RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2153
         (325 letters)



>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator
           ChaB {Escherichia coli [TaxId: 562]}
          Length = 75

 Score = 29.1 bits (65), Expect = 0.17
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 18/71 (25%)

Query: 55  TVTLGLPHHSVRSLAAVYNKVWCGYKNKIHVVDPKSLKSFDAHPRRESQVRQMTWA---- 110
           +V   LP H+       +N  W  YK+K    D  S         RE    ++ WA    
Sbjct: 11  SVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDAS---------REETAHKVAWAAVKH 61

Query: 111 -----GDGVWV 116
                 D  W 
Sbjct: 62  EYAKGDDDKWH 72


>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
           megaterium [TaxId: 1404]}
          Length = 453

 Score = 30.8 bits (68), Expect = 0.21
 Identities = 11/102 (10%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 43  GPDGQWDLSKYHTVTLGLPHHSVRSLAAVYNKV---WCGYKNKIHVVDPKSLK-----SF 94
            P    +L     +    P  ++  +A    ++       +   ++   + +K     S 
Sbjct: 5   QPKTFGELKNLPLLNTDKPVQALMKIADELGEIFKFEAPGRVTRYLSSQRLIKEACDESR 64

Query: 95  DAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQ 136
                 ++      +AGDG++ S   +   +  +        
Sbjct: 65  FDKNLSQALKFVRDFAGDGLFTSWTHEKNWKKAHNILLPSFS 106


>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
           {Paracoccus denitrificans [TaxId: 266]}
          Length = 337

 Score = 28.6 bits (62), Expect = 1.1
 Identities = 18/184 (9%), Positives = 46/184 (25%), Gaps = 8/184 (4%)

Query: 77  CGYKNKIHVVDPKS---LKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHT 131
               +K+ V+D +     K         +       A  G   + ++    +L   +  T
Sbjct: 7   PARPDKLVVIDTEKMAVDKVITIADAGPT-PMVPMVAPGGRIAYATVNKSESLVKIDLVT 65

Query: 132 YQHLQDVDIEPYVSKMLGMYTFCSCVTIRTLLAETIISPFGWYANNPADILESF--TVCQ 189
            + L  +D+     ++  ++        +TL                     +       
Sbjct: 66  GETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL 125

Query: 190 SHLLCIASVPGTGKLGFSFVRITALLISSSRLWIGTASGKAPSGVRVFSEPATSVITPGT 249
           S      +      L ++        +      +   +G       + S  A +   P  
Sbjct: 126 SRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV 185

Query: 250 FIPY 253
              +
Sbjct: 186 LAVW 189


>d3d9ra1 d.17.4.27 (A:3-134) Uncharacterized protein ECA1476
           {Pectobacterium atrosepticum [TaxId: 29471]}
          Length = 132

 Score = 27.6 bits (60), Expect = 1.2
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 39  IFRRGPDGQWDLSKYH 54
           + R+   G W  ++Y 
Sbjct: 111 LLRKSATGSWQTARYC 126


>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
           [TaxId: 562]}
          Length = 79

 Score = 25.8 bits (57), Expect = 2.3
 Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 86  VDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVS 145
           +D   LK  +       +    TW+         +  T+ ++N   +     V +     
Sbjct: 9   IDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQH---VPVFVTDE-- 63

Query: 146 KMLGMY 151
            M+G  
Sbjct: 64  -MVGHK 68


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 26.7 bits (58), Expect = 2.8
 Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 119 RLDSTLRMYNAHTYQHLQDVDIEP--YVSKMLGMYTFCSCVTIRTLL 163
            L   ++  +A  Y H Q+  +E   +  + +          + T++
Sbjct: 11  NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWM-NCLLMREFQMGTVI 56


>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 80

 Score = 24.3 bits (53), Expect = 7.8
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 86  VDPKSLKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVS 145
           VD   L+       +  +    TW+     V   +  T+ +YN   +     V I     
Sbjct: 10  VDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQH---VPVYITEN-- 64

Query: 146 KMLGMY 151
            M+G  
Sbjct: 65  -MVGHK 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0431    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,270,432
Number of extensions: 58519
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 11
Length of query: 325
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 239
Effective length of database: 1,226,816
Effective search space: 293209024
Effective search space used: 293209024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)