BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2154
(128 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens
GN=MAPK8IP3 PE=1 SV=3
Length = 1336
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 50/76 (65%), Gaps = 3/76 (3%)
Query: 41 VATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPV 100
++ R ++REQYRQVR HVR DDGRLQA GWSLPAK + P + VPV
Sbjct: 635 TSSARREQKREQYRQVREHVRNDDGRLQACGWSLPAKYKQ---LSPNGGQEDTRMKNVPV 691
Query: 101 PVYCRPLTEKEPGMKV 116
PVYCRPL EK+P MK+
Sbjct: 692 PVYCRPLVEKDPTMKL 707
>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus
GN=Mapk8ip3 PE=1 SV=1
Length = 1337
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 41 VATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPV 100
++ R ++REQYRQVR HVR DDGRLQA GWSLPAK + P + VPV
Sbjct: 636 TSSARREQKREQYRQVREHVRNDDGRLQACGWSLPAKY---KQLSPNGGQEDTRMKNVPV 692
Query: 101 PVYCRPLTEKEPGMKV 116
PVYCRPL EK+P K+
Sbjct: 693 PVYCRPLVEKDPSTKL 708
>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1
SV=1
Length = 1227
Score = 79.0 bits (193), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 49/79 (62%), Gaps = 10/79 (12%)
Query: 38 SEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVP 97
SE+++ RR REQYRQ+RAHV+K+DGRL AYGWSLP S P S
Sbjct: 591 SERISARR----REQYRQLRAHVQKEDGRLHAYGWSLPINKASQEA----NPNRHSG--G 640
Query: 98 VPVPVYCRPLTEKEPGMKV 116
VPVPVYC PL E P MKV
Sbjct: 641 VPVPVYCNPLAEASPHMKV 659
>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura
GN=syd PE=3 SV=2
Length = 1235
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 50/82 (60%), Gaps = 16/82 (19%)
Query: 38 SEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLP---AKLTSTPPVHPLPPPSSSA 94
SE+++ RR REQYRQ+RAHV+K+DGRL AYGWSLP A + P H
Sbjct: 592 SERISARR----REQYRQLRAHVQKEDGRLHAYGWSLPINKANQEANPSRHS-------- 639
Query: 95 QVPVPVPVYCRPLTEKEPGMKV 116
VPVPVYC PL E P MKV
Sbjct: 640 -GGVPVPVYCNPLAEASPHMKV 660
>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1
SV=3
Length = 1157
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 16/77 (20%)
Query: 41 VATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV-PVP 99
++ RRA ERREQY+ VR HV+K+DGR++AYGWSL P+ A+V VP
Sbjct: 520 ISERRAAERREQYKLVREHVKKEDGRIEAYGWSL---------------PNVEAEVSSVP 564
Query: 100 VPVYCRPLTEKEPGMKV 116
+PV CRPL + EP +K+
Sbjct: 565 IPVCCRPLLDNEPSLKI 581
>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus
GN=Spag9 PE=1 SV=2
Length = 1321
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 21 SRPPRLPSMGLGHINSCSEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTS 80
S+ P S ++ +E R ++REQYRQV+AHV+K+DGR+QA+GWSLP K
Sbjct: 597 SQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQ 656
Query: 81 TPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEPGMKV 116
+ +PVPVY RPL EK+ MK+
Sbjct: 657 VA-----NGQGETKMKNLPVPVYLRPLDEKDASMKL 687
>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens
GN=SPAG9 PE=1 SV=4
Length = 1321
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 21 SRPPRLPSMGLGHINSCSEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTS 80
S+ P S ++ +E R ++REQYRQV+AHV+K+DGR+QA+GWSLP K
Sbjct: 597 SQLPGDKSKAFDFLSEETEASLASRREQKREQYRQVKAHVQKEDGRVQAFGWSLPQKYKQ 656
Query: 81 TPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEPGMKV 116
+ +PVPVY RPL EK+ MK+
Sbjct: 657 VT-----NGQGENKMKNLPVPVYLRPLDEKDTSMKL 687
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 55 QVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV 96
Q+ + + +D +L Y ++PA + P +HP PP SA V
Sbjct: 458 QLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAYV 499
