRESQ-VRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQ 133 (325)
Q Consensus 78 g~gnkI~VIn~~Tl-ksf~~~~~~~~~-V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e 133 (325)
+..|.|.+++.++- ++|....+..++ ++.+.++..|-++|-.. +..|-+||.+|.+
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~ 265 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE 265 (933)
T ss_pred ccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch
Confidence 55578999999998 888887765444 88999998898888765 8999999999843
No 81
>KOG4499|consensus
Probab=91.44 E-value=1.5 Score=42.17 Aligned_cols=85 Identities=15% Similarity=0.246 Sum_probs=54.5
Q ss_pred EEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceeeccccc---cccccCccccCCCccc
Q psy2153 106 QMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAE---TIISPFGWYANNPADI 181 (325)
Q Consensus 106 ~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~ 181 (325)
-|+.++.| +|+++-++++|.-+|..|.+.|+||-+-. .+.. +|- .+|- ..---.-=+.++|..+
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt--~qit------scc----FgGkn~d~~yvT~aa~~~dp~~~ 283 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPT--PQIT------SCC----FGGKNLDILYVTTAAKFDDPVRT 283 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCC--CceE------EEE----ecCCCccEEEEEehhcccCchhc
Confidence 47777666 99999999999999999999999999863 2333 221 1111 0000000133444444
Q ss_pred cccccccccceeeeeccCCCCCCCcc
Q psy2153 182 LESFTVCQSHLLCIASVPGTGKLGFS 207 (325)
Q Consensus 182 ~~~f~~~~~~~~ci~~vp~~~~~~~~ 207 (325)
.+ +.+..||.+|+|....|+.
T Consensus 284 ~~-----~p~aG~iykitgl~~~g~p 304 (310)
T KOG4499|consen 284 NT-----DPNAGTIYKITGLNAKGYP 304 (310)
T ss_pred cc-----CCCCccEEEecCcccCCCC
Confidence 43 4567899999987766643
No 82
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=91.29 E-value=5.3 Score=37.83 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=75.3
Q ss_pred CccceeeCCCceeeeEEe--CCeEEEE-ecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEE--
Q psy2153 7 TPYPLNKILDTALPPVHV--QGRVVCA-LADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGY-- 79 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~--~~~VfVg-LANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~-- 79 (325)
+.+..++....+..|... .+++||+ -.++.|.+|+.+.+|.+. ....+.++. .|- .+..- +..|++++
T Consensus 26 ~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~--~~~~~~~~~--~p~-~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 26 TLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT--FAAESPLPG--SPT-HISTDHQGRFLFSASYN 100 (330)
T ss_pred eeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE--EeeeecCCC--Cce-EEEECCCCCEEEEEEcC
Confidence 456666666777777665 4468886 457889999876555442 112344443 342 33333 35689887
Q ss_pred CCeEEEEcCCCC----ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceee
Q psy2153 80 KNKIHVVDPKSL----KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 80 gnkI~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
.++|.+++.++- +.....+ .......++.+ |..+|++-..+..|++||..+...|+
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV 162 (330)
T ss_pred CCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc
Confidence 588999987642 1111111 11223334444 56688888899999999998855443
No 83
>PTZ00421 coronin; Provisional
Probab=91.28 E-value=5.2 Score=41.53 Aligned_cols=119 Identities=10% Similarity=0.058 Sum_probs=65.2
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC------CeEEEE
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK------NKIHVV 86 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g------nkI~VI 86 (325)
.+.|.+|.+. .+.++.|-.||+|-||+-.... ....+.-.......+++..-++...+++| +.|.+.
T Consensus 168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~-----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT-----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred CCceEEEEEECCCCEEEEecCCCEEEEEECCCCc-----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 4689999876 3356677789999998843321 11112211100112333222322333322 469999
Q ss_pred cCCCC-ceeEecC-CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeee
Q psy2153 87 DPKSL-KSFDAHP-RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 87 n~~Tl-ksf~~~~-~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
|..++ +.+.... +....+.....+ +.-++++-+.+..||+||..+.+.+...
T Consensus 243 Dlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 243 DTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred eCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 99887 3333221 222233333333 3446666677999999999988765543
No 84
>KOG0647|consensus
Probab=91.16 E-value=2.1 Score=42.27 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=86.7
Q ss_pred CceeeeEEeC---CeEEEEecCCcEEEEEcCCCCCCCCCCCeE-EEcCCCCCceeeeeeeC--CEEEEEECC-eEEEEcC
Q psy2153 16 DTALPPVHVQ---GRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDP 88 (325)
Q Consensus 16 dsVl~I~~~~---~~VfVgLANGtLaVF~R~~~g~WD~~~~~~-I~LG~~~~PV~cml~v~--~~LW~g~gn-kI~VIn~ 88 (325)
|+|.+|.+.. +-+.+|-=||+|-+|+-+.+|+ -.++. ..+. .||-|..-.+ .+++.|+-+ ++.+.|.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---~~~ka~~~~~---~PvL~v~WsddgskVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---LVPKAQQSHD---GPVLDVCWSDDGSKVFSGGCDKQAKLWDL 101 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCc---ccchhhhccC---CCeEEEEEccCCceEEeeccCCceEEEEc
Confidence 7999999974 4455778899999999777664 22233 2333 6887777765 588876664 5999999
Q ss_pred CCC--ceeEecCCCCCceeEEEEeCCe---EEEEEeCCCeEEEEecCccceeeeeecchhh
Q psy2153 89 KSL--KSFDAHPRRESQVRQMTWAGDG---VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 89 ~Tl--ksf~~~~~~~~~V~~Ma~~G~G---VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v 144 (325)
.+. .++.+|. ..|+.+.+.+.. .-++-+=+-+|+.||+..-..+..+++-.+|
T Consensus 102 ~S~Q~~~v~~Hd---~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRv 159 (347)
T KOG0647|consen 102 ASGQVSQVAAHD---APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERV 159 (347)
T ss_pred cCCCeeeeeecc---cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecccee
Confidence 888 5778887 556666665433 3345556889999999999999998876554
No 85
>KOG2444|consensus
Probab=91.13 E-value=0.71 Score=43.71 Aligned_cols=113 Identities=17% Similarity=0.241 Sum_probs=74.9
Q ss_pred eEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCC--eEEEcCCCCCceeeeeeeCC---EEEEEECC-eEEEEcCCCCcee
Q psy2153 21 PVHVQGRVVCALADGSVAIFRRGPDGQWDLSKY--HTVTLGLPHHSVRSLAAVYN---KVWCGYKN-KIHVVDPKSLKSF 94 (325)
Q Consensus 21 I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~--~~I~LG~~~~PV~cml~v~~---~LW~g~gn-kI~VIn~~Tlksf 94 (325)
++-....|++|..+|.|.+|. |++... ..+..|. .+|-||.+..+ ..|+++++ +|.-.|.+-.|..
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n------~n~~g~~~d~~~s~~--e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFN------WNLEGAHSDRVCSGE--ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred ecccCceEEeecccceEEEec------CCccchHHHhhhccc--ccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 334577899999999999997 444443 2355565 89999999863 68999995 4999998887544
Q ss_pred Eec-CCCCCceeEEEEeCCeEEEEE---eCCCeEEEEecCccceeeeeecc
Q psy2153 95 DAH-PRRESQVRQMTWAGDGVWVSI---RLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 95 ~~~-~~~~~~V~~Ma~~G~GVWiS~---~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
..- +-....+...++.+.+=.+.+ +.+..++.|+-+..+---.++-.
T Consensus 138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~d~~~i~~~ 188 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIKDESPISSV 188 (238)
T ss_pred eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhhccCcchhh
Confidence 321 111144554555555544444 46788999998876654444433
No 86
>KOG0318|consensus
Probab=91.08 E-value=6 Score=41.63 Aligned_cols=114 Identities=16% Similarity=0.303 Sum_probs=79.9
Q ss_pred eEEEEecCCcEEEEEcCCCCCCCCCCCeE-EEcCCCCCceeeeeee-CCEEEE--EECCeEEEEcCCCC---ceeEecCC
Q psy2153 27 RVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV-YNKVWC--GYKNKIHVVDPKSL---KSFDAHPR 99 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g~WD~~~~~~-I~LG~~~~PV~cml~v-~~~LW~--g~gnkI~VIn~~Tl---ksf~~~~~ 99 (325)
|+--+=-|+++++|+ | .+.+. .+.+.-..=|+|.-.- +++..+ |+-.+|++.|-+|. ..|+-...
T Consensus 162 Ri~T~sdDn~v~ffe----G----PPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~a 233 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFE----G----PPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDA 233 (603)
T ss_pred EEEeccCCCeEEEee----C----CCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCC
Confidence 344455577888887 3 11121 3444422346665444 356665 44477999999998 34552223
Q ss_pred CCCceeEEEEeCC-eEEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 100 RESQVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 100 ~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
....|..+.|+.+ --..+.+.+-++++||..|.++.+++.....|-.|+
T Consensus 234 HkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqq 283 (603)
T KOG0318|consen 234 HKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQ 283 (603)
T ss_pred ccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceE
Confidence 3488999999944 477789999999999999999999999999888888
No 87
>KOG0271|consensus
Probab=90.96 E-value=1 Score=45.61 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=73.4
Q ss_pred CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC---CeEEEEcCCCCceeEecCCCCC
Q psy2153 26 GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSLKSFDAHPRRES 102 (325)
Q Consensus 26 ~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g---nkI~VIn~~Tlksf~~~~~~~~ 102 (325)
.++.-|--|++|.+++..... .|..---|. +.=|.....-.|..|+|++ ++|...+..|.|.+......-.
T Consensus 337 erlVSgsDd~tlflW~p~~~k-----kpi~rmtgH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~ 410 (480)
T KOG0271|consen 337 ERLVSGSDDFTLFLWNPFKSK-----KPITRMTGH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA 410 (480)
T ss_pred ceeEEecCCceEEEecccccc-----cchhhhhch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc
Confidence 457777777788887643321 111111232 2334444455688888887 4599999999854433333347
Q ss_pred ceeEEEEeCC-eEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 103 QVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 103 ~V~~Ma~~G~-GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
.|.+++++.+ -+-+|.+.+++|++|+..|.+.-||+-
T Consensus 411 ~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLp 448 (480)
T KOG0271|consen 411 AVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLP 448 (480)
T ss_pred eeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCC
Confidence 7999999844 589999999999999999999988764
No 88
>KOG2048|consensus
Probab=90.86 E-value=26 Score=37.84 Aligned_cols=191 Identities=13% Similarity=0.170 Sum_probs=114.8
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CCEEEEEEC-CeEEEEcCCC
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYK-NKIHVVDPKS 90 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~~LW~g~g-nkI~VIn~~T 90 (325)
|++|.|+.|. .++|-||=++|.|=+|.-.+ .|=.+ .+|..+ +...|-.++-. +++|.-... .+|.=+|..+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~--~w~~~--~vi~g~-~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN--NWFLE--PVIHGP-EDRSIESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCC--Cceee--EEEecC-CCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence 6899999985 67899999999999997444 36433 345554 46889998888 578886555 5588889999
Q ss_pred CceeEecCCCCCceeEEEEeCCeEEEEEe-CCCeEEEEecCccceeeeeecchhhhhhccc-cc------ccccceeecc
Q psy2153 91 LKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDVDIEPYVSKMLGM-YT------FCSCVTIRTL 162 (325)
Q Consensus 91 lksf~~~~~~~~~V~~Ma~~G~GVWiS~~-~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~-~~------~~~~~~~~~~ 162 (325)
+++.-.+.-.+..|=.|+....+==+++. .++.+..++..+.+.-.+..+----.+.|.. ++ ..||.+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D---- 175 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID---- 175 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC----
Confidence 97766666566777777766444222333 4447777777777666665554433444432 10 122211
Q ss_pred ccccccccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCeeeEeCCCCcc
Q psy2153 163 LAETIISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSRLWIGTASGKA 230 (325)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~LWiGTs~G~~ 230 (325)
-.|+ .||+..+.+. .+=-..+-|..+.. +.+--+-+....+.+-=|-|+|.+
T Consensus 176 ---g~Ir--iwd~~~~~t~----------~~~~~~~d~l~k~~-~~iVWSv~~Lrd~tI~sgDS~G~V 227 (691)
T KOG2048|consen 176 ---GVIR--IWDVKSGQTL----------HIITMQLDRLSKRE-PTIVWSVLFLRDSTIASGDSAGTV 227 (691)
T ss_pred ---ceEE--EEEcCCCceE----------EEeeecccccccCC-ceEEEEEEEeecCcEEEecCCceE
Confidence 0000 1444444332 21122233444422 344445555577788889999964
No 89
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=90.55 E-value=0.37 Score=50.90 Aligned_cols=58 Identities=12% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCEEEEEECCeEEEEcCCCCceeEecCCCC-CceeEEEEe-CCeEEEEEeCCCeEEEEecCc
Q psy2153 72 YNKVWCGYKNKIHVVDPKSLKSFDAHPRRE-SQVRQMTWA-GDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 72 ~~~LW~g~gnkI~VIn~~Tlksf~~~~~~~-~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T 131 (325)
++.+|+|..+-.+.+|+.+.|-++.-+.+. ..|.+|+.+ +.+.||....+ +.++++++
T Consensus 175 ~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG--v~~~e~~G 234 (671)
T COG3292 175 NGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG--VYLQEAEG 234 (671)
T ss_pred cCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc--eEEEchhh
Confidence 589999999999999999987665544333 667777665 56688776554 33444444
No 90
>KOG0285|consensus
Probab=90.48 E-value=1.2 Score=44.84 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=88.4
Q ss_pred ccceeeCCCceeeeEEeCC---eEEEEecCCcEEEEEcC-CCCCCCCCCCeEEEcCC-CCCceeeeeeeCC-EEEE-EEC
Q psy2153 8 PYPLNKILDTALPPVHVQG---RVVCALADGSVAIFRRG-PDGQWDLSKYHTVTLGL-PHHSVRSLAAVYN-KVWC-GYK 80 (325)
Q Consensus 8 ~L~~IkL~dsVl~I~~~~~---~VfVgLANGtLaVF~R~-~~g~WD~~~~~~I~LG~-~~~PV~cml~v~~-~LW~-g~g 80 (325)
-+|-|+-+++|..+.-+++ +|.+--.|++|+-=.-+ .-..||+..-+++..+. ....||||....+ .+++ ||.
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 4688888999988885544 34444456665544422 12368888777755544 3467899888753 3444 444
Q ss_pred CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeee
Q psy2153 81 NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 81 nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
|.|.-.+--.. +.++-|. ..|+.|+...+||.++-....++..||.++.-.-|.+
T Consensus 340 dnik~w~~p~g~f~~nlsgh~---~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 340 DNIKQWKLPEGEFLQNLSGHN---AIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ccceeccCCccchhhcccccc---ceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc
Confidence 66766553222 4555554 7899999999999999999999999999998776655
No 91
>KOG0295|consensus
Probab=90.43 E-value=5.4 Score=40.25 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=94.8
Q ss_pred CCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEECCe--EEEEcCCCC--c-eeEecCCCCCceeEEEEe-------
Q psy2153 45 DGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKNK--IHVVDPKSL--K-SFDAHPRRESQVRQMTWA------- 110 (325)
Q Consensus 45 ~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~gnk--I~VIn~~Tl--k-sf~~~~~~~~~V~~Ma~~------- 110 (325)
-..|+++.-.++..=.+..---.|..+ ++++-++|+|. +.|.-..|+ | .|..|+ ..|.|+++.
T Consensus 217 ik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~ 293 (406)
T KOG0295|consen 217 IKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPS 293 (406)
T ss_pred eeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccc---cceEEEEecccccCcc
Confidence 346888877665542222224455555 47999999975 666666665 2 222222 334444331
Q ss_pred ---------CCeEEEEEeCCCeEEEEecCccceeeeeec-chhhhhhcccccccccceeeccccccccccCc--cccCCC
Q psy2153 111 ---------GDGVWVSIRLDSTLRMYNAHTYQHLQDVDI-EPYVSKMLGMYTFCSCVTIRTLLAETIISPFG--WYANNP 178 (325)
Q Consensus 111 ---------G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI-a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~p 178 (325)
|.-+-.+.+.|.+||.||..|..+|.++-= ..-| .+.+++|.| +-+-.+
T Consensus 294 i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwV-------------------r~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 294 ISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWV-------------------RGVAFSPGGKYILSCAD 354 (406)
T ss_pred hhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEeccccee-------------------eeeEEcCCCeEEEEEec
Confidence 123778999999999999999999887642 1212 233456655 333345
Q ss_pred ccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCeeeEeCC
Q psy2153 179 ADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSRLWIGTA 226 (325)
Q Consensus 179 ~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~LWiGTs 226 (325)
.+.++.|++ ..-.|+...| .|+ .-+|+|=.-++.++|=|+
T Consensus 355 Dktlrvwdl--~~~~cmk~~~-ah~-----hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 355 DKTLRVWDL--KNLQCMKTLE-AHE-----HFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred CCcEEEEEe--ccceeeeccC-CCc-----ceeEEEecCCCCceEEec
Confidence 567788876 3457888887 453 557888888888877665
No 92
>KOG0279|consensus
Probab=90.23 E-value=3.6 Score=40.22 Aligned_cols=117 Identities=9% Similarity=0.227 Sum_probs=80.4
Q ss_pred CCceeeeEEeCCe---EEEEec-CCcEEEEEcCCCCCCCCCCCeE--EEcCCCCCceeeeeeeCCEEEEEEC---CeEEE
Q psy2153 15 LDTALPPVHVQGR---VVCALA-DGSVAIFRRGPDGQWDLSKYHT--VTLGLPHHSVRSLAAVYNKVWCGYK---NKIHV 85 (325)
Q Consensus 15 ~dsVl~I~~~~~~---VfVgLA-NGtLaVF~R~~~g~WD~~~~~~--I~LG~~~~PV~cml~v~~~LW~g~g---nkI~V 85 (325)
.+=|.|+.+..+. .+|..+ |++| ..||+++.+. --+|. +.-|+.|.+-.|-=-|++| ++++.
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~Dktv--------KvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASWDKTV--------KVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCASGGKDGEAML 218 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccCCceE--------EEEccCCcchhhccccc-cccEEEEEECCCCCEEecCCCCceEEE
Confidence 4568888887663 333322 2232 2477777644 34565 4667777666543335555 44888
Q ss_pred EcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 86 VDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 86 In~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.|...-|.+..-. ....|+.|+-+..-.|+..-..+.|++||.++.+.+.|.+++
T Consensus 219 wdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 219 WDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLD 273 (315)
T ss_pred EEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccc
Confidence 8877664332221 236788999999999999999999999999999999998876
No 93
>KOG0275|consensus
Probab=90.18 E-value=0.48 Score=47.19 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=78.5
Q ss_pred eCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCC-CCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEECCeEE-EE
Q psy2153 13 KILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQ-WDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGYKNKIH-VV 86 (325)
Q Consensus 13 kL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~-WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~gnkI~-VI 86 (325)
-+.|+|+||.+..+ .+--|-.||++-|++-..+.. --++. -. ..-|+|+-...| ++--++-++.. +=
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-----AH--tkGvt~l~FSrD~SqiLS~sfD~tvRiH 333 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-----AH--TKGVTCLSFSRDNSQILSASFDQTVRIH 333 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-----hh--ccCeeEEEEccCcchhhcccccceEEEe
Confidence 46789999999755 355577899999997544321 01111 01 145778777653 55556656533 32
Q ss_pred cCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 87 DPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 87 n~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
-.++. |.|.-|+ +-|+......+| --||.+.+.+|++||.+|-|+|+.+..-
T Consensus 334 GlKSGK~LKEfrGHs---Syvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 334 GLKSGKCLKEFRGHS---SYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred ccccchhHHHhcCcc---ccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 33443 6777776 677765555444 4469999999999999999999988654
No 94
>KOG0289|consensus
Probab=90.13 E-value=8.8 Score=39.61 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=72.3
Q ss_pred ccceeeCCC-ceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc--CCCCCceeeeeeeC--CEEEEEECCe
Q psy2153 8 PYPLNKILD-TALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHSVRSLAAVY--NKVWCGYKNK 82 (325)
Q Consensus 8 ~L~~IkL~d-sVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L--G~~~~PV~cml~v~--~~LW~g~gnk 82 (325)
-||...+|+ .-+.|....+.+.-|=.|-++++|++..+. ++.+ |. +.-|+....+. +.+-.|+.+.
T Consensus 213 gLH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q--------~l~~~~Gh-~kki~~v~~~~~~~~v~~aSad~ 283 (506)
T KOG0289|consen 213 GLHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ--------ILATLKGH-TKKITSVKFHKDLDTVITASADE 283 (506)
T ss_pred ceeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhh--------hhhhccCc-ceEEEEEEeccchhheeecCCcc
Confidence 378888887 445666666888888888899999976542 2222 33 23344444443 5677788888
Q ss_pred -EEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeee
Q psy2153 83 -IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 83 -I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
|+|.....- .....|. ..|+.+-..-.| -.++-+++.+....|.++...|..+
T Consensus 284 ~i~vws~~~~s~~~~~~~h~---~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v 341 (506)
T KOG0289|consen 284 IIRVWSVPLSSEPTSSRPHE---EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV 341 (506)
T ss_pred eEEeeccccccCcccccccc---ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence 555443333 2233343 566654443222 4567788888888887776665443
No 95
>KOG2106|consensus
Probab=89.98 E-value=5 Score=42.10 Aligned_cols=126 Identities=13% Similarity=0.245 Sum_probs=85.6
Q ss_pred CCCCccceeeCCC---ceeeeEEeCCeEEEEecCC-----------cEEEEEcCCCCCCCCC----CCeEEEcCCC----
Q psy2153 4 PHPTPYPLNKILD---TALPPVHVQGRVVCALADG-----------SVAIFRRGPDGQWDLS----KYHTVTLGLP---- 61 (325)
Q Consensus 4 ~~~~~L~~IkL~d---sVl~I~~~~~~VfVgLANG-----------tLaVF~R~~~g~WD~~----~~~~I~LG~~---- 61 (325)
..|++++.++||| .|--|.--+.-++||.... ++.++-. .++.|-+. ....++-|..
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh-~delwgla~hps~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGH-GDELWGLATHPSKNQLLTCGQDKHVR 393 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEec-ccceeeEEcCCChhheeeccCcceEE
Confidence 4689999999998 5666665555566665543 3555543 33455321 1122222221
Q ss_pred -------------CCceeeeeeeC-CEEEEEEC-CeEEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEe-CCCeEE
Q psy2153 62 -------------HHSVRSLAAVY-NKVWCGYK-NKIHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLR 125 (325)
Q Consensus 62 -------------~~PV~cml~v~-~~LW~g~g-nkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~-~ss~Ir 125 (325)
..|..|.-... +.|=+|.. .+-+|+|+++....+.|.+ ..++++|..+.+|-++|+- .+..|+
T Consensus 394 lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 394 LWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred EccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 13677766553 56666665 7799999999878889998 8999999999999988886 488899
Q ss_pred EEecCc
Q psy2153 126 MYNAHT 131 (325)
Q Consensus 126 L~ha~T 131 (325)
+|-...
T Consensus 473 iy~Vs~ 478 (626)
T KOG2106|consen 473 IYRVSA 478 (626)
T ss_pred EEEECC
Confidence 886543
No 96
>KOG0319|consensus
Probab=89.68 E-value=4.5 Score=43.85 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=50.2
Q ss_pred CCEEEEEECCeEEEEcCCCCc--eeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccc
Q psy2153 72 YNKVWCGYKNKIHVVDPKSLK--SFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 72 ~~~LW~g~gnkI~VIn~~Tlk--sf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e 133 (325)
+..|+|.|+|.|.+++..|.. .....+..+..|++++...+. +-++..++-.+|+|+..|.+
T Consensus 31 G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk 95 (775)
T KOG0319|consen 31 GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGK 95 (775)
T ss_pred CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccch
Confidence 579999999999999999983 445566667889987776444 66788889999999998883
No 97
>KOG1408|consensus
Probab=89.67 E-value=3.1 Score=45.32 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=68.8
Q ss_pred ceeeeEEeCCeEEEEecCCcEEEEEcCCCC---C-----------CCCCCCeEEEcCC-CC-Cc--eeeeeee--CCEEE
Q psy2153 17 TALPPVHVQGRVVCALADGSVAIFRRGPDG---Q-----------WDLSKYHTVTLGL-PH-HS--VRSLAAV--YNKVW 76 (325)
Q Consensus 17 sVl~I~~~~~~VfVgLANGtLaVF~R~~~g---~-----------WD~~~~~~I~LG~-~~-~P--V~cml~v--~~~LW 76 (325)
-..||+..+..+|+|.|+|.|-+|....-. . -++.++..+..+. |. -| |. |..- .++|=
T Consensus 262 nAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA-~~Fdet~~kls 340 (1080)
T KOG1408|consen 262 NANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIA-CQFDETTDKLS 340 (1080)
T ss_pred ccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeE-EEecCCCceEE
Confidence 457999999999999999999999754211 0 1111121122221 00 11 22 2222 37888
Q ss_pred EEECCe-EEEEcCCCC----c--eeEecCC--------C-CCceeEEEEeCCeEEEEEeCCCeEEEEecCccce
Q psy2153 77 CGYKNK-IHVVDPKSL----K--SFDAHPR--------R-ESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 77 ~g~gnk-I~VIn~~Tl----k--sf~~~~~--------~-~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
|-|.|. +||.|.+.. | +|--|+. + +..=..-+....+-++.++.+.+||||+.+...+
T Consensus 341 cVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 341 CVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred EEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 999987 999998776 1 2222220 0 0000011222356699999999999999988554
No 98
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=89.62 E-value=0.97 Score=32.27 Aligned_cols=44 Identities=11% Similarity=0.106 Sum_probs=35.8
Q ss_pred CCCccceeeCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCC
Q psy2153 5 HPTPYPLNKILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQW 48 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~W 48 (325)
+|+.+.+=.|++.|.++.++.. -+-+|..+|+|.+|+-+-...|
T Consensus 1 ~f~~~~~k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qriw 46 (47)
T PF12894_consen 1 SFRQLGEKNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRIW 46 (47)
T ss_pred CcceecccCCCCcEEEEEECCCCCEEEEEECCCeEEEEECCCcCcc
Confidence 4778888899999999999754 5888999999999997544445
No 99
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.56 E-value=0.2 Score=51.55 Aligned_cols=97 Identities=19% Similarity=0.248 Sum_probs=51.7
Q ss_pred eCCeEEEEecCCcEEEEEcCC----CCCCCCCCCeEEEcCCCC--CceeeeeeeCCEEEEEECCeEEEEcCCCCceeEec
Q psy2153 24 VQGRVVCALADGSVAIFRRGP----DGQWDLSKYHTVTLGLPH--HSVRSLAAVYNKVWCGYKNKIHVVDPKSLKSFDAH 97 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~----~g~WD~~~~~~I~LG~~~--~PV~cml~v~~~LW~g~gnkI~VIn~~Tlksf~~~ 97 (325)
.++.++|+++||.|+.+.|.. ++.|.. ...+... ..++.++.-. +..... ...
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~-----~~~~~~~~~~~l~g~~~~~-------------~~~~~~---~~~ 215 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSE-----ELFNDSSWLRSLSGLFPWS-------------YRGDNS---SSS 215 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE---------STHHHHHCCTTTS-TT----------------SSS---S--
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEE-----EEeCCCchhhhhhCcCCcc-------------cccCCC---CCC
Confidence 678999999999999999986 223432 2222210 1122222221 100000 000
Q ss_pred CCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 98 PRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 98 ~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
......+.++...+..+=+++..+.+||+||.+|.+++..+|+-
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 00001122222345666669999999999999999999999987
No 100
>KOG2111|consensus
Probab=89.40 E-value=6 Score=39.27 Aligned_cols=125 Identities=10% Similarity=0.188 Sum_probs=84.7
Q ss_pred CCC-CCCccceeeCCC---ceeeeEEeCCe---EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CC
Q psy2153 2 EYP-HPTPYPLNKILD---TALPPVHVQGR---VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YN 73 (325)
Q Consensus 2 ~~~-~~~~L~~IkL~d---sVl~I~~~~~~---VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~ 73 (325)
.|| ++|.+|.+.-.+ ..-++++..++ +|=|..-|+|-|-+-.... ...|..|.-.. ++|.||..- .+
T Consensus 119 tF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~---~~~p~~I~AH~--s~Iacv~Ln~~G 193 (346)
T KOG2111|consen 119 TFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTK---PNAPSIINAHD--SDIACVALNLQG 193 (346)
T ss_pred EcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcC---cCCceEEEccc--CceeEEEEcCCc
Confidence 377 788888887654 55555555443 3445666766666533221 12567777666 899998665 57
Q ss_pred EEEEEECCe---EEEEcCCCCcee-EecCC-CCCceeEEEEeCCeEEEEEeC-CCeEEEEecCc
Q psy2153 74 KVWCGYKNK---IHVVDPKSLKSF-DAHPR-RESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHT 131 (325)
Q Consensus 74 ~LW~g~gnk---I~VIn~~Tlksf-~~~~~-~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T 131 (325)
++-+.+..| |-|+|+++.+.+ |...- ....|.+|+-+.+.-|++... ..||.+|-.+.
T Consensus 194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 888876655 999999998333 33321 237899999999999999986 67888776543
No 101
>KOG1188|consensus
Probab=89.26 E-value=1.4 Score=43.89 Aligned_cols=127 Identities=14% Similarity=0.184 Sum_probs=77.5
Q ss_pred CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 73 NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 73 ~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
..+=+++.|. |.+.|..|. ..|..++..-..|+-+-.++-.+-+++..+.+||+||+.+.....-|+-...-.+.+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5567788755 999999996 577777766566665554333455599999999999999999887777765432222
Q ss_pred ccc-ccc--ccceeeccccccccccCccccCCCccccccccc-cccceeeeeccC
Q psy2153 149 GMY-TFC--SCVTIRTLLAETIISPFGWYANNPADILESFTV-CQSHLLCIASVP 199 (325)
Q Consensus 149 ~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~-~~~~~~ci~~vp 199 (325)
.-+ .+| ..-.-+|.+-+.-.+..-||+.+--..++.++. ++.-+-|+.=.|
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 100 000 000112333333333444888777665666643 666666665444
No 102
>KOG0283|consensus
Probab=89.22 E-value=3.8 Score=44.43 Aligned_cols=125 Identities=16% Similarity=0.211 Sum_probs=86.7
Q ss_pred CCCccceeeCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC----CCCceeeeeee---CCEE
Q psy2153 5 HPTPYPLNKILDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL----PHHSVRSLAAV---YNKV 75 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~----~~~PV~cml~v---~~~L 75 (325)
+-+...--.|++-|++++|. .+..+||.=||...+|. ..|. .+.....|.+-. ....|+.+... .++|
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~--t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~v 517 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYD--TEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEV 517 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEE--ccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeE
Confidence 34455555688999999997 45799999999999998 3331 122223344432 12357777666 3678
Q ss_pred EEEECCe-EEEEcC--CCC-ceeEecCCCCCcee-EEEEeCCeEEEEEeCCCeEEEEecCccc
Q psy2153 76 WCGYKNK-IHVVDP--KSL-KSFDAHPRRESQVR-QMTWAGDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 76 W~g~gnk-I~VIn~--~Tl-ksf~~~~~~~~~V~-~Ma~~G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
-+.+.++ |-|+|. +.+ +.|....+..+|++ .+...|..|- +-+.++.|++|+...+.
T Consensus 518 LVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV-s~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 518 LVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV-SASEDSWVYIWKNDSFN 579 (712)
T ss_pred EEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE-EeecCceEEEEeCCCCc
Confidence 8888855 999999 445 67777777778887 4555677665 55599999999975544
No 103
>KOG0313|consensus
Probab=88.81 E-value=1.8 Score=43.74 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=79.1
Q ss_pred CceeeeEEeCCeEEEE-ecCCcEEEEEcCCCCCCCCCCCeEE-EcCCCCCceeeeeeeC--CEEEEEECCe-EEEEcCCC
Q psy2153 16 DTALPPVHVQGRVVCA-LADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKS 90 (325)
Q Consensus 16 dsVl~I~~~~~~VfVg-LANGtLaVF~R~~~g~WD~~~~~~I-~LG~~~~PV~cml~v~--~~LW~g~gnk-I~VIn~~T 90 (325)
++|.++++.+..+.-+ =-|-+|- .||+.--..+ .+- -..++.|.-... +-|-|||.++ |-+-||++
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk--------~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIK--------VWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cceeeEEEcCCCceEeecccceEE--------EEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 4677777766433222 2233333 3554433222 221 126788876554 5677888888 77889988
Q ss_pred C------ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccc-eeeeeecchhhhhhcc
Q psy2153 91 L------KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQ-HLQDVDIEPYVSKMLG 149 (325)
Q Consensus 91 l------ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e-~LqdIdIa~~v~~~l~ 149 (325)
. ++|.-|. .=|+.+.++ .....+|.+.+.+++|||..+-+ .|.+|+-... |+|.
T Consensus 332 ~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--Kvl~ 394 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--KVLS 394 (423)
T ss_pred CCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--eEEE
Confidence 7 5677777 356655554 45689999999999999999999 9999887753 6663
No 104
>KOG0310|consensus
Probab=88.65 E-value=7.4 Score=40.36 Aligned_cols=110 Identities=16% Similarity=0.194 Sum_probs=78.4
Q ss_pred ceeeeEE--eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeE-EEcCCCCCceeeeeee--CCEEEE--EECCeEEEEcCC
Q psy2153 17 TALPPVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTLGLPHHSVRSLAAV--YNKVWC--GYKNKIHVVDPK 89 (325)
Q Consensus 17 sVl~I~~--~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~-I~LG~~~~PV~cml~v--~~~LW~--g~gnkI~VIn~~ 89 (325)
+|..+.| .++.+|+.-.|+.+.-| ||++.-.. +.+....-=|||...+ ++++.+ ||-.+|.+.|++
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~v~k~-------~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDKVVKY-------WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred ceeEEEecccCCeEEEecCCCceEEE-------EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 4555554 48889999999887776 55544332 3454334568886555 465554 566889999999
Q ss_pred CCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccc
Q psy2153 90 SLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 90 Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
+..+-.+.-+.+..|..|..-+.|--|+...++.+++||..+..
T Consensus 185 ~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 185 SLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred cCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 98443343445688999999888888899999999999998543
No 105
>KOG0273|consensus
Probab=88.65 E-value=5.4 Score=41.40 Aligned_cols=108 Identities=16% Similarity=0.212 Sum_probs=74.3
Q ss_pred CCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECC--eEEEEcCCC
Q psy2153 15 LDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKN--KIHVVDPKS 90 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gn--kI~VIn~~T 90 (325)
+.+|++|+.. ++++..|=+||+.++|+-.+ |.|. +..++-+ .|---.--+++.=.+.|.. .|+|....-
T Consensus 276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~----q~f~~~s--~~~lDVdW~~~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVK----QQFEFHS--APALDVDWQSNDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred CCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEE----Eeeeecc--CCccceEEecCceEeecCCCceEEEEEecC
Confidence 5799999996 55799999999999998544 4443 3345544 4411112233444444543 487776544
Q ss_pred C---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCcc
Q psy2153 91 L---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 91 l---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~ 132 (325)
- ++|.-|+ ..|+.|.+...| +-.|++.+.|+++|+-..-
T Consensus 349 ~~P~~t~~GH~---g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 349 DRPVKTFIGHH---GEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred CCcceeeeccc---CceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 3 7888887 779999998555 7789999999999995433
No 106
>KOG0289|consensus
Probab=88.62 E-value=7.4 Score=40.17 Aligned_cols=78 Identities=15% Similarity=0.376 Sum_probs=63.1
Q ss_pred CceeeeeeeCCEEEEEEC---CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCcccee
Q psy2153 63 HSVRSLAAVYNKVWCGYK---NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHL 135 (325)
Q Consensus 63 ~PV~cml~v~~~LW~g~g---nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~L 135 (325)
--+++...+.|-|-.|.| ..|.|.|.++- ..|..|. ..|+.+.-+..|-|++... +..|+|||-..++..
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 458899999888777666 33889998887 4666665 8899999999999999876 444999999999988
Q ss_pred eeeecchh
Q psy2153 136 QDVDIEPY 143 (325)
Q Consensus 136 qdIdIa~~ 143 (325)
+.|-+...
T Consensus 425 kt~~l~~~ 432 (506)
T KOG0289|consen 425 KTIQLDEK 432 (506)
T ss_pred ceeecccc
Confidence 88887763
No 107
>KOG2110|consensus
Probab=88.55 E-value=6.2 Score=39.78 Aligned_cols=144 Identities=14% Similarity=0.193 Sum_probs=91.8
Q ss_pred CceeeeeeeCCEEEEEECCeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEe---CCCeEEEEecCccceee
Q psy2153 63 HSVRSLAAVYNKVWCGYKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIR---LDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 63 ~PV~cml~v~~~LW~g~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~---~ss~IrL~ha~T~e~Lq 136 (325)
+||-+.-.-.++|-+-=..+|||-|-++| ++.+..+....-+-.|.....+-+++.- ...-|+|||+.+++...
T Consensus 88 t~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~ 167 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN 167 (391)
T ss_pred CceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee
Confidence 45555444458888888899999999999 5555554444555556655555566654 45569999999999999
Q ss_pred eeecchhhhhhcccccccccceeeccccccccccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEe
Q psy2153 137 DVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLI 216 (325)
Q Consensus 137 dIdIa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~ 216 (325)
.|+.-..--..| ++++.| ++. =-|+.-+++||.|.+=+.+-+ -+-..|..+++|-||-.
T Consensus 168 ~I~aH~~~lAal-afs~~G-----~ll---------ATASeKGTVIRVf~v~~G~kl------~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 168 TINAHKGPLAAL-AFSPDG-----TLL---------ATASEKGTVIRVFSVPEGQKL------YEFRRGTYPVSIYSLSF 226 (391)
T ss_pred EEEecCCceeEE-EECCCC-----CEE---------EEeccCceEEEEEEcCCccEe------eeeeCCceeeEEEEEEE
Confidence 999432211111 011111 111 146788999999976332221 01135667999999999
Q ss_pred eCCeeeEeCCC
Q psy2153 217 SSSRLWIGTAS 227 (325)
Q Consensus 217 ~~~~LWiGTs~ 227 (325)
..+.-+++.+.
T Consensus 227 s~ds~~L~~sS 237 (391)
T KOG2110|consen 227 SPDSQFLAASS 237 (391)
T ss_pred CCCCCeEEEec
Confidence 98886666543
No 108
>KOG0282|consensus
Probab=87.82 E-value=2.5 Score=43.79 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=90.0
Q ss_pred ccceeeCCCceeeeEEe---CCeEEEEecCCcEEEEEcCCC----------C------------------------CCCC
Q psy2153 8 PYPLNKILDTALPPVHV---QGRVVCALADGSVAIFRRGPD----------G------------------------QWDL 50 (325)
Q Consensus 8 ~L~~IkL~dsVl~I~~~---~~~VfVgLANGtLaVF~R~~~----------g------------------------~WD~ 50 (325)
.+.+.++.-.+.|+.+. .|-++||++||+|.-|+-.+. | .|+.
