RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2153
(325 letters)
>gnl|CDD|225189 COG2307, COG2307, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 313
Score = 30.0 bits (68), Expect = 1.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 109 WAGDGVWVSIRLDSTLRMYNAH-TYQHLQDVDIEP 142
AGDG W S+ LR +AH TY+ I+P
Sbjct: 187 AAGDGAWESL-----LRSGSAHETYRRRYRAVIDP 216
>gnl|CDD|232918 TIGR00321, dhys, deoxyhypusine synthase. Deoxyhypusine synthase is
responsible for the first step in creating hypusine.
Hypusine is a modified amino acid found in eukaryotes
and in archaea in their respective forms of initiation
factor 5A. Its presence is confirmed in archaeal genera
Pyrococcus (PMID:12761201), Sulfolobus, Halobacterium,
and Haloferax (PMID:10648545), but in an older report
was not detected in Methanococcus voltae (J Biol Chem
1987 Dec 5;262(34):16585-9). This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two [Protein fate, Protein
modification and repair].
Length = 301
Score = 29.3 bits (66), Expect = 3.0
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 236 VFSEPATSVITPGTFIPYCSMAQAQLSFHGHRDAVKFFVSVPGSGGLSAAT 286
VF+ T VI G +P + A L G AV+ P G LS A
Sbjct: 215 VFNSERTGVIILGGGLPKHFILNACLLREGADYAVQITTDQPQDGSLSGAP 265
>gnl|CDD|223378 COG0301, ThiI, Thiamine biosynthesis ATP pyrophosphatase [Coenzyme
metabolism].
Length = 383
Score = 28.8 bits (65), Expect = 3.8
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 19/79 (24%)
Query: 21 PVHVQGRVVCALADG---SVAIF---RRGPDGQWDLSKYHTVTLGLP---HHSVRSLAAV 71
PV QG+V+ L+ G VA + +RG + V G P R
Sbjct: 171 PVGTQGKVLLLLSGGIDSPVAAWLMMKRG-------VEVIPVHFGNPPYTSEKAREKVVA 223
Query: 72 YNKVWC---GYKNKIHVVD 87
+ G K +++VV
Sbjct: 224 LALLRLTSYGGKVRLYVVP 242
>gnl|CDD|130398 TIGR01331, bisphos_cysQ, 3'(2'),5'-bisphosphate nucleotidase,
bacterial. Sulfate is incorporated into
3-phosphoadenylylsulfate, PAPS, for utilization in
pathways such as methionine biosynthesis. Transfer of
sulfate from PAPS to an acceptor leaves adenosine
3'-5'-bisphosphate, APS. This model describes a form
found in bacteria of the enzyme 3'(2'),5'-bisphosphate
nucleotidase, which removes the 3'-phosphate from APS to
regenerate AMP and help drive the cycle [Central
intermediary metabolism, Sulfur metabolism].
Length = 249
Score = 28.2 bits (63), Expect = 5.7
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 30 CALADGSVAIF-RRGPDGQWDLSKYHTV 56
C +A+GS I+ R GP G+WD + H V
Sbjct: 189 CLVAEGSADIYPRLGPTGEWDTAAGHAV 216
>gnl|CDD|235435 PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase;
Provisional.
Length = 767
Score = 28.4 bits (64), Expect = 6.4
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 12/44 (27%)
Query: 80 KNKIHVVDPKSLKSFDAHPR-RESQVRQMTWAGDGVWVSIRLDS 122
NK H + KSL FD RE V+V +D+
Sbjct: 149 DNKPHFFNGKSLPVFDTSQLIREV-----------VYVETPVDT 181
>gnl|CDD|226769 COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].
Length = 137
Score = 27.4 bits (61), Expect = 6.7
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 8/38 (21%)
Query: 20 PPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVT 57
PP + GR +FR+ DG W L+ H
Sbjct: 102 PPADLAGRAT--------YVFRKEADGGWKLAHDHIPN 131
>gnl|CDD|187887 cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Zn-finger domain containing protein, distant homologs of
Cas8 proteins; signature gene for I-C subtype; also
known as Csd1 family.
Length = 569
Score = 28.0 bits (63), Expect = 7.4
Identities = 7/41 (17%), Positives = 14/41 (34%)
Query: 44 PDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKVWCGYKNKIH 84
D L T + +++A + K GY+ +
Sbjct: 275 EDPFAALFDPPDDTKPDDAATTQAVALLLKKPITGYRADLD 315
>gnl|CDD|218205 pfam04674, Phi_1, Phosphate-induced protein 1 conserved region.
Family of conserved plant proteins. Conserved region
identified in a phosphate-induced protein of unknown
function.
Length = 273
Score = 27.7 bits (62), Expect = 7.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 159 IRTLLAETIISPF--GWYANNPADILESFTVC 188
+ LLA T+ +PF G+Y + LE+ + C
Sbjct: 189 LAHLLAGTVTNPFGNGYYQGDATAPLEAASAC 220
>gnl|CDD|222499 pfam14022, DUF4238, Protein of unknown function (DUF4238). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 274 and 374 amino acids in length.
Length = 268
Score = 27.4 bits (61), Expect = 8.7
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 62 HHSVRSLAAVYNKVWCGYKNKIHVVDPKSLKSFDAHPRRESQVR 105
H V Y K + KI V D KS K F+ P+ + +
Sbjct: 2 QHYVP---RFYLKRFADDDKKIWVYDLKSGKIFNKSPKNVASEK 42
>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats
of the cystathionine beta-synthase (CBS pair) domains
in association with the metalloprotease peptidase M50.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 114
Score = 26.5 bits (59), Expect = 9.1
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 18 ALPPVHVQGRVVCALADGSVAIFRRGPDGQWDLSKYHTVTLGLPHHSVR-----SLAAVY 72
V +GR V + S+A R P QW + V V SLA V
Sbjct: 27 RFVVVDNEGRYVGII---SLADLRAIPTSQWAQTTVIQVM-TPAAKLVTVLSEESLAEVL 82
Query: 73 NKVWCGYKNKIHVVDP 88
+ +++ VV+
Sbjct: 83 KLLEEQGLDELAVVED 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.430
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,724,761
Number of extensions: 1564971
Number of successful extensions: 1129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1129
Number of HSP's successfully gapped: 15
Length of query: 325
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 228
Effective length of database: 6,635,264
Effective search space: 1512840192
Effective search space used: 1512840192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)