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 55 QVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV 96
Q+ + + +D +L Y ++PA + P +HP PP SA V
Sbjct: 465 QLHSAIGQDQRQLFLYKVTIPALASQNPAIHPFTPPKLSAYV 506
>sp|Q39ZK0|GATA_GEOMG Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter
metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)
GN=gatA PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQEMAI 124
P S V VPVP Y + LT G+K+ +P+E I
Sbjct: 234 PMDSTSVEVPVPDYAKGLTGDVKGLKLGLPKEYYI 268
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 55 QVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV 96
Q+ + + +D +L Y ++PA + P +HP PP SA V
Sbjct: 466 QLHSAIGQDQRQLFLYKITIPALASQNPAIHPFTPPKLSAFV 507
>sp|A5G9J9|GATA_GEOUR Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter
uraniireducens (strain Rf4) GN=gatA PE=3 SV=1
Length = 485
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQEMAI 124
P S V +PVP Y + L+ G+K+ +P+E I
Sbjct: 234 PKDSTSVDLPVPDYSKALSNDVKGLKIGLPKEYFI 268
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 55 QVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV 96
Q+ + + +D +L Y ++PA + P +HP PP SA V
Sbjct: 466 QLHSAIGQDQRQLFLYKVTIPALASQNPAIHPFIPPKLSAYV 507
>sp|Q93LE2|GATA_GEOSE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus
stearothermophilus GN=gatA PE=3 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQE 121
P S VPVP Y LT G+K++VP E
Sbjct: 235 PMDSTSANVPVPNYVEALTGDIKGLKIAVPNE 266
>sp|B9LZ18|GATA_GEOSF Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacter sp.
(strain FRC-32) GN=gatA PE=3 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 93 SAQVPVPVPVYCRPLTEKEPGMKVSVPQEMAI 124
S V +PVP Y + LT + G+K+ +P+E I
Sbjct: 237 STSVDLPVPEYTKALTGQVKGLKIGLPREYFI 268
>sp|Q5L3B3|GATA_GEOKA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Geobacillus
kaustophilus (strain HTA426) GN=gatA PE=3 SV=1
Length = 485
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQE 121
P S +PVP Y LT G+K++VP+E
Sbjct: 235 PMDSTSANIPVPNYVEALTGDIKGLKIAVPKE 266
>sp|Q5WJ20|GATA_BACSK Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bacillus clausii
(strain KSM-K16) GN=gatA PE=3 SV=1
Length = 483
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQEMAIGDFV 128
P+ S +PVP Y LT + G+++ VP E IGD V
Sbjct: 233 PADSTSADLPVPPYRESLTGEIKGLRIGVPSEY-IGDGV 270
>sp|B8FCK9|GATA_DESAA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum
alkenivorans (strain AK-01) GN=gatA PE=3 SV=1
Length = 485
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 90 PSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQE 121
PS S V V VP Y + E GM+V +P+E
Sbjct: 234 PSDSTSVNVEVPDYTTAIQEDVKGMRVGMPKE 265
>sp|Q7N8M0|Y699_PHOLL UPF0294 protein plu0699 OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=plu0699 PE=3 SV=1
Length = 260
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 83 PVHPLPP-PSSSAQVPVPVPVYCRPLTEKEPGMKVS 117
P LP PS + PVYC PL EKEP +++S
Sbjct: 99 PAFLLPQHPSGVMTLATSHPVYCCPLREKEPLLRLS 134
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,509,479
Number of Sequences: 539616
Number of extensions: 2065030
Number of successful extensions: 14064
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 13220
Number of HSP's gapped (non-prelim): 869
length of query: 128
length of database: 191,569,459
effective HSP length: 94
effective length of query: 34
effective length of database: 140,845,555
effective search space: 4788748870
effective search space used: 4788748870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)