T Consensus 292 ~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 292 VLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred EEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 35567777788888885 256899999999988874331 1 2443
Q ss_pred CCCeEEEcC--CCCCceeeeeeeCCEEEEEEC---CeEEEEcCCCC------ceeEecCCCCCceeEEEEeCCeEEEEEe
Q psy2153 51 SKYHTVTLG--LPHHSVRSLAAVYNKVWCGYK---NKIHVVDPKSL------KSFDAHPRRESQVRQMTWAGDGVWVSIR 119 (325)
Q Consensus 51 ~~~~~I~LG--~~~~PV~cml~v~~~LW~g~g---nkI~VIn~~Tl------ksf~~~~~~~~~V~~Ma~~G~GVWiS~~ 119 (325)
+-+-.++.- ...+...|+....+.=|.+|+ |+|+++.+... |.|+-|.-.+-.+.+=.+-+.+--+|-.
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 333222221 111445677777777787776 77999987665 6888888666666655544445666888
Q ss_pred CCCeEEEEecCccceeeeeec
Q psy2153 120 LDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 120 ~ss~IrL~ha~T~e~LqdIdI 140 (325)
.++.+..||..|.+.+..+-.
T Consensus 452 sdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CCccEEEeechhhhhhhcccc
Confidence 899999999999887665544
No 109
>KOG2096|consensus
Probab=87.48 E-value=3.3 Score=41.33 Aligned_cols=115 Identities=15% Similarity=0.241 Sum_probs=79.8
Q ss_pred CceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-C-----CCceee-eeeeCCEEEEEECCeEEEE
Q psy2153 16 DTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-P-----HHSVRS-LAAVYNKVWCGYKNKIHVV 86 (325)
Q Consensus 16 dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~-----~~PV~c-ml~v~~~LW~g~gnkI~VI 86 (325)
++|+..++.++ |..-.-.||+.-||+-+-.=. --+.|+++..|+ | ..|+|- |.+-++.|=++.|..+.++
T Consensus 279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~-~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~ 357 (420)
T KOG2096|consen 279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE-AGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVF 357 (420)
T ss_pred hheeeeeeCCCcceeEEEecCCcEEEeeccceEe-cCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEE
Confidence 47888877654 455556678888877442100 114567788874 1 267764 3444566777888889999
Q ss_pred cCCCCceeEecC-CCCCceeEEEEeCCeEEEEEeCCCeEEEEecCc
Q psy2153 87 DPKSLKSFDAHP-RRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 87 n~~Tlksf~~~~-~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T 131 (325)
++++.+-++.-. -.+..|+++.++.+|=+++.-.+-.+|+++-..
T Consensus 358 ~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~vrv~~ntp 403 (420)
T KOG2096|consen 358 ASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRYVRVIRNTP 403 (420)
T ss_pred EcccCccchhHHHhhcCceeeEEecCCCcEEeeecceeeeeecCCC
Confidence 999985443222 124789999999999999999999999999543
No 110
>KOG0305|consensus
Probab=87.09 E-value=3.5 Score=42.97 Aligned_cols=132 Identities=16% Similarity=0.169 Sum_probs=93.2
Q ss_pred CccceeeC--CCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEE-cCCCCCceeeeeeeCCEEEEEEC---
Q psy2153 7 TPYPLNKI--LDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-LGLPHHSVRSLAAVYNKVWCGYK--- 80 (325)
Q Consensus 7 ~~L~~IkL--~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~-LG~~~~PV~cml~v~~~LW~g~g--- 80 (325)
|..+.++. ..-|-||......+-.|-.+|.+.+|+-.... +.+. +....+-|-.|-.-.|....|+|
T Consensus 250 k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-------~~~~~~~~H~qeVCgLkws~d~~~lASGgnD 322 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-------HVVSTLQGHRQEVCGLKWSPDGNQLASGGND 322 (484)
T ss_pred cccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecch-------hhhhhhhcccceeeeeEECCCCCeeccCCCc
Confidence 44555666 67899999999999999999999999843321 1111 22122456556566677777776
Q ss_pred CeEEEEcCCCC---ceeEecCCCCCceeEEEEe--CCeEEEEE--eCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 81 NKIHVVDPKSL---KSFDAHPRRESQVRQMTWA--GDGVWVSI--RLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 81 nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~--G~GVWiS~--~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
|+++|.|..+. +.|.-|. ..|..|++. -.|+-.+- ..+..|+.||+.|.++++.||.-..|..+.
T Consensus 323 N~~~Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~ 394 (484)
T KOG0305|consen 323 NVVFIWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLI 394 (484)
T ss_pred cceEeccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEE
Confidence 55999998554 5677777 778888875 23333222 357789999999999999999998887776
No 111
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.95 E-value=11 Score=37.24 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=33.7
Q ss_pred eeeeCCEEEEEECCeEEEEcCCCC------ceeEecCC--CCCceeEEEEeCCeEEEEEeC
Q psy2153 68 LAAVYNKVWCGYKNKIHVVDPKSL------KSFDAHPR--RESQVRQMTWAGDGVWVSIRL 120 (325)
Q Consensus 68 ml~v~~~LW~g~gnkI~VIn~~Tl------ksf~~~~~--~~~~V~~Ma~~G~GVWiS~~~ 120 (325)
|..+.+++++-.+.-|+|.||..- .-|+.... ....++.+- -|.||-+++..
T Consensus 209 ~~s~ynR~faF~rGGi~vgnP~~~e~~~f~RlfDf~~~~yap~R~nal~-~gGGil~~fNa 268 (339)
T PF09910_consen 209 MASAYNRLFAFVRGGIFVGNPYNGEEFRFYRLFDFPYTFYAPFRVNALP-IGGGILIAFNA 268 (339)
T ss_pred EEEEeeeEEEEEeccEEEeCCCCCCceeEEEeeeccCCccCcceecceE-eCCeEEEEecc
Confidence 566678999999999999999854 33444421 223333333 45688888764
No 112
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=86.84 E-value=5.4 Score=42.45 Aligned_cols=22 Identities=32% Similarity=0.718 Sum_probs=14.4
Q ss_pred eEEEEEEee-CCeeeEeCCCCcc
Q psy2153 209 VRITALLIS-SSRLWIGTASGKA 230 (325)
Q Consensus 209 ~riTsLl~~-~~~LWiGTs~G~~ 230 (325)
-+|.+++-- ++.|||||+.|++
T Consensus 419 s~V~aived~dnsLWIGTs~Glv 441 (671)
T COG3292 419 SEVSAIVEDPDNSLWIGTSGGLV 441 (671)
T ss_pred cceeeeeecCCCCEEEeccCCeE
Confidence 344454432 3449999999984
No 113
>KOG0296|consensus
Probab=86.74 E-value=4.2 Score=40.96 Aligned_cols=89 Identities=16% Similarity=0.262 Sum_probs=65.5
Q ss_pred EEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCce
Q psy2153 30 CALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQV 104 (325)
Q Consensus 30 VgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V 104 (325)
+|.-+|+|++|+-.+ |-+ +.+..-. .+|+.+...+ +-|..+|.|- |+.+|++|. ..+.-|+ ..|
T Consensus 303 ~G~vdG~i~iyD~a~---~~~---R~~c~he--~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~---~~I 371 (399)
T KOG0296|consen 303 CGSVDGTIAIYDLAA---STL---RHICEHE--DGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQ---MGI 371 (399)
T ss_pred cccccceEEEEeccc---chh---heeccCC--CceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCc---hhe
Confidence 578899999998533 222 2233322 5788887777 7789999865 999999998 3455566 779
Q ss_pred eEEEEeCCe-EEEEEeCCCeEEEEec
Q psy2153 105 RQMTWAGDG-VWVSIRLDSTLRMYNA 129 (325)
Q Consensus 105 ~~Ma~~G~G-VWiS~~~ss~IrL~ha 129 (325)
.+|+.+.++ .-++.+.+.+.++|..
T Consensus 372 l~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 372 LDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred eEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999988544 6678899999999875
No 114
>KOG0285|consensus
Probab=86.58 E-value=2.8 Score=42.30 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCCCCCCeEEEc--CCCCCceeeeeee--CCEEEEEECCe-EEEEcCCCCc---eeEecCCCCCceeE-EEEeCCeEEEE
Q psy2153 47 QWDLSKYHTVTL--GLPHHSVRSLAAV--YNKVWCGYKNK-IHVVDPKSLK---SFDAHPRRESQVRQ-MTWAGDGVWVS 117 (325)
Q Consensus 47 ~WD~~~~~~I~L--G~~~~PV~cml~v--~~~LW~g~gnk-I~VIn~~Tlk---sf~~~~~~~~~V~~-Ma~~G~GVWiS 117 (325)
+||++..++|.- |. -+.|.||... .|.|.-|.+++ +-|.|..|.. .+.-|. ..|.. |+-.-++--|+
T Consensus 219 CwDLe~nkvIR~YhGH-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~---~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGH-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT---NPVASVMCQPTDPQVIT 294 (460)
T ss_pred EEechhhhhHHHhccc-cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCC---CcceeEEeecCCCceEE
Confidence 699888877754 43 3679998887 47777777766 8899999983 344455 34443 34444566779
Q ss_pred EeCCCeEEEEecCccceeee
Q psy2153 118 IRLDSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 118 ~~~ss~IrL~ha~T~e~Lqd 137 (325)
.+.+++|||||-.-.+-...
T Consensus 295 ~S~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred ecCCceEEEeeeccCceeEe
Confidence 99999999999877765443
No 115
>KOG1539|consensus
Probab=86.38 E-value=12 Score=41.21 Aligned_cols=101 Identities=14% Similarity=0.217 Sum_probs=75.9
Q ss_pred eeeEEeCCeEEEEecCCc-EEEEEcCCCCCCCCCCCeEEEcCCC-CCceeeeeeeCCEEEEEECCeEEEEcCCCC--cee
Q psy2153 19 LPPVHVQGRVVCALADGS-VAIFRRGPDGQWDLSKYHTVTLGLP-HHSVRSLAAVYNKVWCGYKNKIHVVDPKSL--KSF 94 (325)
Q Consensus 19 l~I~~~~~~VfVgLANGt-LaVF~R~~~g~WD~~~~~~I~LG~~-~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl--ksf 94 (325)
....-.+..+||-..=|+ .-+|+- +.-..+-++.| ..-|+||..-.+.+++|+||+|++.--.-. +.+
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~--------~kl~ll~vs~~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~ 110 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDV--------NKLNLLFVSKPLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTT 110 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEec--------cceEEEEecCCCCCceEEEEecCceEEEecCcEEEEEEccceEEEEe
Confidence 444455667777776664 566752 33356667743 256999999999999999999999876644 455
Q ss_pred EecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCc
Q psy2153 95 DAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T 131 (325)
.-|. .+|.+|..-|..+ ||+..+..|.+|++.+
T Consensus 111 ~~~~---a~v~~l~~fGe~l-ia~d~~~~l~vw~~s~ 143 (910)
T KOG1539|consen 111 LLHG---AKVHLLLPFGEHL-IAVDISNILFVWKTSS 143 (910)
T ss_pred cccc---ceEEEEeeecceE-EEEEccCcEEEEEecc
Confidence 5555 7899999998766 5999999999999998
No 116
>KOG1645|consensus
Probab=86.37 E-value=3.6 Score=42.02 Aligned_cols=24 Identities=13% Similarity=0.301 Sum_probs=21.2
Q ss_pred CCCeEEEEecCccceeeeeecchh
Q psy2153 120 LDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 120 ~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
....++|||+.+++.+|+.-+..+
T Consensus 409 ~tn~lil~D~~s~evvQ~l~~~ep 432 (463)
T KOG1645|consen 409 STNELILQDPHSFEVVQTLALSEP 432 (463)
T ss_pred CcceeEEeccchhheeeecccCcc
Confidence 667799999999999999988854
No 117
>KOG1273|consensus
Probab=86.17 E-value=11 Score=37.70 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=77.2
Q ss_pred CCccceeeCCCceeeeEEe---CCeEEEEecCCc--EEEEEcCCCCCCCCCCCeEEEcCCCC-C-ce-ee--eeeeCCEE
Q psy2153 6 PTPYPLNKILDTALPPVHV---QGRVVCALADGS--VAIFRRGPDGQWDLSKYHTVTLGLPH-H-SV-RS--LAAVYNKV 75 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~---~~~VfVgLANGt--LaVF~R~~~g~WD~~~~~~I~LG~~~-~-PV-~c--ml~v~~~L 75 (325)
..+|++|+++++|..--++ +|++.|.+-+-. |..|.. ..+.+++..++. . -+ +| .-.-++-+
T Consensus 97 gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--------~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 97 GSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--------PKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred CCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--------CceeeccCCCccccccccccccccCCCCEE
Confidence 4589999999999887764 555666655543 333331 111233332211 0 00 11 11224667
Q ss_pred EEEEC-CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCcccee
Q psy2153 76 WCGYK-NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHL 135 (325)
Q Consensus 76 W~g~g-nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~L 135 (325)
+.|.+ +++.|++++|+ .+|.... -.+|.++..+..|=.+.+.. +-+||.|+.+..-+.
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc
Confidence 88876 78999999999 4565544 47899999998887777765 788999998866555
No 118
>KOG0973|consensus
Probab=85.98 E-value=11 Score=42.23 Aligned_cols=119 Identities=15% Similarity=0.260 Sum_probs=76.4
Q ss_pred CceeeeEEeCC--eEEEEecCCcEEEEEcCC-CCC---C------CCCCCeEEEc--CCCCCceeeeeee-CCEEEEEEC
Q psy2153 16 DTALPPVHVQG--RVVCALADGSVAIFRRGP-DGQ---W------DLSKYHTVTL--GLPHHSVRSLAAV-YNKVWCGYK 80 (325)
Q Consensus 16 dsVl~I~~~~~--~VfVgLANGtLaVF~R~~-~g~---W------D~~~~~~I~L--G~~~~PV~cml~v-~~~LW~g~g 80 (325)
.+|.|+.+..+ ++..|--|.-+.|.+|.. ... | +.++.+.+.+ |.+ .=|.-+.-- ++.+-+.++
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-SDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-CccceeccCCCccEEEEec
Confidence 48999987533 566666677788999873 112 2 2334444332 432 223222211 355555555
Q ss_pred --CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEe-CCCeEEEEecCccceeeee
Q psy2153 81 --NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 81 --nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~-~ss~IrL~ha~T~e~LqdI 138 (325)
|+|+|.|.+|+ +.++.|+ +.|.-+.++..|=++|-. .|-+|++|.+.++..-..|
T Consensus 149 ~DnsViiwn~~tF~~~~vl~~H~---s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I 209 (942)
T KOG0973|consen 149 LDNSVIIWNAKTFELLKVLRGHQ---SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI 209 (942)
T ss_pred ccceEEEEccccceeeeeeeccc---ccccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence 78999999999 4556666 999999999888777665 5899999997775443333
No 119
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=85.45 E-value=5.7 Score=38.34 Aligned_cols=133 Identities=8% Similarity=0.113 Sum_probs=85.3
Q ss_pred CCccceeeCCCcee--eeEEeCCeEEE-EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-C
Q psy2153 6 PTPYPLNKILDTAL--PPVHVQGRVVC-ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-N 81 (325)
Q Consensus 6 ~~~L~~IkL~dsVl--~I~~~~~~VfV-gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-n 81 (325)
-|.+++.+||+... -|...++++|. .=.+|...+|+++. ++....++.-. . =-.|..-+++||.+-| +
T Consensus 78 g~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t-----l~~~~~~~y~~--E-GWGLt~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 78 GKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT-----LKKIGTFPYPG--E-GWGLTSDGKRLIMSDGSS 149 (264)
T ss_dssp SSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT-----TEEEEEEE-SS--S---EEEECSSCEEEE-SSS
T ss_pred CcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc-----ceEEEEEecCC--c-ceEEEcCCCEEEEECCcc
Confidence 36677778887543 24445777765 34677888888653 22222232211 1 1134455689999999 6
Q ss_pred eEEEEcCCCC---ceeEecCC--CCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhh
Q psy2153 82 KIHVVDPKSL---KSFDAHPR--RESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 146 (325)
Q Consensus 82 kI~VIn~~Tl---ksf~~~~~--~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~ 146 (325)
+++.+||+++ ++.++..+ +-..++.|.+.+..||.-+=.+..|-.-|++|.+....+|++.-..+
T Consensus 150 ~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~ 219 (264)
T PF05096_consen 150 RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPE 219 (264)
T ss_dssp EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHH
T ss_pred ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhc
Confidence 7999999999 56666543 34677889999989999999999999999999999999999876543
No 120
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=85.04 E-value=3.4 Score=26.50 Aligned_cols=33 Identities=27% Similarity=0.616 Sum_probs=26.8
Q ss_pred eeEecCCCCCceeEEEEeCC-eEEEEEeCCCeEEEEe
Q psy2153 93 SFDAHPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYN 128 (325)
Q Consensus 93 sf~~~~~~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~h 128 (325)
+|..|. ..|++|+.... ...++...+.+|++||
T Consensus 6 ~~~~h~---~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHS---SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSS---SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCC---CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 455555 78999999866 5777888999999997
No 121
>KOG0645|consensus
Probab=85.02 E-value=41 Score=33.04 Aligned_cols=121 Identities=17% Similarity=0.309 Sum_probs=76.3
Q ss_pred ceeeeEE--eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEE-ECCe-EEEEcCCCC
Q psy2153 17 TALPPVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCG-YKNK-IHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~--~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g-~gnk-I~VIn~~Tl 91 (325)
+|-++.. ..+.|-+|-=|+++.||.+. ++.|.. +=.|--+..-|+|..--. +.+-+- +++| |.|.....-
T Consensus 63 sVRsvAwsp~g~~La~aSFD~t~~Iw~k~-~~efec----v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded 137 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASFDATVVIWKKE-DGEFEC----VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED 137 (312)
T ss_pred eeeeeeecCCCcEEEEeeccceEEEeecC-CCceeE----EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC
Confidence 4444444 35567777778999999965 344432 122322356788876664 444443 3344 888777655
Q ss_pred ceeE---ecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecC---ccceeeeeecch
Q psy2153 92 KSFD---AHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAH---TYQHLQDVDIEP 142 (325)
Q Consensus 92 ksf~---~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~---T~e~LqdIdIa~ 142 (325)
..|+ +-++.-.-|.+.++.+ .++-.|.+-+.+|++|.-+ ..++.|.+|=.+
T Consensus 138 dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~ 195 (312)
T KOG0645|consen 138 DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHE 195 (312)
T ss_pred CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCcc
Confidence 4443 2233446677777774 5788899999999999876 566777777553
No 122
>KOG0268|consensus
Probab=84.94 E-value=4.2 Score=41.10 Aligned_cols=124 Identities=14% Similarity=0.210 Sum_probs=88.8
Q ss_pred CCCCCccceeeCC-CceeeeEEe--CCeEEEEe-cCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEE
Q psy2153 3 YPHPTPYPLNKIL-DTALPPVHV--QGRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCG 78 (325)
Q Consensus 3 ~~~~~~L~~IkL~-dsVl~I~~~--~~~VfVgL-ANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g 78 (325)
+++-+|+.+++.. |++.|+.+. +-.++++. +|++|.+|+-..+ .+-+-|.++.-..-| |.-+=....-+|
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~-----~Pl~KVi~~mRTN~I-swnPeafnF~~a 247 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA-----SPLKKVILTMRTNTI-CWNPEAFNFVAA 247 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC-----Cccceeeeeccccce-ecCccccceeec
Confidence 4566788888887 789999985 44677777 8999999994332 333555665432333 555522334456
Q ss_pred ECCe-EEEEcCCCC-ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCcc
Q psy2153 79 YKNK-IHVVDPKSL-KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 79 ~gnk-I~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~ 132 (325)
..+. +|.+|+..| +.+.+|.+..+.|.....+..| =++|-+-+-+||+|.+...
T Consensus 248 ~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 248 NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence 6655 999999999 7888999888888888777666 6788888999999876543
No 123
>KOG0284|consensus
Probab=84.89 E-value=2.2 Score=43.46 Aligned_cols=118 Identities=11% Similarity=0.144 Sum_probs=75.9
Q ss_pred CceeeeEEeCCeEEE--EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CCEEEEEEC--CeEEEEcCCC
Q psy2153 16 DTALPPVHVQGRVVC--ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYK--NKIHVVDPKS 90 (325)
Q Consensus 16 dsVl~I~~~~~~VfV--gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~~LW~g~g--nkI~VIn~~T 90 (325)
++|.++.+.-+.-|. |=.+|.|=+++.+ .++.+.+.=- -...||||..- .|...++|. |.|.|.|..-
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn------mnnVk~~~ah-h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPN------MNNVKIIQAH-HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccc------hhhhHHhhHh-hhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 578888876544443 3344444444422 1222222221 12689999877 578888887 4588888765
Q ss_pred CceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 91 LKSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 91 lksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
-|...+-.-..--|+++.|. -.|.-.|...+..|++||+.|.++|..+-.
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~ 262 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG 262 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh
Confidence 53322222233667777776 567888999999999999999999877654
No 124
>KOG1445|consensus
Probab=84.19 E-value=3.9 Score=44.06 Aligned_cols=111 Identities=19% Similarity=0.287 Sum_probs=81.8
Q ss_pred eCCeEEEEecCCcEEEEEcCCCCC-CCCCCC-eEEEcCCCCCceeeeeee---CCEEEEEECCe-EEEEcCCCC---cee
Q psy2153 24 VQGRVVCALADGSVAIFRRGPDGQ-WDLSKY-HTVTLGLPHHSVRSLAAV---YNKVWCGYKNK-IHVVDPKSL---KSF 94 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~~g~-WD~~~~-~~I~LG~~~~PV~cml~v---~~~LW~g~gnk-I~VIn~~Tl---ksf 94 (325)
.+.++-||..+|.|-+++-.++|. -+...| +.|+.+. .-|+.+-.+ .|-|-.++-|. |.+.|..++ -.|
T Consensus 639 D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~--eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l 716 (1012)
T KOG1445|consen 639 DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG--EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL 716 (1012)
T ss_pred ChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc--ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee
Confidence 367899999999999999887764 333333 6788876 567666544 25555555554 999998888 467
Q ss_pred EecCCCCCceeEEEEeCCeEEE-EEeCCCeEEEEecCccc-eeeeee
Q psy2153 95 DAHPRRESQVRQMTWAGDGVWV-SIRLDSTLRMYNAHTYQ-HLQDVD 139 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~G~GVWi-S~~~ss~IrL~ha~T~e-~LqdId 139 (325)
.-|. .+|-.+||+.+|--+ +...+.+||+|...+.| .++|=+
T Consensus 717 ~gHt---dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~ 760 (1012)
T KOG1445|consen 717 VGHT---DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGK 760 (1012)
T ss_pred ccCc---CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCC
Confidence 7787 789999999887443 56789999999987765 566544
No 125
>KOG4649|consensus
Probab=84.15 E-value=9.8 Score=37.28 Aligned_cols=200 Identities=18% Similarity=0.135 Sum_probs=109.9
Q ss_pred CCCCCCccceeeCCCceeeeEE-eCCeEEEEecCCcEEEEEcCCC-CCCCCCCCeEEEcCCCCCceee---eeeeCCEEE
Q psy2153 2 EYPHPTPYPLNKILDTALPPVH-VQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPHHSVRS---LAAVYNKVW 76 (325)
Q Consensus 2 ~~~~~~~L~~IkL~dsVl~I~~-~~~~VfVgLANGtLaVF~R~~~-g~WD~~~~~~I~LG~~~~PV~c---ml~v~~~LW 76 (325)
.+++=++.|+--|-+.+-|=.. +.++|.+|.-+|.|.+..-+.+ -.|++ ..++. |.+ |..-.+-+|
T Consensus 39 d~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f-----~~~~~----vk~~a~~d~~~glIy 109 (354)
T KOG4649|consen 39 DPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNF-----VILET----VKVRAQCDFDGGLIY 109 (354)
T ss_pred cCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeee-----eehhh----hccceEEcCCCceEE
Confidence 3566677888888877665433 6889999999999999886665 34764 33444 333 233357899
Q ss_pred EEECCe-EEEEcCCCCcee-E--------ecC---CCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeee--ecc
Q psy2153 77 CGYKNK-IHVVDPKSLKSF-D--------AHP---RRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV--DIE 141 (325)
Q Consensus 77 ~g~gnk-I~VIn~~Tlksf-~--------~~~---~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdI--dIa 141 (325)
||+.|. .|+||+++-+.. . +.+ .....+..-.-+|.-+-++...++.=.+|-++-+.++..= =+.
T Consensus 110 cgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~ 189 (354)
T KOG4649|consen 110 CGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCVG 189 (354)
T ss_pred EecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCceecc
Confidence 999988 999999998321 1 111 0112222211122223333333444455555544443211 011
Q ss_pred hhhhhhcccccccccceeecccccc-ccccCccccCCCccccccccc-cccceeeeeccCCCCCCCcceeEEEEEEeeCC
Q psy2153 142 PYVSKMLGMYTFCSCVTIRTLLAET-IISPFGWYANNPADILESFTV-CQSHLLCIASVPGTGKLGFSFVRITALLISSS 219 (325)
Q Consensus 142 ~~v~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~f~~-~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~ 219 (325)
+ ...|.|+-|-+ .+.+++=-.-+|++-.-.|.. |.+|+.|-.=+-+. .--+.+++--.+
T Consensus 190 ~-------------sv~i~~VdG~l~~f~~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~------~~Cf~~~~p~~g 250 (354)
T KOG4649|consen 190 S-------------SVIITTVDGVLTSFDESGRQVWRPATKGPIFMEPCESRPSCQQISLEN------ENCFCAPLPIAG 250 (354)
T ss_pred c-------------eEEEEEeccEEEEEcCCCcEEEeecCCCceecccccCCCcceEEEEec------CCeEEEeccccc
Confidence 1 12233333332 244555112256666667754 88888773333222 223456666666
Q ss_pred eeeEeCCCCc
Q psy2153 220 RLWIGTASGK 229 (325)
Q Consensus 220 ~LWiGTs~G~ 229 (325)
.|-.-|..|.
T Consensus 251 hL~w~~~~g~ 260 (354)
T KOG4649|consen 251 HLLWATQSGT 260 (354)
T ss_pred eEEEEecCCc
Confidence 6666888885
No 126
>KOG4547|consensus
Probab=83.80 E-value=12 Score=39.55 Aligned_cols=108 Identities=10% Similarity=0.061 Sum_probs=75.6
Q ss_pred eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEE---EC-CeEEEEcCCCCceeEecCCCCC
Q psy2153 27 RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCG---YK-NKIHVVDPKSLKSFDAHPRRES 102 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g---~g-nkI~VIn~~Tlksf~~~~~~~~ 102 (325)
.+..|..+|.+..|.-.+++. ...+.=|....+|.+.+ .++++||- .+ .+|..|+.++.+.+..-.....
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~i-----t~~~st~~h~~~v~~~~-~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~ 145 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEI-----TAKLSTDKHYGNVNEIL-DAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP 145 (541)
T ss_pred EEEeecCCccEEEEEecCCeE-----EEEEecCCCCCcceeee-cccccCceEecCCceeEEEEecccceeeeeeccCCC
Confidence 466788999999998655431 12334344447787754 35566652 22 4599999999865544444446
Q ss_pred ceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 103 QVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 103 ~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.+..++.+++ +=+....+.+|.+||.+|.|.++.+-=-
T Consensus 146 ~~~sl~is~D-~~~l~~as~~ik~~~~~~kevv~~ftgh 183 (541)
T KOG4547|consen 146 LVSSLCISPD-GKILLTASRQIKVLDIETKEVVITFTGH 183 (541)
T ss_pred ccceEEEcCC-CCEEEeccceEEEEEccCceEEEEecCC
Confidence 7888888887 5567778999999999999999987643
No 127
>KOG0265|consensus
Probab=83.73 E-value=14 Score=36.59 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCe-EEEEcCCCCc---eeEecCCCCCceeEEEEeCCe--EEEEEeCC
Q psy2153 50 LSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNK-IHVVDPKSLK---SFDAHPRRESQVRQMTWAGDG--VWVSIRLD 121 (325)
Q Consensus 50 ~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnk-I~VIn~~Tlk---sf~~~~~~~~~V~~Ma~~G~G--VWiS~~~s 121 (325)
-+|...++.-+ ..|+-+-... +.|.++.-+| |.+.|++|.+ .|..|. +.|+-|.....| .-.|-+.+
T Consensus 80 ceN~~~lkgHs--gAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~---~~vNs~~p~rrg~~lv~SgsdD 154 (338)
T KOG0265|consen 80 CENFWVLKGHS--GAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHT---SFVNSLDPSRRGPQLVCSGSDD 154 (338)
T ss_pred ccceeeecccc--ceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhcccc---ceeeecCccccCCeEEEecCCC
Confidence 45556666444 6677766663 4566555555 9999999994 344444 556666555444 44566789
Q ss_pred CeEEEEecCccceeeee
Q psy2153 122 STLRMYNAHTYQHLQDV 138 (325)
Q Consensus 122 s~IrL~ha~T~e~LqdI 138 (325)
.++||||..+.+.++.+
T Consensus 155 ~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 155 GTLKLWDIRKKEAIKTF 171 (338)
T ss_pred ceEEEEeecccchhhcc
Confidence 99999999966666655
No 128
>KOG1273|consensus
Probab=83.45 E-value=3.4 Score=41.15 Aligned_cols=74 Identities=15% Similarity=0.306 Sum_probs=63.2
Q ss_pred CCEEEEEECC-eEEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecchhhhh
Q psy2153 72 YNKVWCGYKN-KIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 146 (325)
Q Consensus 72 ~~~LW~g~gn-kI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~ 146 (325)
++-|=.||.| +|.|.|..|. +.|.+|- ..|++++|+.+| --++-+.+-.|.+||-....+|+.|-+.++|.+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~---~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~ 111 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLSAHV---RPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWG 111 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhhccc---cceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccce
Confidence 5677789985 4888898887 7889998 679999999877 566788899999999999999999999988766
Q ss_pred hc
Q psy2153 147 ML 148 (325)
Q Consensus 147 ~l 148 (325)
..
T Consensus 112 ~q 113 (405)
T KOG1273|consen 112 AQ 113 (405)
T ss_pred ee
Confidence 43
No 129
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=83.06 E-value=6.9 Score=40.84 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=46.1
Q ss_pred eEEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcCCCCCcee-eeeeeCCEEEEEE-------CCeEEEEcCCCC
Q psy2153 21 PVHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLGLPHHSVR-SLAAVYNKVWCGY-------KNKIHVVDPKSL 91 (325)
Q Consensus 21 I~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG~~~~PV~-cml~v~~~LW~g~-------gnkI~VIn~~Tl 91 (325)
+.+.+++||++..+|.|+.++...+. .|..+... ...+ .+++ .-++.+++|+++. .+.|+.+|++|-
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~-~~~~---~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG 191 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGD-YKAG---YTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTG 191 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeccccc-cccc---ccccCCcEEECCEEEEeecccccCCCcEEEEEECCCC
Confidence 35678999999999999999975433 58654311 1111 1222 2245689999986 368999999998
Q ss_pred c
Q psy2153 92 K 92 (325)
Q Consensus 92 k 92 (325)
+
T Consensus 192 ~ 192 (527)
T TIGR03075 192 K 192 (527)
T ss_pred c
Confidence 3
No 130
>KOG2445|consensus
Probab=82.72 E-value=12 Score=37.20 Aligned_cols=124 Identities=17% Similarity=0.187 Sum_probs=76.8
Q ss_pred CceeeeEE--eCCeEEEEecCCcEEEEE-cCCCCCCCCCCCeEEEcCCCCCceeeeeeeC---CEEEEEE-CCe-EEEEc
Q psy2153 16 DTALPPVH--VQGRVVCALADGSVAIFR-RGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKVWCGY-KNK-IHVVD 87 (325)
Q Consensus 16 dsVl~I~~--~~~~VfVgLANGtLaVF~-R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~---~~LW~g~-gnk-I~VIn 87 (325)
|-|.|..| ...|+-.+-+|++|.||+ +...|.|........ +. ..|-...-.+ +++-+.| -++ +.|..
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wra--h~--~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRA--HD--GSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEe--cC--CcEEEEEecCccccceEEEEecCCceeeee
Confidence 66777776 477899999999999999 778889987765443 33 3455554443 5555433 354 66655
Q ss_pred CCCCceeEe----------cCCCCCceeEE--EEeCCeEE-EEEeCCCeEEEEecCccceeeeeecchhh
Q psy2153 88 PKSLKSFDA----------HPRRESQVRQM--TWAGDGVW-VSIRLDSTLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 88 ~~Tlksf~~----------~~~~~~~V~~M--a~~G~GVW-iS~~~ss~IrL~ha~T~e~LqdIdIa~~v 144 (325)
-. -++++. -.|+.++|+.+ +....|.= .++..+++||+|.+-.---|..-.+.+..
T Consensus 90 E~-~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 90 EQ-EKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ec-ccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 42 122222 23556777743 33344543 35678999999998765555444444433
No 131
>KOG0639|consensus
Probab=82.55 E-value=1.2 Score=46.61 Aligned_cols=94 Identities=24% Similarity=0.388 Sum_probs=65.4
Q ss_pred CCCCCCC-eEEEcCCCCCceeeee-ee--CCEEEEEEC--CeEEEEcCCC--C-ceeEecCCCCCceeEEEEe--CCeEE
Q psy2153 47 QWDLSKY-HTVTLGLPHHSVRSLA-AV--YNKVWCGYK--NKIHVVDPKS--L-KSFDAHPRRESQVRQMTWA--GDGVW 115 (325)
Q Consensus 47 ~WD~~~~-~~I~LG~~~~PV~cml-~v--~~~LW~g~g--nkI~VIn~~T--l-ksf~~~~~~~~~V~~Ma~~--G~GVW 115 (325)
.||+..| ..|+.--+.+-..|-. .+ +.+|-.+|= +.|-|.|..+ + .+|.-|+|. ++|+..+ |..+|
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG---ascIdis~dGtklW 567 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG---ASCIDISKDGTKLW 567 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC---ceeEEecCCCceee
Confidence 5888876 4455443323334432 22 346644332 4577777654 4 899999965 6677777 77799
Q ss_pred EEEeCCCeEEEEecCccceeeeeecchhh
Q psy2153 116 VSIRLDSTLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 116 iS~~~ss~IrL~ha~T~e~LqdIdIa~~v 144 (325)
+--.+.+||.||-.+.+.||+-|+++-+
T Consensus 568 -TGGlDntvRcWDlregrqlqqhdF~SQI 595 (705)
T KOG0639|consen 568 -TGGLDNTVRCWDLREGRQLQQHDFSSQI 595 (705)
T ss_pred -cCCCccceeehhhhhhhhhhhhhhhhhh
Confidence 7788999999999999999999998754
No 132
>KOG4378|consensus
Probab=82.01 E-value=16 Score=38.53 Aligned_cols=161 Identities=9% Similarity=0.049 Sum_probs=93.0
Q ss_pred CCCCCCCeEE-EcCCCCCceeeeeeeCCEEEEEE---CCeEEEEcCCCC-ceeEecCCCCCceeEEEEeC--CeEEEEEe
Q psy2153 47 QWDLSKYHTV-TLGLPHHSVRSLAAVYNKVWCGY---KNKIHVVDPKSL-KSFDAHPRRESQVRQMTWAG--DGVWVSIR 119 (325)
Q Consensus 47 ~WD~~~~~~I-~LG~~~~PV~cml~v~~~LW~g~---gnkI~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G--~GVWiS~~ 119 (325)
.||++...++ .|-.+.+-|+||..-..-=+.|+ |+.|.|.+++|. +.-+...+.+..|+++-.+. .-.-.+..
T Consensus 105 iwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as 184 (673)
T KOG4378|consen 105 IWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS 184 (673)
T ss_pred ehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeec
Confidence 4888854332 34445678999887765445544 467999999998 44444445567777776653 34666778
Q ss_pred CCCeEEEEecCccceeeeeecchhhhhhccc--ccccccceeeccccccccccCccccCCCccccccccccccceeeeec
Q psy2153 120 LDSTLRMYNAHTYQHLQDVDIEPYVSKMLGM--YTFCSCVTIRTLLAETIISPFGWYANNPADILESFTVCQSHLLCIAS 197 (325)
Q Consensus 120 ~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~ 197 (325)
...+|.|||..........+=++. ..-.. +.....--+.++|-|-=|.-+-+.+.. ...|++-
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~Hs--AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~-------------s~~~l~y 249 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHS--APCRGICFSPSNEALLVSVGYDKKINIYDIRSQA-------------STDRLTY 249 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhcc--CCcCcceecCCccceEEEecccceEEEeeccccc-------------ccceeee
Confidence 899999999999887766654331 11100 111111123334444322222222222 2222211
Q ss_pred cCCCCCCCcceeEEEEEEeeCCeeeEeCCCCcc
Q psy2153 198 VPGTGKLGFSFVRITALLISSSRLWIGTASGKA 230 (325)
Q Consensus 198 vp~~~~~~~~~~riTsLl~~~~~LWiGTs~G~~ 230 (325)
. .++.-.++.-|.-.|-+|++.|.+
T Consensus 250 ---~-----~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 250 ---S-----HPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred ---c-----CCcceeeecCCceEEEeecCCceE
Confidence 0 245556777788889999999974
No 133
>KOG0299|consensus
Probab=81.39 E-value=16 Score=37.88 Aligned_cols=133 Identities=16% Similarity=0.192 Sum_probs=89.8
Q ss_pred CCceeeeEEeC--CeEEEEecCCcEEEEEcCC-----------C-----------------------CCCCCCCC-eEEE
Q psy2153 15 LDTALPPVHVQ--GRVVCALADGSVAIFRRGP-----------D-----------------------GQWDLSKY-HTVT 57 (325)
Q Consensus 15 ~dsVl~I~~~~--~~VfVgLANGtLaVF~R~~-----------~-----------------------g~WD~~~~-~~I~ 57 (325)
.++|.++.+.+ +++|++-+|.++.|+.-+. + ..|++... +.|-
T Consensus 244 r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlif 323 (479)
T KOG0299|consen 244 RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIF 323 (479)
T ss_pred ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeee
Confidence 46899988875 4799999999998887543 0 13554322 3343
Q ss_pred cCCCCCceeeeeeeCC-EEEEEECC-eEEEEcCCCCcee----EecCCCCC--------ceeE-EEEeCCeEEEEEeCCC
Q psy2153 58 LGLPHHSVRSLAAVYN-KVWCGYKN-KIHVVDPKSLKSF----DAHPRRES--------QVRQ-MTWAGDGVWVSIRLDS 122 (325)
Q Consensus 58 LG~~~~PV~cml~v~~-~LW~g~gn-kI~VIn~~Tlksf----~~~~~~~~--------~V~~-Ma~~G~GVWiS~~~ss 122 (325)
-|. ...+-|...+++ +.--|+-| .|...+.-.+|.+ .+|.-... =|+. |+.-+..+..+-+.++
T Consensus 324 rg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G 402 (479)
T KOG0299|consen 324 RGG-EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSG 402 (479)
T ss_pred eCC-CCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCC
Confidence 443 346788888864 55556664 4888887777432 34442221 2443 5556888999999999
Q ss_pred eEEEEecCcc----ceeeeeecchhhhhhc
Q psy2153 123 TLRMYNAHTY----QHLQDVDIEPYVSKML 148 (325)
Q Consensus 123 ~IrL~ha~T~----e~LqdIdIa~~v~~~l 148 (325)
-||||-+++- ++|+++-+.-.|+.+-
T Consensus 403 ~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~ 432 (479)
T KOG0299|consen 403 CVRLWKIEDGLRAINLLYSLSLVGFVNSLA 432 (479)
T ss_pred ceEEEEecCCccccceeeecccccEEEEEE
Confidence 9999999875 7888888777766654
No 134
>KOG1034|consensus
Probab=81.06 E-value=16 Score=36.59 Aligned_cols=108 Identities=18% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee----CCEEEE--EECCeEEEEcCCCC---ceeE
Q psy2153 25 QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV----YNKVWC--GYKNKIHVVDPKSL---KSFD 95 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v----~~~LW~--g~gnkI~VIn~~Tl---ksf~ 95 (325)
+-+|||-....++.+|+-..++ |--.-+....-..+.+--+|--.. ++-+-+ |+.+-|+|||..+. +.+.
