Query psy2154
Match_columns 128
No_of_seqs 50 out of 52
Neff 2.8
Searched_HMMs 46136
Date Fri Aug 16 17:40:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2077|consensus 100.0 2.1E-43 4.5E-48 318.2 7.7 99 21-127 487-587 (832)
2 PF10782 DUF2602: Protein of u 47.7 7.4 0.00016 26.5 0.4 19 56-74 23-41 (58)
3 PF14925 HPHLAWLY: Domain of u 35.4 27 0.00058 33.3 2.1 19 47-65 249-267 (640)
4 COG1770 PtrB Protease II [Amin 28.6 73 0.0016 30.7 3.8 61 38-112 51-111 (682)
5 PF12350 CTK3_C: CTD kinase su 27.2 76 0.0017 22.0 2.8 25 41-65 5-29 (70)
6 PF11671 Apis_Csd: Complementa 25.6 28 0.00062 27.6 0.5 9 97-105 83-91 (146)
7 PF14306 PUA_2: PUA-like domai 19.3 84 0.0018 24.3 1.9 24 50-77 59-82 (160)
8 TIGR01898 cas_TM1791_cmr6 CRIS 18.6 88 0.0019 24.0 1.9 47 2-48 2-48 (176)
9 KOG4013|consensus 17.9 52 0.0011 28.1 0.6 10 97-106 57-68 (255)
10 cd03378 beta_CA_cladeC Carboni 17.3 1.2E+02 0.0025 23.4 2.3 29 46-74 111-144 (154)
No 1
>KOG2077|consensus
Probab=100.00 E-value=2.1e-43 Score=318.17 Aligned_cols=99 Identities=41% Similarity=0.756 Sum_probs=91.9
Q ss_pred CCCCCCCcCCCCCCCCcchHHHHHHHHHHHHHHHHHHHhhhccCCceeeecccCCCCCCCCCCCCCCCCCCCCCCC--Cc
Q psy2154 21 SRPPRLPSMGLGHINSCSEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQV--PV 98 (128)
Q Consensus 21 ~~~~~~~~~~~~~~~~~se~~s~~Rr~erREQYRqVRaHVrkedGRlQAyGWSLP~k~~~~~~~~p~~~~g~~e~~--~V 98 (128)
+-||---|++|+||+++ ++++++||+||||||||||+||+|||||+||||||||.||+|.. .|+.+++ ||
T Consensus 487 ~~p~~~~s~~~~f~~~~-d~~s~~RreqkREQYrqVreHV~keDGRvqA~GWSLP~kykq~t-------~gq~e~~mknv 558 (832)
T KOG2077|consen 487 SQPPGDKSKAFDFLSEE-DASSASRREQKREQYRQVREHVQKEDGRVQAFGWSLPQKYKQVT-------NGQGENKMKNV 558 (832)
T ss_pred ccCCccccccccccChh-hhhhHHHHHHHHHHHHHHHHHhhccccceeeeccccchhhhccC-------CCccccccccC
Confidence 34777789999999999 99999999999999999999999999999999999999999983 4667777 99
Q ss_pred CceeecccCcCCCCCCeeeeeccccccCC
Q psy2154 99 PVPVYCRPLTEKEPGMKVSVPQEMAIGDF 127 (128)
Q Consensus 99 PVPVyCRPL~ekdpsMKlWCAagVnl~~~ 127 (128)
|||||||||+++||+||||||+||||+|-
T Consensus 559 PvPVycRPL~~kdpsmKlWCA~GVnLsGg 587 (832)
T KOG2077|consen 559 PVPVYCRPLDKKDPSMKLWCAVGVNLSGG 587 (832)
T ss_pred CcceeecccccCCcceeeeeecceeccCC
Confidence 99999999999999999999999999873
No 2
>PF10782 DUF2602: Protein of unknown function (DUF2602); InterPro: IPR019718 This bacterial family of proteins that has no known function.
Probab=47.71 E-value=7.4 Score=26.48 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=16.9
Q ss_pred HHHhhhccCCceeeecccC
Q psy2154 56 VRAHVRKDDGRLQAYGWSL 74 (128)
Q Consensus 56 VRaHVrkedGRlQAyGWSL 74 (128)
|++|.+|+.|+.+||.|-+
T Consensus 23 lk~~~rk~~gk~~ah~fCI 41 (58)
T PF10782_consen 23 LKKHFRKEKGKTYAHSFCI 41 (58)
T ss_pred hHHHhHHHhcccccchHHH
Confidence 4899999999999998865
No 3
>PF14925 HPHLAWLY: Domain of unknown function
Probab=35.39 E-value=27 Score=33.25 Aligned_cols=19 Identities=37% Similarity=0.590 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhhhccCC
Q psy2154 47 NERREQYRQVRAHVRKDDG 65 (128)
Q Consensus 47 ~erREQYRqVRaHVrkedG 65 (128)
-|||||||...+++-+...