T Consensus 54 e~~vfatvG~~rvtiy~c~~d~-~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 54 EPQVFATVGGNRVTIYECPGDG-GIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR 132 (385)
T ss_pred CCceEEEeCCcEEEEEEECCcc-ceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee
Confidence 4567777777789999977666 310000011111122223332111 133333 44456999999988 6676
Q ss_pred ecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccceee
Q psy2153 96 AHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 96 ~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
.|-. .|+.+.-.. ...-++.+.+.+|||||.+|..++.
T Consensus 133 ghG~---sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~ 172 (385)
T KOG1034|consen 133 GHGG---SINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVA 172 (385)
T ss_pred ccCc---cchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEE
Confidence 6663 343333222 2366799999999999999988764
No 135
>KOG0273|consensus
Probab=81.01 E-value=21 Score=37.30 Aligned_cols=121 Identities=16% Similarity=0.256 Sum_probs=86.6
Q ss_pred CceeeeEEe-CCeEEEEec-CCcEEEEEcCCCCC-CCCCCC--eEEEcC-CCCCceeeeeeeCC-EEEEEECCeEEEEcC
Q psy2153 16 DTALPPVHV-QGRVVCALA-DGSVAIFRRGPDGQ-WDLSKY--HTVTLG-LPHHSVRSLAAVYN-KVWCGYKNKIHVVDP 88 (325)
Q Consensus 16 dsVl~I~~~-~~~VfVgLA-NGtLaVF~R~~~g~-WD~~~~--~~I~LG-~~~~PV~cml~v~~-~LW~g~gnkI~VIn~ 88 (325)
..|.+|.|. .+.|+++.+ ||||-++.+..++. -|++.+ ...++- +|..|++.-...+. .+||+..+-|.+.|.
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEc
Confidence 478888886 456666655 67999999876553 355443 233442 24467766555554 569999999999999
Q ss_pred CCC---ceeEecCCCCCceeEEEEeCCeEEEE-EeCCCeEEEEecCccceeeeee
Q psy2153 89 KSL---KSFDAHPRRESQVRQMTWAGDGVWVS-IRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 89 ~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS-~~~ss~IrL~ha~T~e~LqdId 139 (325)
+.. +.|.-|+ ..|..++-+.+|=+++ -+.+..|.+|++.|.+..++.-
T Consensus 440 ~~gv~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 440 ESGVPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred cCCceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 998 5566666 6788888886776655 4568999999999999877643
No 136
>KOG0278|consensus
Probab=80.62 E-value=16 Score=35.64 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=75.1
Q ss_pred ceeeeE--EeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCeEEEEcCCCC-
Q psy2153 17 TALPPV--HVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNKIHVVDPKSL- 91 (325)
Q Consensus 17 sVl~I~--~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnkI~VIn~~Tl- 91 (325)
+|-..+ +.++.++-+.-+++|-.+++..+. ..+.|.+- +||++|-+.. +-|=.++|..|...+++++
T Consensus 145 ~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----~v~sL~~~---s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~ 216 (334)
T KOG0278|consen 145 GIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----EVQSLEFN---SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFG 216 (334)
T ss_pred cceeEEEeccCceEEeeccCCceEEEEeccCc-----EEEEEecC---CCCcceeeccCCCEEEEecCceeEEecccccc
Confidence 444444 346666666888888888865542 22344443 6899987774 4577899999999999998
Q ss_pred --ceeEecCCCCCceeE-EEEeCCeEEEEEeCCCeEEEEecCccceeeee
Q psy2153 92 --KSFDAHPRRESQVRQ-MTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 92 --ksf~~~~~~~~~V~~-Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
|++++--+ |+. -..-..+++++--++-.++.||-.|.+-+...
T Consensus 217 ~lKs~k~P~n----V~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 217 LLKSYKMPCN----VESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ceeeccCccc----cccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 66654321 111 11123578888888888999999999877664
No 137
>KOG2321|consensus
Probab=80.22 E-value=8.1 Score=41.19 Aligned_cols=78 Identities=9% Similarity=0.186 Sum_probs=54.9
Q ss_pred eeeeeeC---CEEEEEECCeEEEEcCCCC---ceeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeeee
Q psy2153 66 RSLAAVY---NKVWCGYKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 66 ~cml~v~---~~LW~g~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
|.|.... |-+-+|+|+.||=||.+-. ..|+... ..++++-.. -.|+-.+-...+.+..||..+.+....+
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccccccccccccc---ccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 4444443 5566799999999998876 6777665 333332222 2456555566999999999999999999
Q ss_pred ecchhhhh
Q psy2153 139 DIEPYVSK 146 (325)
Q Consensus 139 dIa~~v~~ 146 (325)
|++..|..
T Consensus 214 ~~~~~v~s 221 (703)
T KOG2321|consen 214 DAASSVNS 221 (703)
T ss_pred ecccccCC
Confidence 99876544
No 138
>KOG0319|consensus
Probab=80.12 E-value=12 Score=40.80 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=74.7
Q ss_pred ceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEE-EcCCCCCceeeeeeeC-CEEEE-EECCe-EEEEcCCCC-
Q psy2153 17 TALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAVY-NKVWC-GYKNK-IHVVDPKSL- 91 (325)
Q Consensus 17 sVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I-~LG~~~~PV~cml~v~-~~LW~-g~gnk-I~VIn~~Tl- 91 (325)
-|.|..+.+|.=+++++. ++|++ ..|++++-..+ .|..-..-|=|.-.-. |++-+ ++|++ |.|.+-++.
T Consensus 465 dIN~Vaia~ndkLiAT~S-----qDkta-KiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS 538 (775)
T KOG0319|consen 465 DINCVAIAPNDKLIATGS-----QDKTA-KIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS 538 (775)
T ss_pred cccceEecCCCceEEecc-----cccce-eeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce
Confidence 355666666655555554 34544 57999865443 2322123455544443 55555 45555 777666665
Q ss_pred --ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 92 --KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 92 --ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
|.|+-|.. ...+.--...+--.||.-.++.|+||+.+|-++++.+|--.
T Consensus 539 ClkT~eGH~~--aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 539 CLKTFEGHTS--AVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred eeeeecCccc--eeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence 99998883 22233223344577899999999999999999999999754
No 139
>KOG0296|consensus
Probab=79.62 E-value=8.1 Score=38.98 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=54.9
Q ss_pred CCCCCCccceeeCCCceeeeEEeC-CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEE
Q psy2153 2 EYPHPTPYPLNKILDTALPPVHVQ-GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCG 78 (325)
Q Consensus 2 ~~~~~~~L~~IkL~dsVl~I~~~~-~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g 78 (325)
.+.++++.+....+++|+.|++.. .++|.+.+||+|..|+-.. |+ -+..-.|. +.+|-++.... +.|--+
T Consensus 314 D~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRt-G~-----l~~~y~GH-~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 314 DLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDART-GQ-----LKFTYTGH-QMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeeccc-cc-----eEEEEecC-chheeEEEEcCCCcEEEEe
Confidence 367899999999999999999998 8999999999999998433 22 23344565 58999988775 344444
Q ss_pred EC
Q psy2153 79 YK 80 (325)
Q Consensus 79 ~g 80 (325)
+.
T Consensus 387 s~ 388 (399)
T KOG0296|consen 387 SD 388 (399)
T ss_pred cC
Confidence 44
No 140
>KOG2114|consensus
Probab=79.43 E-value=34 Score=38.10 Aligned_cols=115 Identities=10% Similarity=0.126 Sum_probs=76.3
Q ss_pred eCCeEEEEecCCcEEEEEcCCCCCCCCC-CCeEEEcCCCCCceeeeeeeCC---EEEEEECCeEEEEcCCCC-ceeEecC
Q psy2153 24 VQGRVVCALADGSVAIFRRGPDGQWDLS-KYHTVTLGLPHHSVRSLAAVYN---KVWCGYKNKIHVVDPKSL-KSFDAHP 98 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~~g~WD~~-~~~~I~LG~~~~PV~cml~v~~---~LW~g~gnkI~VIn~~Tl-ksf~~~~ 98 (325)
....+.+|.+||.|.-|+=+- .-|-. ......-|. .||+.|..-.+ .|+++..++|.+.+.+.. -...++.
T Consensus 136 ~l~~Iv~Gf~nG~V~~~~GDi--~RDrgsr~~~~~~~~--~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld 211 (933)
T KOG2114|consen 136 DLKTIVCGFTNGLVICYKGDI--LRDRGSRQDYSHRGK--EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLD 211 (933)
T ss_pred cccEEEEEecCcEEEEEcCcc--hhccccceeeeccCC--CCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeec
Confidence 356899999999999997321 11211 223334454 89999977753 379999997666665522 2344455
Q ss_pred CCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 99 RRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 99 ~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
..+..++|-.-+ +.+ =+-+..++.|.+|++...++...+++...
T Consensus 212 ~~G~~lnCss~~~~t~-qfIca~~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 212 NNGISLNCSSFSDGTY-QFICAGSEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred cCCccceeeecCCCCc-cEEEecCceEEEEcCCCcceeeeecCCCe
Confidence 555667765554 222 14567788899999999999999987653
No 141
>KOG0279|consensus
Probab=79.39 E-value=64 Score=31.81 Aligned_cols=160 Identities=16% Similarity=0.201 Sum_probs=98.8
Q ss_pred CCCCCCCeEEEcCCC--CCceeeeeeeCC--E-EEE-EECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EE
Q psy2153 47 QWDLSKYHTVTLGLP--HHSVRSLAAVYN--K-VWC-GYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VW 115 (325)
Q Consensus 47 ~WD~~~~~~I~LG~~--~~PV~cml~v~~--~-LW~-g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VW 115 (325)
.||.-.....+++.. ..=|.|.-.+.+ . .-+ ++.++ |.|.|..+. +.|-.|+ ..|+.|+.+.+| +=
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~---~~v~t~~vSpDGslc 207 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS---GYVNTVTVSPDGSLC 207 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc---ccEEEEEECCCCCEE
Confidence 466655555555542 245788777754 2 233 44455 899998888 4555554 889999999887 55
Q ss_pred EEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceeeccccccccccCc-cccCCCccccccccccccceee
Q psy2153 116 VSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFG-WYANNPADILESFTVCQSHLLC 194 (325)
Q Consensus 116 iS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~f~~~~~~~~c 194 (325)
.|--.++.+.|||-...++|+.++=...|+.+- .+|-. |-+..-+.-|+.|++ ..-.|
T Consensus 208 asGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~-------------------fspnrywL~~at~~sIkIwdl--~~~~~ 266 (315)
T KOG0279|consen 208 ASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC-------------------FSPNRYWLCAATATSIKIWDL--ESKAV 266 (315)
T ss_pred ecCCCCceEEEEEccCCceeEeccCCCeEeeEE-------------------ecCCceeEeeccCCceEEEec--cchhh
Confidence 566679999999999999999998776665543 23333 433333344666654 12234
Q ss_pred eecc--CCCCC-CCcceeEEEEEEee--CCeeeEeCCCCcc
Q psy2153 195 IASV--PGTGK-LGFSFVRITALLIS--SSRLWIGTASGKA 230 (325)
Q Consensus 195 i~~v--p~~~~-~~~~~~riTsLl~~--~~~LWiGTs~G~~ 230 (325)
+..+ .+.+. .-....+-++|--+ ...|+-|-..|++
T Consensus 267 v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~i 307 (315)
T KOG0279|consen 267 VEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVI 307 (315)
T ss_pred hhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcE
Confidence 4443 22222 11124555566555 4568888888774
No 142
>KOG0641|consensus
Probab=79.33 E-value=63 Score=31.23 Aligned_cols=121 Identities=12% Similarity=0.163 Sum_probs=73.2
Q ss_pred CceeeeEEe-CCeEEEEecCC-cEEEEEcCCCCCCCCCCC-eEEEcCCCCCceeeeeeeC-----CEEEEEE--C-CeEE
Q psy2153 16 DTALPPVHV-QGRVVCALADG-SVAIFRRGPDGQWDLSKY-HTVTLGLPHHSVRSLAAVY-----NKVWCGY--K-NKIH 84 (325)
Q Consensus 16 dsVl~I~~~-~~~VfVgLANG-tLaVF~R~~~g~WD~~~~-~~I~LG~~~~PV~cml~v~-----~~LW~g~--g-nkI~ 84 (325)
.+|.|..+. .+.+.+.=+|- ++-|.+-+++.. ++..+ --+..-. .-||-|..++ +.+-++- | .+||
T Consensus 90 gsiyc~~ws~~geliatgsndk~ik~l~fn~dt~-~~~g~dle~nmhd--gtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 90 GSIYCTAWSPCGELIATGSNDKTIKVLPFNADTC-NATGHDLEFNMHD--GTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred ccEEEEEecCccCeEEecCCCceEEEEecccccc-cccCcceeeeecC--CceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 455555554 34444444444 455555555532 22322 1233333 5699999986 4565533 3 5699
Q ss_pred EEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 85 VVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 85 VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
+-|-.+.+.|.+-+..-..|-.+..=..-.+.|-+.+-+||.||-.--.+...+|
T Consensus 167 ~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~ 221 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD 221 (350)
T ss_pred EeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc
Confidence 9998888777765544456655544445677788889999999976555554444
No 143
>KOG0303|consensus
Probab=79.31 E-value=17 Score=37.26 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=74.9
Q ss_pred CceeeeEEe--CCeEEEEecC-CcEEEEEcCCCCC-CCCCCCeEEEcCCCCCceeeeeeeCCE--------------EEE
Q psy2153 16 DTALPPVHV--QGRVVCALAD-GSVAIFRRGPDGQ-WDLSKYHTVTLGLPHHSVRSLAAVYNK--------------VWC 77 (325)
Q Consensus 16 dsVl~I~~~--~~~VfVgLAN-GtLaVF~R~~~g~-WD~~~~~~I~LG~~~~PV~cml~v~~~--------------LW~ 77 (325)
++|+.+.+. +++|.|+-++ -++.|++--..|. -++. .||..|..+..+ +=+
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-----------epvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-----------EPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-----------cceEEEeecceeEEEEeecccchhhHhhc
Confidence 478888874 5667776555 4788887544442 2333 344444443222 126
Q ss_pred EECCeEEEEcCCCCce-eEe-cCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeee
Q psy2153 78 GYKNKIHVVDPKSLKS-FDA-HPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 78 g~gnkI~VIn~~Tlks-f~~-~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdI 138 (325)
||.|.|++.|..|... ++. |+ ..|..|...-+| ..++...+-.||+||..+.+.++|=
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hp---d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHP---DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred cCCceEEEEeccCCceeeecCCC---CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 8889999999999832 222 44 788888887555 6777888999999999999999998
No 144
>KOG0316|consensus
Probab=79.23 E-value=15 Score=35.58 Aligned_cols=115 Identities=20% Similarity=0.260 Sum_probs=73.8
Q ss_pred CceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc--CCCCCceeeeeee-CCEEEEEECC-e-EEEEcC
Q psy2153 16 DTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GLPHHSVRSLAAV-YNKVWCGYKN-K-IHVVDP 88 (325)
Q Consensus 16 dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L--G~~~~PV~cml~v-~~~LW~g~gn-k-I~VIn~ 88 (325)
.+|....|. .|+++..=.+-+| ..|++..-.+|.- |. ..-|.-.... ++.-.|+||. + |++.|.
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtv--------rLWNp~rg~liktYsgh-G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTV--------RLWNPLRGALIKTYSGH-GHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceE--------EeecccccceeeeecCC-CceeeeccccccccccccCCCCceEEEEEc
Confidence 577777774 3333333333233 3566555444433 22 2345444333 5677888884 3 999999
Q ss_pred CCCc---eeEecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecC--ccceeeeeecch
Q psy2153 89 KSLK---SFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAH--TYQHLQDVDIEP 142 (325)
Q Consensus 89 ~Tlk---sf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~--T~e~LqdIdIa~ 142 (325)
.|.| .|.-|- .+|+.+.-. ..-|-.|-+-++++|+||-. ++|++|-+|-+.
T Consensus 89 ~TGkv~Rr~rgH~---aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 89 NTGKVDRRFRGHL---AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ccCeeeeeccccc---ceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9984 555554 788877765 44588888999999999975 567888887653
No 145
>KOG0649|consensus
Probab=79.06 E-value=27 Score=33.99 Aligned_cols=136 Identities=15% Similarity=0.101 Sum_probs=86.2
Q ss_pred CCCCccceeeCCCce----------eeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeE-EEc-CCCCCceeeeeee
Q psy2153 4 PHPTPYPLNKILDTA----------LPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT-VTL-GLPHHSVRSLAAV 71 (325)
Q Consensus 4 ~~~~~L~~IkL~dsV----------l~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~-I~L-G~~~~PV~cml~v 71 (325)
-|.|.||+++.|--+ +.+.-.+|.+|.|=.| =.+|. ||++.-+. ..+ |. ..=|.|++.-
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD--~~~y~------~dlE~G~i~r~~rGH-tDYvH~vv~R 165 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD--GVIYQ------VDLEDGRIQREYRGH-TDYVHSVVGR 165 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCC--eEEEE------EEecCCEEEEEEcCC-cceeeeeeec
Confidence 578999999998644 2222246666654444 44453 55554322 222 32 2345665442
Q ss_pred --CCEEEEEECC-eEEEEcCCCCc---eeEecCCCC---CceeE--EEEeCCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 72 --YNKVWCGYKN-KIHVVDPKSLK---SFDAHPRRE---SQVRQ--MTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 72 --~~~LW~g~gn-kI~VIn~~Tlk---sf~~~~~~~---~~V~~--Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
..++.-|..+ .+-|.|++|-| ..+....++ -.+.. |+.+++-=|+-+-.++.+-|||-.+-|.-+.|-|
T Consensus 166 ~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 166 NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEec
Confidence 3567766664 38888888873 233222111 01222 6777778899999999999999999999999999
Q ss_pred chhhhhhc
Q psy2153 141 EPYVSKML 148 (325)
Q Consensus 141 a~~v~~~l 148 (325)
-.+|+...
T Consensus 246 pa~v~~v~ 253 (325)
T KOG0649|consen 246 PARVHLVD 253 (325)
T ss_pred ccceeEee
Confidence 98877655
No 146
>KOG0313|consensus
Probab=78.84 E-value=22 Score=36.25 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=92.7
Q ss_pred CCCCCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-C-C---EEEE
Q psy2153 3 YPHPTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-Y-N---KVWC 77 (325)
Q Consensus 3 ~~~~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~-~---~LW~ 77 (325)
|+-+++|+.+.=+|=|-++.-....+|-|.=||++.|.++... ....-.|. ..||+...-+ . . .+-.
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk-------~~~~~~Gh-t~~ik~v~~v~~n~~~~~fvs 164 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK-------SIKTIVGH-TGPIKSVAWVIKNSSSCLFVS 164 (423)
T ss_pred cCCCCccccccchhhhhhhcccCceEEEeecCCeeEEEecCCc-------eEEEEecC-CcceeeeEEEecCCccceEEE
Confidence 6778999999999988888888999999999999988875321 12344464 5899855444 2 2 3666
Q ss_pred EECCe---EEEEcCCCC--ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEe--cCccceeeeeecch
Q psy2153 78 GYKNK---IHVVDPKSL--KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYN--AHTYQHLQDVDIEP 142 (325)
Q Consensus 78 g~gnk---I~VIn~~Tl--ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~h--a~T~e~LqdIdIa~ 142 (325)
|+.++ .+.+|...+ +...+..-.+..|.++.+.++| .++|-+-+.+|.+|+ .+.-..+.+++-..
T Consensus 165 as~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 165 ASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred ecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhh
Confidence 77787 566666655 3333333445778888876555 888999999999999 33344566666533
No 147
>KOG3914|consensus
Probab=78.59 E-value=14 Score=37.47 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=78.1
Q ss_pred CccceeeCCCceeeeEE--eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CE-EEEEEC-C
Q psy2153 7 TPYPLNKILDTALPPVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NK-VWCGYK-N 81 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~--~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~-LW~g~g-n 81 (325)
|.+..-.+|-.-..|.. .+.++.|+..-|++.-|+-.....|- ....+|.- +=|.-+.... ++ +--+-+ .
T Consensus 99 kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~----~~~~lGhv-Sml~dVavS~D~~~IitaDRDE 173 (390)
T KOG3914|consen 99 KLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR----CEPILGHV-SMLLDVAVSPDDQFIITADRDE 173 (390)
T ss_pred eeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccC----cchhhhhh-hhhheeeecCCCCEEEEecCCc
Confidence 33444444443333333 45678888888887777643322222 22344541 1222222222 22 222222 2
Q ss_pred eEEEEcC-CCC--ceeEe-cCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 82 KIHVVDP-KSL--KSFDA-HPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 82 kI~VIn~-~Tl--ksf~~-~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
+|-|... .+. ++|-. |. .-|+.|+......-+|-..|.+||+||..+.+.|-..|.++.+...+
T Consensus 174 kIRvs~ypa~f~IesfclGH~---eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~ 241 (390)
T KOG3914|consen 174 KIRVSRYPATFVIESFCLGHK---EFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPIL 241 (390)
T ss_pred eEEEEecCcccchhhhccccH---hheeeeeeccCceeeecCCCCcEEEEecccCCcccccchhHhhhhcc
Confidence 3555442 222 55655 44 56778888766766699999999999999999999999998776666
No 148
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=78.30 E-value=32 Score=37.87 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=70.3
Q ss_pred EEeCCeEEEEecCCcEEEEEcCCCC-CCCCCCCeEEEcC------------C-CCCce-----eeeeeeCCEEEEEEC-C
Q psy2153 22 VHVQGRVVCALADGSVAIFRRGPDG-QWDLSKYHTVTLG------------L-PHHSV-----RSLAAVYNKVWCGYK-N 81 (325)
Q Consensus 22 ~~~~~~VfVgLANGtLaVF~R~~~g-~WD~~~~~~I~LG------------~-~~~PV-----~cml~v~~~LW~g~g-n 81 (325)
+..+++||++..+|.|.-++...+. .|..+...-+.-+ . |...+ ..-..-+++|+.+.. .
T Consensus 191 lvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 191 LKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 3468999999999999999976533 4854432111100 0 00000 001123468888765 5
Q ss_pred eEEEEcCCCCce---eEec------C------CCCCcee-EEEEeCCeEEEEEe---------CCCeEEEEecCccceee
Q psy2153 82 KIHVVDPKSLKS---FDAH------P------RRESQVR-QMTWAGDGVWVSIR---------LDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 82 kI~VIn~~Tlks---f~~~------~------~~~~~V~-~Ma~~G~GVWiS~~---------~ss~IrL~ha~T~e~Lq 136 (325)
+++.||++|.|. |... . ...-.++ .-+..++-|.+..+ -+..|+-||++|.|.+-
T Consensus 271 ~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred eEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEee
Confidence 699999999842 2110 0 0000111 12334445666532 26889999999999999
Q ss_pred eeecc
Q psy2153 137 DVDIE 141 (325)
Q Consensus 137 dIdIa 141 (325)
.+|..
T Consensus 351 ~~~~g 355 (764)
T TIGR03074 351 AWDPG 355 (764)
T ss_pred EEecC
Confidence 99975
No 149
>KOG4714|consensus
Probab=77.80 E-value=14 Score=36.11 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=60.8
Q ss_pred eeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCceeeeeeeC---CEEEEEECCe-EEEEcCCCC--
Q psy2153 19 LPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHSVRSLAAVY---NKVWCGYKNK-IHVVDPKSL-- 91 (325)
Q Consensus 19 l~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~PV~cml~v~---~~LW~g~gnk-I~VIn~~Tl-- 91 (325)
.|+++..+.+ +++|-..+=.-++---|++++.+++.... ....|+++.... ..+-||.++. |-+++.+..
T Consensus 138 ~~~~~~~~~i---~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~ 214 (319)
T KOG4714|consen 138 RKICRHGNSI---LSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM 214 (319)
T ss_pred cceeecccEE---ecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc
Confidence 3445544443 34554444333333358888876654322 112376766654 4578888866 788887776
Q ss_pred --ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCc
Q psy2153 92 --KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 92 --ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T 131 (325)
..+.+|..+-.+|-.--..++.++ .++++..|--||+.|
T Consensus 215 p~S~l~ahk~~i~eV~FHpk~p~~Lf-t~sedGslw~wdas~ 255 (319)
T KOG4714|consen 215 PVSLLKAHKAEIWEVHFHPKNPEHLF-TCSEDGSLWHWDAST 255 (319)
T ss_pred hHHHHHHhhhhhhheeccCCCchhee-EecCCCcEEEEcCCC
Confidence 233455443344433333344455 556677777899887
No 150
>KOG0647|consensus
Probab=77.45 E-value=36 Score=33.85 Aligned_cols=127 Identities=13% Similarity=0.237 Sum_probs=85.6
Q ss_pred CCCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCC-CCceeeeeeeC---CEEEEEEC
Q psy2153 5 HPTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLP-HHSVRSLAAVY---NKVWCGYK 80 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~-~~PV~cml~v~---~~LW~g~g 80 (325)
..+++.++.||+.|.++-....-+.||+|+-.|+||.-..+- ...+.+ -+| .--+||+.... +.+-.+-.
T Consensus 146 ~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~----te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 146 SSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPP----TEFKRI--ESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCc----chhhhh--cCcccceeeEEEEEecCCceEeeeec
Confidence 457899999999999999999999999999999999853211 111111 111 13467766553 45666777
Q ss_pred CeEEEEcCCCC---c--eeEecCCCCC------ceeEEEEe-CCeEEEEEeCCCeEEEEecCccceeee
Q psy2153 81 NKIHVVDPKSL---K--SFDAHPRRES------QVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 81 nkI~VIn~~Tl---k--sf~~~~~~~~------~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e~Lqd 137 (325)
+++.|-+...- + +|..|.+.+. .|+.++-. -.|..+..-.+++...||......|.+
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 88777655442 2 5677875432 12222222 356788888999999999988877665
No 151
>KOG1332|consensus
Probab=77.40 E-value=9.2 Score=37.01 Aligned_cols=123 Identities=22% Similarity=0.296 Sum_probs=75.2
Q ss_pred CCCcccee-eCCCceeeeEEeCC----eEEEEecCCcEEEEEcCCCCCCCCCCC-eEEEcCCCC---Ccee---ee----
Q psy2153 5 HPTPYPLN-KILDTALPPVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKY-HTVTLGLPH---HSVR---SL---- 68 (325)
Q Consensus 5 ~~~~L~~I-kL~dsVl~I~~~~~----~VfVgLANGtLaVF~R~~~g~WD~~~~-~~I~LG~~~---~PV~---cm---- 68 (325)
.|+.+++- -...+|.|+....+ -+++|-+||+|-|++-+.+|.|+...- ..-.+|... .|=+ .+
T Consensus 91 ~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~ 170 (299)
T KOG1332|consen 91 RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQG 170 (299)
T ss_pred chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccC
Confidence 34444333 34568999988544 589999999999999888889986654 334455410 1100 00
Q ss_pred --eeeCCEEEEEECCeEEEEcCCCC-----ceeEecCCCCCceeEEEEeCC-----eEEEEEeCCCeEEEEecC
Q psy2153 69 --AAVYNKVWCGYKNKIHVVDPKSL-----KSFDAHPRRESQVRQMTWAGD-----GVWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 69 --l~v~~~LW~g~gnkI~VIn~~Tl-----ksf~~~~~~~~~V~~Ma~~G~-----GVWiS~~~ss~IrL~ha~ 130 (325)
..+..-+=.||-|.|.|..-.+- +.|+.|.| =|+..|++.. ---.|++.+.++-+|-..
T Consensus 171 ~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d---wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 171 PAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD---WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred cccccceeeccCCccceeeeecCCcchhhhhhhhhcch---hhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 00111234578888888887763 56788873 3444444321 123478888898888665
No 152
>KOG0307|consensus
Probab=77.31 E-value=4.3 Score=45.70 Aligned_cols=117 Identities=17% Similarity=0.252 Sum_probs=81.4
Q ss_pred eeeCCCceeeeEEeC--CeEEEEecC-CcEEEEEcCCCCCCCCCCC-eEEEcCCCCCceeeeeee-------CCEEEEEE
Q psy2153 11 LNKILDTALPPVHVQ--GRVVCALAD-GSVAIFRRGPDGQWDLSKY-HTVTLGLPHHSVRSLAAV-------YNKVWCGY 79 (325)
Q Consensus 11 ~IkL~dsVl~I~~~~--~~VfVgLAN-GtLaVF~R~~~g~WD~~~~-~~I~LG~~~~PV~cml~v-------~~~LW~g~ 79 (325)
....++-|.||-+.. .+||++-.. |+.+| ||+... .+|.+.. .+=|+++.+ ..+||+++
T Consensus 157 ~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i--------WDlr~~~pii~ls~--~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 157 SQAPPSEIKCLSWNRKVSHILASGSPSGRAVI--------WDLRKKKPIIKLSD--TPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred CCCCcccceEeccchhhhHHhhccCCCCCcee--------ccccCCCccccccc--CCCccceeeeeeCCCCceeeeeec
Confidence 455678888888853 467776544 34333 666654 5678876 444443333 26899999
Q ss_pred CCe----EEEEcC----CCCceeEecCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 80 KNK----IHVVDP----KSLKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 80 gnk----I~VIn~----~Tlksf~~~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
++. |...|. ..+|.++.|+ +-|..|.|...+ .-+|...|..|.+|+.+|.|.|.++-.
T Consensus 227 ~dd~~PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred CCCCCceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 965 444442 2237888888 668888887555 778999999999999999999988865
No 153
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=77.23 E-value=34 Score=30.71 Aligned_cols=98 Identities=15% Similarity=0.279 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC---CeEEEEcCCCCceeEecCCCCCceeEEEE
Q psy2153 35 GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK---NKIHVVDPKSLKSFDAHPRRESQVRQMTW 109 (325)
Q Consensus 35 GtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g---nkI~VIn~~Tlksf~~~~~~~~~V~~Ma~ 109 (325)
|+..+|.-+..+ .+...+.+.. ..||..+.-- ++++-+.+| .+|.+.|.+.-+.++... ..++.+.+
T Consensus 37 ~~~~l~~~~~~~----~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~---~~~n~i~w 108 (194)
T PF08662_consen 37 GEFELFYLNEKN----IPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT---QPRNTISW 108 (194)
T ss_pred eeEEEEEEecCC----CccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC---CCceEEEE
Confidence 456666643222 2335677754 2578887544 456555544 358888887444444433 56778999
Q ss_pred eCCeEEEEEeC----CCeEEEEecCccceeeeeec
Q psy2153 110 AGDGVWVSIRL----DSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 110 ~G~GVWiS~~~----ss~IrL~ha~T~e~LqdIdI 140 (325)
+..|=++++.. .+.|++||..+.+.+.+.+-
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~ 143 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH 143 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence 98886666643 45799999999998877653
No 154
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.64 E-value=6.3 Score=25.76 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=29.2
Q ss_pred eCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 110 AGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 110 ~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.|.-+|++-+.+.+|-++|+.+.+.+..+++..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 356799999999999999999999999999853
No 155
>KOG0264|consensus
Probab=76.42 E-value=22 Score=36.49 Aligned_cols=106 Identities=14% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCeEEEEecCCcEEEEEcCCCCCCC-CCCCeEEEcCCCCCceeee--eeeCCEEEEEEC--CeEEEEcCCC--C---cee
Q psy2153 25 QGRVVCALADGSVAIFRRGPDGQWD-LSKYHTVTLGLPHHSVRSL--AAVYNKVWCGYK--NKIHVVDPKS--L---KSF 94 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~~g~WD-~~~~~~I~LG~~~~PV~cm--l~v~~~LW~g~g--nkI~VIn~~T--l---ksf 94 (325)
++++..|=.|+++++++-++.+.-+ ...++.+-=|. ...|.-. -+.+..|.++++ +++.+.|+++ . ++-
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeecC-CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 4567778888889998877655421 12233333333 2444332 334678888777 5599999995 3 566
Q ss_pred EecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccce
Q psy2153 95 DAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
.+|. ..|.|++.. +..+-.+.+.+.+|+|||-..+.+
T Consensus 269 ~ah~---~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~ 307 (422)
T KOG0264|consen 269 KAHS---AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK 307 (422)
T ss_pred cccC---CceeEEEeCCCCCceEEeccCCCcEEEeechhccc
Confidence 7777 778888876 445666777899999999988776
No 156
>KOG0286|consensus
Probab=76.29 E-value=85 Score=31.25 Aligned_cols=133 Identities=10% Similarity=0.060 Sum_probs=89.7
Q ss_pred CccceeeCCCc-eeeeEEeCCeEEEEe--cCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEECCe
Q psy2153 7 TPYPLNKILDT-ALPPVHVQGRVVCAL--ADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYKNK 82 (325)
Q Consensus 7 ~~L~~IkL~ds-Vl~I~~~~~~VfVgL--ANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~gnk 82 (325)
.+.|.|+||.+ |+.-.|....-|||. -|..-.||+-.....-...+....-.|. ..=+.|.-.++ +++--|+|+.
T Consensus 88 nK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gH-tgylScC~f~dD~~ilT~SGD~ 166 (343)
T KOG0286|consen 88 NKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGH-TGYLSCCRFLDDNHILTGSGDM 166 (343)
T ss_pred cceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCc-cceeEEEEEcCCCceEecCCCc
Confidence 46789999974 777788765555543 4668899985422111111222222232 35578887776 5888999988
Q ss_pred -EEEEcCCCCceeEecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 83 -IHVVDPKSLKSFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 83 -I~VIn~~Tlksf~~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
.-..|.++.+..........-|-.+..+. ..-++|-.-+.+-+|||.....+.|.|--
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g 227 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG 227 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc
Confidence 88889999854433333336666666654 45889999999999999999999998754
No 157
>KOG1408|consensus
Probab=76.06 E-value=25 Score=38.72 Aligned_cols=127 Identities=18% Similarity=0.186 Sum_probs=82.3
Q ss_pred CCccceeeC-CCceeeeEEeCC----eEEEEecCCcEEEEEcC---CCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEE
Q psy2153 6 PTPYPLNKI-LDTALPPVHVQG----RVVCALADGSVAIFRRG---PDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKV 75 (325)
Q Consensus 6 ~~~L~~IkL-~dsVl~I~~~~~----~VfVgLANGtLaVF~R~---~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~L 75 (325)
|-+++.+.= .++|+++++..+ +..-.=|| +...|+-+ .+|. +-.-++-+++. .-+.-|.+=. +.+
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGAD-ksimFr~~qk~~~g~--~f~r~t~t~~k--tTlYDm~Vdp~~k~v 611 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD-KSIMFRVNQKASSGR--LFPRHTQTLSK--TTLYDMAVDPTSKLV 611 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCc-hhhheehhccccCce--ecccccccccc--ceEEEeeeCCCcceE
Confidence 445555544 468999998533 22222233 45555532 2332 11112233443 3466664433 566
Q ss_pred EEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeee
Q psy2153 76 WCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 76 W~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~Lqd 137 (325)
-.+|+++ |-|+|.++. |+|.-.++.+...-.+..+..|+|++.+- +-+|.+||-.+.|+...
T Consensus 612 ~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 612 VTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 7899987 999999998 78888777766666677788999999985 77899999999998643
No 158
>KOG0640|consensus
Probab=75.97 E-value=8.9 Score=38.29 Aligned_cols=122 Identities=12% Similarity=0.241 Sum_probs=82.9
Q ss_pred CceeeeEEe-CCeEEE-EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC-CeEEEEcCCC
Q psy2153 16 DTALPPVHV-QGRVVC-ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKS 90 (325)
Q Consensus 16 dsVl~I~~~-~~~VfV-gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g-nkI~VIn~~T 90 (325)
|.|.++.++ ...+++ |-.|++|-.|+-.... --+-.++=....||||+... ++-|-+|.. +-+.+.|.+|
T Consensus 173 devn~l~FHPre~ILiS~srD~tvKlFDfsK~s-----aKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T 247 (430)
T KOG0640|consen 173 DEVNDLDFHPRETILISGSRDNTVKLFDFSKTS-----AKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT 247 (430)
T ss_pred CcccceeecchhheEEeccCCCeEEEEecccHH-----HHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccc
Confidence 567777765 344554 4556788888743321 11122222224799998877 467788877 4488889999
Q ss_pred CceeEe-cCCC--CCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 91 LKSFDA-HPRR--ESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 91 lksf~~-~~~~--~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.+.|.- .++. ...|++.-.+..| +++.-+.+.-|+|||-.+-+++..|-=++
T Consensus 248 ~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH 303 (430)
T KOG0640|consen 248 YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH 303 (430)
T ss_pred eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc
Confidence 887743 3322 2567777776555 99999999999999999999988776554
No 159
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=75.42 E-value=70 Score=31.00 Aligned_cols=122 Identities=17% Similarity=0.197 Sum_probs=72.9
Q ss_pred ceeeeEEe--CCeEEE-EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEEC--CeEEEEcCC
Q psy2153 17 TALPPVHV--QGRVVC-ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK--NKIHVVDPK 89 (325)
Q Consensus 17 sVl~I~~~--~~~VfV-gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~g--nkI~VIn~~ 89 (325)
-..++... .++||| -|....|.+|+.+.++. .+.....+.+..-..| |-|.... ..+|+.++ |.|.+++..
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GP-Rh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTG-KLTPVDSIKVPPGSGP-RHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS--TEEEEEEEECSTTSSE-EEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCc-eEEEeeccccccCCCC-cEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 45566665 346887 56667899999765431 1333344444321144 5666664 48999986 779998876
Q ss_pred --CC-----ceeEecC---CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecC----ccceeeeeec
Q psy2153 90 --SL-----KSFDAHP---RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAH----TYQHLQDVDI 140 (325)
Q Consensus 90 --Tl-----ksf~~~~---~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~----T~e~LqdIdI 140 (325)
+. +.....+ .....-..++.+ |..+|+|-+...+|-+|+.. +++.++.+..
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~ 289 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT 289 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC
Confidence 22 1222221 122356677777 56699999999999999982 4455555554
No 160
>PHA02713 hypothetical protein; Provisional
Probab=75.18 E-value=26 Score=36.79 Aligned_cols=92 Identities=9% Similarity=0.045 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC--------CeEEEEcCCC-CceeEecCC-CCCcee
Q psy2153 36 SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK--------NKIHVVDPKS-LKSFDAHPR-RESQVR 105 (325)
Q Consensus 36 tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g--------nkI~VIn~~T-lksf~~~~~-~~~~V~ 105 (325)
++-.|+-.. +.|..-.+ +..+. . -.++..+++++|+-.| +.|...||++ .+.-.+.+= ....--
T Consensus 433 ~ve~YDP~t-d~W~~v~~--m~~~r--~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 433 KVIRYDTVN-NIWETLPN--FWTGT--I-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred eEEEECCCC-CeEeecCC--CCccc--c-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 477787544 46853332 11121 1 1257888999998655 2478899998 443333221 223345
Q ss_pred EEEEeCCeEEEEEeCCC--eEEEEecCccc
Q psy2153 106 QMTWAGDGVWVSIRLDS--TLRMYNAHTYQ 133 (325)
Q Consensus 106 ~Ma~~G~GVWiS~~~ss--~IrL~ha~T~e 133 (325)
.+++.++-||+.--.++ ++..||..|.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 67778888888655455 56777766654
No 161
>KOG0299|consensus
Probab=75.13 E-value=12 Score=38.69 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=61.5
Q ss_pred EEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEECCe------------E-EEEcCCC-Cc----eeEecC-
Q psy2153 40 FRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGYKNK------------I-HVVDPKS-LK----SFDAHP- 98 (325)
Q Consensus 40 F~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~gnk------------I-~VIn~~T-lk----sf~~~~- 98 (325)
|++.++..-..+......++..+.|+.||..-.+ .++-++.+. + |++.... +| .++-+.
T Consensus 120 ~r~~a~~v~~~~s~~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~ 199 (479)
T KOG0299|consen 120 RRLVADKVQAPESSDFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRK 199 (479)
T ss_pred ehhhhhhccccccccceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccc
Confidence 3333444333333345566666689999877754 455444443 2 2333211 11 112221
Q ss_pred CCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeee
Q psy2153 99 RRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 99 ~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdI 138 (325)
.....|.+|+++.+|=|+++.. +..|.+|+..|++|++.+
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~ 240 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVF 240 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcc
Confidence 3457888999999999999886 777889999999999994
No 162
>KOG2394|consensus
Probab=74.71 E-value=19 Score=38.28 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCceeeeEEe---CCeEEEEecCCcEEEEEcC
Q psy2153 15 LDTALPPVHV---QGRVVCALADGSVAIFRRG 43 (325)
Q Consensus 15 ~dsVl~I~~~---~~~VfVgLANGtLaVF~R~ 43 (325)
+++|+||.++ ++.+.|+-++|.|.+|+.+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~ 250 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE 250 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecc
Confidence 4899999996 6789999999999999753
No 163
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=74.10 E-value=68 Score=29.00 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=64.0
Q ss_pred CCCccceeeCCCceeeeEE-eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc--CC-CCCceeeeeee-CCEEEEEE
Q psy2153 5 HPTPYPLNKILDTALPPVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL--GL-PHHSVRSLAAV-YNKVWCGY 79 (325)
Q Consensus 5 ~~~~L~~IkL~dsVl~I~~-~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L--G~-~~~PV~cml~v-~~~LW~g~ 79 (325)
+.+....+.+++++-.... .++++|++-.+| +++|+. ..|.+. ..... +. +..-...+..- +++||++.
T Consensus 30 ~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~-~~g~~~----~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~ 103 (246)
T PF08450_consen 30 DTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDP-DTGKVT----VLADLPDGGVPFNRPNDVAVDPDGNLYVTD 103 (246)
T ss_dssp TTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEET-TTTEEE----EEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred CCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEec-CCCcEE----EEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence 3444555778886666666 588898887754 555543 223221 22333 32 11222223332 47899987
Q ss_pred C----------CeEEEEcCCCCceeEecCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecC
Q psy2153 80 K----------NKIHVVDPKSLKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 80 g----------nkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~ 130 (325)
. .+|+.+++. .+ .....+.....+-|+.+.+| +|++-+....|.-|+..
T Consensus 104 ~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~ 164 (246)
T PF08450_consen 104 SGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLD 164 (246)
T ss_dssp ECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEE
T ss_pred cCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeecccccceeEEEecc
Confidence 5 469999998 42 11111123445567776443 66666666666666654
No 164
>KOG1900|consensus
Probab=73.83 E-value=37 Score=39.36 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=99.0
Q ss_pred CCceeeeEE-eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCCce
Q psy2153 15 LDTALPPVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLKS 93 (325)
Q Consensus 15 ~dsVl~I~~-~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tlks 93 (325)
+-+|.||.| .+||+|.|-+||.|.=+.=++...|--...+.+.++. +-+..|++- ++ +-
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~--s~ls~lvPs-------------~~-----~~ 237 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTK--SVLSSLVPS-------------LL-----SV 237 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCch--hHHHHhhhh-------------hh-----cC
Confidence 348999997 5789999999997643333455569877677777765 223233221 00 11
Q ss_pred eEecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecCc--cceeeeeecchh--hhhhcccccccccceeecccccccc
Q psy2153 94 FDAHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAHT--YQHLQDVDIEPY--VSKMLGMYTFCSCVTIRTLLAETII 168 (325)
Q Consensus 94 f~~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~T--~e~LqdIdIa~~--v~~~l~~~~~~~~~~~~~~~~~~~~ 168 (325)
+ ..+...|.+|+.+. -+|-++.+..++|+.||..+ ......+.++.. ..+++
T Consensus 238 ~---~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~-------------------- 294 (1311)
T KOG1900|consen 238 P---GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQAL-------------------- 294 (1311)
T ss_pred C---CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhh--------------------
Confidence 1 22346788888873 46888999999999999987 445666665532 12222
Q ss_pred ccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCeeeEeCCCCcc
Q psy2153 169 SPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSRLWIGTASGKA 230 (325)
Q Consensus 169 ~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~LWiGTs~G~~ 230 (325)
+..+|.+--. ..=|.++-+-.....+.+.+.|.+.+.=+|+.-|+.|-.
T Consensus 295 -----~~~~~~~~s~--------f~~IvsI~~l~~~es~~l~LvA~ts~GvRlYfs~s~~r~ 343 (1311)
T KOG1900|consen 295 -----SLKNPLDDSV--------FFSIVSISPLSASESNDLHLVAITSTGVRLYFSTSSGRQ 343 (1311)
T ss_pred -----hccccCCCcc--------cceeEEecccCcccccceeEEEEecCCeEEEEeccCCCc
Confidence 1112222222 222333322222334678999999999999999998843
No 165
>KOG0282|consensus
Probab=73.33 E-value=4.2 Score=42.18 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=54.1
Q ss_pred CCEEEEEEC--CeEEEEcCCCC----ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 72 YNKVWCGYK--NKIHVVDPKSL----KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 72 ~~~LW~g~g--nkI~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
..+|...++ ++|++.|.-.- +.|.-|. ..|+.+..+..| =++|.+-+.+|+|||+||.+.++.+....
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~---k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR---KPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcch---hhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC
Confidence 467777666 66999987663 6777777 668877777666 67888899999999999999999988763
No 166
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.27 E-value=79 Score=36.11 Aligned_cols=68 Identities=12% Similarity=0.206 Sum_probs=46.1
Q ss_pred CCEEEEEEC--CeEEEEcCCCCc--eeEe-----------cCCCCCceeEEEEeCC-eEEEEEeCCCeEEEEecCcccee
Q psy2153 72 YNKVWCGYK--NKIHVVDPKSLK--SFDA-----------HPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHL 135 (325)
Q Consensus 72 ~~~LW~g~g--nkI~VIn~~Tlk--sf~~-----------~~~~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~ha~T~e~L 135 (325)
++.||++.. ++|.++|+++.. .+.- ..........|+.+.+ .+||+=.....||+||..|.+..
T Consensus 814 dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~~ 893 (1057)
T PLN02919 814 DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEAA 893 (1057)
T ss_pred CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCccc
Confidence 468998775 569999998762 1111 0111235667777644 38999999999999999998764
Q ss_pred eeee
Q psy2153 136 QDVD 139 (325)
Q Consensus 136 qdId 139 (325)
+-+.
T Consensus 894 ~~~~ 897 (1057)
T PLN02919 894 EILT 897 (1057)
T ss_pred eeEe
Confidence 3333
No 167
>KOG0268|consensus
Probab=73.19 E-value=20 Score=36.43 Aligned_cols=188 Identities=17% Similarity=0.212 Sum_probs=109.5
Q ss_pred ccceeeCCCceeeeEEe-CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEE--CCeEE
Q psy2153 8 PYPLNKILDTALPPVHV-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGY--KNKIH 84 (325)
Q Consensus 8 ~L~~IkL~dsVl~I~~~-~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~--gnkI~ 84 (325)
++|.|--+..++.|-|. .+.+|+.... .+.||+-..+ .+-..++.|.+.-+.-..-+++..+-++| .++|+
T Consensus 140 p~~tilg~s~~~gIdh~~~~~~FaTcGe-~i~IWD~~R~-----~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 140 PLHTILGKSVYLGIDHHRKNSVFATCGE-QIDIWDEQRD-----NPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred cceeeeccccccccccccccccccccCc-eeeecccccC-----CccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 77777777788888774 4556665432 4555542221 23355777774433333455666665555 57799
Q ss_pred EEcCCCC---ceeEecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceee
Q psy2153 85 VVDPKSL---KSFDAHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIR 160 (325)
Q Consensus 85 VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~ 160 (325)
+.|+.+- |.....-+ -+.++|.. ..++++-..+..|+.||..-+++-..+-- .+|+..|
T Consensus 214 LyD~R~~~Pl~KVi~~mR----TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~------------ 276 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMR----TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVM------------ 276 (433)
T ss_pred EEecccCCccceeeeecc----ccceecCccccceeeccccccceehhhhhhcccchhhc-ccceeEE------------
Confidence 9999887 33322221 12355553 45899999999999999988875433221 2233444
Q ss_pred ccccccccccCc--cccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCeeeE--eCCCCc
Q psy2153 161 TLLAETIISPFG--WYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSRLWI--GTASGK 229 (325)
Q Consensus 161 ~~~~~~~~~~~~--~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~LWi--GTs~G~ 229 (325)
|.--+|+| +-+.+=.+.|+.|.+.+.|-+=|.+-- ..-+|.+..-+.|.=+| |...|.
T Consensus 277 ----dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-------RMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 277 ----DVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-------RMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred ----EeccCCCcchhccccccceEEEeecCCCcchhhhhHh-------hhheeeEEEEeccccEEEecCCCcc
Confidence 33345555 223344568899988777665333222 25677777777665444 444443
No 168
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=72.73 E-value=98 Score=30.69 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=75.7
Q ss_pred CccceeeCCCceeeeEE--eCCeEEEEec---CCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeee-eeeCCEEEEEE-
Q psy2153 7 TPYPLNKILDTALPPVH--VQGRVVCALA---DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL-AAVYNKVWCGY- 79 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~--~~~~VfVgLA---NGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cm-l~v~~~LW~g~- 79 (325)
+.++.+.+......+.. .++++||+-+ |+++.+++.... ..-+.+..|. .|..-. ...+.++|...
T Consensus 107 ~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~-----~~~~~~~vG~--~P~~~a~~p~g~~vyv~~~ 179 (381)
T COG3391 107 TVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN-----KVTATIPVGN--TPTGVAVDPDGNKVYVTNS 179 (381)
T ss_pred ceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC-----eEEEEEecCC--CcceEEECCCCCeEEEEec
Confidence 34555555555555555 3669999999 578888875432 1223477887 673222 22246799998
Q ss_pred -CCeEEEEcCCCCceeEecCC-----CCCceeEEEE--eCCeEEEEEeCC--CeEEEEecCccceeee
Q psy2153 80 -KNKIHVVDPKSLKSFDAHPR-----RESQVRQMTW--AGDGVWVSIRLD--STLRMYNAHTYQHLQD 137 (325)
Q Consensus 80 -gnkI~VIn~~Tlksf~~~~~-----~~~~V~~Ma~--~G~GVWiS~~~s--s~IrL~ha~T~e~Lqd 137 (325)
.|.|.+||+.+.+... .+. ....-...+. +|..++++...+ ..+...|..+.+....
T Consensus 180 ~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~ 246 (381)
T COG3391 180 DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT 246 (381)
T ss_pred CCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence 7889999988885443 221 1111223333 566688888887 4677777776665544
No 169
>KOG2445|consensus
Probab=72.48 E-value=53 Score=32.85 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=89.8
Q ss_pred CCCCCCccceee--------CCCceeeeEEeCC----eEEEEecCC------cEEEEEcCCCC-CCCCCCCeEEEcCCCC
Q psy2153 2 EYPHPTPYPLNK--------ILDTALPPVHVQG----RVVCALADG------SVAIFRRGPDG-QWDLSKYHTVTLGLPH 62 (325)
Q Consensus 2 ~~~~~~~L~~Ik--------L~dsVl~I~~~~~----~VfVgLANG------tLaVF~R~~~g-~WD~~~~~~I~LG~~~ 62 (325)
+.-.|++-|+|+ -+-+-.|+-.... ..+|.=+|- ++.||+++.++ .|-- .=+|-.-.
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k----va~L~d~~ 223 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK----VAELPDHT 223 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee----ehhcCCCC
Confidence 344577778887 2334556665433 244444444 89999998877 5631 11222223
Q ss_pred CceeeeeeeC------CEEEEEECCeEEEEcCCCC---------------cee-----EecCCCCCceeEEEEeCCe-EE
Q psy2153 63 HSVRSLAAVY------NKVWCGYKNKIHVVDPKSL---------------KSF-----DAHPRRESQVRQMTWAGDG-VW 115 (325)
Q Consensus 63 ~PV~cml~v~------~~LW~g~gnkI~VIn~~Tl---------------ksf-----~~~~~~~~~V~~Ma~~G~G-VW 115 (325)
.||+.+.... -.|=.||++-|.|++.+.. ..| ..+.+...+|=.|.+.=.| +-
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiL 303 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTIL 303 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEE
Confidence 6899886663 2345688886888776642 111 2233444677777776444 56
Q ss_pred EEEeCCCeEEEEecC---ccceeeeeecchhhhhhc
Q psy2153 116 VSIRLDSTLRMYNAH---TYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 116 iS~~~ss~IrL~ha~---T~e~LqdIdIa~~v~~~l 148 (325)
.|...++.||||-+. -++++-.++.+++|.|.-
T Consensus 304 sStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~ 339 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPD 339 (361)
T ss_pred eecCCCceeeehhhhhhhhheeeeEEeccCCCCCcc
Confidence 677789999999874 466888888888887764
No 170
>KOG0270|consensus
Probab=72.29 E-value=30 Score=35.79 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCceeeeEE---eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC---CEEEEEECCe-EEEEc
Q psy2153 15 LDTALPPVH---VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKVWCGYKNK-IHVVD 87 (325)
Q Consensus 15 ~dsVl~I~~---~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~---~~LW~g~gnk-I~VIn 87 (325)
-+-|-.+.. .++..|+++-||+|.-|+-.+.| ++.+.+.-.. .||.++..-. +.|=-++..+ |++.+
T Consensus 329 ~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~----~~vwt~~AHd--~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG----KPVWTLKAHD--DEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred ccceEEEEecCCCceeEEEecCCceEEeeecCCCC----CceeEEEecc--CCcceEEecCCCCcceeeccccceEEEEe
Confidence 334444443 57789999999999999954444 3445666655 6888876543 4555566655 66665
Q ss_pred CCCC--ceeEecCCCCCceeEEEEe-CCeEEEEEeCCC-eEEEEecCccc
Q psy2153 88 PKSL--KSFDAHPRRESQVRQMTWA-GDGVWVSIRLDS-TLRMYNAHTYQ 133 (325)
Q Consensus 88 ~~Tl--ksf~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss-~IrL~ha~T~e 133 (325)
..-- +..-.|........|++.. ..--|+++.... .+|+||..|..
T Consensus 403 ~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 403 FDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 4332 2222222222223344433 223456666543 59999988764
No 171
>KOG0277|consensus
Probab=72.22 E-value=14 Score=35.94 Aligned_cols=117 Identities=15% Similarity=0.290 Sum_probs=67.9
Q ss_pred ceeeeEEeCCeEEEEe-------cCCcEEEEEcC-CCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-CeEEEEc
Q psy2153 17 TALPPVHVQGRVVCAL-------ADGSVAIFRRG-PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVD 87 (325)
Q Consensus 17 sVl~I~~~~~~VfVgL-------ANGtLaVF~R~-~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-nkI~VIn 87 (325)
+|.-==+.+||+-||. .||+|.|-+-+ +.| +........-+.---|+=--..++.|.++|| +++.++|
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~g---i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d 89 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKG---IQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFD 89 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCC---eEEEEeeecccceeEeeecCCCcceEEEEecCceEEEec
Confidence 4444445788887775 48999999964 222 1111111222200011111233688999999 4588888
Q ss_pred CCCC-----ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 88 PKSL-----KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 88 ~~Tl-----ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
.++ +.|..|. ..|..+-+. .....++-+=+.+|+||+..-.+-+|.++=
T Consensus 90 -~~~~s~Pi~~~kEH~---~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g 145 (311)
T KOG0277|consen 90 -LTMPSKPIHKFKEHK---REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG 145 (311)
T ss_pred -cCCCCcchhHHHhhh---hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence 444 3444454 444443332 123444447799999999999999988664
No 172
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=70.78 E-value=65 Score=31.23 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=77.9
Q ss_pred ceeeeEE--eCCeEEEEe-cCCcEEEEEcCCCCCCCCCCC-eEEEc---CC-----CCCceeeeeee--CCEEEEEEC--
Q psy2153 17 TALPPVH--VQGRVVCAL-ADGSVAIFRRGPDGQWDLSKY-HTVTL---GL-----PHHSVRSLAAV--YNKVWCGYK-- 80 (325)
Q Consensus 17 sVl~I~~--~~~~VfVgL-ANGtLaVF~R~~~g~WD~~~~-~~I~L---G~-----~~~PV~cml~v--~~~LW~g~g-- 80 (325)
..-.|.. ...++||+- .+|++.+|+.+.+|. +... ..+.. |. ...-..++..- ++.||+..-
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~--l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~ 165 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS--LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA 165 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE--EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc--cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCC
Confidence 3334444 356788886 588999999887663 1111 12211 11 00113444444 357888654
Q ss_pred CeEEEEcCCCCc-ee----EecCCCCCceeEEEEeCC--eEEEEEeCCCeEEEEecC----ccceeeeeecchh
Q psy2153 81 NKIHVVDPKSLK-SF----DAHPRRESQVRQMTWAGD--GVWVSIRLDSTLRMYNAH----TYQHLQDVDIEPY 143 (325)
Q Consensus 81 nkI~VIn~~Tlk-sf----~~~~~~~~~V~~Ma~~G~--GVWiS~~~ss~IrL~ha~----T~e~LqdIdIa~~ 143 (325)
++|++++.+..+ .+ ...-...+.-+||+...+ -+|+....++.|.+|+.. +++.+|.+..-+.
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~ 239 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPE 239 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccc
Confidence 778888765541 12 234456788999999744 599999999999999988 6778888876653
No 173
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=70.60 E-value=51 Score=33.36 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=31.6
Q ss_pred CCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 101 ESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 101 ~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
..+|+.++.+..|---.-..+..|-+.|-..-..+..-+++.
T Consensus 86 ~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~ 127 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRE 127 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG
T ss_pred CCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccc
Confidence 588999999988843333366799999998888888888887
No 174
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=70.43 E-value=36 Score=32.88 Aligned_cols=114 Identities=13% Similarity=0.176 Sum_probs=61.7
Q ss_pred CCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceee---eeeeCCEEEEEEC--
Q psy2153 6 PTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRS---LAAVYNKVWCGYK-- 80 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~c---ml~v~~~LW~g~g-- 80 (325)
++.+.+++.+.-==-|++.+.+++++-.+.+|...+ +. +++..+.|.+-.-..||+. |-.+++.|||-..
T Consensus 120 l~~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~d--P~---~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~t 194 (264)
T PF05096_consen 120 LKKIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLD--PE---TFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQT 194 (264)
T ss_dssp TEEEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE---TT---T-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTS
T ss_pred ceEEEEEecCCcceEEEcCCCEEEEECCccceEEEC--Cc---ccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCC
Confidence 334444444432223446666777665554555544 33 3455566666433366655 6667899999766
Q ss_pred CeEEEEcCCCCc---eeEe-------c--C---CCCCceeEEEEe--CCeEEEEEeCCCeE
Q psy2153 81 NKIHVVDPKSLK---SFDA-------H--P---RRESQVRQMTWA--GDGVWVSIRLDSTL 124 (325)
Q Consensus 81 nkI~VIn~~Tlk---sf~~-------~--~---~~~~~V~~Ma~~--G~GVWiS~~~ss~I 124 (325)
|.|.+|||+|.+ .++. . . ..+...+-+|+. ++.+|++-++=+.+
T Consensus 195 d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~l 255 (264)
T PF05096_consen 195 DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKL 255 (264)
T ss_dssp SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEE
T ss_pred CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCce
Confidence 779999999983 2221 1 1 124677889994 66799887775553
No 175
>KOG1517|consensus
Probab=69.49 E-value=41 Score=38.62 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=79.8
Q ss_pred CCccceeeCCC----ceeeeEEeCC----eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeee--------
Q psy2153 6 PTPYPLNKILD----TALPPVHVQG----RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLA-------- 69 (325)
Q Consensus 6 ~~~L~~IkL~d----sVl~I~~~~~----~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml-------- 69 (325)
-+.|...+..+ -|+.|.+.++ -+.+|-.||.|-||+.-+++ | ++++.++== .++..|+
T Consensus 1096 ~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~-~--~~~eLVTaw---~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1096 GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK-W--KKPELVTAW---SSLSDQLPGARGTGL 1169 (1387)
T ss_pred CceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc-c--CCceeEEee---ccccccCccCCCCCe
Confidence 34444444433 5778887654 48999999999999866654 5 455555431 1222222
Q ss_pred e-----eCCEEEEEECCe-EEEEcCCCC-ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccce
Q psy2153 70 A-----VYNKVWCGYKNK-IHVVDPKSL-KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 70 ~-----v~~~LW~g~gnk-I~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
+ -.+.|.++-+.+ |-|.|++.- +--++--.++..|+.|..+ +.++-++--.|+.||+||...-..
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 2 247888877655 888888776 2223333456778877664 446888888999999999876544
No 176
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.33 E-value=35 Score=35.14 Aligned_cols=107 Identities=19% Similarity=0.364 Sum_probs=58.0
Q ss_pred eeeeEEeCC-eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCC-C---c
Q psy2153 18 ALPPVHVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKS-L---K 92 (325)
Q Consensus 18 Vl~I~~~~~-~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~T-l---k 92 (325)
+..|.|..+ +.++-..+|.-.+|. +. .| .-+..-.-.+-+|++ +|+.-|++... . |
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt--~~-~~---------------r~k~~G~g~~~vw~~-~n~yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYT--AL-AW---------------RNKAFGSGLSFVWSS-RNRYAVLESSSTIKIYK 95 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEE--TT-TT---------------EEEEEEE-SEEEE-T-SSEEEEE-TTS-EEEEE
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEE--cc-CC---------------cccccCceeEEEEec-CccEEEEECCCeEEEEE
Confidence 567777533 344447888888887 11 11 111112223568999 88888888633 2 3
Q ss_pred eeEecC----CCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhh
Q psy2153 93 SFDAHP----RRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 93 sf~~~~----~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
.|+-.. .....+..|-. |-.+..+.+..|.+||.++.+.+.+||+.+ |..+
T Consensus 96 n~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~-vk~V 150 (443)
T PF04053_consen 96 NFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRIDVSA-VKYV 150 (443)
T ss_dssp TTEE-TT-----SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEESS-E--EEE
T ss_pred cCccccceEEcCCcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEEecCC-CcEE
Confidence 443322 11223444443 667778888899999999999999999986 4433
No 177
>KOG2055|consensus
Probab=67.86 E-value=59 Score=34.00 Aligned_cols=116 Identities=18% Similarity=0.257 Sum_probs=65.7
Q ss_pred ccceeeCCC-ceeeeEEeCCeEEEEecCCcEEEEEcCCC---CCCCCCCCeEEEcCCCC----CceeeeeeeC-CEE--E
Q psy2153 8 PYPLNKILD-TALPPVHVQGRVVCALADGSVAIFRRGPD---GQWDLSKYHTVTLGLPH----HSVRSLAAVY-NKV--W 76 (325)
Q Consensus 8 ~L~~IkL~d-sVl~I~~~~~~VfVgLANGtLaVF~R~~~---g~WD~~~~~~I~LG~~~----~PV~cml~v~-~~L--W 76 (325)
.+++|.|.+ ++.+..+.. ||+=.||.-..- =+||++.-+..+|+.|. ..++..-+.. +.. -
T Consensus 249 ~lqS~~l~~fPi~~a~f~p--------~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~ 320 (514)
T KOG2055|consen 249 KLQSIHLEKFPIQKAEFAP--------NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAI 320 (514)
T ss_pred hheeeeeccCccceeeecC--------CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEE
Confidence 567777775 555555543 565222221110 15888888887776542 2334433333 333 3
Q ss_pred EEECCeEEEEcCCCC---ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceee
Q psy2153 77 CGYKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 77 ~g~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
+|-.+-|+++.++|+ .+|.. +..|+.++.+ |.-+|++...+ .|.+||..+-.++.
T Consensus 321 ~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~fsSdsk~l~~~~~~G-eV~v~nl~~~~~~~ 380 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKELITSFKI----EGVVSDFTFSSDSKELLASGGTG-EVYVWNLRQNSCLH 380 (514)
T ss_pred cccCceEEeehhhhhhhhheeee----ccEEeeEEEecCCcEEEEEcCCc-eEEEEecCCcceEE
Confidence 344455999999998 45544 2445544444 44577555554 88888877764443
No 178
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=67.38 E-value=15 Score=23.35 Aligned_cols=35 Identities=6% Similarity=0.016 Sum_probs=26.7
Q ss_pred CccceeeCC-CceeeeEEeC--CeEEEEecCCcEEEEE
Q psy2153 7 TPYPLNKIL-DTALPPVHVQ--GRVVCALADGSVAIFR 41 (325)
Q Consensus 7 ~~L~~IkL~-dsVl~I~~~~--~~VfVgLANGtLaVF~ 41 (325)
|+++.++=. ++|.+|.+.. +.+..|-.||+|.+|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 445555555 6899999874 5788888889999985
No 179
>KOG0269|consensus
Probab=67.33 E-value=12 Score=41.06 Aligned_cols=59 Identities=15% Similarity=0.217 Sum_probs=40.7
Q ss_pred CCeEEEEecCCcEEEEEcCCCCCCCCCCCeE--EEcCCCCCceeeeeeeCCEEEEEECCe---EEEEcCCCC
Q psy2153 25 QGRVVCALADGSVAIFRRGPDGQWDLSKYHT--VTLGLPHHSVRSLAAVYNKVWCGYKNK---IHVVDPKSL 91 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~--I~LG~~~~PV~cml~v~~~LW~g~gnk---I~VIn~~Tl 91 (325)
+++.+.+--+|.|-.| |+..|.. ..+---..||-|+-...++.|.|.|++ |.|.+..+.
T Consensus 189 ~~~F~s~~dsG~lqlW--------DlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLW--------DLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred CceEEEecCCceEEEe--------eccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 4455555566666554 4444422 344333489999999999999998865 999998865
No 180
>KOG4283|consensus
Probab=67.11 E-value=19 Score=35.77 Aligned_cols=34 Identities=29% Similarity=0.506 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCeEEEEecCccceeeeeecchhh
Q psy2153 111 GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 111 G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v 144 (325)
..|.+++-+=+-+|++||+.|+|-.-+++.+..|
T Consensus 113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~V 146 (397)
T KOG4283|consen 113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKV 146 (397)
T ss_pred cCceeecccccceEEEeecccceeeEEeecCcee
Confidence 5789999999999999999999999999987654
No 181
>KOG0315|consensus
Probab=67.09 E-value=1.3e+02 Score=29.49 Aligned_cols=84 Identities=14% Similarity=0.209 Sum_probs=58.0
Q ss_pred CCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECC-eEEEEcCCCC-ceeEecCCCCCceeEEEEeCCe-EEEEEeCCC
Q psy2153 48 WDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKN-KIHVVDPKSL-KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDS 122 (325)
Q Consensus 48 WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gn-kI~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss 122 (325)
||+.++.+=.+=...+||++++... .+|..+-++ .|.|.|..+. ..-+.-++.+..|+.+.+.-+| --++..+.+
T Consensus 110 WdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG 189 (311)
T KOG0315|consen 110 WDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKG 189 (311)
T ss_pred EeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCc
Confidence 5655543322222238999988886 467777764 4999998877 5556667777888877776555 334777889
Q ss_pred eEEEEecCc
Q psy2153 123 TLRMYNAHT 131 (325)
Q Consensus 123 ~IrL~ha~T 131 (325)
..++|+-.+
T Consensus 190 ~cyvW~l~~ 198 (311)
T KOG0315|consen 190 NCYVWRLLN 198 (311)
T ss_pred cEEEEEccC
Confidence 999998877
No 182
>KOG0640|consensus
Probab=67.03 E-value=1.4e+02 Score=30.22 Aligned_cols=175 Identities=12% Similarity=0.138 Sum_probs=99.5
Q ss_pred ceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEE-EEC-CeEEEEcCCCC
Q psy2153 17 TALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWC-GYK-NKIHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~-g~g-nkI~VIn~~Tl 91 (325)
+|.||-++ ..+++||..--++-+|+-+.--..-..+|.. + ....|++.-.-. ++||+ |+. +.|.+.|-.+.
T Consensus 218 ~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~---q-ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~ 293 (430)
T KOG0640|consen 218 PVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDD---Q-HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN 293 (430)
T ss_pred eeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccc---c-cccceeEEEecCCccEEEEeccCCcEEeeccccH
Confidence 67777765 5689999999999999865432221111111 0 013465554443 67876 333 45999988887
Q ss_pred ---cee-EecCCCCCceeEEEEeCCeEEE-EEeCCCeEEEEecCccceeeeeecchhhhhh---c-ccccccccceeecc
Q psy2153 92 ---KSF-DAHPRRESQVRQMTWAGDGVWV-SIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM---L-GMYTFCSCVTIRTL 162 (325)
Q Consensus 92 ---ksf-~~~~~~~~~V~~Ma~~G~GVWi-S~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~---l-~~~~~~~~~~~~~~ 162 (325)
.+| ++|. .+.|...+-...|=+| |--.+|+++||...|.+.|++.-=+-..-++ . ..|| ...|+. ..
T Consensus 294 rCv~t~~~AH~--gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFN-htEdyV-l~ 369 (430)
T KOG0640|consen 294 RCVRTIGNAHG--GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFN-HTEDYV-LF 369 (430)
T ss_pred HHHHHHHhhcC--CceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhc-CccceE-Ec
Confidence 455 3444 3455544444444333 5556999999999999999988655221111 1 1111 112211 11
Q ss_pred ccccccccCccccCCCcccccccc-ccccceeeeeccCC
Q psy2153 163 LAETIISPFGWYANNPADILESFT-VCQSHLLCIASVPG 200 (325)
Q Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~f~-~~~~~~~ci~~vp~ 200 (325)
--+.-.+.-.||+.+-... .-+. .++.-++||-+-|.
T Consensus 370 pDEas~slcsWdaRtadr~-~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 370 PDEASNSLCSWDARTADRV-ALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred cccccCceeeccccchhhh-hhcccCCCCCceEEEeCCC
Confidence 1122233344877664432 3333 37888899988885
No 183
>KOG0275|consensus
Probab=66.55 E-value=79 Score=31.97 Aligned_cols=111 Identities=16% Similarity=0.292 Sum_probs=75.2
Q ss_pred CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC----CEEEEEECCeEEEEcCCCC--ceeEecC
Q psy2153 25 QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY----NKVWCGYKNKIHVVDPKSL--KSFDAHP 98 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~----~~LW~g~gnkI~VIn~~Tl--ksf~~~~ 98 (325)
.+++.-+-+||++-|++-.....- + ..-++|. ..||....... --+-|--.|.|||+|..-- ++|....
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~--~--Tfk~~~~-d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGk 434 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECL--S--TFKPLGT-DYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGK 434 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhh--h--hccCCCC-cccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCC
Confidence 457888888999988874332211 1 1112343 57888877664 2466777789999998776 8998776
Q ss_pred CCC-CceeEEEEeCCeEEEEE-eCCCeEEEEecCccceeeeeecc
Q psy2153 99 RRE-SQVRQMTWAGDGVWVSI-RLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 99 ~~~-~~V~~Ma~~G~GVWiS~-~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
++. .-|.+. .+..|=|+-+ -.+..+++|...+.++=....+.
T Consensus 435 REgGdFi~~~-lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 435 REGGDFINAI-LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred ccCCceEEEE-ecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 654 556664 4557878655 56899999999888765555543
No 184
>KOG0772|consensus
Probab=64.17 E-value=70 Score=34.07 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=76.5
Q ss_pred cceeeCCC---ceeeeEEeC--CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCceeeeeee--CCEEEEEEC
Q psy2153 9 YPLNKILD---TALPPVHVQ--GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHSVRSLAAV--YNKVWCGYK 80 (325)
Q Consensus 9 L~~IkL~d---sVl~I~~~~--~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~PV~cml~v--~~~LW~g~g 80 (325)
-|+|+|+. .|+.+.... .|++-|=-|-++-.|+-+. -|...+..-.|-. -.++|+++..- ++++-|.+|
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~g---Mdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQG---MDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccc---ccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 37788885 666666643 3555555555666665321 1222222222211 13778877544 588888888
Q ss_pred Ce-EEEEcCCCCceeEecC------------CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCcc-ceeeeeecch
Q psy2153 81 NK-IHVVDPKSLKSFDAHP------------RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTY-QHLQDVDIEP 142 (325)
Q Consensus 81 nk-I~VIn~~Tlksf~~~~------------~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~-e~LqdIdIa~ 142 (325)
+. ..++|-.-....+... -.-..++|-.|. ..+.+++++.++++|+||.... +++|-|-..+
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 65 7777755542221111 011344444443 4568999999999999998755 4777776543
No 185
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=64.05 E-value=13 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.3
Q ss_pred EEeCCeEEEEecCCcEEEEEcCC
Q psy2153 22 VHVQGRVVCALADGSVAIFRRGP 44 (325)
Q Consensus 22 ~~~~~~VfVgLANGtLaVF~R~~ 44 (325)
...++.||++-.+|.|..++...
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~ 25 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKT 25 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEccc
Confidence 44577999999999999999754
No 186
>KOG0300|consensus
Probab=63.85 E-value=26 Score=35.20 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=62.8
Q ss_pred CCCCCCCC-eEEEc--CCCCCceeeeee-eCCEEEEEECCe-EEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeC
Q psy2153 46 GQWDLSKY-HTVTL--GLPHHSVRSLAA-VYNKVWCGYKNK-IHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRL 120 (325)
Q Consensus 46 g~WD~~~~-~~I~L--G~~~~PV~cml~-v~~~LW~g~gnk-I~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ 120 (325)
..||+.+. +.+.+ |. ...|++... .++++--|+-++ |.|.+.++|++--+.-+.++.++.++++-.+=-|++-.
T Consensus 339 RLWDFReaI~sV~VFQGH-tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPh 417 (481)
T KOG0300|consen 339 RLWDFREAIQSVAVFQGH-TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPH 417 (481)
T ss_pred Eeccchhhcceeeeeccc-ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEecc
Confidence 47998854 44444 43 356777544 478999999988 99999999977666666778999999986675667766
Q ss_pred C-CeEEEEecCc
Q psy2153 121 D-STLRMYNAHT 131 (325)
Q Consensus 121 s-s~IrL~ha~T 131 (325)
+ -.|||||-.-
T Consensus 418 DNRqvRlfDlnG 429 (481)
T KOG0300|consen 418 DNRQVRLFDLNG 429 (481)
T ss_pred CCceEEEEecCC
Confidence 5 4699998654
No 187
>KOG0302|consensus
Probab=63.12 E-value=7.5 Score=39.49 Aligned_cols=53 Identities=25% Similarity=0.577 Sum_probs=43.9
Q ss_pred ECCeEEEEcCCCC------ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccce
Q psy2153 79 YKNKIHVVDPKSL------KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 79 ~gnkI~VIn~~Tl------ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
|.+.||+-.+.+. ..|..|. ..|..+.|+ ..+|+.|++-+.+||+||+....+
T Consensus 232 c~~~I~lw~~~~g~W~vd~~Pf~gH~---~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~ 292 (440)
T KOG0302|consen 232 CVKGIHLWEPSTGSWKVDQRPFTGHT---KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK 292 (440)
T ss_pred cccceEeeeeccCceeecCccccccc---cchhhhccCCccCceEEeeecCceEEEEEecCCCc
Confidence 7778999988886 3566666 678888885 689999999999999999988743
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=62.43 E-value=1.2e+02 Score=27.20 Aligned_cols=122 Identities=11% Similarity=0.202 Sum_probs=74.9
Q ss_pred ccceeeCCC--ceeeeEEeCC-eEEE---EecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEE-E
Q psy2153 8 PYPLNKILD--TALPPVHVQG-RVVC---ALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWC-G 78 (325)
Q Consensus 8 ~L~~IkL~d--sVl~I~~~~~-~VfV---gLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~-g 78 (325)
+...+.|+. +|.++.+..+ .=|+ |-.++++.+|+.. ......++. .++..+.-- +..|-+ |
T Consensus 50 ~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~--------~~~i~~~~~--~~~n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 50 PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK--------GKKIFSFGT--QPRNTISWSPDGRFLVLAG 119 (194)
T ss_pred ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc--------ccEeEeecC--CCceEEEECCCCCEEEEEE
Confidence 345566643 5999988743 2232 3345577777742 334556665 566665433 334433 3
Q ss_pred ECC---eEEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEe-------CCCeEEEEecCccceeeeeecch
Q psy2153 79 YKN---KIHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIR-------LDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 79 ~gn---kI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~-------~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.+| .|.+.|.++.+...... ...++.++++.+|=+++.. .+.-+++||- +.++|.+.+...
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~~~ 190 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPFDE 190 (194)
T ss_pred ccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecchhh
Confidence 344 49999999885443222 2347899999887444433 3667899997 588888887743
No 189
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=62.42 E-value=60 Score=32.85 Aligned_cols=124 Identities=18% Similarity=0.233 Sum_probs=67.4
Q ss_pred ceeeeEEe------CC----eEEEEecCCcEEEEEcC--CCCCCCCCCCeEEEcCCCCCceeeeeee-------------
Q psy2153 17 TALPPVHV------QG----RVVCALADGSVAIFRRG--PDGQWDLSKYHTVTLGLPHHSVRSLAAV------------- 71 (325)
Q Consensus 17 sVl~I~~~------~~----~VfVgLANGtLaVF~R~--~~g~WD~~~~~~I~LG~~~~PV~cml~v------------- 71 (325)
.|++|.+. |+ .+|||..+|++++|.-. ..|.|..+-........ .||..+..+
T Consensus 137 ~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~--~~i~~I~~i~~~~G~~a~At~~ 214 (395)
T PF08596_consen 137 YVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD--SPILSIIPINADTGESALATIS 214 (395)
T ss_dssp -EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS------EEEEEETTT--B-B-BHH
T ss_pred CeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC--CceEEEEEEECCCCCcccCchh
Confidence 67777663 22 69999999999999753 44567544333331111 344433333
Q ss_pred -----------CCEEEEEECCeEEEEcCCCC----ceeEecCC-CCCceeEEE-EeCCeEEEEEeCCCeEEEEecCccce
Q psy2153 72 -----------YNKVWCGYKNKIHVVDPKSL----KSFDAHPR-RESQVRQMT-WAGDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 72 -----------~~~LW~g~gnkI~VIn~~Tl----ksf~~~~~-~~~~V~~Ma-~~G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
++-+-+.+.+.|.|+.+-+. |.|+.+.- ....+..+. ..+..+-+.+..+..+++|--=.++.
T Consensus 215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 12444555677999998776 44422110 001111111 34567888999999999999999999
Q ss_pred eeeeecch
Q psy2153 135 LQDVDIEP 142 (325)
Q Consensus 135 LqdIdIa~ 142 (325)
+.++++-.
T Consensus 295 i~~~~l~~ 302 (395)
T PF08596_consen 295 IKSVSLPP 302 (395)
T ss_dssp EEEEE-SS
T ss_pred hhcccCCC
Confidence 99999963
No 190
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=62.07 E-value=2e+02 Score=32.62 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCCCccceeeCCCceeeeEEeCCe--EEEEecCCcEEEEEcCCCCCCCCCCC
Q psy2153 4 PHPTPYPLNKILDTALPPVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKY 53 (325)
Q Consensus 4 ~~~~~L~~IkL~dsVl~I~~~~~~--VfVgLANGtLaVF~R~~~g~WD~~~~ 53 (325)
|-|=...+|++|++|.++.+..+. +.|-++||+|.+|.-.....|....+
T Consensus 415 PPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~ 466 (928)
T PF04762_consen 415 PPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPP 466 (928)
T ss_pred CchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCc
Confidence 444456899999999999997665 99999999999999766566654444
No 191
>KOG0263|consensus
Probab=61.83 E-value=27 Score=38.03 Aligned_cols=87 Identities=11% Similarity=0.238 Sum_probs=62.5
Q ss_pred CCCCCCCC--eEEEcCCCCCceeeeeeeCCEEEEEEC--Ce-EEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEE
Q psy2153 46 GQWDLSKY--HTVTLGLPHHSVRSLAAVYNKVWCGYK--NK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVS 117 (325)
Q Consensus 46 g~WD~~~~--~~I~LG~~~~PV~cml~v~~~LW~g~g--nk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS 117 (325)
..|..+.. ..|-.|. .+=|.|.....+.=|.+.| ++ |-+.|..+. +-|..|. +.|+.|+.+..|.|++
T Consensus 518 rLWs~d~~~PlRifagh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~---~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHK---GPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeecccCCchhhhccc-ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCC---CceEEEEEcCCCceEe
Confidence 35755543 3344453 4568888888777666555 33 777777666 5677776 7899999999999998
Q ss_pred Ee-CCCeEEEEecCccceee
Q psy2153 118 IR-LDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 118 ~~-~ss~IrL~ha~T~e~Lq 136 (325)
.- .+..|.+||..+.+.+.
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ecccCCcEEEEEcCCCcchh
Confidence 76 48889999999977653
No 192
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=60.97 E-value=1.3e+02 Score=27.20 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=63.5
Q ss_pred Ce-EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeee-eCCEEEEEECCeEEEEcCCCC--ceeEec---C
Q psy2153 26 GR-VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAA-VYNKVWCGYKNKIHVVDPKSL--KSFDAH---P 98 (325)
Q Consensus 26 ~~-VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~-v~~~LW~g~gnkI~VIn~~Tl--ksf~~~---~ 98 (325)
++ .|+-..+|+|..|+.... ....+.++. |.-.... -++++|++.+..+.++|+++. +.+... .
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~------~~~~~~~~~---~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTG------EVEVIDLPG---PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTT------EEEEEESSS---EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred CEEEEEEcCCCEEEEEECCCC------eEEEEecCC---CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence 44 456677888888874332 113345543 6655444 368999999999999998887 333222 2
Q ss_pred CCCCceeEEEEeCCe-EEEEEeCC--------CeEEEEecC
Q psy2153 99 RRESQVRQMTWAGDG-VWVSIRLD--------STLRMYNAH 130 (325)
Q Consensus 99 ~~~~~V~~Ma~~G~G-VWiS~~~s--------s~IrL~ha~ 130 (325)
.+....+.++.+.+| +|++-... +.|..++..
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC
Confidence 256778889998777 99988765 347777777
No 193
>KOG1446|consensus
Probab=60.72 E-value=1.8e+02 Score=28.87 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCCCC---eEEEcCCCCCceeeeeeeCCEEEEEECC-eEEEEcCCCC-----ceeEecCCCCCceeEEEEeCCeEEEE
Q psy2153 47 QWDLSKY---HTVTLGLPHHSVRSLAAVYNKVWCGYKN-KIHVVDPKSL-----KSFDAHPRRESQVRQMTWAGDGVWVS 117 (325)
Q Consensus 47 ~WD~~~~---~~I~LG~~~~PV~cml~v~~~LW~g~gn-kI~VIn~~Tl-----ksf~~~~~~~~~V~~Ma~~G~GVWiS 117 (325)
.||+..+ ..+.+.. .||-..-+-+--.=+|+++ .|.+.|.++. ..|......+.+.+.|.-+.+|=.|=
T Consensus 126 LWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iL 203 (311)
T KOG1446|consen 126 LWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSIL 203 (311)
T ss_pred eeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEE
Confidence 5887744 3355544 5665444433334457776 6999999998 46677766789999999998886655
Q ss_pred Ee-CCCeEEEEecCccceeeeeecchh
Q psy2153 118 IR-LDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 118 ~~-~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
++ +.+.+++.|+.+.+.++.+...+.
T Consensus 204 lsT~~s~~~~lDAf~G~~~~tfs~~~~ 230 (311)
T KOG1446|consen 204 LSTNASFIYLLDAFDGTVKSTFSGYPN 230 (311)
T ss_pred EEeCCCcEEEEEccCCcEeeeEeeccC
Confidence 55 467799999999999999998765
No 194
>KOG0301|consensus
Probab=60.59 E-value=34 Score=37.21 Aligned_cols=111 Identities=21% Similarity=0.258 Sum_probs=74.9
Q ss_pred CceeeeeeeCCEEEEEECCe--EEEEcCCCC---ceeEecCCCCCceeEEE-EeCCeEEEEEeCCCeEEEEecCccceee
Q psy2153 63 HSVRSLAAVYNKVWCGYKNK--IHVVDPKSL---KSFDAHPRRESQVRQMT-WAGDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 63 ~PV~cml~v~~~LW~g~gnk--I~VIn~~Tl---ksf~~~~~~~~~V~~Ma-~~G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
.=||.+.++.+.=..+|+|. |...+. +. -....|+ +-|..|. ..++++-+|+..+.++|.|+.. ++.|
T Consensus 180 D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 180 DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred hheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 56999999998777788876 444444 23 2333344 5666666 4468899999999999999999 9999
Q ss_pred eeecch----hhhhhcccccccccceeeccccccccccCcc--ccCCCcccccccc
Q psy2153 137 DVDIEP----YVSKMLGMYTFCSCVTIRTLLAETIISPFGW--YANNPADILESFT 186 (325)
Q Consensus 137 dIdIa~----~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~f~ 186 (325)
.|-.-. .+..++ =++|-+-+.|-.++=|.- ++..+.++++.|+
T Consensus 254 ~I~lPttsiWsa~~L~-------NgDIvvg~SDG~VrVfT~~k~R~As~evl~afd 302 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLL-------NGDIVVGGSDGRVRVFTVDKDRKASDEVLKAFD 302 (745)
T ss_pred EEecCccceEEEEEee-------CCCEEEeccCceEEEEEecccccCCHHHHHHHH
Confidence 987644 122232 134455556666665553 4667778888883
No 195
>KOG0974|consensus
Probab=60.36 E-value=96 Score=35.15 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=79.4
Q ss_pred eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCceeeeeeeC---CEEEEEEC---CeEEEEcCCCC-ceeE
Q psy2153 24 VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHSVRSLAAVY---NKVWCGYK---NKIHVVDPKSL-KSFD 95 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~PV~cml~v~---~~LW~g~g---nkI~VIn~~Tl-ksf~ 95 (325)
.+.+..+++.+..|.+++-. +.|-+. .++. ...+..+++.+. ++++.++| ++|+|..+.-- +.-
T Consensus 98 e~k~i~l~~~~ns~~i~d~~--~~~~~~-----~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~- 169 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSK--NSSVLS-----KIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI- 169 (967)
T ss_pred hcceEEEEEcCceEEEEecc--cCceeh-----hcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-
Confidence 45677778888888888732 223322 2222 225555666554 67888777 67888887632 111
Q ss_pred ecCCCCCceeEEEEeCC-eEEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceeecccccc
Q psy2153 96 AHPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAET 166 (325)
Q Consensus 96 ~~~~~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~~~~~~~ 166 (325)
.-.-.+..|-.|..+-+ ..=++++.|-++|+|..+|.+-+--....+...-.--+ -.|..|.|+|-|.
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~---~~~n~i~t~gedc 238 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC---FLPNRIITVGEDC 238 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE---eccceeEEeccce
Confidence 11123477888888533 46679999999999999999988755554433211100 1133566666654
No 196
>KOG1445|consensus
Probab=60.35 E-value=39 Score=36.88 Aligned_cols=83 Identities=16% Similarity=0.268 Sum_probs=60.2
Q ss_pred EEcCCCCCceeeeeee---CCEEEEEECCeEEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEe-CCCeEEEEecCc
Q psy2153 56 VTLGLPHHSVRSLAAV---YNKVWCGYKNKIHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHT 131 (325)
Q Consensus 56 I~LG~~~~PV~cml~v---~~~LW~g~gnkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~-~ss~IrL~ha~T 131 (325)
+.+|.-+-+|-|+-.+ ++-|..+.+..++|.|..|-|....-......|..|.|+.+|--++.+ .+-.||+||..+
T Consensus 122 ~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred eeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 4566555888888776 478899999999999999986543322233778999999888555554 578899999875
Q ss_pred c-ceeeee
Q psy2153 132 Y-QHLQDV 138 (325)
Q Consensus 132 ~-e~LqdI 138 (325)
. +.+|..
T Consensus 202 ~~~piQ~t 209 (1012)
T KOG1445|consen 202 SMEPIQTT 209 (1012)
T ss_pred CCCccccc
Confidence 3 444443
No 197
>KOG1332|consensus
Probab=60.15 E-value=97 Score=30.22 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=72.2
Q ss_pred EeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC---CEEEEEE--CCeEEEEcCCCC--ceeE
Q psy2153 23 HVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKVWCGY--KNKIHVVDPKSL--KSFD 95 (325)
Q Consensus 23 ~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~---~~LW~g~--gnkI~VIn~~Tl--ksf~ 95 (325)
|...|+--+-+||+|-||+....++ ......|---+.||-...-.+ +.+-++| -.||+|..-++. .+.-
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCC----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 5677888899999999999665553 334456633358998887776 6676554 488999988877 2223
Q ss_pred ecCCCCCceeEEEEe--CCeEEEEEe-CCCeEEEEecCcc
Q psy2153 96 AHPRRESQVRQMTWA--GDGVWVSIR-LDSTLRMYNAHTY 132 (325)
Q Consensus 96 ~~~~~~~~V~~Ma~~--G~GVWiS~~-~ss~IrL~ha~T~ 132 (325)
.+...+..|+.++++ +.|.=+++- .+..|+++...+-
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 333444888887775 556555554 5788888766543
No 198
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=59.90 E-value=1.1e+02 Score=32.40 Aligned_cols=101 Identities=13% Similarity=0.280 Sum_probs=69.2
Q ss_pred CCeEEEEecCC-cEEEEEcCCCCCCCCCCCeEE--EcCCCCCceeeeeeeCC-E-EEEEECC-eEEEEcCCCCceeEecC
Q psy2153 25 QGRVVCALADG-SVAIFRRGPDGQWDLSKYHTV--TLGLPHHSVRSLAAVYN-K-VWCGYKN-KIHVVDPKSLKSFDAHP 98 (325)
Q Consensus 25 ~~~VfVgLANG-tLaVF~R~~~g~WD~~~~~~I--~LG~~~~PV~cml~v~~-~-LW~g~gn-kI~VIn~~Tlksf~~~~ 98 (325)
.+.+.+|.-+| .|-||+...+. .+.+ .+|. |-.|-+-.+ + +-+|.-+ .|.+|+.++.+.=.+..
T Consensus 371 ~e~~vigt~dgD~l~iyd~~~~e------~kr~e~~lg~----I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk 440 (668)
T COG4946 371 PEGDVIGTNDGDKLGIYDKDGGE------VKRIEKDLGN----IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK 440 (668)
T ss_pred CcceEEeccCCceEEEEecCCce------EEEeeCCccc----eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc
Confidence 55789999999 89999854321 1222 2333 555544432 3 4444433 38899998885555555
Q ss_pred CCCCceeEEEEeCCeEEEEEeCC-----CeEEEEecCcccee
Q psy2153 99 RRESQVRQMTWAGDGVWVSIRLD-----STLRMYNAHTYQHL 135 (325)
Q Consensus 99 ~~~~~V~~Ma~~G~GVWiS~~~s-----s~IrL~ha~T~e~L 135 (325)
.++..|+..+++..+=|+|..-- -.|+|||..+.++.
T Consensus 441 S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 441 SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 56789999999999999988753 24899999998763
No 199
>KOG2321|consensus
Probab=59.81 E-value=61 Score=34.88 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=40.6
Q ss_pred ceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCC
Q psy2153 17 TALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL 91 (325)
Q Consensus 17 sVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl 91 (325)
+|++|.+.++ .+=||+++|.+.+|+-.+. .|-.+.=..-..||..+-.... .-+|+|+-.|-..+
T Consensus 230 svTal~F~d~gL~~aVGts~G~v~iyDLRa~------~pl~~kdh~~e~pi~~l~~~~~----~~q~~v~S~Dk~~~ 296 (703)
T KOG2321|consen 230 SVTALKFRDDGLHVAVGTSTGSVLIYDLRAS------KPLLVKDHGYELPIKKLDWQDT----DQQNKVVSMDKRIL 296 (703)
T ss_pred cceEEEecCCceeEEeeccCCcEEEEEcccC------CceeecccCCccceeeeccccc----CCCceEEecchHHh
Confidence 5999999885 6889999999999995442 2222222112477877665543 33455555444444
No 200
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=59.58 E-value=67 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=45.7
Q ss_pred eeeeeeeC------CEEEEEECCe-EEEEcCCCC-ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEec
Q psy2153 65 VRSLAAVY------NKVWCGYKNK-IHVVDPKSL-KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 129 (325)
Q Consensus 65 V~cml~v~------~~LW~g~gnk-I~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha 129 (325)
|++|...+ +.|-+||.+. |-|++-+.+ ..+.. ...|+.|+..+.+-+..--...+|-+|+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e----~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITE----TDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEec----ccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 56676663 6899999977 999888876 33332 25688888888888877778888888865
No 201
>KOG0293|consensus
Probab=59.33 E-value=38 Score=35.10 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred eEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC-EEE-EEECCe-EEEEcCCCC---cee
Q psy2153 21 PVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN-KVW-CGYKNK-IHVVDPKSL---KSF 94 (325)
Q Consensus 21 I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~-~LW-~g~gnk-I~VIn~~Tl---ksf 94 (325)
|.|.+..|+.-..|-.+.+|.|.+-- | -..++. .+||++...-++ ++- +.-.++ |+..|-+.- ..|
T Consensus 362 it~Dgk~vl~v~~d~~i~l~~~e~~~--d---r~lise---~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY 433 (519)
T KOG0293|consen 362 ITYDGKYVLLVTVDKKIRLYNREARV--D---RGLISE---EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKY 433 (519)
T ss_pred EcCCCcEEEEEecccceeeechhhhh--h---hccccc---cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHh
Confidence 34567788888899999999986531 1 112332 468888877764 332 233333 666665543 344
Q ss_pred EecCCCCCcee-EEEEeCCeEEEEEeCCCeEEEEecCccceeeeee
Q psy2153 95 DAHPRRESQVR-QMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 95 ~~~~~~~~~V~-~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdId 139 (325)
.-|....--|+ |..-..+-.-.|-+.++.|+.||-.+.++|.++.
T Consensus 434 ~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls 479 (519)
T KOG0293|consen 434 FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS 479 (519)
T ss_pred hcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec
Confidence 44443333332 3322222355678899999999999999987764
No 202
>KOG0283|consensus
Probab=57.83 E-value=7.1 Score=42.47 Aligned_cols=63 Identities=19% Similarity=0.429 Sum_probs=50.6
Q ss_pred eEEEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhh
Q psy2153 82 KIHVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 82 kI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
++++|..+-+..|.-|. .-|-.+.|+..+--+|-+.|-|+||||..+-++|.-|-=..+||-.
T Consensus 353 ~~f~f~ekP~~ef~GHt---~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV 415 (712)
T KOG0283|consen 353 KAFVFSEKPFCEFKGHT---ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV 415 (712)
T ss_pred ccccccccchhhhhccc---hhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence 34555555556666666 6688999999999999999999999999999999988777666654
No 203
>KOG0973|consensus
Probab=57.59 E-value=54 Score=37.01 Aligned_cols=91 Identities=21% Similarity=0.373 Sum_probs=65.5
Q ss_pred cEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-------C--------EE--EE--EECCe-EEEEcCCCCce-e
Q psy2153 36 SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-------N--------KV--WC--GYKNK-IHVVDPKSLKS-F 94 (325)
Q Consensus 36 tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-------~--------~L--W~--g~gnk-I~VIn~~Tlks-f 94 (325)
+++|++| +.|+.+. =-+|. +.|++|..... + +. -+ |++++ |-|.++...+. |
T Consensus 246 ~~~IieR---~tWk~~~---~LvGH-~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 246 TIAIIER---GTWKVDK---DLVGH-SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred eeEEEec---CCceeee---eeecC-CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 6999998 6698543 12464 57998876651 1 22 33 44554 99999988864 5
Q ss_pred EecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccc
Q psy2153 95 DAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e 133 (325)
.+|.-.+..|..|.|+.+| --++++.|++|.++|-+..|
T Consensus 319 vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 6777788999999999444 33499999999999977655
No 204
>KOG0293|consensus
Probab=56.53 E-value=57 Score=33.82 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=73.6
Q ss_pred eeCCCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEE------EcCCCCCceeeeeeeCCEEEEEEC---
Q psy2153 12 NKILDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTV------TLGLPHHSVRSLAAVYNKVWCGYK--- 80 (325)
Q Consensus 12 IkL~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I------~LG~~~~PV~cml~v~~~LW~g~g--- 80 (325)
|...++|+++.-.++ .++|.|++-.+- .||++..+.+ +.|. --||+...=++.-.+++|
T Consensus 392 ise~~~its~~iS~d~k~~LvnL~~qei~--------LWDl~e~~lv~kY~Ghkq~~--fiIrSCFgg~~~~fiaSGSED 461 (519)
T KOG0293|consen 392 ISEEQPITSFSISKDGKLALVNLQDQEIH--------LWDLEENKLVRKYFGHKQGH--FIIRSCFGGGNDKFIASGSED 461 (519)
T ss_pred ccccCceeEEEEcCCCcEEEEEcccCeeE--------EeecchhhHHHHhhcccccc--eEEEeccCCCCcceEEecCCC
Confidence 455667777766543 455666665443 5777765443 2233 346665555554555555
Q ss_pred CeEEEEcCCCCceeEecCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecCcc
Q psy2153 81 NKIHVVDPKSLKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 81 nkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~T~ 132 (325)
.||||.+-.+.|.+++-+.....|+|.++.... -.-|-+.+.+||.|-....
T Consensus 462 ~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 462 SKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred ceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 569999999998777766666889998887544 6667888999999976543
No 205
>PLN02153 epithiospecifier protein
Probab=55.36 E-value=2e+02 Score=27.64 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=30.6
Q ss_pred eeeeeCCEEEEEEC---------------CeEEEEcCCCCceeEecC----CCCCceeEEEEeCCeEEEEEe
Q psy2153 67 SLAAVYNKVWCGYK---------------NKIHVVDPKSLKSFDAHP----RRESQVRQMTWAGDGVWVSIR 119 (325)
Q Consensus 67 cml~v~~~LW~g~g---------------nkI~VIn~~Tlksf~~~~----~~~~~V~~Ma~~G~GVWiS~~ 119 (325)
++..+++++++-.| |.++++|+++.+.-++.. ........++..+..+++.--
T Consensus 188 ~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 56778899887322 569999999985444322 112223344555555555433
No 206
>KOG0639|consensus
Probab=54.47 E-value=23 Score=37.54 Aligned_cols=101 Identities=17% Similarity=0.349 Sum_probs=72.3
Q ss_pred eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEE-Ec-CCCCCceeeeeee--CCEEEEEEC-CeEEEEcCCCCceeEecC
Q psy2153 24 VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTV-TL-GLPHHSVRSLAAV--YNKVWCGYK-NKIHVVDPKSLKSFDAHP 98 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I-~L-G~~~~PV~cml~v--~~~LW~g~g-nkI~VIn~~Tlksf~~~~ 98 (325)
..+-.|+.++||.|+||+ +.+...+ .+ |. ..-..|+.+- +-+||-|-= |.|-..|-.+.+++.-|.
T Consensus 520 DakvcFsccsdGnI~vwD--------Lhnq~~VrqfqGh-tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWD--------LHNQTLVRQFQGH-TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred ccceeeeeccCCcEEEEE--------cccceeeecccCC-CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 355689999999999976 3333222 22 32 2346788777 569998654 669999988886665555
Q ss_pred CCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccce
Q psy2153 99 RRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQH 134 (325)
Q Consensus 99 ~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~ 134 (325)
. .+||-.+-+...|=|+++-. ++.+.+-|+.--+.
T Consensus 591 F-~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k 626 (705)
T KOG0639|consen 591 F-SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK 626 (705)
T ss_pred h-hhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence 3 37888888888999999985 77799988876553
No 207
>KOG0265|consensus
Probab=54.32 E-value=2e+02 Score=28.72 Aligned_cols=133 Identities=15% Similarity=0.228 Sum_probs=74.0
Q ss_pred CCCCCCccceeeCC-CceeeeEEe--CCeEEEEecCCcEEEEEcCCCC--------------------------------
Q psy2153 2 EYPHPTPYPLNKIL-DTALPPVHV--QGRVVCALADGSVAIFRRGPDG-------------------------------- 46 (325)
Q Consensus 2 ~~~~~~~L~~IkL~-dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g-------------------------------- 46 (325)
+|.+-+-.|.+|+- .+|+.+.+. .+.||-+=+|-+|++|+-..+.
T Consensus 76 v~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~ 155 (338)
T KOG0265|consen 76 VYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDG 155 (338)
T ss_pred ccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCc
Confidence 35555566666765 489999985 5567777788889998854321
Q ss_pred ---CCCCCCCeEEEcCCCCCceeeeeee--CCEEEEE-ECCeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEE-E
Q psy2153 47 ---QWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCG-YKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVW-V 116 (325)
Q Consensus 47 ---~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g-~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVW-i 116 (325)
.||...-..+.+=....+++....- .+++-.| --|.|.|.|+... ..+.-|. ..|++|..+..|-+ .
T Consensus 156 t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 156 TLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLL 232 (338)
T ss_pred eEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc---CceeeEEeccCCCccc
Confidence 1222211111111111222222222 1444433 3344666666333 3444444 66888888876644 3
Q ss_pred EEeCCCeEEEEecCccceeee
Q psy2153 117 SIRLDSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 117 S~~~ss~IrL~ha~T~e~Lqd 137 (325)
+-..+.+||.||..-+-+-|-
T Consensus 233 snsMd~tvrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQR 253 (338)
T ss_pred cccccceEEEEEecccCCCCc
Confidence 556688999998876655444
No 208
>KOG2139|consensus
Probab=53.72 E-value=81 Score=32.25 Aligned_cols=102 Identities=19% Similarity=0.295 Sum_probs=64.7
Q ss_pred EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee---CCEEEEEECCeEEEEcCCC-C-----------c
Q psy2153 28 VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV---YNKVWCGYKNKIHVVDPKS-L-----------K 92 (325)
Q Consensus 28 VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v---~~~LW~g~gnkI~VIn~~T-l-----------k 92 (325)
.-+++-|-.|.||+++.+ .+ ..++-- .+.-|+||.-- ...+=+||+.-|-+..... + +
T Consensus 113 fava~nddvVriy~ksst-----~p-t~Lks~-sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~ 185 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSST-----CP-TKLKSV-SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTH 185 (445)
T ss_pred hhhhccCcEEEEeccCCC-----CC-ceecch-hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccccccccccc
Confidence 445666668999986542 22 222221 23668888654 3577889988877765322 1 1
Q ss_pred eeEecCCC-CCceeEEEEeCCe-EEEEEe-CCCeEEEEecCccceee
Q psy2153 93 SFDAHPRR-ESQVRQMTWAGDG-VWVSIR-LDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 93 sf~~~~~~-~~~V~~Ma~~G~G-VWiS~~-~ss~IrL~ha~T~e~Lq 136 (325)
..++.+++ ...|+.|.+..+| .|++-+ .|+.|++||..|.+..-
T Consensus 186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p 232 (445)
T KOG2139|consen 186 HLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP 232 (445)
T ss_pred chhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc
Confidence 22333332 3789999998666 777666 47889999999987543
No 209
>KOG0267|consensus
Probab=52.89 E-value=24 Score=38.60 Aligned_cols=120 Identities=13% Similarity=0.214 Sum_probs=74.2
Q ss_pred CccceeeCCCceeeeEEe------------CCeEEEEecCCcEEEEEcCCCCCCCCCCCeE---EEcCCCCCceeeeeee
Q psy2153 7 TPYPLNKILDTALPPVHV------------QGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAV 71 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~------------~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~---I~LG~~~~PV~cml~v 71 (325)
..||.|.=|.+++++..+ +.-|-+|-++|+|-| ||++.-+. +.-+. .++.++...
T Consensus 52 ~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~--------wDleeAk~vrtLtgh~--~~~~sv~f~ 121 (825)
T KOG0267|consen 52 VNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV--------WDLEEAKIVRTLTGHL--LNITSVDFH 121 (825)
T ss_pred eccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee--------eehhhhhhhhhhhccc--cCcceeeec
Confidence 348888888888884432 334566777888755 55554432 11121 233332222
Q ss_pred CCEEEEEEC---CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCC-CeEEEEecCccceeeeee
Q psy2153 72 YNKVWCGYK---NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLD-STLRMYNAHTYQHLQDVD 139 (325)
Q Consensus 72 ~~~LW~g~g---nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~s-s~IrL~ha~T~e~LqdId 139 (325)
.-.=+-++| ..+.+.|.+-+ +.|.-|. ..|..+....+|=|++-..+ .++++||..-.+.+.|++
T Consensus 122 P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 122 PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred cceEEeccccccccceehhhhccCceeeecCCc---ceeEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence 111112222 23666666644 5565555 67888888999999999887 999999998777777766
No 210
>KOG1517|consensus
Probab=52.85 E-value=1e+02 Score=35.69 Aligned_cols=103 Identities=16% Similarity=0.196 Sum_probs=65.9
Q ss_pred eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEc---CCCCCceeeeeee--C-CEEEEEECC-eEEEEcCCCC--ce-
Q psy2153 24 VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTL---GLPHHSVRSLAAV--Y-NKVWCGYKN-KIHVVDPKSL--KS- 93 (325)
Q Consensus 24 ~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~L---G~~~~PV~cml~v--~-~~LW~g~gn-kI~VIn~~Tl--ks- 93 (325)
..|.+.||+|||.|-+|+|.-... +. .+.. ++...||..+-.= + ++|..||.| .|.++|...- ..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~---ds--~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~ 1294 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPP---DS--LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETF 1294 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCc---cc--cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccc
Confidence 368899999999999999764321 11 1222 2211334333221 1 478888885 5999998773 22
Q ss_pred --eEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCc
Q psy2153 94 --FDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 131 (325)
Q Consensus 94 --f~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T 131 (325)
..+|.+-++.+++|.+...-=-||.-....|.+|+..-
T Consensus 1295 ~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1295 LTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred ceeeeccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence 23444445678999887666666777778899998754
No 211
>KOG1272|consensus
Probab=52.31 E-value=49 Score=34.70 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=44.1
Q ss_pred eEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeec
Q psy2153 82 KIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 82 kI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdI 140 (325)
.|....|.+- -..-.|. ..|+.+|....|-+++... +..+++||...+++|+.+-.
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence 3566666554 2334555 7799999999999999886 99999999999999888876
No 212
>KOG1407|consensus
Probab=52.21 E-value=1.5e+02 Score=29.23 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCCCCCCccceeeCCC-ceeeeEEe-CCeEE-EEecCCcEEEEEcCCCCCCCCCCCeEEE-cCCCCCceeeeeeeCCEEE
Q psy2153 1 MEYPHPTPYPLNKILD-TALPPVHV-QGRVV-CALADGSVAIFRRGPDGQWDLSKYHTVT-LGLPHHSVRSLAAVYNKVW 76 (325)
Q Consensus 1 ~~~~~~~~L~~IkL~d-sVl~I~~~-~~~Vf-VgLANGtLaVF~R~~~g~WD~~~~~~I~-LG~~~~PV~cml~v~~~LW 76 (325)
|+||.-|++.+|+-.. --.||.+. +||-| +|-||-. -..||+++--++. +..-.-|||.+-.-.|-=.
T Consensus 174 LsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl--------vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 174 LSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL--------VSLWDVDELICERCISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred EeccccccccccccCCcceEEEEECCCCceEeeccccce--------eeccChhHhhhheeeccccCceEEEEeccCcce
Confidence 6899999999998754 33444443 33333 3444422 1479998864332 2323379999988876545
Q ss_pred EEEC--Ce-EEEEcCCCC-ceeEecC
Q psy2153 77 CGYK--NK-IHVVDPKSL-KSFDAHP 98 (325)
Q Consensus 77 ~g~g--nk-I~VIn~~Tl-ksf~~~~ 98 (325)
.|++ +. |=|-+.+|. +-.+++.
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~ 271 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPC 271 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeec
Confidence 5554 44 556667777 5555554
No 213
>KOG1912|consensus
Probab=52.12 E-value=18 Score=39.97 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=69.0
Q ss_pred eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC------------CEEEEEECCeEEEEcCCCC--c
Q psy2153 27 RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY------------NKVWCGYKNKIHVVDPKSL--K 92 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~------------~~LW~g~gnkI~VIn~~Tl--k 92 (325)
-|-||+.+|+|-||+-.+.- -++..++.+ +-|+|+--.+ +.-=-++.|+++|.+-.|. |
T Consensus 439 LvAvGT~sGTV~vvdvst~~-----v~~~fsvht--~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk 511 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNA-----VAASFSVHT--SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSK 511 (1062)
T ss_pred eEEeecCCceEEEEEecchh-----hhhhhcccc--cceeeeeeccceeEEEeeeccccccccceeeeEEEEEccccccc
Confidence 37789999999999865421 111122222 2233332221 1222466789999999998 8
Q ss_pred eeEe-cCCCCCceeEEEEeCCe--EEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 93 SFDA-HPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 93 sf~~-~~~~~~~V~~Ma~~G~G--VWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.|.. ....++.|+.+-.+-.| +-|.|+ +--+++||-+|..+|++...+
T Consensus 512 ~fR~l~~~despI~~irvS~~~~yLai~Fr-~~plEiwd~kt~~~lr~mS~a 562 (1062)
T KOG1912|consen 512 RFRGLQKPDESPIRAIRVSSSGRYLAILFR-REPLEIWDLKTLRMLRLMSLA 562 (1062)
T ss_pred ccccCCCCCcCcceeeeecccCceEEEEec-ccchHHHhhccchHHHHHhhc
Confidence 8864 34457889988776555 555555 455899999999988876654
No 214
>KOG1188|consensus
Probab=50.91 E-value=88 Score=31.60 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=79.9
Q ss_pred CccceeeCCC-ceeeeEEe----CCeEEEEecCCcEEEEE-cCCCCCCCCCCCeEEEcCCCCCceeeeeee-CC-EEEEE
Q psy2153 7 TPYPLNKILD-TALPPVHV----QGRVVCALADGSVAIFR-RGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YN-KVWCG 78 (325)
Q Consensus 7 ~~L~~IkL~d-sVl~I~~~----~~~VfVgLANGtLaVF~-R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~-~LW~g 78 (325)
+.|..+|-+. .+.-+.+. ..-|+.+..||+|-+|+ |..+. .+..---+.|..|..|+..= .+ -+-||
T Consensus 61 ~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a~~~~~~~~~~~f~~ld~nck~~ii~~G 135 (376)
T KOG1188|consen 61 QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SARISWTQQSGTPFICLDLNCKKNIIACG 135 (376)
T ss_pred hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hhheeccCCCCCcceEeeccCcCCeEEec
Confidence 3566666553 44444443 35799999999999998 33321 11111112233577777653 23 33344
Q ss_pred EC-----CeEEEEcCCCCce-----eEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccc----eeeeeecchhh
Q psy2153 79 YK-----NKIHVVDPKSLKS-----FDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQ----HLQDVDIEPYV 144 (325)
Q Consensus 79 ~g-----nkI~VIn~~Tlks-----f~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e----~LqdIdIa~~v 144 (325)
.. -.|++.|.+.-++ ++.|.|.-.+|+.-. ..-..-+|-+-+..+.|||++--. +++.||..+.|
T Consensus 136 tE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP-~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI 214 (376)
T KOG1188|consen 136 TELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP-SDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSI 214 (376)
T ss_pred cccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC-CCCCeEEeecccceEEeeecCCCcchhhHHHhhccccee
Confidence 33 2367777766533 577776544444222 334577788999999999987543 57778877766
Q ss_pred hhh
Q psy2153 145 SKM 147 (325)
Q Consensus 145 ~~~ 147 (325)
++.
T Consensus 215 ~~i 217 (376)
T KOG1188|consen 215 HLI 217 (376)
T ss_pred eee
Confidence 543
No 215
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=50.77 E-value=37 Score=18.94 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=20.0
Q ss_pred CCceeeeEEeC--CeEEEEecCCcEEEEE
Q psy2153 15 LDTALPPVHVQ--GRVVCALADGSVAIFR 41 (325)
Q Consensus 15 ~dsVl~I~~~~--~~VfVgLANGtLaVF~ 41 (325)
.+.|.++.+.. +.++.+-.+|.+.+|+
T Consensus 12 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45788888764 4777788888887763
No 216
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.76 E-value=92 Score=33.18 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=46.8
Q ss_pred ceeeeeee--CCEEEEEECCe-EEEEcCCCC-ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecC
Q psy2153 64 SVRSLAAV--YNKVWCGYKNK-IHVVDPKSL-KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 64 PV~cml~v--~~~LW~g~gnk-I~VIn~~Tl-ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~ 130 (325)
+|.|+..- +++|-.||.+. |.++|..+- ..+.- .+-..++++|..+| +.+..+..+.|.+||..
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee---ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 55555443 58999999966 999998776 33332 23668899997555 88888888999999964
No 217
>KOG2063|consensus
Probab=50.29 E-value=33 Score=38.40 Aligned_cols=79 Identities=9% Similarity=0.048 Sum_probs=57.4
Q ss_pred eCCCcee-eeEEeCCeEEEEecCCcEEEEEcCCCCCCC-CCC---C-eE-EEcCCCCCceeeeeeeC--CEEEEEECCeE
Q psy2153 13 KILDTAL-PPVHVQGRVVCALADGSVAIFRRGPDGQWD-LSK---Y-HT-VTLGLPHHSVRSLAAVY--NKVWCGYKNKI 83 (325)
Q Consensus 13 kL~dsVl-~I~~~~~~VfVgLANGtLaVF~R~~~g~WD-~~~---~-~~-I~LG~~~~PV~cml~v~--~~LW~g~gnkI 83 (325)
++|..|. |+.-.++.||||..+|+|..|.-...+.-. .+. + +. -.++ ..||+.|.+.. +-+.+-|.++|
T Consensus 13 ~~~~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~--kk~i~~l~~~~~~~~ll~l~dsqi 90 (877)
T KOG2063|consen 13 RLPLEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFS--KKPINKLLVCASLELLLILSDSQI 90 (877)
T ss_pred hcCCccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhc--cchhHHHhhcchhcchheecCCcc
Confidence 4566677 999999999999999999999865443211 111 1 11 1223 38999998885 78899999999
Q ss_pred EEEcCCCCce
Q psy2153 84 HVVDPKSLKS 93 (325)
Q Consensus 84 ~VIn~~Tlks 93 (325)
.+.+..+++.
T Consensus 91 ~~~~l~~~~~ 100 (877)
T KOG2063|consen 91 AVHKLPELEP 100 (877)
T ss_pred eeeecCcccc
Confidence 9998888743
No 218
>PHA03098 kelch-like protein; Provisional
Probab=49.47 E-value=3.1e+02 Score=28.07 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=64.3
Q ss_pred CCccceeeCCCceeeeEEeCCeEEEEec---C----CcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEE
Q psy2153 6 PTPYPLNKILDTALPPVHVQGRVVCALA---D----GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCG 78 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~~~~VfVgLA---N----GtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g 78 (325)
|+.+..+..|-.-.+....++++||-=. + .++.+|+-.. +.|..-.+ ++.+. --.++..+++++++-
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~~--~p~~r---~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNT-NKWSKGSP--LPISH---YGGCAIYHDGKIYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCC-CeeeecCC--CCccc---cCceEEEECCEEEEE
Confidence 3333333333333445567888888422 1 2477777544 46853222 11111 123577788999875
Q ss_pred EC----------CeEEEEcCCCCceeEecCCCC-CceeEEEEeCCeEEEEEeC-----CCeEEEEecCccc
Q psy2153 79 YK----------NKIHVVDPKSLKSFDAHPRRE-SQVRQMTWAGDGVWVSIRL-----DSTLRMYNAHTYQ 133 (325)
Q Consensus 79 ~g----------nkI~VIn~~Tlksf~~~~~~~-~~V~~Ma~~G~GVWiS~~~-----ss~IrL~ha~T~e 133 (325)
.| +.+++.|+++.+...+.+-+. ..-..++..++.+|+.--. ...+..||.++.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 54 248999999885443322111 1112344456667764322 2467777776654
No 219
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=49.36 E-value=2.6e+02 Score=27.19 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=84.8
Q ss_pred CCCccceeeCCC---ceeeeEEeCCeEEEEecCCcEEEEEcCCC-CCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC
Q psy2153 5 HPTPYPLNKILD---TALPPVHVQGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK 80 (325)
Q Consensus 5 ~~~~L~~IkL~d---sVl~I~~~~~~VfVgLANGtLaVF~R~~~-g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g 80 (325)
.-+.+|+-++++ -+-..+..++.||++..+|.+..++.+.+ -.|..+...-+.+.....|+ .-++.++.++.
T Consensus 130 ~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~----~~~~~vy~~~~ 205 (370)
T COG1520 130 TGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA----IASGTVYVGSD 205 (370)
T ss_pred CCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce----eecceEEEecC
Confidence 346677778877 44455667889999998899999886543 24753322113332223444 56788888877
Q ss_pred C---eEEEEcCCCCc---eeEe-cC-CC-----CCce-eEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 81 N---KIHVVDPKSLK---SFDA-HP-RR-----ESQV-RQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 81 n---kI~VIn~~Tlk---sf~~-~~-~~-----~~~V-~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+ +++.+|+++-+ +... +. .. ...+ ...+..+.+++ ....+..+..+|..+.+.+.+++..
T Consensus 206 ~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~-~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 206 GYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVY-AGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred CCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEE-EEecCCeEEEEEcCCCceEEEEecc
Confidence 4 69999998871 1111 11 11 1122 24666677885 4444555999999999999999986
No 220
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=49.30 E-value=2.8e+02 Score=27.52 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=67.0
Q ss_pred CCeEEEEecC-CcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeee-eeeCCEEEEEEC----CeEEEEcCCCCceeEecC
Q psy2153 25 QGRVVCALAD-GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL-AAVYNKVWCGYK----NKIHVVDPKSLKSFDAHP 98 (325)
Q Consensus 25 ~~~VfVgLAN-GtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cm-l~v~~~LW~g~g----nkI~VIn~~Tlksf~~~~ 98 (325)
.+++||...+ ..+.|++-... ..-+.+.+|. .|..-- ...++.+|++-. +.|.+||+.|.+....-+
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~-----~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATN-----TVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred CCeEEEecCCCCeEEEEcCccc-----ceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 5568888876 67888871111 2225677776 443222 223469999776 669999999994333322
Q ss_pred CCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceee
Q psy2153 99 RRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 99 ~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
-.+.. ..++.. |.-+|++=..+..|.++|..+-+..+
T Consensus 158 vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 158 VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 22223 556655 44589888889999999987776663
No 221
>KOG1310|consensus
Probab=49.20 E-value=71 Score=34.33 Aligned_cols=92 Identities=25% Similarity=0.396 Sum_probs=60.2
Q ss_pred CCCCCCCeE---EEcCCCCCceeeeeee---CCEEEE-EECCe-EEEEcCCCC-------------ceeEecCCCCCcee
Q psy2153 47 QWDLSKYHT---VTLGLPHHSVRSLAAV---YNKVWC-GYKNK-IHVVDPKSL-------------KSFDAHPRRESQVR 105 (325)
Q Consensus 47 ~WD~~~~~~---I~LG~~~~PV~cml~v---~~~LW~-g~gnk-I~VIn~~Tl-------------ksf~~~~~~~~~V~ 105 (325)
.||.-.+|. |.-|. ..-|=|.-.| ++++-+ |.|++ |+++|...+ ..|..|. ..|.
T Consensus 76 vWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht---~rVK 151 (758)
T KOG1310|consen 76 VWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHT---DRVK 151 (758)
T ss_pred eecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhh---hhhh
Confidence 477776644 45565 2556665555 466554 66666 999998874 3456666 5688
Q ss_pred EEEEeCCe--EEEEEeCCCeEEEEecCc-cceeeeeecch
Q psy2153 106 QMTWAGDG--VWVSIRLDSTLRMYNAHT-YQHLQDVDIEP 142 (325)
Q Consensus 106 ~Ma~~G~G--VWiS~~~ss~IrL~ha~T-~e~LqdIdIa~ 142 (325)
.+|....+ ++-|.+.+++||-||... ..+-++-|+-.
T Consensus 152 ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 152 RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred heecCCCCCceEEEecCCcceeeecccCCccCCccccccH
Confidence 88887555 444999999999999865 23344444433
No 222
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=48.47 E-value=2e+02 Score=29.02 Aligned_cols=120 Identities=11% Similarity=0.091 Sum_probs=66.5
Q ss_pred eeeeEEeCCeEEEEecCCcEEEEEcCCCC-CCC-C-CCCeEEEcCCCCCcee--eeeeeC--CEEEEEECCeEEEEcCCC
Q psy2153 18 ALPPVHVQGRVVCALADGSVAIFRRGPDG-QWD-L-SKYHTVTLGLPHHSVR--SLAAVY--NKVWCGYKNKIHVVDPKS 90 (325)
Q Consensus 18 Vl~I~~~~~~VfVgLANGtLaVF~R~~~g-~WD-~-~~~~~I~LG~~~~PV~--cml~v~--~~LW~g~gnkI~VIn~~T 90 (325)
+..+.+.++.++|=+.++++.+.....+. .|. + +.|....--.+..... ..+... -.+-.+.+..|++|+...
T Consensus 130 i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 130 IFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 33445555668888888888777533321 111 1 1111111000000010 112222 234445566677666555
Q ss_pred CceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeecc
Q psy2153 91 LKSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 91 lksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdIa 141 (325)
.+. -+....+.+|+.+-.|=.+|+-+ +..+.+....-.+.+.|+|+.
T Consensus 210 ~~~----i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 210 FKQ----IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred ccc----ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 432 11236799999997776777665 468888888888899999998
No 223
>KOG1409|consensus
Probab=47.90 E-value=1.8e+02 Score=29.64 Aligned_cols=35 Identities=17% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCCceeEEEEe-CCeEEEEEeCCCeEEEEecCccc
Q psy2153 99 RRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 99 ~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
.....|+++.|. +.++-+|...+..+..||.--.+
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~ 230 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK 230 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc
Confidence 344778999997 77899999999999999986554
No 224
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.58 E-value=76 Score=30.36 Aligned_cols=114 Identities=11% Similarity=0.100 Sum_probs=0.0
Q ss_pred eEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeE---EEcCCCCCceeeeeeeCCEEEEEECCe--EEEEcCCCCceeE
Q psy2153 21 PVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHT---VTLGLPHHSVRSLAAVYNKVWCGYKNK--IHVVDPKSLKSFD 95 (325)
Q Consensus 21 I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~---I~LG~~~~PV~cml~v~~~LW~g~gnk--I~VIn~~Tlksf~ 95 (325)
+.|.++++|.+.. .|.+..-+.||++.-+. .+|..|+-==-.+..++|.+|.=..+. -|++|+.|++.+.
T Consensus 51 L~~~~g~i~esTG-----~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 51 LEYLDGHILESTG-----LYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred eeeeCCEEEEecc-----ccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Q ss_pred ecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 96 AHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 96 ~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
.++.+ .+==-++..+..+|+| ..+++|+--|.+|+..+..|++.
T Consensus 126 ~~~y~-GeGWgLt~d~~~Lims-dGsatL~frdP~tfa~~~~v~VT 169 (262)
T COG3823 126 RFSYE-GEGWGLTSDDKNLIMS-DGSATLQFRDPKTFAELDTVQVT 169 (262)
T ss_pred ccccC-CcceeeecCCcceEee-CCceEEEecCHHHhhhcceEEEE
No 225
>KOG1963|consensus
Probab=47.50 E-value=4.5e+02 Score=29.44 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=115.2
Q ss_pred eeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCC--EEEEEECCeEEEEc-CCCC-cee
Q psy2153 19 LPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYN--KVWCGYKNKIHVVD-PKSL-KSF 94 (325)
Q Consensus 19 l~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~--~LW~g~gnkI~VIn-~~Tl-ksf 94 (325)
..+-+.++.+-+|-.+|+|+|.+.-.. .=|-..++++.=.. .+|.++....+ -|+-|-+-.|.|.= .+|- |+|
T Consensus 211 ~~~spn~~~~Aa~d~dGrI~vw~d~~~-~~~~~t~t~lHWH~--~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf 287 (792)
T KOG1963|consen 211 VALSPNERYLAAGDSDGRILVWRDFGS-SDDSETCTLLHWHH--DEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF 287 (792)
T ss_pred EEeccccceEEEeccCCcEEEEecccc-ccccccceEEEecc--cccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence 444556778888899999999974331 22345556666655 78999988854 56666666676653 3444 333
Q ss_pred EecCCCCCceeEEEEeCCeEEEEE-eCCCeEEEEecCccceeeeeecchhh----hhhccc-ccccccce-eeccccccc
Q psy2153 95 DAHPRRESQVRQMTWAGDGVWVSI-RLDSTLRMYNAHTYQHLQDVDIEPYV----SKMLGM-YTFCSCVT-IRTLLAETI 167 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~G~GVWiS~-~~ss~IrL~ha~T~e~LqdIdIa~~v----~~~l~~-~~~~~~~~-~~~~~~~~~ 167 (325)
-|+=++.|.+++++.++=.+++ -.|..|.|-+..+++.+-.|+=-.+. .++... .+.-.||. ++.+---+-
T Consensus 288 --LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~ 365 (792)
T KOG1963|consen 288 --LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGH 365 (792)
T ss_pred --ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCC
Confidence 3555688888888877744444 45899999999888877666633222 111111 12223332 111000000
Q ss_pred cccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCeeeEeCCCC
Q psy2153 168 ISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSRLWIGTASG 228 (325)
Q Consensus 168 ~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~LWiGTs~G 228 (325)
..-.-|+..--...+..+.+|+.++- +| + ..-.+.||+.+-...-.|+-|-.-
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~-----~~--~-~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYS-----DG--D-VNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred CceEEEEeccccceeeeEEEEeeccc-----CC--c-ceeEEeeeeehhhccceEEEEeee
Confidence 00011433333345577788887773 22 2 123677888777777899988643
No 226
>KOG0264|consensus
Probab=47.42 E-value=1.5e+02 Score=30.62 Aligned_cols=103 Identities=19% Similarity=0.276 Sum_probs=69.8
Q ss_pred CCeEEEEecCC-cEEEEEcCCCCCCCCCCC-eEEEcCCCCCceeeeeee--CCEEEEEEC--CeEEEEcCCCC----cee
Q psy2153 25 QGRVVCALADG-SVAIFRRGPDGQWDLSKY-HTVTLGLPHHSVRSLAAV--YNKVWCGYK--NKIHVVDPKSL----KSF 94 (325)
Q Consensus 25 ~~~VfVgLANG-tLaVF~R~~~g~WD~~~~-~~I~LG~~~~PV~cml~v--~~~LW~g~g--nkI~VIn~~Tl----ksf 94 (325)
...+|++.+++ .|.+.+-. +| .+++ +.+.--+ .+|.|+..- ++-+-+..+ +.|.++|.+.| ++|
T Consensus 239 h~~lF~sv~dd~~L~iwD~R---~~-~~~~~~~~~ah~--~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~ 312 (422)
T KOG0264|consen 239 HEDLFGSVGDDGKLMIWDTR---SN-TSKPSHSVKAHS--AEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF 312 (422)
T ss_pred chhhheeecCCCeEEEEEcC---CC-CCCCcccccccC--CceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec
Confidence 55689888876 56666622 24 3444 3333333 799997554 455655333 44999999999 456
Q ss_pred EecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceee
Q psy2153 95 DAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
+-|. ..|.++.++ ...|-.|-..+..+.+||...-.--|
T Consensus 313 e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 313 EGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred cCCC---cceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 6666 667777776 45688888899999999988765554
No 227
>KOG1920|consensus
Probab=46.49 E-value=2.2e+02 Score=33.30 Aligned_cols=116 Identities=12% Similarity=0.234 Sum_probs=73.7
Q ss_pred CceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCE--EEEEECCeEEEEcCCCC
Q psy2153 16 DTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNK--VWCGYKNKIHVVDPKSL 91 (325)
Q Consensus 16 dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~--LW~g~gnkI~VIn~~Tl 91 (325)
|-|+++-|. .+.++++++.|++.+-++... ..--+|....-|.+|..-.|. |-...+.+..++.+.+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL--------ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc--------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 467777774 789999999999888854332 223356555667777766543 44567777777776654
Q ss_pred -----ce----------------------eEecC------------------CCCCceeEEEEeCCeEEEEE-----eCC
Q psy2153 92 -----KS----------------------FDAHP------------------RRESQVRQMTWAGDGVWVSI-----RLD 121 (325)
Q Consensus 92 -----ks----------------------f~~~~------------------~~~~~V~~Ma~~G~GVWiS~-----~~s 121 (325)
+. |..+. +-.++=+.+.|-|+|=++|+ ..+
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 22 21000 00111234788899977777 556
Q ss_pred -CeEEEEecCccceeeeeecc
Q psy2153 122 -STLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 122 -s~IrL~ha~T~e~LqdIdIa 141 (325)
-.||+||.+ ..|+.++..
T Consensus 221 ~RkirV~drE--g~Lns~se~ 239 (1265)
T KOG1920|consen 221 TRKIRVYDRE--GALNSTSEP 239 (1265)
T ss_pred ceeEEEeccc--chhhcccCc
Confidence 789999999 667666653
No 228
>PRK02888 nitrous-oxide reductase; Validated
Probab=46.35 E-value=1.9e+02 Score=31.49 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=69.3
Q ss_pred eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceee-eeeeCCEEEEEEC--CeEEEEcCCCCc-eeE-------
Q psy2153 27 RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRS-LAAVYNKVWCGYK--NKIHVVDPKSLK-SFD------- 95 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~c-ml~v~~~LW~g~g--nkI~VIn~~Tlk-sf~------- 95 (325)
+.|+ .+++|.|++-.....-+..--..|++|. +|=-+ +..=+..++++.+ +.|.|||.++++ .|+
T Consensus 290 ~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK--sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 290 FKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK--NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred EEEE--CCCEEEEEECCccccCCcceEEEEECCC--CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 4554 3557888884331111123336688887 44211 2233467888887 559999999983 332
Q ss_pred ---ecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCc----------cceeeeeecc
Q psy2153 96 ---AHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHT----------YQHLQDVDIE 141 (325)
Q Consensus 96 ---~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T----------~e~LqdIdIa 141 (325)
+...-..--.|-+.+|.| .+.|+-.+|.|--|+.++ .+.++.+|+.
T Consensus 366 ~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~ 425 (635)
T PRK02888 366 AVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVH 425 (635)
T ss_pred eEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCC
Confidence 222222333455556664 999999999999999988 5677878875
No 229
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=46.29 E-value=8 Score=31.46 Aligned_cols=20 Identities=40% Similarity=0.856 Sum_probs=11.7
Q ss_pred EEecCCcEEEEE-cCCCCCCC
Q psy2153 30 CALADGSVAIFR-RGPDGQWD 49 (325)
Q Consensus 30 VgLANGtLaVF~-R~~~g~WD 49 (325)
+||.+|++++++ |++||.|.
T Consensus 67 a~L~~gQ~vliE~rn~DGtWP 87 (88)
T PF14836_consen 67 AGLYDGQVVLIEERNEDGTWP 87 (88)
T ss_dssp TT--TTEEEEEEE--TTS--T
T ss_pred ccCcCCCEEEEEeeccCCCCC
Confidence 468889988888 88999995
No 230
>KOG4378|consensus
Probab=45.92 E-value=2.8e+02 Score=29.66 Aligned_cols=125 Identities=16% Similarity=0.166 Sum_probs=76.3
Q ss_pred CceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEE--EEECCeEEEEcCC
Q psy2153 16 DTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVW--CGYKNKIHVVDPK 89 (325)
Q Consensus 16 dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW--~g~gnkI~VIn~~ 89 (325)
+.|+|+-|. |.++-.+--.|.|.|-.-.. ++ ....+..++ ...||-+-..- ..|- ++..+-|++.|..
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~----~tt~f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQ----KTTTFTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEeccc-Cc----cccceecCC-CCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 589999995 44444444556888776322 21 112233332 23443332222 3333 3444559999999
Q ss_pred CC----ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhh
Q psy2153 90 SL----KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 90 Tl----ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
.+ +..++|..+-+-| ||.-+..-+.+++-.+-.|.+||+.+.+.-.-+--+++.+.+
T Consensus 196 g~sp~~~~~~~HsAP~~gi-cfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstv 256 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGI-CFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTV 256 (673)
T ss_pred CCCcccchhhhccCCcCcc-eecCCccceEEEecccceEEEeecccccccceeeecCCccee
Confidence 88 2336777554433 666677889999999999999999987766666555554443
No 231
>KOG3617|consensus
Probab=45.90 E-value=1e+02 Score=35.04 Aligned_cols=34 Identities=18% Similarity=0.159 Sum_probs=29.2
Q ss_pred eCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCCC
Q psy2153 13 KILDTALPPVHV--QGRVVCALADGSVAIFRRGPDG 46 (325)
Q Consensus 13 kL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g 46 (325)
.+.+-++|++|. +.+||+|...|.++++.|..+|
T Consensus 301 e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~ 336 (1416)
T KOG3617|consen 301 ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKG 336 (1416)
T ss_pred hcCCceEEEEEeccceEEEecccCCcEEEeeecCcc
Confidence 456789999996 6789999999999999987665
No 232
>KOG1963|consensus
Probab=45.50 E-value=48 Score=36.66 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred CEEEEEECCeEEEEcCCCC---ceeEecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccceeeeeecchhhhhh
Q psy2153 73 NKVWCGYKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKM 147 (325)
Q Consensus 73 ~~LW~g~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~ 147 (325)
..+.+-++|+|.|..+.|. +.++-|..+.-.+.-.-... ..+| .+..+..|++||...-+++..++..-.++.+
T Consensus 29 k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~-~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~ 107 (792)
T KOG1963|consen 29 KFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLI-VCSLDGTIRVWDWSDGELLKTFDNNLPVHAL 107 (792)
T ss_pred cEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEE-EEecCccEEEecCCCcEEEEEEecCCceeEE
Confidence 5789999999999999987 55555554333332222222 3455 7889999999999999999988877655443
No 233
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=44.58 E-value=91 Score=34.46 Aligned_cols=71 Identities=20% Similarity=0.200 Sum_probs=45.0
Q ss_pred eeeCCEEEEEEC-CeEEEEcCCCCc---eeEecCCCCCceeEEEE-----------------------eCCeEEEEEeCC
Q psy2153 69 AAVYNKVWCGYK-NKIHVVDPKSLK---SFDAHPRRESQVRQMTW-----------------------AGDGVWVSIRLD 121 (325)
Q Consensus 69 l~v~~~LW~g~g-nkI~VIn~~Tlk---sf~~~~~~~~~V~~Ma~-----------------------~G~GVWiS~~~s 121 (325)
+.++++|+.++. ++|+.||++|-| +|+.....+....+++. .+.-|++ -..+
T Consensus 191 lvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~-~T~D 269 (764)
T TIGR03074 191 LKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL-PTSD 269 (764)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE-ecCC
Confidence 467999999887 779999999984 23332221111111111 1223443 4458
Q ss_pred CeEEEEecCccceeeeeec
Q psy2153 122 STLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 122 s~IrL~ha~T~e~LqdIdI 140 (325)
..|...|++|.+.+.+++.
T Consensus 270 g~LiALDA~TGk~~W~fg~ 288 (764)
T TIGR03074 270 ARLIALDADTGKLCEDFGN 288 (764)
T ss_pred CeEEEEECCCCCEEEEecC
Confidence 8899999999999987543
No 234
>KOG0322|consensus
Probab=44.28 E-value=1.1e+02 Score=30.22 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=76.2
Q ss_pred eCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCC-CCCCCCCCeEEEcCCCC-CceeeeeeeCCEEEEEEC--CeEEEE
Q psy2153 13 KILDTALPPVHV--QGRVVCALADGSVAIFRRGPD-GQWDLSKYHTVTLGLPH-HSVRSLAAVYNKVWCGYK--NKIHVV 86 (325)
Q Consensus 13 kL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~-g~WD~~~~~~I~LG~~~-~PV~cml~v~~~LW~g~g--nkI~VI 86 (325)
..+.+|+++-|- .++=..|-++-+++.|.-+.+ |+ ++-.+.+++-+|. +-|| ...++++-+.-| .+|-|+
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs--lq~~~e~~lknpGv~gvr--IRpD~KIlATAGWD~RiRVy 278 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS--LQIRKEITLKNPGVSGVR--IRPDGKILATAGWDHRIRVY 278 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeeccccCc--ccccceEEecCCCccceE--EccCCcEEeecccCCcEEEE
Confidence 345688888885 333345555558999985433 32 4445666665543 1121 234778887655 779999
Q ss_pred cCCCCceeEecCCCCCceeEEEEeCC-eEEEEEeCCCeEEEEe
Q psy2153 87 DPKSLKSFDAHPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYN 128 (325)
Q Consensus 87 n~~Tlksf~~~~~~~~~V~~Ma~~G~-GVWiS~~~ss~IrL~h 128 (325)
+=+||+.+.+-.....-|++++-+.+ ++--+-+.+..|-||+
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 99999776664444478888888765 7888889999999997
No 235
>KOG0292|consensus
Probab=43.85 E-value=80 Score=35.77 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=74.5
Q ss_pred ceeeeEEeCCe--EEEEecCCcEEEEEcCCCCCCCCCCCeEE-EcCCCCCceeeeeeeCC-EEEEEECCe--EEEEcCCC
Q psy2153 17 TALPPVHVQGR--VVCALADGSVAIFRRGPDGQWDLSKYHTV-TLGLPHHSVRSLAAVYN-KVWCGYKNK--IHVVDPKS 90 (325)
Q Consensus 17 sVl~I~~~~~~--VfVgLANGtLaVF~R~~~g~WD~~~~~~I-~LG~~~~PV~cml~v~~-~LW~g~gnk--I~VIn~~T 90 (325)
.|-.|-++..| ++++|-+|.|-. ||..=..+| ....-..|||.+..+.. -++++-|+. |.|.|-++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQl--------WDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~ 82 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQL--------WDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT 82 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeee--------ehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence 45556666554 888999998654 543322121 11222379999999975 578877754 99999888
Q ss_pred Cc---eeEecCCCCCceeEEEEeCCeEE-EEEeCCCeEEEEecCccceeeee
Q psy2153 91 LK---SFDAHPRRESQVRQMTWAGDGVW-VSIRLDSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 91 lk---sf~~~~~~~~~V~~Ma~~G~GVW-iS~~~ss~IrL~ha~T~e~LqdI 138 (325)
.+ ++..|- .-|+...-....=| +|.+.+-|||+|+..+.+++.-.
T Consensus 83 rrclftL~GHl---DYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 83 RRCLFTLLGHL---DYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred ceehhhhcccc---ceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 74 233444 55665555556666 48888999999999999987644
No 236
>KOG0308|consensus
Probab=43.73 E-value=1.3e+02 Score=32.82 Aligned_cols=183 Identities=20% Similarity=0.252 Sum_probs=103.9
Q ss_pred eeeeEEe-CCeEEEEec-CCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-C-CEEEEEEC--CeEEEEcCCCC
Q psy2153 18 ALPPVHV-QGRVVCALA-DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-Y-NKVWCGYK--NKIHVVDPKSL 91 (325)
Q Consensus 18 Vl~I~~~-~~~VfVgLA-NGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~-~~LW~g~g--nkI~VIn~~Tl 91 (325)
|..|.++ +++-|++.+ |-+|-++.-++++.|..+ .||.-.-=|+|+... . +.|.+.-| .+||+.|-+++
T Consensus 76 VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s-----tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~ 150 (735)
T KOG0308|consen 76 VNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS-----TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTG 150 (735)
T ss_pred HhhHHhhcCCCceEEecCCceEEEeecccCcchhHh-----hhhcccchheeeeecccCceeEEecCCCccEEEEEccCc
Confidence 3444433 333555544 557888887776666543 356544569999884 3 45555444 56999987755
Q ss_pred -----ceeEecC------CCCCceeEEEEeCCe-EEEEEeCCCeEEEEecCccceeeeeecc-hhhhhhcccccccccce
Q psy2153 92 -----KSFDAHP------RRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIE-PYVSKMLGMYTFCSCVT 158 (325)
Q Consensus 92 -----ksf~~~~------~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~T~e~LqdIdIa-~~v~~~l~~~~~~~~~~ 158 (325)
.+|+--+ .+...|..+|-...| +.++-.....||+||..|.+.+.++-=- ..|.-+| -+-|.
T Consensus 151 ~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll-----~~dDG 225 (735)
T KOG0308|consen 151 TATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL-----VNDDG 225 (735)
T ss_pred chhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE-----EcCCC
Confidence 3442211 223567777766544 6666666777999999999998887621 1222222 01111
Q ss_pred eeccccccccccCccccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeCCe--eeEeCCCCcc
Q psy2153 159 IRTLLAETIISPFGWYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISSSR--LWIGTASGKA 230 (325)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~~~--LWiGTs~G~~ 230 (325)
.|. +.+++++ +|+-|++-+ -+|+++. -.|+.+ |=||.+..++ ++-|-..|-+
T Consensus 226 t~~-----------ls~sSDg-tIrlWdLgq--QrCl~T~-~vH~e~-----VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 226 TRL-----------LSASSDG-TIRLWDLGQ--QRCLATY-IVHKEG-----VWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred CeE-----------eecCCCc-eEEeeeccc--cceeeeE-EeccCc-----eEEEeeCCCcceEEecCCCCcE
Confidence 110 2344444 577787722 2455553 234432 4555555443 7778888864
No 237
>KOG0288|consensus
Probab=43.08 E-value=2.8e+02 Score=28.79 Aligned_cols=88 Identities=20% Similarity=0.358 Sum_probs=57.6
Q ss_pred CCCCCCC---eEEEcCCCCCceeeeeeeCC--EEE-EEECCeEEEEcCCCC---ceeEecCCC-CCceeEEEEeCCeEEE
Q psy2153 47 QWDLSKY---HTVTLGLPHHSVRSLAAVYN--KVW-CGYKNKIHVVDPKSL---KSFDAHPRR-ESQVRQMTWAGDGVWV 116 (325)
Q Consensus 47 ~WD~~~~---~~I~LG~~~~PV~cml~v~~--~LW-~g~gnkI~VIn~~Tl---ksf~~~~~~-~~~V~~Ma~~G~GVWi 116 (325)
.||.... ..+++|. -|+++....+ +|- |+-.|.+.+||..+. +.|.+.... .+-.+..+-+.++=++
T Consensus 326 fwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yv 402 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYV 402 (459)
T ss_pred EEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCcee
Confidence 4664444 3466664 6888866643 443 333466999999998 677664432 3446666666555444
Q ss_pred -EEeCCCeEEEEecCccceeee
Q psy2153 117 -SIRLDSTLRMYNAHTYQHLQD 137 (325)
Q Consensus 117 -S~~~ss~IrL~ha~T~e~Lqd 137 (325)
+-+.++.|++|+..|.++-.-
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~~ 424 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEKV 424 (459)
T ss_pred eeccCCCcEEEEEccCceEEEE
Confidence 456689999999999886443
No 238
>KOG1645|consensus
Probab=42.96 E-value=50 Score=34.07 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=83.7
Q ss_pred EEEEECCeEEEEcCCCCceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhccccc
Q psy2153 75 VWCGYKNKIHVVDPKSLKSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYT 152 (325)
Q Consensus 75 LW~g~gnkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~ 152 (325)
+.=|.| |++|++.++|+.+.-+.+...|+.|+-+ ..|+-...+.+-.|.++|.+|--..+..+.-. ++
T Consensus 169 ~lpGvG--v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~----~~---- 238 (463)
T KOG1645|consen 169 LLPGVG--VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN----QI---- 238 (463)
T ss_pred cCCccc--eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccC----Cc----
Confidence 444677 9999999998888888889999988876 56788899999999999999988887776542 22
Q ss_pred ccccc-----eeeccccccccccCccccCCCccccccccc-cccceee-eeccCCC
Q psy2153 153 FCSCV-----TIRTLLAETIISPFGWYANNPADILESFTV-CQSHLLC-IASVPGT 201 (325)
Q Consensus 153 ~~~~~-----~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~-~~~~~~c-i~~vp~~ 201 (325)
-+|- ..---.||.=..-+..|..+|.....+|.. ...++.| |+.+++.
T Consensus 239 -wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n 293 (463)
T KOG1645|consen 239 -WSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPN 293 (463)
T ss_pred -eeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcc
Confidence 1110 000112333334455799999999998854 6677776 6778775
No 239
>KOG1587|consensus
Probab=42.82 E-value=1.9e+02 Score=30.84 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=71.2
Q ss_pred ceeeeEEe---CCeEEEEecCCcEEEEEcCCCCCCCC----CCCeEEEcCCCCCceeeeeeeC--CEEEEEECCe-EEEE
Q psy2153 17 TALPPVHV---QGRVVCALADGSVAIFRRGPDGQWDL----SKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNK-IHVV 86 (325)
Q Consensus 17 sVl~I~~~---~~~VfVgLANGtLaVF~R~~~g~WD~----~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnk-I~VI 86 (325)
.++++.+. .++.+||.-.|.|..=.|..- .=.. ..+....+|. .||+++.... .++..++++- |.+.
T Consensus 349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~-~~~~~~~~~~~~~~~~h~--g~v~~v~~nPF~~k~fls~gDW~vriW 425 (555)
T KOG1587|consen 349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY-TPAPEVSYKGHSTFITHI--GPVYAVSRNPFYPKNFLSVGDWTVRIW 425 (555)
T ss_pred ceeeEeeccCCCceEEEEcCCcEEEEEeccCC-cccccccccccccccccC--cceEeeecCCCccceeeeeccceeEec
Confidence 56777764 778999999999888444321 1111 1122233444 6888876664 6777777754 7777
Q ss_pred cCCCC----ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEec
Q psy2153 87 DPKSL----KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNA 129 (325)
Q Consensus 87 n~~Tl----ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha 129 (325)
..+.. -+|+-+. ..|+..+|+ .-.|+.+.+.++.|.+||-
T Consensus 426 s~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDL 471 (555)
T KOG1587|consen 426 SEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDL 471 (555)
T ss_pred cccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhh
Confidence 76633 2344444 559999998 4469999999999999984
No 240
>KOG1275|consensus
Probab=42.35 E-value=83 Score=35.67 Aligned_cols=114 Identities=17% Similarity=0.356 Sum_probs=75.2
Q ss_pred CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-CeEEEEcCCCC---ceeEecCCCC
Q psy2153 26 GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-NKIHVVDPKSL---KSFDAHPRRE 101 (325)
Q Consensus 26 ~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-nkI~VIn~~Tl---ksf~~~~~~~ 101 (325)
.-++.||.+ .++.|+-+.. ...+...++.+. |+=|-.-+.-+.||.. +.|++-|+++. |+|.+|+
T Consensus 149 ~~i~Gg~Q~-~li~~Dl~~~-----~e~r~~~v~a~~--v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs--- 217 (1118)
T KOG1275|consen 149 TLIMGGLQE-KLIHIDLNTE-----KETRTTNVSASG--VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS--- 217 (1118)
T ss_pred ceeecchhh-heeeeecccc-----eeeeeeeccCCc--eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccc---
Confidence 345556666 6777775443 233455666632 5555555566788887 56999999999 8999999
Q ss_pred CceeEEEEeCCeEE---EEEe-----CCCeEEEEecCccceeeeeecc--hhhhhhccc
Q psy2153 102 SQVRQMTWAGDGVW---VSIR-----LDSTLRMYNAHTYQHLQDVDIE--PYVSKMLGM 150 (325)
Q Consensus 102 ~~V~~Ma~~G~GVW---iS~~-----~ss~IrL~ha~T~e~LqdIdIa--~~v~~~l~~ 150 (325)
.+|..|-+.|.-+- +|.| .+..|.+||-.+++.|--|.+. |...++++-
T Consensus 218 ~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps 276 (1118)
T KOG1275|consen 218 GSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS 276 (1118)
T ss_pred cceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence 56777666653211 2333 3778999999999999887753 444444433
No 241
>PHA02713 hypothetical protein; Provisional
Probab=42.15 E-value=3.8e+02 Score=28.21 Aligned_cols=105 Identities=10% Similarity=0.164 Sum_probs=57.2
Q ss_pred eeeEEeCCeEEEEec-CC-----cEEEEEcCCCCCCCCCCCeEEEcCCCCCce--eeeeeeCCEEEEEEC----------
Q psy2153 19 LPPVHVQGRVVCALA-DG-----SVAIFRRGPDGQWDLSKYHTVTLGLPHHSV--RSLAAVYNKVWCGYK---------- 80 (325)
Q Consensus 19 l~I~~~~~~VfVgLA-NG-----tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV--~cml~v~~~LW~g~g---------- 80 (325)
.+....++++||-=. +| ++-.|+... +.|..-.+ ++ .|. .++..+++++++--|
T Consensus 345 ~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~-~~W~~~~~--mp-----~~r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQNGTNVERTIECYTMGD-DKWKMLPD--MP-----IALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred eeEEEECCEEEEECCcCCCCCCceEEEEECCC-CeEEECCC--CC-----cccccccEEEECCEEEEEeCCCcccccccc
Confidence 355667888877322 22 366777544 35753221 11 111 145677889987443
Q ss_pred ---------------CeEEEEcCCCCceeEecCCCCCce-eEEEEeCCeEEEEEeCC------CeEEEEecCc
Q psy2153 81 ---------------NKIHVVDPKSLKSFDAHPRRESQV-RQMTWAGDGVWVSIRLD------STLRMYNAHT 131 (325)
Q Consensus 81 ---------------nkI~VIn~~Tlksf~~~~~~~~~V-~~Ma~~G~GVWiS~~~s------s~IrL~ha~T 131 (325)
+++.+.||++-+.-.+.+-..... ..++..++-+++.--.+ +.+..||.+|
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 458888888875444433211111 24666777777664321 3456677666
No 242
>KOG0771|consensus
Probab=41.49 E-value=2.6e+02 Score=28.78 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=85.7
Q ss_pred CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccc
Q psy2153 81 NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCV 157 (325)
Q Consensus 81 nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~ 157 (325)
..+-|++-.+| ..+.+|+ ..|.+|.-+.+|-.++--.....++|++.+.-++|.---.. ..|.+..|-
T Consensus 166 g~lRv~~~Ps~~t~l~e~~~~---~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~------k~~~~~~cR 236 (398)
T KOG0771|consen 166 GTLRVWEWPSMLTILEEIAHH---AEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFS------KDEMFSSCR 236 (398)
T ss_pred ceEEEEecCcchhhhhhHhhc---CccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcc------cchhhhhce
Confidence 45777773333 3444555 78999999999955544444499999999998777654211 113345553
Q ss_pred eeeccccccccccCc--cccCCCccccccccccccceeeeeccCCCCCCCcceeEEEEEEeeC--CeeeEeCCCCccccc
Q psy2153 158 TIRTLLAETIISPFG--WYANNPADILESFTVCQSHLLCIASVPGTGKLGFSFVRITALLISS--SRLWIGTASGKAPSG 233 (325)
Q Consensus 158 ~~~~~~~~~~~~~~~--~~~~~p~~~~~~f~~~~~~~~ci~~vp~~~~~~~~~~riTsLl~~~--~~LWiGTs~G~~~~~ 233 (325)
.. .|... ++- -....|.+.++.+.+=--+-- +.++...+ -+..--||||-+.. ..+=+||..|.+..
T Consensus 237 F~----~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~--~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dGsVai- 307 (398)
T KOG0771|consen 237 FS----VDNAQ-ETLRLAASQFPGGGVRLCDISLWSGS--NFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDGSVAI- 307 (398)
T ss_pred ec----ccCCC-ceEEEEEecCCCCceeEEEeeeeccc--cccchhhh-hhccCcceeEEEcCCCcEEEEeccCCcEEE-
Confidence 11 22221 111 123344444433211000000 00011111 11233577777654 46888999997522
Q ss_pred eeeeecCCccccCCCccccccccccceeeccccCCceeEEEeecC
Q psy2153 234 VRVFSEPATSVITPGTFIPYCSMAQAQLSFHGHRDAVKFFVSVPG 278 (325)
Q Consensus 234 ~~~~~~p~~~~~t~~~~~p~~~~~~~~~s~hgH~g~V~Fl~~v~~ 278 (325)
+-. . +|...|.+.++|-+-|.=|.=.|.
T Consensus 308 ---~~~------~--------~lq~~~~vk~aH~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 308 ---YDA------K--------SLQRLQYVKEAHLGFVTGLTFSPD 335 (398)
T ss_pred ---EEe------c--------eeeeeEeehhhheeeeeeEEEcCC
Confidence 110 1 234567888999996666655553
No 243
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=41.45 E-value=1.5e+02 Score=29.82 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=80.2
Q ss_pred CCccceeeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCceeeeee---eCCE-EEEEEC
Q psy2153 6 PTPYPLNKILDTALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHSVRSLAA---VYNK-VWCGYK 80 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~PV~cml~---v~~~-LW~g~g 80 (325)
-|.+.+|.+|+=++-.=.-+.+.+.-++||+++-+.-+++|.-- .+.=.+=. ...|+-.--. .+++ +|..+.
T Consensus 128 ~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~---~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~ 204 (342)
T PF06433_consen 128 KKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA---QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYE 204 (342)
T ss_dssp TEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEE---EEEEEESSTTTS-B-S--EEETTTTEEEEEBTT
T ss_pred CceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEe---EeeccccCCCCcccccccceECCCCeEEEEecC
Confidence 46678888888776666678888999999999999998888532 11112222 2244433222 2344 578999
Q ss_pred CeEEEEcCCCC-----ce--------------------eEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCcccee
Q psy2153 81 NKIHVVDPKSL-----KS--------------------FDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHL 135 (325)
Q Consensus 81 nkI~VIn~~Tl-----ks--------------------f~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~L 135 (325)
++|+-++-..- ++ +..|.....--..| ..| +-|-=...+..|=+||..|.|.+
T Consensus 205 G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM-h~g-~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 205 GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM-HQG-GEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE-EE---TT-TTS-EEEEEEEETTTTEEE
T ss_pred CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe-cCC-CCCCccCCceEEEEEECCCCeEE
Confidence 99999875443 22 33333322222233 222 22211112334779999999999
Q ss_pred eeeecchhhh
Q psy2153 136 QDVDIEPYVS 145 (325)
Q Consensus 136 qdIdIa~~v~ 145 (325)
..|+++..+.
T Consensus 283 ~Ri~l~~~~~ 292 (342)
T PF06433_consen 283 ARIPLEHPID 292 (342)
T ss_dssp EEEEEEEEES
T ss_pred EEEeCCCccc
Confidence 9999987643
No 244
>PHA03098 kelch-like protein; Provisional
Probab=41.45 E-value=4e+02 Score=27.18 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=55.7
Q ss_pred eeeEEeCCeEEEEec------CCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC--------CeEE
Q psy2153 19 LPPVHVQGRVVCALA------DGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK--------NKIH 84 (325)
Q Consensus 19 l~I~~~~~~VfVgLA------NGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g--------nkI~ 84 (325)
.+.+..++++||-=. ..++-+|+... +.|..-.+ +..|.. =.++..+++++|+.-| +.+.
T Consensus 336 ~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~~----lp~~r~-~~~~~~~~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 336 PGVTVFNNRIYVIGGIYNSISLNTVESWKPGE-SKWREEPP----LIFPRY-NPCVVNVNNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred ceEEEECCEEEEEeCCCCCEecceEEEEcCCC-CceeeCCC----cCcCCc-cceEEEECCEEEEECCcCCCCcccceEE
Confidence 445566777776322 12466776543 56753322 111111 1245667899998655 5689
Q ss_pred EEcCCCCceeEecCCC-CCceeEEEEeCCeEEEEEeC--------CCeEEEEecCcc
Q psy2153 85 VVDPKSLKSFDAHPRR-ESQVRQMTWAGDGVWVSIRL--------DSTLRMYNAHTY 132 (325)
Q Consensus 85 VIn~~Tlksf~~~~~~-~~~V~~Ma~~G~GVWiS~~~--------ss~IrL~ha~T~ 132 (325)
++|+++.+.-...+-+ ...-.+++..++.+++.--. -..+..||.+|.
T Consensus 410 ~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 410 CFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 9999887433222211 11122455556666654321 122666666554
No 245
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=41.42 E-value=87 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=38.0
Q ss_pred CceeeeeeeC---------CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCC------eEEEEEeCCCe
Q psy2153 63 HSVRSLAAVY---------NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGD------GVWVSIRLDST 123 (325)
Q Consensus 63 ~PV~cml~v~---------~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~------GVWiS~~~ss~ 123 (325)
..|+||..+. ++|-+|..++ |||+|++.. +++.... -. ..|...|. -+.+++|++..
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps---vP-v~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS---VP-VFISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC---Cc-eEEEEEeeeeccceEEEEEeCCCEE
Confidence 4589998873 5899999977 999999998 4444433 22 24555442 26677776643
No 246
>KOG0321|consensus
Probab=41.37 E-value=2.5e+02 Score=30.65 Aligned_cols=81 Identities=11% Similarity=0.089 Sum_probs=45.8
Q ss_pred eeeCCCceeeeEEeCCeEEEEe--cCCcEEEEEcCCCC-CCCCCCCeEEEcCCC---CCceeeeeee--CCEEEEEEC-C
Q psy2153 11 LNKILDTALPPVHVQGRVVCAL--ADGSVAIFRRGPDG-QWDLSKYHTVTLGLP---HHSVRSLAAV--YNKVWCGYK-N 81 (325)
Q Consensus 11 ~IkL~dsVl~I~~~~~~VfVgL--ANGtLaVF~R~~~g-~WD~~~~~~I~LG~~---~~PV~cml~v--~~~LW~g~g-n 81 (325)
.-.+..+|+-+++.|+..+|.- +||.+-||+-...- --..++.....+-.+ ..-+.||..= +..|++.|- |
T Consensus 214 s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~ 293 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN 293 (720)
T ss_pred cCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC
Confidence 3344567888888888766643 57788777732110 000111111111111 1124454333 479999998 5
Q ss_pred eEEEEcCCCC
Q psy2153 82 KIHVVDPKSL 91 (325)
Q Consensus 82 kI~VIn~~Tl 91 (325)
+||..|+.++
T Consensus 294 sIy~ynm~s~ 303 (720)
T KOG0321|consen 294 SIYFYNMRSL 303 (720)
T ss_pred cEEEEecccc
Confidence 5999999998
No 247
>KOG0269|consensus
Probab=40.93 E-value=62 Score=35.78 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=64.9
Q ss_pred CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC---CEEEEEECCe-EEEEcCCCCc---eeEec
Q psy2153 25 QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY---NKVWCGYKNK-IHVVDPKSLK---SFDAH 97 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~---~~LW~g~gnk-I~VIn~~Tlk---sf~~~ 97 (325)
+|.++.+-.||.|.||+-+..+ .+.....+-.-...+.|+.... +-|--|+++. |.++|.+.-+ +|-..
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~----rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n 175 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSI----RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN 175 (839)
T ss_pred hhhheeecCCCcEEEEecCccc----cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc
Confidence 5667888888888888755432 2222112222224566766553 4566688865 9999988773 44444
Q ss_pred CCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccc
Q psy2153 98 PRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 98 ~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
.++-+-|..|-.. ...+.|...+++|+|||...-+
T Consensus 176 SESiRDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp~ 210 (839)
T KOG0269|consen 176 SESIRDVKFSPGY-GNKFASIHDSGYLQLWDLRQPD 210 (839)
T ss_pred chhhhceeeccCC-CceEEEecCCceEEEeeccCch
Confidence 4333334433333 5689999999999999976443
No 248
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=40.60 E-value=4e+02 Score=26.91 Aligned_cols=132 Identities=18% Similarity=0.210 Sum_probs=80.4
Q ss_pred ccceeeCCCceeeeEE---eCCeEEEEecC-CcEEEEEcCCCCC-CCCCCCeEEEcCC-CC----Cc-eee--eeeeCCE
Q psy2153 8 PYPLNKILDTALPPVH---VQGRVVCALAD-GSVAIFRRGPDGQ-WDLSKYHTVTLGL-PH----HS-VRS--LAAVYNK 74 (325)
Q Consensus 8 ~L~~IkL~dsVl~I~~---~~~~VfVgLAN-GtLaVF~R~~~g~-WD~~~~~~I~LG~-~~----~P-V~c--ml~v~~~ 74 (325)
.|.+..++.+-.|=+. .+..||+|.=+ |.|.||..+++|. |.. .......|. |+ +| +.+ +.+-+.-
T Consensus 80 ~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~-v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 80 FLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV-VQVVKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred EeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccc-eeeeecCCCCCCccccCCccceeeeCCCCCE
Confidence 3444555554433222 23467777644 6899999988875 322 112233343 11 22 222 3333456
Q ss_pred EEEEE--CCeEEEEcCCCC-----ceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCc----cceeeeeecc
Q psy2153 75 VWCGY--KNKIHVVDPKSL-----KSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHT----YQHLQDVDIE 141 (325)
Q Consensus 75 LW~g~--gnkI~VIn~~Tl-----ksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T----~e~LqdIdIa 141 (325)
||+-. .+||++++.+.. ....+ .++.--+||+-. |.-.++....+++|.+|.... ++.||.|+.-
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEEeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 66543 278999988754 22333 456778898886 555899999999999998766 5677777766
Q ss_pred h
Q psy2153 142 P 142 (325)
Q Consensus 142 ~ 142 (325)
|
T Consensus 237 P 237 (346)
T COG2706 237 P 237 (346)
T ss_pred c
Confidence 5
No 249
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=39.39 E-value=83 Score=20.68 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=26.5
Q ss_pred eEEEEEeCCCeEEEEecCccceeeeeecchhh
Q psy2153 113 GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYV 144 (325)
Q Consensus 113 GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v 144 (325)
-|++. ..+..|+.+|++|.|.+-+++..+.+
T Consensus 2 ~v~~~-~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 2 RVYVG-TPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp EEEEE-TTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred EEEEe-CCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 35656 88999999999999999999988754
No 250
>KOG0290|consensus
Probab=38.73 E-value=4.2e+02 Score=26.60 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=72.6
Q ss_pred ceeeCCCceeeeEEeC--CeEEEEe-cCCcEEEEEcCCCCCCCCCCCeEEEcC-CCCCceeeeeeeC-C----EEEEEEC
Q psy2153 10 PLNKILDTALPPVHVQ--GRVVCAL-ADGSVAIFRRGPDGQWDLSKYHTVTLG-LPHHSVRSLAAVY-N----KVWCGYK 80 (325)
Q Consensus 10 ~~IkL~dsVl~I~~~~--~~VfVgL-ANGtLaVF~R~~~g~WD~~~~~~I~LG-~~~~PV~cml~v~-~----~LW~g~g 80 (325)
+.|-=...|..|.+.+ -.|||+. |||++-+|+-.. ++....|=-+ .|..|+-.|..-. | ...+.-.
T Consensus 191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~-----leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS 265 (364)
T KOG0290|consen 191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS-----LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDS 265 (364)
T ss_pred EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc-----cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCC
Confidence 4444456788999887 6799987 799999998322 2222223222 2235554443332 1 2345667
Q ss_pred CeEEEEcCCCC----ceeEecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCcc
Q psy2153 81 NKIHVVDPKSL----KSFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 81 nkI~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~ 132 (325)
++|.|+|.+.= -.+.-|. ..|+.++|+. ...-.+.-.++..-+||..+-
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred ceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 89999997654 3344444 7788888862 235567778899999987654
No 251
>KOG0771|consensus
Probab=38.28 E-value=2.4e+02 Score=28.99 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=73.2
Q ss_pred CCCCCC-ccceeeCCCceeeeEEe-CCeEEEEecCCcEEEEEcCCCCCC----------CCCCCeEEEcCCCCCceeeee
Q psy2153 2 EYPHPT-PYPLNKILDTALPPVHV-QGRVVCALADGSVAIFRRGPDGQW----------DLSKYHTVTLGLPHHSVRSLA 69 (325)
Q Consensus 2 ~~~~~~-~L~~IkL~dsVl~I~~~-~~~VfVgLANGtLaVF~R~~~g~W----------D~~~~~~I~LG~~~~PV~cml 69 (325)
|+|+-+ .|-+++=...|-+|-+. ++++.|.+.--..-|++-+.+-.| .++..+....+. .+
T Consensus 172 ~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~--~~----- 244 (398)
T KOG0771|consen 172 EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNA--QE----- 244 (398)
T ss_pred ecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhceecccCC--Cc-----
Confidence 445433 34556666789999986 555888877768888886654322 222222222221 11
Q ss_pred eeCCEEEE-EECCe---EE-----EEcCC-CCceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeee
Q psy2153 70 AVYNKVWC-GYKNK---IH-----VVDPK-SLKSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 70 ~v~~~LW~-g~gnk---I~-----VIn~~-Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdI 138 (325)
.|.+ +.+++ |. +-+-. .++.+..-. ....|++|+++.+|=++++-. +..|-+|+++++|.+|-+
T Consensus 245 ----~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~-~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~v 319 (398)
T KOG0771|consen 245 ----TLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIK-RFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYV 319 (398)
T ss_pred ----eEEEEEecCCCCceeEEEeeeeccccccchhhhhh-ccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEee
Confidence 2221 12111 11 11111 112222222 235799999999998888864 899999999999998866
Q ss_pred ecc
Q psy2153 139 DIE 141 (325)
Q Consensus 139 dIa 141 (325)
-=+
T Consensus 320 k~a 322 (398)
T KOG0771|consen 320 KEA 322 (398)
T ss_pred hhh
Confidence 443
No 252
>KOG2066|consensus
Probab=38.26 E-value=1.7e+02 Score=32.56 Aligned_cols=124 Identities=14% Similarity=0.155 Sum_probs=75.1
Q ss_pred eeCCCceeeeEEeCCeEEEEecCCcEEEEEcCCC-------------CC----------------CCCCCCeEEEcCCCC
Q psy2153 12 NKILDTALPPVHVQGRVVCALADGSVAIFRRGPD-------------GQ----------------WDLSKYHTVTLGLPH 62 (325)
Q Consensus 12 IkL~dsVl~I~~~~~~VfVgLANGtLaVF~R~~~-------------g~----------------WD~~~~~~I~LG~~~ 62 (325)
+-..|++.|..+.+..++.|.-+|.|.+|..+.. |. -+.++-+....+
T Consensus 36 ~~~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~--- 112 (846)
T KOG2066|consen 36 FLQNDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDFK--- 112 (846)
T ss_pred HHhhhHHHHHHhhcceeeeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEecC---
Confidence 3445788888888888888888888888775422 10 011111222222
Q ss_pred CceeeeeeeCC------EEEEEECCeEEEEcCCCC----ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCcc
Q psy2153 63 HSVRSLAAVYN------KVWCGYKNKIHVVDPKSL----KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTY 132 (325)
Q Consensus 63 ~PV~cml~v~~------~LW~g~gnkI~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~ 132 (325)
.|+.......+ +-.++-|.+=.|+.-+.+ ++. +.++.+..|.++.|.| =.||..++-=|++||+.+.
T Consensus 113 rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g--~lIAWand~Gv~vyd~~~~ 189 (846)
T KOG2066|consen 113 RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG--NLIAWANDDGVKVYDTPTR 189 (846)
T ss_pred CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccce-eeecCccceEEEEecC--cEEEEecCCCcEEEecccc
Confidence 35555444433 122222222155555555 233 3455678899888884 5678889999999999999
Q ss_pred ceeeeeecc
Q psy2153 133 QHLQDVDIE 141 (325)
Q Consensus 133 e~LqdIdIa 141 (325)
+.|..|--.
T Consensus 190 ~~l~~i~~p 198 (846)
T KOG2066|consen 190 QRLTNIPPP 198 (846)
T ss_pred ceeeccCCC
Confidence 998876544
No 253
>KOG1538|consensus
Probab=38.07 E-value=88 Score=34.49 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=44.6
Q ss_pred CCEEEEEECCeEEEEcCCCC---ceeEecCCCCCceeEEEEeCCe-EEEEEeCCCeEEEEecC
Q psy2153 72 YNKVWCGYKNKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGDG-VWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 72 ~~~LW~g~gnkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha~ 130 (325)
+.+|-.|.||++++.|+... +.+..|. ..|.|.|++.+| -+-|-..+-.|.+|..+
T Consensus 24 GsqL~lAAg~rlliyD~ndG~llqtLKgHK---DtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 24 GTQLILAAGSRLLVYDTSDGTLLQPLKGHK---DTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred CceEEEecCCEEEEEeCCCccccccccccc---ceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 56899999999999999876 7778888 679999999777 55555566667777654
No 254
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=37.24 E-value=3.3e+02 Score=28.11 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=10.0
Q ss_pred eEEEEEEeeCCeeeEeCCCCc
Q psy2153 209 VRITALLISSSRLWIGTASGK 229 (325)
Q Consensus 209 ~riTsLl~~~~~LWiGTs~G~ 229 (325)
+++...+.-+++||.-...+.
T Consensus 235 ~yllgy~~~~~~ly~~Dr~~~ 255 (443)
T PF04053_consen 235 LYLLGYLPKENRLYLIDRDGN 255 (443)
T ss_dssp -EEEEEETTTTEEEEE-TT--
T ss_pred eEEEEEEccCCEEEEEECCCC
Confidence 444445555567776666654
No 255
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=34.56 E-value=69 Score=32.15 Aligned_cols=22 Identities=14% Similarity=0.489 Sum_probs=19.6
Q ss_pred CCeEEEEecCccceeeeeecch
Q psy2153 121 DSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 121 ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
.-.|.+||+.|+++..||.|-+
T Consensus 66 tDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 66 TDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEETT
T ss_pred eeEEEEEecCcCcccceEecCC
Confidence 3459999999999999999976
No 256
>KOG0300|consensus
Probab=34.34 E-value=1.5e+02 Score=30.07 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=40.8
Q ss_pred CEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeE-EEEeCCeEEEEEeCCCeEEEEecCccceeeeeecch
Q psy2153 73 NKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQ-MTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 73 ~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~-Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
++.--|+.++ -.+.|.+|. +.+.-|. +..+| -++..+-+-+.-+++++.||||-. +-+|.+++..
T Consensus 285 ~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd---~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQ 354 (481)
T KOG0300|consen 285 QQMVTASWDRTANLWDVETGEVVNILTGHD---SELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQ 354 (481)
T ss_pred ceeeeeeccccceeeeeccCceeccccCcc---hhccccccCCcceEEEEeccCceeEeccch--hhcceeeeec
Confidence 3444444444 334455554 4444443 44443 333456677788999999999987 8899998754
No 257
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=34.13 E-value=3.8e+02 Score=26.24 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=38.8
Q ss_pred eeeEE-eCCeEEEEec------------CC-cEEEEEc-CCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeE
Q psy2153 19 LPPVH-VQGRVVCALA------------DG-SVAIFRR-GPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKI 83 (325)
Q Consensus 19 l~I~~-~~~~VfVgLA------------NG-tLaVF~R-~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI 83 (325)
..|.. .++++||+-. .| +|.+++. +.+|.-| ..+++.=+. .-.+.|....+.||+++..+|
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d--~~~vfa~~l--~~p~Gi~~~~~GlyV~~~~~i 92 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD--KSNVFAEEL--SMVTGLAVAVGGVYVATPPDI 92 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc--eeEEeecCC--CCccceeEecCCEEEeCCCeE
Confidence 34444 5689999953 34 8888873 3455422 223332232 223566666555999999999
Q ss_pred EEE
Q psy2153 84 HVV 86 (325)
Q Consensus 84 ~VI 86 (325)
+.+
T Consensus 93 ~~~ 95 (367)
T TIGR02604 93 LFL 95 (367)
T ss_pred EEE
Confidence 877
No 258
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=33.96 E-value=70 Score=20.49 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred CceeeeEEeCCeEEEEecCCcEEEEE
Q psy2153 16 DTALPPVHVQGRVVCALADGSVAIFR 41 (325)
Q Consensus 16 dsVl~I~~~~~~VfVgLANGtLaVF~ 41 (325)
..|.+|.-.++.|.|+.+.+-|-+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 35889999999999999999999883
No 259
>KOG1587|consensus
Probab=33.77 E-value=1.2e+02 Score=32.32 Aligned_cols=39 Identities=10% Similarity=0.025 Sum_probs=30.0
Q ss_pred CccceeeCCCceeeeEEe---CCeEEEEecCCcEEEEEcCCC
Q psy2153 7 TPYPLNKILDTALPPVHV---QGRVVCALADGSVAIFRRGPD 45 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~---~~~VfVgLANGtLaVF~R~~~ 45 (325)
++=....=++.|+|++++ .+.+..|+-||+|++++-.+.
T Consensus 234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~ 275 (555)
T KOG1587|consen 234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKG 275 (555)
T ss_pred CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCC
Confidence 333445556799999985 788999999999999985443
No 260
>PRK02888 nitrous-oxide reductase; Validated
Probab=33.73 E-value=2.6e+02 Score=30.44 Aligned_cols=117 Identities=9% Similarity=-0.005 Sum_probs=68.7
Q ss_pred CCccceeeCCCcee--eeEEeCCeEEEEecCC----cEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEE
Q psy2153 6 PTPYPLNKILDTAL--PPVHVQGRVVCALADG----SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGY 79 (325)
Q Consensus 6 ~~~L~~IkL~dsVl--~I~~~~~~VfVgLANG----tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~ 79 (325)
.+..|+|.++..-. .+-+..+++|+..-|. ++....++. ..+.+.+.- .-+..+..-++..|.+
T Consensus 225 meV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e-------~d~~vvfni--~~iea~vkdGK~~~V~- 294 (635)
T PRK02888 225 MEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE-------RDWVVVFNI--ARIEEAVKAGKFKTIG- 294 (635)
T ss_pred ceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc-------CceEEEEch--HHHHHhhhCCCEEEEC-
Confidence 35667777765321 2223455777776332 455554321 114444443 1233334445677774
Q ss_pred CCeEEEEcCCC-----C---ceeEecCCCCCceeEEEE--eCCeEEEEEeCCCeEEEEecCccceee
Q psy2153 80 KNKIHVVDPKS-----L---KSFDAHPRRESQVRQMTW--AGDGVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 80 gnkI~VIn~~T-----l---ksf~~~~~~~~~V~~Ma~--~G~GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
+|+|.|||+.+ . ..+.+.. ..-.|.. +|..++++-..|+++-++|.++++-+-
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGK----sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPK----NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCC----CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 89999999998 3 2223322 2233443 466788888899999999999988643
No 261
>KOG1896|consensus
Probab=33.67 E-value=2.4e+02 Score=33.14 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCCccceeeCCC--ceeeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCe
Q psy2153 5 HPTPYPLNKILD--TALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNK 82 (325)
Q Consensus 5 ~~~~L~~IkL~d--sVl~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnk 82 (325)
|.+.|+.|+... .|-.-.-.+-+|.|--++|.++.|++..+ .+.+-++.|.++ |.+.+ .+..-..+.
T Consensus 614 ~~r~lq~i~fd~~~~vv~~sv~dpyv~v~~~~g~i~~~~l~~~-------s~rl~~~~~~s~--~~~sv--~~~~dlsg~ 682 (1366)
T KOG1896|consen 614 DLRMLQRIPFDSGAIVVQTSVADPYVAVRSSEGRITLYDLEEK-------SHRLALHDPMSF--KVVSV--SLPADLSGM 682 (1366)
T ss_pred cchheeEeccccCCcEEEEeccCceEEEEEcCCceEEEEeccc-------cchhhccCcccc--eeEEE--echhhhccc
Confidence 577888888776 77777777889999999999999998654 233445543211 11111 111112222
Q ss_pred EEEEcCCCCceeEecCCCC-----CceeEEEEeCCe--------EEE-EEeCCCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 83 IHVVDPKSLKSFDAHPRRE-----SQVRQMTWAGDG--------VWV-SIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 83 I~VIn~~Tlksf~~~~~~~-----~~V~~Ma~~G~G--------VWi-S~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
+.++..-++|.+++..+.. .... +.+++.- .|+ .++.++++..|+-..++++.++|-...-.+.|
T Consensus 683 f~~~s~l~~k~~~~~gr~~~~~~~~~~~-~kv~~~egg~~~~~~~~~~~~~e~g~leiy~~pd~~lVf~v~~f~~~~~~L 761 (1366)
T KOG1896|consen 683 FTTLSDLSLKGNEANGRSSEAEGLQSLP-CKVDDEEGGSPEQEPYWCVFVTESGTLEIYALPDFDLVFEVDMFDTGNRVL 761 (1366)
T ss_pred eEEEeeecccCcccccccccccccccCC-ccccCCCCCCcccCceEEEEEcCCCceEEEccCCcceEEEeeccCCCcceE
Confidence 3333311223222222111 1111 2222111 554 55679999999999999999999877666665
No 262
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=33.66 E-value=76 Score=33.07 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=60.6
Q ss_pred CCCCCccceeeCCC---ceeeeEEe----CCeEEEEecCC-cEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCE
Q psy2153 3 YPHPTPYPLNKILD---TALPPVHV----QGRVVCALADG-SVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNK 74 (325)
Q Consensus 3 ~~~~~~L~~IkL~d---sVl~I~~~----~~~VfVgLANG-tLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~ 74 (325)
+..-|+++.|.|++ .++.|.+. +++=|||.|=+ +|..|.|+.+|.|..+ ++|.+.. .|+..-..
T Consensus 229 ~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~--kVi~ip~--~~v~~~~l---- 300 (461)
T PF05694_consen 229 WSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE--KVIDIPA--KKVEGWIL---- 300 (461)
T ss_dssp TTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE--EEEEE----EE--SS------
T ss_pred CCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee--EEEECCC--cccCcccc----
Confidence 34567899999995 78888874 55677776643 7888888888999754 5788865 33321100
Q ss_pred EEEEECCeEEEEcCCCCceeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccc
Q psy2153 75 VWCGYKNKIHVVDPKSLKSFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 75 LW~g~gnkI~VIn~~Tlksf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e 133 (325)
++-+|.|.+-+ .-|+.+..+ ...+|+|.=...-||.||...-.
T Consensus 301 -------------p~ml~~~~~~P---~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 301 -------------PEMLKPFGAVP---PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --------------GGGGGG-EE---------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred -------------cccccccccCC---CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 11136676666 567765554 56799999999999999887644
No 263
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=33.45 E-value=4.4e+02 Score=25.29 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=67.5
Q ss_pred ceeeeEEe----CCeEEEEecC-Cc-EEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee-CCEEEEEECCeEEEEcCC
Q psy2153 17 TALPPVHV----QGRVVCALAD-GS-VAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV-YNKVWCGYKNKIHVVDPK 89 (325)
Q Consensus 17 sVl~I~~~----~~~VfVgLAN-Gt-LaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v-~~~LW~g~gnkI~VIn~~ 89 (325)
++..+.+. +.+|+||... |. +.=|+-.-...-|..-+.... +....|+ ++..+ ++.+-....+..+.+|..
T Consensus 153 ~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~-~~~~~p~-~i~~l~~~e~Llc~~~~~v~Vn~~ 230 (302)
T smart00036 153 PVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSE-ETSLKPI-SVVQVPRDEFLLCYDEFGVFVNLY 230 (302)
T ss_pred cceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccc-ccccCce-EEEEECCCeEEEEECcEEEEEeCC
Confidence 55555554 5699999996 53 333321101111211111111 1101455 44445 577888888888888887
Q ss_pred C-C--ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 90 S-L--KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 90 T-l--ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
- - +..+..= +.....++.....++ ++. ...|++++.+|.+.+|+|.-
T Consensus 231 G~~~~r~~~l~w--~~~p~~~~~~~pyll-~~~-~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 231 GKRRSRNPILHW--EFMPESFAYHSPYLL-AFH-DNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred CCccccceEEEc--CCcccEEEEECCEEE-EEc-CCcEEEEECCCCceEEEEec
Confidence 5 2 2222211 234556777776777 443 45599999999999999975
No 264
>PLN02153 epithiospecifier protein
Probab=33.39 E-value=4.4e+02 Score=25.24 Aligned_cols=68 Identities=16% Similarity=0.145 Sum_probs=40.2
Q ss_pred eeEEeCCeEEE--Eec------CCcEEEEEcCCCCCCCCCCCeEEEcCC-CCCc--eeeeeeeCCEEEEEEC-------C
Q psy2153 20 PPVHVQGRVVC--ALA------DGSVAIFRRGPDGQWDLSKYHTVTLGL-PHHS--VRSLAAVYNKVWCGYK-------N 81 (325)
Q Consensus 20 ~I~~~~~~VfV--gLA------NGtLaVF~R~~~g~WD~~~~~~I~LG~-~~~P--V~cml~v~~~LW~g~g-------n 81 (325)
+.+..++++|| |.. ..++.+|+-.. ..|..-. +.+. |... =.+++.++++||+--| +
T Consensus 27 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~----~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 101 (341)
T PLN02153 27 GIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNT-HTWSIAP----ANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFS 101 (341)
T ss_pred eEEEECCEEEEECCccCCCCceeCcEEEEECCC-CEEEEcC----ccCCCCCCccCceEEEEECCEEEEECCCCCCCccC
Confidence 45566788887 332 12577887544 3575322 2232 2111 1246778899987544 4
Q ss_pred eEEEEcCCCCc
Q psy2153 82 KIHVVDPKSLK 92 (325)
Q Consensus 82 kI~VIn~~Tlk 92 (325)
.++++|+++.+
T Consensus 102 ~v~~yd~~t~~ 112 (341)
T PLN02153 102 DFYSYDTVKNE 112 (341)
T ss_pred cEEEEECCCCE
Confidence 68999998874
No 265
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=32.88 E-value=1.8e+02 Score=28.10 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=46.8
Q ss_pred eCCCceeeeEEe---------CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCce----eeeee-eCCEEEEE
Q psy2153 13 KILDTALPPVHV---------QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSV----RSLAA-VYNKVWCG 78 (325)
Q Consensus 13 kL~dsVl~I~~~---------~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV----~cml~-v~~~LW~g 78 (325)
+=++.|+||... -..+.+|+-+|.|.|.+-.+ ++-.+.+.|.+ -|+ ....- |+-++.++
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a-----f~il~~~~lps--vPv~i~~~G~~devdyRI~Va 246 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA-----FTILKQVQLPS--VPVFISVSGQYDEVDYRIVVA 246 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh-----heeEEEEecCC--CceEEEEEeeeeccceEEEEE
Confidence 345689999874 23699999999999998443 23334566655 444 22332 67799999
Q ss_pred ECCe-EEEEc
Q psy2153 79 YKNK-IHVVD 87 (325)
Q Consensus 79 ~gnk-I~VIn 87 (325)
|+|. ||.|.
T Consensus 247 ~Rdg~iy~ir 256 (257)
T PF14779_consen 247 CRDGKIYTIR 256 (257)
T ss_pred eCCCEEEEEe
Confidence 9965 88863
No 266
>KOG4640|consensus
Probab=32.62 E-value=66 Score=34.81 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=33.2
Q ss_pred CCccceeeCCC-cee-eeEEe--CCeEEEEecCCcEEEEEcCCCC
Q psy2153 6 PTPYPLNKILD-TAL-PPVHV--QGRVVCALADGSVAIFRRGPDG 46 (325)
Q Consensus 6 ~~~L~~IkL~d-sVl-~I~~~--~~~VfVgLANGtLaVF~R~~~g 46 (325)
|+.+|.|..|+ .|+ |+++. .+-+-||++||+|.+-+-.+++
T Consensus 51 ~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 51 WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 89999999886 455 88874 5567899999999999876654
No 267
>KOG4328|consensus
Probab=32.52 E-value=2.2e+02 Score=29.85 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=64.0
Q ss_pred EeCCeEEEEecCCcEEEEEcCCCCC--CCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCe--EEEEcCCCC---ce-e
Q psy2153 23 HVQGRVVCALADGSVAIFRRGPDGQ--WDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNK--IHVVDPKSL---KS-F 94 (325)
Q Consensus 23 ~~~~~VfVgLANGtLaVF~R~~~g~--WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnk--I~VIn~~Tl---ks-f 94 (325)
+.+..|+.|--=|.+-++++..+|. |.+.-++. .+++ | .+-++...+-+.+++. ..|.|+..| ++ |
T Consensus 289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-KI~s----v-~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ 362 (498)
T KOG4328|consen 289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-KITS----V-ALNPVCPWFLATASLDQTAKIWDLRQLRGKASPF 362 (498)
T ss_pred CCCccEEEeecccceEEEEeecCCccchhhhhhhc-ccce----e-ecCCCCchheeecccCcceeeeehhhhcCCCCcc
Confidence 3466777787788889999877764 44333222 3332 1 1123445666666644 778899988 33 3
Q ss_pred EecCCCCCceeEEEEe-CCeEEEEEeCCCeEEEEecC----ccceeeeee
Q psy2153 95 DAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAH----TYQHLQDVD 139 (325)
Q Consensus 95 ~~~~~~~~~V~~Ma~~-G~GVWiS~~~ss~IrL~ha~----T~e~LqdId 139 (325)
--.-+....|..-.-+ -.|=-+....+..||+||.. -.+.+.+|-
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~ 412 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP 412 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee
Confidence 2222223445543333 12335577789999999994 455555553
No 268
>KOG0642|consensus
Probab=32.34 E-value=2.1e+02 Score=30.70 Aligned_cols=93 Identities=16% Similarity=0.220 Sum_probs=54.8
Q ss_pred CccceeeC-CCceeeeEEeCC--eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeE
Q psy2153 7 TPYPLNKI-LDTALPPVHVQG--RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKI 83 (325)
Q Consensus 7 ~~L~~IkL-~dsVl~I~~~~~--~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI 83 (325)
+++++.+= ..+|+|+++..+ ++|-|-.||+|.-|.-.+.+ =+.+.+....|- .+++.+.|++|.
T Consensus 335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~-dp~ds~dp~vl~------~~l~Ghtdavw~------ 401 (577)
T KOG0642|consen 335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ-DPDDSYDPSVLS------GTLLGHTDAVWL------ 401 (577)
T ss_pred eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC-CcccccCcchhc------cceeccccceee------
Confidence 34444432 358999999644 79999999998777533211 111111111221 256777777773
Q ss_pred EEEcCCCCceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEecCccce
Q psy2153 84 HVVDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 84 ~VIn~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
|..|+.+.. -++++.++++|+|.....+.
T Consensus 402 ----------l~~s~~~~~------------Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 402 ----------LALSSTKDR------------LLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred ----------eeecccccc------------eeeecCCceEEeeccCCcCc
Confidence 333332211 34788899999999877666
No 269
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=31.90 E-value=64 Score=19.44 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=10.8
Q ss_pred CceeeeeeeC-CEEEEEECC
Q psy2153 63 HSVRSLAAVY-NKVWCGYKN 81 (325)
Q Consensus 63 ~PV~cml~v~-~~LW~g~gn 81 (325)
..|+||..=. +.||+|..|
T Consensus 5 n~I~~i~~D~~G~lWigT~~ 24 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGTYN 24 (24)
T ss_dssp SCEEEEEE-TTSCEEEEETS
T ss_pred CeEEEEEEcCCcCEEEEeCC
Confidence 5566665543 567777643
No 270
>KOG0307|consensus
Probab=31.85 E-value=47 Score=37.77 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=68.2
Q ss_pred EEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEEC-C--eEEEEcCCCC-ceeEe-cCCCC
Q psy2153 28 VVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYK-N--KIHVVDPKSL-KSFDA-HPRRE 101 (325)
Q Consensus 28 VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~g-n--kI~VIn~~Tl-ksf~~-~~~~~ 101 (325)
+--||-||+|..|+-.+. .-+-+...+-+...-..||+.+-+-. ...|.|+| | .|+|.|.... ..|.- .+..-
T Consensus 83 IaGG~edG~I~ly~p~~~-~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASI-IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeccccCCceEEecchhh-ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 556899999999996653 11112222223333347898843332 34455555 3 3999998888 55544 44456
Q ss_pred CceeEEEEeCC--eEEEEEeCCCeEEEEecCccceee
Q psy2153 102 SQVRQMTWAGD--GVWVSIRLDSTLRMYNAHTYQHLQ 136 (325)
Q Consensus 102 ~~V~~Ma~~G~--GVWiS~~~ss~IrL~ha~T~e~Lq 136 (325)
+.|.++.|..+ .|.-|...+...-+||..--+.+-
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii 198 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII 198 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCccc
Confidence 88899888643 367677777778888887775443
No 271
>KOG4283|consensus
Probab=31.74 E-value=5.4e+02 Score=25.94 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=70.9
Q ss_pred CceeeeEEeCCe---EEEEecCCcEEEEE-cCCCCCC---CCCCC---eEEEcCCC--CCceeeeeee--CCEEE-EEEC
Q psy2153 16 DTALPPVHVQGR---VVCALADGSVAIFR-RGPDGQW---DLSKY---HTVTLGLP--HHSVRSLAAV--YNKVW-CGYK 80 (325)
Q Consensus 16 dsVl~I~~~~~~---VfVgLANGtLaVF~-R~~~g~W---D~~~~---~~I~LG~~--~~PV~cml~v--~~~LW-~g~g 80 (325)
+-|++.-+.... ++-|-|||.+-.++ |.+.|.. |..+- ..+. -.+ ..-|..+.-- ++.+| ||..
T Consensus 189 ~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~~gtd 267 (397)
T KOG4283|consen 189 DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLASCGTD 267 (397)
T ss_pred CceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhhccCc
Confidence 466776665433 44477888888877 4454532 22221 1121 011 1224444333 35666 7888
Q ss_pred CeEEEEcCCCC----cee-EecCCC----CCceeEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 81 NKIHVVDPKSL----KSF-DAHPRR----ESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 81 nkI~VIn~~Tl----ksf-~~~~~~----~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
+++-+.|.++. +.| ++..++ ...|++ ...+|++-+.+++.+.|+..-+++.+.-.++.
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~---~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQS---MDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEEEee---cccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 99999998776 333 111111 122333 34678999999899888888888877766665
No 272
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.43 E-value=64 Score=34.32 Aligned_cols=36 Identities=11% Similarity=0.181 Sum_probs=30.0
Q ss_pred cceeeCCCceeeeEE--eCCeEEEEecCCcEEEEEcCC
Q psy2153 9 YPLNKILDTALPPVH--VQGRVVCALADGSVAIFRRGP 44 (325)
Q Consensus 9 L~~IkL~dsVl~I~~--~~~~VfVgLANGtLaVF~R~~ 44 (325)
+-+|.|++.|.|-.. .+.++.+|+.||+|.+|+.+.
T Consensus 253 vtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~ 290 (545)
T PF11768_consen 253 VTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTR 290 (545)
T ss_pred EEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCC
Confidence 456888888888776 578999999999999999544
No 273
>KOG0650|consensus
Probab=30.38 E-value=2.5e+02 Score=30.62 Aligned_cols=44 Identities=20% Similarity=0.388 Sum_probs=37.0
Q ss_pred CCCceeEEEEeCCeEEEEE-eCCCeEEEEecCccceeeeeecchh
Q psy2153 100 RESQVRQMTWAGDGVWVSI-RLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 100 ~~~~V~~Ma~~G~GVWiS~-~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
....|+++...-.|-|++- +.+.+||+|-..|..++..+-+...
T Consensus 399 Htg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~ 443 (733)
T KOG0650|consen 399 HTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE 443 (733)
T ss_pred cCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce
Confidence 3488999999989999865 5699999999999999988776653
No 274
>KOG0272|consensus
Probab=30.08 E-value=1.9e+02 Score=29.99 Aligned_cols=80 Identities=15% Similarity=0.191 Sum_probs=53.3
Q ss_pred EEcCCCCCceeeeeee-CCE-EEEEEC-CeEEEEcCCCC---ceeEecCCCCCceeEEEEeCC--e-EEEEEeCCCeEEE
Q psy2153 56 VTLGLPHHSVRSLAAV-YNK-VWCGYK-NKIHVVDPKSL---KSFDAHPRRESQVRQMTWAGD--G-VWVSIRLDSTLRM 126 (325)
Q Consensus 56 I~LG~~~~PV~cml~v-~~~-LW~g~g-nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~--G-VWiS~~~ss~IrL 126 (325)
-.+|. ..||...-.. +++ |--||. +.+.|.+..+. +.|.-|. ..|...+.... + --.+...+.+++|
T Consensus 170 SQ~gd-~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~---~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 170 SQVGD-TRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHT---SRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhccC-CCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccc---cceeeEEEccCCCccceeeeccCCceee
Confidence 34565 3677654444 333 333443 66888888887 4565565 55666665532 2 3457889999999
Q ss_pred EecCccceeeeee
Q psy2153 127 YNAHTYQHLQDVD 139 (325)
Q Consensus 127 ~ha~T~e~LqdId 139 (325)
|+.++.+.||++-
T Consensus 246 w~~~~e~~l~~l~ 258 (459)
T KOG0272|consen 246 WKLSQETPLQDLE 258 (459)
T ss_pred eccCCCcchhhhh
Confidence 9999999999876
No 275
>KOG2695|consensus
Probab=29.90 E-value=79 Score=32.17 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=69.4
Q ss_pred CccceeeCCCceeeeEEeCCeEE---EEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEECC
Q psy2153 7 TPYPLNKILDTALPPVHVQGRVV---CALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYKN 81 (325)
Q Consensus 7 ~~L~~IkL~dsVl~I~~~~~~Vf---VgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~gn 81 (325)
-.+.++++|++-.|+--..-+-| +||.-+ +++-++..+-+ + .+++ .+-|-.+... ++-|.+||+|
T Consensus 204 ~~~~SlQi~~a~~CawSlni~gyhfs~G~sqq-v~L~nvetg~~----q----sf~s-ksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 204 YMLCSLQIPKAWSCAWSLNIMGYHFSVGLSQQ-VLLTNVETGHQ----Q----SFQS-KSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred CceeeecCCcchhhhhhhccceeeecccccce-eEEEEeecccc----c----cccc-chhHHHHHhcccCCeeEecccC
Confidence 35778889998888554443333 455443 44444433211 1 1221 1234444333 4678999998
Q ss_pred e-EEEEcCCCC---ceeEecC-CCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccce
Q psy2153 82 K-IHVVDPKSL---KSFDAHP-RRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQH 134 (325)
Q Consensus 82 k-I~VIn~~Tl---ksf~~~~-~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~ 134 (325)
. |++||..+. +-..++. ..++.|++|-.-. +---++-...+.|.|||-.-.|+
T Consensus 274 geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 8 999998876 2222221 1236666655432 23445667889999999888777
No 276
>KOG1912|consensus
Probab=29.69 E-value=2.9e+02 Score=31.22 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=49.7
Q ss_pred CEEEEEEC---CeEEEEcCCCC---ceeEecCCCCCceeEEEEe----CC-eEEEEEeCCCeEEEEecCccceeeeeecc
Q psy2153 73 NKVWCGYK---NKIHVVDPKSL---KSFDAHPRRESQVRQMTWA----GD-GVWVSIRLDSTLRMYNAHTYQHLQDVDIE 141 (325)
Q Consensus 73 ~~LW~g~g---nkI~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~----G~-GVWiS~~~ss~IrL~ha~T~e~LqdIdIa 141 (325)
-++-.|++ ++|.+.|-.+- ..|+-+. ..|..|.|. .. .|-.++..+++|-||++.|.+.+..-|-+
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~---~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys 154 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVINWLSHSN---DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS 154 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhhhhcCCC---cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC
Confidence 34555555 56899888776 2333333 556666663 22 68999999999999999999999999888
Q ss_pred hh
Q psy2153 142 PY 143 (325)
Q Consensus 142 ~~ 143 (325)
+.
T Consensus 155 ~~ 156 (1062)
T KOG1912|consen 155 HE 156 (1062)
T ss_pred Cc
Confidence 64
No 277
>PHA02790 Kelch-like protein; Provisional
Probab=29.42 E-value=6.3e+02 Score=25.84 Aligned_cols=108 Identities=9% Similarity=0.055 Sum_probs=59.4
Q ss_pred eeeEEeCCeEEEEec-C---CcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCCcee
Q psy2153 19 LPPVHVQGRVVCALA-D---GSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLKSF 94 (325)
Q Consensus 19 l~I~~~~~~VfVgLA-N---GtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tlksf 94 (325)
.+.+..++++||-=. + .++-.|+... +.|..-++- ..|. .-.++..++++||+.-| .+.+.|+++-+.-
T Consensus 356 ~~~~~~~g~IYviGG~~~~~~~ve~ydp~~-~~W~~~~~m----~~~r-~~~~~~~~~~~IYv~GG-~~e~ydp~~~~W~ 428 (480)
T PHA02790 356 PAVASINNVIYVIGGHSETDTTTEYLLPNH-DQWQFGPST----YYPH-YKSCALVFGRRLFLVGR-NAEFYCESSNTWT 428 (480)
T ss_pred cEEEEECCEEEEecCcCCCCccEEEEeCCC-CEEEeCCCC----CCcc-ccceEEEECCEEEEECC-ceEEecCCCCcEe
Confidence 355667888888421 1 2466777543 468643321 1111 11367788999998644 5677888877433
Q ss_pred EecCCCC-CceeEEEEeCCeEEEEEeC-----CCeEEEEecCccc
Q psy2153 95 DAHPRRE-SQVRQMTWAGDGVWVSIRL-----DSTLRMYNAHTYQ 133 (325)
Q Consensus 95 ~~~~~~~-~~V~~Ma~~G~GVWiS~~~-----ss~IrL~ha~T~e 133 (325)
.+.+-+. ..=..++..++-+++.--. ..+++.||.++-+
T Consensus 429 ~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 429 LIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 3322111 1112345556667765321 2467888877644
No 278
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=29.26 E-value=5.2e+02 Score=24.80 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=41.6
Q ss_pred CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEECCe--EEEEcCCCC
Q psy2153 26 GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYKNK--IHVVDPKSL 91 (325)
Q Consensus 26 ~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~gnk--I~VIn~~Tl 91 (325)
.++++|+-+|-.+++.+...+ ....+.. ..+|++|-+++ +.|-+=+|++ +++.+-..+
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~-------~~~kl~~-~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPG-------TLEKLIG-RRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred cEEEEEeCCceEEEEcccCCC-------CeEEecC-cCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 489999999999988532211 3345543 36899998886 6677777766 999887665
No 279
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=29.17 E-value=5.1e+02 Score=24.69 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=36.9
Q ss_pred eEEeCCeEEEEec--CCcEEEEEcC-CCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC-------------CeEE
Q psy2153 21 PVHVQGRVVCALA--DGSVAIFRRG-PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK-------------NKIH 84 (325)
Q Consensus 21 I~~~~~~VfVgLA--NGtLaVF~R~-~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g-------------nkI~ 84 (325)
-+..+++|||.-. +-.+.+|+.+ ....|-.-.+ ++ +.+. .--++..++++||+.-| +.++
T Consensus 13 ~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~--~p-~~~R-~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~ 88 (346)
T TIGR03547 13 GAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIAD--FP-GGPR-NQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVY 88 (346)
T ss_pred EEEECCEEEEEccccCCeeEEEECCCCCCCceECCC--CC-CCCc-ccceEEEECCEEEEEeCCCCCCCCCcceecccEE
Confidence 3355888888432 2356666642 3345642111 00 0111 11256778899987544 2478
Q ss_pred EEcCCCCc
Q psy2153 85 VVDPKSLK 92 (325)
Q Consensus 85 VIn~~Tlk 92 (325)
..|+.+.+
T Consensus 89 ~Yd~~~~~ 96 (346)
T TIGR03547 89 RYDPKKNS 96 (346)
T ss_pred EEECCCCE
Confidence 88888873
No 280
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=28.96 E-value=8.2e+02 Score=26.98 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=78.2
Q ss_pred cceeeCCCceeeeEEe--CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCC-Cceeeeeee------CCEEEEEE
Q psy2153 9 YPLNKILDTALPPVHV--QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH-HSVRSLAAV------YNKVWCGY 79 (325)
Q Consensus 9 L~~IkL~dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~-~PV~cml~v------~~~LW~g~ 79 (325)
--+++|++.|..|+.. +..++|-|.||.+-+|+...+..-.. ..+.+.... .+-.++... ++-+..-|
T Consensus 123 ~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~---~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~ 199 (670)
T PF10395_consen 123 EFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKV---PQLKLKSSINVSYSKFVNDFELENGKDLLLTVS 199 (670)
T ss_pred eEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccc---cccccccccceehhhhhcccccccCCceEEEEE
Confidence 3478999999999987 77899999999999999833221111 123333211 111111111 12333333
Q ss_pred C---Ce--EEEEcC--CCCceeEecC---CCCCce-eEEEEeCCeEEEEEeCCCeEEEEecCccceeeeeecchhhhh
Q psy2153 80 K---NK--IHVVDP--KSLKSFDAHP---RRESQV-RQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 146 (325)
Q Consensus 80 g---nk--I~VIn~--~Tlksf~~~~---~~~~~V-~~Ma~~G~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~ 146 (325)
. ++ ...+.- ++-+.+|+++ .....- ..++.. .|.-+-+ .+.+|..|..-.++..+.|.+.+.+.+
T Consensus 200 ~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~ 275 (670)
T PF10395_consen 200 QLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDK 275 (670)
T ss_pred EcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE-eCCEEEEEEcCCceEEEEEEechhhcc
Confidence 3 22 233332 3335556542 111112 234544 6777777 777999999999999999999866555
No 281
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=28.91 E-value=2.7e+02 Score=27.36 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCEEEEEE--------------CCeEEEEcCCCC----ceeEecCCCCCceeEEEEeCCeEEEEEeCCCeEEEEec
Q psy2153 72 YNKVWCGY--------------KNKIHVVDPKSL----KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 129 (325)
Q Consensus 72 ~~~LW~g~--------------gnkI~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~ss~IrL~ha 129 (325)
+++||++. +++|++++.... ...++-.+.....+-|+....|||++- ....+++.|+
T Consensus 24 ~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~GlyV~~-~~~i~~~~d~ 98 (367)
T TIGR02604 24 RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGGVYVAT-PPDILFLRDK 98 (367)
T ss_pred CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCCEEEeC-CCeEEEEeCC
Confidence 37899986 358999976544 222333334456677888777899874 2333445455
No 282
>KOG1007|consensus
Probab=27.82 E-value=3.7e+02 Score=26.95 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=65.6
Q ss_pred ceeeeEEeCC-eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCC--Cceee--eeee--CCEEEEEECCeEEEEcCC
Q psy2153 17 TALPPVHVQG-RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPH--HSVRS--LAAV--YNKVWCGYKNKIHVVDPK 89 (325)
Q Consensus 17 sVl~I~~~~~-~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~--~PV~c--ml~v--~~~LW~g~gnkI~VIn~~ 89 (325)
-|.|+.+..| .=++++++..|+++++.....- ...+..-++.. ...++ .-.. +++|=...+..+-.+|.+
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~---vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~R 201 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKI---VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLR 201 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcch---heeecccccccccceecccccCCCCccceEEEeCCCcEEEEEcc
Confidence 5678888754 4678888888888887654321 00010001100 01110 1111 135555556667788999
Q ss_pred CCc-eeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCc-cceeeee
Q psy2153 90 SLK-SFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHT-YQHLQDV 138 (325)
Q Consensus 90 Tlk-sf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T-~e~LqdI 138 (325)
|++ -..+.......|+.|-.. .+.+-+++-.++.||+||+.. ...+|+.
T Consensus 202 T~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el 254 (370)
T KOG1007|consen 202 TMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL 254 (370)
T ss_pred chhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc
Confidence 983 232222222445555443 345778889999999999864 3355553
No 283
>KOG1897|consensus
Probab=27.18 E-value=2.5e+02 Score=32.19 Aligned_cols=63 Identities=32% Similarity=0.381 Sum_probs=41.3
Q ss_pred CCeEEEEecCCcEEEEEcCC-CCCCCCCCCeEEEcCCCCCce----------eeeeeeCCEEEEEEC-CeEEEEcCCCC
Q psy2153 25 QGRVVCALADGSVAIFRRGP-DGQWDLSKYHTVTLGLPHHSV----------RSLAAVYNKVWCGYK-NKIHVVDPKSL 91 (325)
Q Consensus 25 ~~~VfVgLANGtLaVF~R~~-~g~WD~~~~~~I~LG~~~~PV----------~cml~v~~~LW~g~g-nkI~VIn~~Tl 91 (325)
.++++|||.||.+..|.-+. .|+ +...+...||. .|+ +.|....|+=|..+. |.=.++.+-++
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~--lsd~Kk~~lGt--~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~ 669 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQ--LSDRKKVTLGT--QPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSL 669 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccce--EccccccccCC--CCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccch
Confidence 56899999999998887543 233 45667788998 564 234444566666655 33556666666
No 284
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.12 E-value=1.2e+02 Score=30.17 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCEEEEE--ECCeEEEEcCCCCc--eeEecCCCCCceeEEEEeC-CeEEEEEeCCCeEEEEecCccc
Q psy2153 72 YNKVWCG--YKNKIHVVDPKSLK--SFDAHPRRESQVRQMTWAG-DGVWVSIRLDSTLRMYNAHTYQ 133 (325)
Q Consensus 72 ~~~LW~g--~gnkI~VIn~~Tlk--sf~~~~~~~~~V~~Ma~~G-~GVWiS~~~ss~IrL~ha~T~e 133 (325)
++.||.+ .+|-|--||+.+-+ .|+.-.....--+.+-++. .-+|++-.....+.-||..+.+
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 6899999 88999999999983 3322221112222333333 3499999999999999887655
No 285
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=27.06 E-value=6.8e+02 Score=25.43 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=62.9
Q ss_pred ceeeeEE-eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeC-CEEEEEECCeEEEEcCCCCcee
Q psy2153 17 TALPPVH-VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVY-NKVWCGYKNKIHVVDPKSLKSF 94 (325)
Q Consensus 17 sVl~I~~-~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~-~~LW~g~gnkI~VIn~~Tlksf 94 (325)
.++.+.. .++.+|+.-.+|.+.+- ++.+..|...+-..+.......++..+...+ +++|++..+=+......--++|
T Consensus 282 ~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW 360 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSW 360 (398)
T ss_pred ceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcce
Confidence 4445544 46778888788875554 4454457432323344443335677776664 6888877665666555555777
Q ss_pred EecC---CCCCceeEEEEeC-CeEEEEEeCCCeEE
Q psy2153 95 DAHP---RRESQVRQMTWAG-DGVWVSIRLDSTLR 125 (325)
Q Consensus 95 ~~~~---~~~~~V~~Ma~~G-~GVWiS~~~ss~Ir 125 (325)
+..+ +-......+.-.+ ...|+.-.++-.||
T Consensus 361 ~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 361 KRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred eEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 6644 2235566777443 56676665555554
No 286
>KOG0302|consensus
Probab=26.75 E-value=6.3e+02 Score=26.17 Aligned_cols=118 Identities=14% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCceeeeEEe--CCeEEEE-ecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEEC---CeEEEEcC
Q psy2153 15 LDTALPPVHV--QGRVVCA-LADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYK---NKIHVVDP 88 (325)
Q Consensus 15 ~dsVl~I~~~--~~~VfVg-LANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~g---nkI~VIn~ 88 (325)
.++|-.|.+. ++.||++ -.||++.|++-.+.. ..+ ++..-...+=|.-+---.+.=..++| +-+.|.|.
T Consensus 257 ~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~----~~~-~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL 331 (440)
T KOG0302|consen 257 TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP----KKA-AVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL 331 (440)
T ss_pred ccchhhhccCCccCceEEeeecCceEEEEEecCCC----ccc-eeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence 3578888883 4456665 469999998843321 111 12221111122221111111123444 23788888
Q ss_pred CCCc------eeEecCCCCCceeEEEEe--CCeEEEEEeCCCeEEEEecCccceeeeeec
Q psy2153 89 KSLK------SFDAHPRRESQVRQMTWA--GDGVWVSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 89 ~Tlk------sf~~~~~~~~~V~~Ma~~--G~GVWiS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
+++| +|.-|. ..|+++.+. ...|..+-..+-+|.+||-....--.+++-
T Consensus 332 R~~~~~~pVA~fk~Hk---~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~ 388 (440)
T KOG0302|consen 332 RQFKSGQPVATFKYHK---APITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ 388 (440)
T ss_pred hhccCCCcceeEEecc---CCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc
Confidence 7772 677777 789999997 568999999999999999877766555443
No 287
>KOG3621|consensus
Probab=26.35 E-value=1.4e+02 Score=32.75 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=49.7
Q ss_pred eeeEEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCe-EEEEcCC-CC---ce
Q psy2153 19 LPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNK-IHVVDPK-SL---KS 93 (325)
Q Consensus 19 l~I~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnk-I~VIn~~-Tl---ks 93 (325)
+|.--.+.++-+|-+-|.|++|.|+.+-.-...+-. +.-..-++|+-.++.-+=+|+++- |-|+... .+ .-
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~----~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG----ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccC----ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 455556889999999999999999864321111111 110012223333334455667655 4444322 22 12
Q ss_pred eEecCC--CCCceeEEEEeCCe
Q psy2153 94 FDAHPR--RESQVRQMTWAGDG 113 (325)
Q Consensus 94 f~~~~~--~~~~V~~Ma~~G~G 113 (325)
+..+-+ ...+|+++.|+.+|
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~ 136 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNG 136 (726)
T ss_pred eeccccccCCceEEEEEecccc
Confidence 222222 36899999998555
No 288
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=26.03 E-value=5.5e+02 Score=25.08 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred EEeCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEE-cCCCCCceee-eeeeCCEEEEEECCeEEEEcCCCC--------
Q psy2153 22 VHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT-LGLPHHSVRS-LAAVYNKVWCGYKNKIHVVDPKSL-------- 91 (325)
Q Consensus 22 ~~~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~-LG~~~~PV~c-ml~v~~~LW~g~gnkI~VIn~~Tl-------- 91 (325)
++.++++|++.... +.+.....-..-....+. .|.....+.. +..-++--|---+...|+.|+...
T Consensus 118 v~pdG~~wfgt~~~----~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 118 VDPDGRIWFGDMGY----FDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EcCCCCEEEeCCCc----cccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Q ss_pred ---------ceeEecCCCCCceeEEEEeCCe-EE-EEEeCCCeEEEEecCccceeeeeec
Q psy2153 92 ---------KSFDAHPRRESQVRQMTWAGDG-VW-VSIRLDSTLRMYNAHTYQHLQDVDI 140 (325)
Q Consensus 92 ---------ksf~~~~~~~~~V~~Ma~~G~G-VW-iS~~~ss~IrL~ha~T~e~LqdIdI 140 (325)
+.+..........--|+.+.+| +| .+...++-|..|+.+ .+++++|.+
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
No 289
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=25.93 E-value=5.9e+02 Score=24.37 Aligned_cols=156 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred CccceeeCCCceee-------eEEeC-------CeEEEEecC-CcEEEEEcCCCCCCCCCCCeEEEcCCCCCc-------
Q psy2153 7 TPYPLNKILDTALP-------PVHVQ-------GRVVCALAD-GSVAIFRRGPDGQWDLSKYHTVTLGLPHHS------- 64 (325)
Q Consensus 7 ~~L~~IkL~dsVl~-------I~~~~-------~~VfVgLAN-GtLaVF~R~~~g~WD~~~~~~I~LG~~~~P------- 64 (325)
+.++.+.+|+.+.- |.-.. .++|++=+. +-|+||+...+..|-.... ..-. .|
T Consensus 45 ~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~---~~~~--~p~~~~~~i 119 (287)
T PF03022_consen 45 QLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN---SFSP--DPDAGPFTI 119 (287)
T ss_dssp CEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC---GCTT--S-SSEEEEE
T ss_pred cEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC---Ccce--eccccceec
Q ss_pred ----------eeeeeeeC-----CEEEEE--ECCeEEEEcCCCC------------ceeEecCCCCCceeEEEEeCCe-E
Q psy2153 65 ----------VRSLAAVY-----NKVWCG--YKNKIHVVDPKSL------------KSFDAHPRRESQVRQMTWAGDG-V 114 (325)
Q Consensus 65 ----------V~cml~v~-----~~LW~g--~gnkI~VIn~~Tl------------ksf~~~~~~~~~V~~Ma~~G~G-V 114 (325)
+-.+.... ..||-. ++.++|-|.++.| +.|+.--++..+-.-|+.+..| +
T Consensus 120 ~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~l 199 (287)
T PF03022_consen 120 GGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNL 199 (287)
T ss_dssp TTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEE
T ss_pred cCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcE
Q ss_pred EEEEeCCCeEEEEecCccceeeeeecchhhhhhcccccccccceeeccccccccccCccccCCCccccccccccccceee
Q psy2153 115 WVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGWYANNPADILESFTVCQSHLLC 194 (325)
Q Consensus 115 WiS~~~ss~IrL~ha~T~e~LqdIdIa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~f~~~~~~~~c 194 (325)
+++.-....|..|++.+--.-+.+.+-..=.+-|
T Consensus 200 y~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l---------------------------------------------- 233 (287)
T PF03022_consen 200 YFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTL---------------------------------------------- 233 (287)
T ss_dssp EEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-G----------------------------------------------
T ss_pred EEecCCCCeEEEEeCCCCcCccchheeEEcCcee----------------------------------------------
Q ss_pred eeccCCCCCCCcceeEEEEEEeeC---CeeeEeCCC
Q psy2153 195 IASVPGTGKLGFSFVRITALLISS---SRLWIGTAS 227 (325)
Q Consensus 195 i~~vp~~~~~~~~~~riTsLl~~~---~~LWiGTs~ 227 (325)
....+|-+.+ +.||+=++.
T Consensus 234 --------------~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 234 --------------QWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp --------------SSEEEEEE-T--TS-EEEEE-S
T ss_pred --------------eccceeeeccccCceEEEEECc
No 290
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.27 E-value=7.1e+02 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=27.9
Q ss_pred CccceeeCC-CceeeeEEe-CCeEEEEecCCcEEEEE
Q psy2153 7 TPYPLNKIL-DTALPPVHV-QGRVVCALADGSVAIFR 41 (325)
Q Consensus 7 ~~L~~IkL~-dsVl~I~~~-~~~VfVgLANGtLaVF~ 41 (325)
++|++|.++ +.+.++-+. +..+.+=+.||++.+|+
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~ 107 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYD 107 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEe
Confidence 567888887 467777764 55899999999999997
No 291
>KOG2114|consensus
Probab=24.78 E-value=1.1e+03 Score=26.98 Aligned_cols=49 Identities=18% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCceeeeeeeCC--EEEEEECCe-EEEEcCCCC----ceeEecCCCCCceeEEEEe
Q psy2153 62 HHSVRSLAAVYN--KVWCGYKNK-IHVVDPKSL----KSFDAHPRRESQVRQMTWA 110 (325)
Q Consensus 62 ~~PV~cml~v~~--~LW~g~gnk-I~VIn~~Tl----ksf~~~~~~~~~V~~Ma~~ 110 (325)
..|+.++.+.++ .+-||..|- |+.+.-+-+ -.+....+....||.++..
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~ 180 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALR 180 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEe
Confidence 477877777664 677777765 666655544 2455566677889987654
No 292
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=24.61 E-value=7.5e+02 Score=25.11 Aligned_cols=116 Identities=7% Similarity=-0.012 Sum_probs=60.7
Q ss_pred ceeeeEE--e-CCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCC-c
Q psy2153 17 TALPPVH--V-QGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL-K 92 (325)
Q Consensus 17 sVl~I~~--~-~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl-k 92 (325)
..++|.+ . +++-||.=++|.| +-..+.+..|.........-.....|...+...+++.|+. |..-.++.+..- +
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~I-L~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~v-G~~G~il~T~DgG~ 166 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTL-LETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWII-GKPAILLHTSDGGE 166 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEE-EEEcCCCCCceECccCcccccccccceeeeEEECCEEEEE-cCceEEEEEcCCCC
Confidence 6688888 3 4466666566643 3334555578753211101111124678888888899987 555566666555 7
Q ss_pred eeEecCC---CCCceeEEEEeCCe-EEEEEeCCCeEEEEec-Cccce
Q psy2153 93 SFDAHPR---RESQVRQMTWAGDG-VWVSIRLDSTLRMYNA-HTYQH 134 (325)
Q Consensus 93 sf~~~~~---~~~~V~~Ma~~G~G-VWiS~~~ss~IrL~ha-~T~e~ 134 (325)
+++..+. ....-..+...+.+ .|+.-..+..++-=|. +|.+.
T Consensus 167 tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~ 213 (398)
T PLN00033 167 TWERIPLSPKLPGEPVLIKATGPKSAEMVTDEGAIYVTSNAGRNWKA 213 (398)
T ss_pred CceECccccCCCCCceEEEEECCCceEEEeccceEEEECCCCCCceE
Confidence 7764332 11122333434333 5555544444444332 34443
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.59 E-value=1.1e+03 Score=26.89 Aligned_cols=113 Identities=14% Similarity=0.275 Sum_probs=69.4
Q ss_pred eCCeEEEEecCCcE-EEEEcC---CCC------CCCCCCCeEEEcCCCCCceeeeeeeC--CEEEEEEC-CeEEEE----
Q psy2153 24 VQGRVVCALADGSV-AIFRRG---PDG------QWDLSKYHTVTLGLPHHSVRSLAAVY--NKVWCGYK-NKIHVV---- 86 (325)
Q Consensus 24 ~~~~VfVgLANGtL-aVF~R~---~~g------~WD~~~~~~I~LG~~~~PV~cml~v~--~~LW~g~g-nkI~VI---- 86 (325)
..+.+|+++..... .+++-. .++ .||...| ..+...|..|-... +.|.++.. +.|.++
T Consensus 32 ~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~-----~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~ 106 (928)
T PF04762_consen 32 DSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLP-----DDPNDKIVSFQYLADSESLCIALASGDIILVREDP 106 (928)
T ss_pred CCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCC-----cCCCCcEEEEEeccCCCcEEEEECCceEEEEEccC
Confidence 46688888886655 444422 222 1443332 12234566665553 57888875 669998
Q ss_pred cCCCCceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeecchh
Q psy2153 87 DPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 87 n~~Tlksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
++.+.+.-.+. .-+.-|.+|+|+.++==+++-. ..+|-+- +.+++.+.|+.+.+.
T Consensus 107 ~~~~~~~E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~m-t~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 107 DPDEDEIEIVG-SVDSGILAASWSPDEELLALVTGEGNLLLM-TRDFDPISEVPLDSD 162 (928)
T ss_pred CCCCceeEEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEE-eccceEEEEeecCcc
Confidence 66666444443 3457899999998774444433 3355444 799999999988754
No 294
>KOG1240|consensus
Probab=24.48 E-value=6.2e+02 Score=30.02 Aligned_cols=121 Identities=13% Similarity=0.089 Sum_probs=73.1
Q ss_pred CceeeeEEe--CCeEEEEecCCcEEEEEcCCCCC--CCCCCCeEEEcCCCCCceeeeeeeC----C-EEEEEEC-CeEEE
Q psy2153 16 DTALPPVHV--QGRVVCALADGSVAIFRRGPDGQ--WDLSKYHTVTLGLPHHSVRSLAAVY----N-KVWCGYK-NKIHV 85 (325)
Q Consensus 16 dsVl~I~~~--~~~VfVgLANGtLaVF~R~~~g~--WD~~~~~~I~LG~~~~PV~cml~v~----~-~LW~g~g-nkI~V 85 (325)
..|.++..+ .+++-||..||.+-+++-+.-.. -....-....+-.+ .++..|..-. . .|-.+.. ..|..
T Consensus 1099 sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~-g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1099 SRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKD-GVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred CceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCC-CceEEeecccccccceeEEEEEeccceEE
Confidence 455555544 55788899999999998665211 11111111112111 3455554331 2 3334444 45999
Q ss_pred EcCCCCc---eeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeee
Q psy2153 86 VDPKSLK---SFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDV 138 (325)
Q Consensus 86 In~~Tlk---sf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdI 138 (325)
.|+.+++ ..+. +.+...|+.++.+..+-|+.+-+ ++.+-|||-.-...+...
T Consensus 1178 ~D~r~~~~~w~lk~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw 1233 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW 1233 (1431)
T ss_pred ecchhhhhHHhhhc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc
Confidence 9999983 2222 23458899999998888877754 788999998776655443
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=24.28 E-value=3.4e+02 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.198 Sum_probs=51.8
Q ss_pred CCEEEEEECCeEEEEcCC-CC-----ceeEecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeecchh
Q psy2153 72 YNKVWCGYKNKIHVVDPK-SL-----KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 72 ~~~LW~g~gnkI~VIn~~-Tl-----ksf~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
+++|-+.-++++.-|-.. .- ..-++..|+.-|=+.++++-++--+++.. .++|++||...- .|. +|.+.
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf--~I~p~ 83 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELF--VIPPA 83 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeE--EcCcc
Confidence 578888888886666432 22 44578889999999999999998888886 678999999883 343 45543
No 296
>KOG0270|consensus
Probab=24.07 E-value=3.7e+02 Score=28.12 Aligned_cols=121 Identities=18% Similarity=0.149 Sum_probs=76.8
Q ss_pred CCCCccceeeCCCceeeeEEeC---------CeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCcee--------
Q psy2153 4 PHPTPYPLNKILDTALPPVHVQ---------GRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR-------- 66 (325)
Q Consensus 4 ~~~~~L~~IkL~dsVl~I~~~~---------~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~-------- 66 (325)
|.+=..|-+-||+..+|+...+ |+|-+|.-|-.|-||+-+-- | .-..++.||.-.+-+.
T Consensus 162 ~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~---d-~v~P~~~LGs~~sk~~~k~~k~~~ 237 (463)
T KOG0270|consen 162 ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIV---D-AVLPCVTLGSKASKKKKKKGKRSN 237 (463)
T ss_pred cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccc---c-ccccceeechhhhhhhhhhccccc
Confidence 3445667888999999998863 46777777766666653210 1 0114578884222221
Q ss_pred ----------eeeee---CCEEEEEECCe-EEEEcCCCC---ceeEecCCCCCceeEEEEeCC--eEEEEEeCCCeEEEE
Q psy2153 67 ----------SLAAV---YNKVWCGYKNK-IHVVDPKSL---KSFDAHPRRESQVRQMTWAGD--GVWVSIRLDSTLRMY 127 (325)
Q Consensus 67 ----------cml~v---~~~LW~g~gnk-I~VIn~~Tl---ksf~~~~~~~~~V~~Ma~~G~--GVWiS~~~ss~IrL~ 127 (325)
.|+.- .+-|--|+.++ |++.|..+. ++++.|. .+|++|.+... -+-++-+.+.+++|+
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~---k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHG---KKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcC---CceeEEEecCCCceEEEeccccceEEee
Confidence 11111 12333455555 999999988 4556554 78999999743 477888889999999
Q ss_pred ecCc
Q psy2153 128 NAHT 131 (325)
Q Consensus 128 ha~T 131 (325)
|-..
T Consensus 315 D~R~ 318 (463)
T KOG0270|consen 315 DCRD 318 (463)
T ss_pred eccC
Confidence 9874
No 297
>KOG1063|consensus
Probab=23.80 E-value=1.6e+02 Score=32.39 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=35.1
Q ss_pred eeeee--CCEEEEEECCeEEEEcCCCC--c------eeEecCCCCCceeEEEEe---C-CeEEEEEeCCCeEEEEecC
Q psy2153 67 SLAAV--YNKVWCGYKNKIHVVDPKSL--K------SFDAHPRRESQVRQMTWA---G-DGVWVSIRLDSTLRMYNAH 130 (325)
Q Consensus 67 cml~v--~~~LW~g~gnkI~VIn~~Tl--k------sf~~~~~~~~~V~~Ma~~---G-~GVWiS~~~ss~IrL~ha~ 130 (325)
||..+ +++.-.+||+..++++--+- . .++-|.| -|+.++.+ + +-.-.|.+.|.+||+|...
T Consensus 150 cL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~D---WIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~ 224 (764)
T KOG1063|consen 150 CLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTD---WIRSLAFARLGGDDLLLASSSQDRYIRIWRIV 224 (764)
T ss_pred HHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccch---hhhhhhhhccCCCcEEEEecCCceEEEEEEEE
Confidence 55555 36777888887666653322 2 3344553 34433332 2 3345567789999999653
No 298
>KOG0290|consensus
Probab=23.50 E-value=1.4e+02 Score=29.89 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=36.5
Q ss_pred eeEecCCCCCceeEEEEeC--CeEEEEEeCCCeEEEEecCccceeeeeecchh
Q psy2153 93 SFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPY 143 (325)
Q Consensus 93 sf~~~~~~~~~V~~Ma~~G--~GVWiS~~~ss~IrL~ha~T~e~LqdIdIa~~ 143 (325)
++-+|. ..|..++..+ ..|+.|+..++.+|+||-..++|-.-|==.+.
T Consensus 191 QLIAHD---KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~ 240 (364)
T KOG0290|consen 191 QLIAHD---KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS 240 (364)
T ss_pred EEEecC---cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC
Confidence 444554 6677777775 66999999999999999999999665544443
No 299
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=22.99 E-value=92 Score=31.98 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=33.6
Q ss_pred CCCCCCccceeeCCCceeeeEEeC----CeEEEEec-CCcEEEEEc
Q psy2153 2 EYPHPTPYPLNKILDTALPPVHVQ----GRVVCALA-DGSVAIFRR 42 (325)
Q Consensus 2 ~~~~~~~L~~IkL~dsVl~I~~~~----~~VfVgLA-NGtLaVF~R 42 (325)
-|.+.++.|+.+|+.++.+|.-.+ ..++|.|+ +|+|.|.--
T Consensus 314 Vy~d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YL 359 (418)
T PF14727_consen 314 VYEDTTLVWSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYL 359 (418)
T ss_pred EEeCCeEEEecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEe
Confidence 488999999999999888888764 56888888 888887763
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.99 E-value=5.4e+02 Score=25.46 Aligned_cols=81 Identities=17% Similarity=0.179 Sum_probs=54.9
Q ss_pred CCceeeeeeeC-CEEEEEECCe---------EEEEcCCC-CceeEecCC----CCCceeEEEEeCCe--EEEEEeCCCeE
Q psy2153 62 HHSVRSLAAVY-NKVWCGYKNK---------IHVVDPKS-LKSFDAHPR----RESQVRQMTWAGDG--VWVSIRLDSTL 124 (325)
Q Consensus 62 ~~PV~cml~v~-~~LW~g~gnk---------I~VIn~~T-lksf~~~~~----~~~~V~~Ma~~G~G--VWiS~~~ss~I 124 (325)
+.+||-|..-. +.+|+|++-+ |....... ++.+++..+ =..-|-.++...+| |-+|.-++..+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~ 241 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRV 241 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEE
Confidence 35788877664 7999999854 22333322 233433221 12556678887766 55666789999
Q ss_pred EEEecCccceeeeeecch
Q psy2153 125 RMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 125 rL~ha~T~e~LqdIdIa~ 142 (325)
-+||..|.+.+..+.+..
T Consensus 242 ~~~d~~tg~~~~~~~l~D 259 (305)
T PF07433_consen 242 AVWDAATGRLLGSVPLPD 259 (305)
T ss_pred EEEECCCCCEeeccccCc
Confidence 999999999999888764
No 301
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.72 E-value=4.2e+02 Score=26.64 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=38.5
Q ss_pred CCCceeEEEEeCCe-EEEEEeC-----CCeEEEEecCccceeeeeecchhhhhhc
Q psy2153 100 RESQVRQMTWAGDG-VWVSIRL-----DSTLRMYNAHTYQHLQDVDIEPYVSKML 148 (325)
Q Consensus 100 ~~~~V~~Ma~~G~G-VWiS~~~-----ss~IrL~ha~T~e~LqdIdIa~~v~~~l 148 (325)
...+|+||...++| ||..++- +--.-+=|..-.+.|+-+|..+.++.-+
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence 34779999999877 9999974 3335677778888999999988877666
No 302
>KOG2041|consensus
Probab=22.27 E-value=4.5e+02 Score=29.63 Aligned_cols=92 Identities=21% Similarity=0.302 Sum_probs=55.3
Q ss_pred eEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeeeeeeCCEEEEEECCeEEEEcCCCC----------ceeEe
Q psy2153 27 RVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSL----------KSFDA 96 (325)
Q Consensus 27 ~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cml~v~~~LW~g~gnkI~VIn~~Tl----------ksf~~ 96 (325)
++-|+-+||..-+.+...| ++|-++..|- .-|-.=-..++.+-+-|||.---..++.- +.+-.
T Consensus 231 ~lavcy~nGr~QiMR~eND-----~~Pvv~dtgm--~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gt 303 (1189)
T KOG2041|consen 231 RLAVCYANGRMQIMRSEND-----PEPVVVDTGM--KIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGT 303 (1189)
T ss_pred EEEEEEcCceehhhhhcCC-----CCCeEEeccc--EeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEE
Confidence 5778888998888874443 4556666664 11111122247788888876444433222 11111
Q ss_pred cCCCCCceeEEEEeCCeEEEEEeCCCeEE
Q psy2153 97 HPRRESQVRQMTWAGDGVWVSIRLDSTLR 125 (325)
Q Consensus 97 ~~~~~~~V~~Ma~~G~GVWiS~~~ss~Ir 125 (325)
-.-+++.|+.+.|.|.|+=|++.-+++|+
T Consensus 304 lkvpg~~It~lsWEg~gLriA~Avdsfiy 332 (1189)
T KOG2041|consen 304 LKVPGSCITGLSWEGTGLRIAIAVDSFIY 332 (1189)
T ss_pred EecCCceeeeeEEcCCceEEEEEecceEE
Confidence 22355889999999999888877776653
No 303
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=21.96 E-value=2.2e+02 Score=17.92 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=19.0
Q ss_pred eeeeEEeCCeEEEEecCCcEEEEEcCCCC
Q psy2153 18 ALPPVHVQGRVVCALADGSVAIFRRGPDG 46 (325)
Q Consensus 18 Vl~I~~~~~~VfVgLANGtLaVF~R~~~g 46 (325)
|.+|..-.++-++=+.||+|.-+-++..|
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~G 29 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYG 29 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTS
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCC
Confidence 45566667777888888888888776655
No 304
>PRK05137 tolB translocation protein TolB; Provisional
Probab=21.39 E-value=6.3e+02 Score=25.11 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCcEEEEEcCCCC-----CCCCCCCeEEEcCCCCCceeeeeee--CCEEEEEEC----CeEEEEcCCCC--ceeEecCCC
Q psy2153 34 DGSVAIFRRGPDG-----QWDLSKYHTVTLGLPHHSVRSLAAV--YNKVWCGYK----NKIHVVDPKSL--KSFDAHPRR 100 (325)
Q Consensus 34 NGtLaVF~R~~~g-----~WD~~~~~~I~LG~~~~PV~cml~v--~~~LW~g~g----nkI~VIn~~Tl--ksf~~~~~~ 100 (325)
||+-++|.....| .||++.-....+.....++...... +++|..... .+||++|.++. +.+..+.
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~-- 289 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSP-- 289 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCC--
Q ss_pred CCceeEEEEeCCeEEEEEeCCC----eEEEEecCccc
Q psy2153 101 ESQVRQMTWAGDGVWVSIRLDS----TLRMYNAHTYQ 133 (325)
Q Consensus 101 ~~~V~~Ma~~G~GVWiS~~~ss----~IrL~ha~T~e 133 (325)
...+...++.+|=|+++..+. .|+++|..+.+
T Consensus 290 -~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 290 -AIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN 325 (435)
T ss_pred -CccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC
No 305
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=21.39 E-value=7.7e+02 Score=24.08 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=37.4
Q ss_pred eEEeCCeEEEEecC--CcEEEEEcCC-CCCCCCCCCeEEEc-CCCCCceeeeeeeCCEEEEEEC-------------CeE
Q psy2153 21 PVHVQGRVVCALAD--GSVAIFRRGP-DGQWDLSKYHTVTL-GLPHHSVRSLAAVYNKVWCGYK-------------NKI 83 (325)
Q Consensus 21 I~~~~~~VfVgLAN--GtLaVF~R~~-~g~WD~~~~~~I~L-G~~~~PV~cml~v~~~LW~g~g-------------nkI 83 (325)
....+++|||+... ..+.+|+.+. .+.|-.-. ++ +.+.. -.++..++++||+--| +.+
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~----~~p~~~r~-~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v 108 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIA----AFPGGPRE-QAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDV 108 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECC----cCCCCCcc-cceEEEECCEEEEEcCCCCCCCCCceeEcccE
Confidence 44568899985443 3567777543 34574111 11 11111 1245677889887433 348
Q ss_pred EEEcCCCCc
Q psy2153 84 HVVDPKSLK 92 (325)
Q Consensus 84 ~VIn~~Tlk 92 (325)
+++|+.+.+
T Consensus 109 ~~YD~~~n~ 117 (376)
T PRK14131 109 YKYDPKTNS 117 (376)
T ss_pred EEEeCCCCE
Confidence 888888763
No 306
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=20.93 E-value=1.3e+02 Score=33.10 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCccceeeCCCceeeeEE--eCCeEEEEecCCcEEEEEcCC
Q psy2153 6 PTPYPLNKILDTALPPVH--VQGRVVCALADGSVAIFRRGP 44 (325)
Q Consensus 6 ~~~L~~IkL~dsVl~I~~--~~~~VfVgLANGtLaVF~R~~ 44 (325)
++.+-.+.++..|.+|.. .+..|.++++||+|-+|+|..
T Consensus 250 l~~~~~i~~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t 290 (753)
T PF11635_consen 250 LRRLDDITLNKRVVSITSPELDIVVAFAFSDGSIEFRDRNT 290 (753)
T ss_pred EEEecccccCCeEEEEEecccCcEEEEEEcCCeEEEEecCc
Confidence 455566777888999887 477899999999999999853
No 307
>KOG1523|consensus
Probab=20.82 E-value=4.2e+02 Score=26.77 Aligned_cols=131 Identities=16% Similarity=0.199 Sum_probs=88.5
Q ss_pred CCCCccceeeCCC-ceeeeEE--eCCeEEEEecCCcEEEEEcCCCCCCCCCCCeEEEcCCCCCceeee--eeeCCEEEEE
Q psy2153 4 PHPTPYPLNKILD-TALPPVH--VQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVRSL--AAVYNKVWCG 78 (325)
Q Consensus 4 ~~~~~L~~IkL~d-sVl~I~~--~~~~VfVgLANGtLaVF~R~~~g~WD~~~~~~I~LG~~~~PV~cm--l~v~~~LW~g 78 (325)
++|++.|.++..| .|++|.. ..|++.-+=+|-.=.|++...+|.|.... .++.+.. -.+|. ...+++.=+|
T Consensus 43 ~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkptl-vLlRiNr---AAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 43 DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTL-VLLRINR---AATCVKWSPKENKFAVG 118 (361)
T ss_pred CCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccce-eEEEecc---ceeeEeecCcCceEEec
Confidence 4699999999998 6677665 45678777788888889877888997432 4455544 34554 4557888888
Q ss_pred ECCeEEEEcCCCC--cee---EecCCCCCceeEEEEeCCeEEEEEeC-CCeEEEEecCccceeeeeecch
Q psy2153 79 YKNKIHVVDPKSL--KSF---DAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIEP 142 (325)
Q Consensus 79 ~gnkI~VIn~~Tl--ksf---~~~~~~~~~V~~Ma~~G~GVWiS~~~-ss~IrL~ha~T~e~LqdIdIa~ 142 (325)
+|.++.-+..-+. ..+ .....-.+.|+++.+.-.+|-.|.-. |...|+|-+. +.+||-.|
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekp 184 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKP 184 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCC
Confidence 8888776664333 111 12223357889999988888877654 7777877653 44555444
Done!