T Consensus 249 hEkREqYRK~Q~qmlg~K~ 267 (640)
T PF14925_consen 249 HEKREQYRKMQAQMLGTKL 267 (640)
T ss_pred eHHHHHHHHHHHHhhcccc
Confidence 4789999999999887643
No 4
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=28.58 E-value=73 Score=30.68 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=36.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhccCCceeeecccCCCCCCCCCCCCCCCCCCCCCCCCcCceeecccCcCCCC
Q psy2154 38 SEKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEP 112 (128)
Q Consensus 38 se~~s~~Rr~erREQYRqVRaHVrkedGRlQAyGWSLP~k~~~~~~~~p~~~~g~~e~~~VPVPVyCRPL~ekdp 112 (128)
++...+.-+.-|.+.|+++|..++-+ -||+|.+...= .=.+.-..+-+-|+|||-+++.++
T Consensus 51 t~~~~a~~~~L~~~if~Ei~~Rik~d-------d~Svp~~~~~~-------~Yy~r~~~g~~y~~~~R~~~~g~~ 111 (682)
T COG1770 51 TEAVMAHLQPLQKKIFEEIKGRIKED-------DLSVPYRKGPY-------EYYSRTEEGKEYPIYCRQPDEGGE 111 (682)
T ss_pred HHHhhhhhHHHHHHHHHHHhhhccCc-------CCCCccccCCe-------eEEEEecCCCcceeEEeccCCCCC
Confidence 34444444566667788776555544 58999775431 011122226778999997776655
No 5
>PF12350 CTK3_C: CTD kinase subunit gamma CTK3 C-terminus; InterPro: IPR024637 The C-terminal domain kinase (CTDK-1), is a three-subunit complex comprised of Ctk1, Ctk2, and Ctk3, that plays a key role in regulation of transcription and translation and in coordinating these two processes. Both Ctk2 and Ctk3 are regulated at the level of protein turnover, and are unstable proteins processed through a ubiquitin-proteasome pathway. Their physical interaction is required to protect both subunits from degradation, and both Ctk2 and Ctk3 are required for Ctk1 CTD kinase activation []. This entry represents the C-terminal domain of Ctk3.
Probab=27.17 E-value=76 Score=22.02 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC
Q psy2154 41 VATRRANERREQYRQVRAHVRKDDG 65 (128)
Q Consensus 41 ~s~~Rr~erREQYRqVRaHVrkedG 65 (128)
.-.+|=++.||..+..|+++|-..+
T Consensus 5 qIl~RmEeDRERHKRlrE~~W~v~~ 29 (70)
T PF12350_consen 5 QILQRMEEDRERHKRLRENIWVVPR 29 (70)
T ss_pred HHHHHHHHhHHHHHHHHhhcceeCC
Confidence 3457889999999999999987653
No 6
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=25.57 E-value=28 Score=27.61 Aligned_cols=9 Identities=56% Similarity=1.154 Sum_probs=7.8
Q ss_pred CcCceeecc
Q psy2154 97 PVPVPVYCR 105 (128)
Q Consensus 97 ~VPVPVyCR 105 (128)
.|||||||+
T Consensus 83 QIPVPvyy~ 91 (146)
T PF11671_consen 83 QIPVPVYYG 91 (146)
T ss_pred ecccceEec
Confidence 599999994
No 7
>PF14306 PUA_2: PUA-like domain; PDB: 1M8P_C 1I2D_B 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2OFX_B 1J70_B 1G8F_A ....
Probab=19.27 E-value=84 Score=24.34 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhccCCceeeecccCCCC
Q psy2154 50 REQYRQVRAHVRKDDGRLQAYGWSLPAK 77 (128)
Q Consensus 50 REQYRqVRaHVrkedGRlQAyGWSLP~k 77 (128)
+++|.+|-..++=.||.+ |++|-.
T Consensus 59 ~~dy~~V~~~~rL~~G~~----wpiPI~ 82 (160)
T PF14306_consen 59 EEDYESVLETMRLPDGTL----WPIPIV 82 (160)
T ss_dssp HHHHHHHHHHSBETTSSB------S---
T ss_pred HHHHHHHHhhCCcCCCCE----EeEEEE
Confidence 678999999999999988 999943
No 8
>TIGR01898 cas_TM1791_cmr6 CRISPR-associated RAMP protein, Cmr6 family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.
Probab=18.59 E-value=88 Score=23.96 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=37.9
Q ss_pred chhhhhhhhccCCCCCCcCCCCCCCCcCCCCCCCCcchHHHHHHHHH
Q psy2154 2 EYIERTKLMMGSGSSDRMDSRPPRLPSMGLGHINSCSEKVATRRANE 48 (128)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~se~~s~~Rr~e 48 (128)
|+.-.+.|.+|+|.+.-.|.--.+-+..|+-++|.+|-+-..|-..+
T Consensus 2 ~~~~~s~l~vG~G~~~~~e~~l~~~~~~g~PyIPGSSlKG~lR~~~~ 48 (176)
T TIGR01898 2 KLKTSSRLLVGLGNPHIYETGLTLDPIYGLPYIPGSAIKGVLRSATF 48 (176)
T ss_pred EEEEcCCeEEeCCCCccccCceEEeeccCcceecCchHHHHHHHHHH
Confidence 34456889999999987787777888899999999999877765444
No 9
>KOG4013|consensus
Probab=17.89 E-value=52 Score=28.09 Aligned_cols=10 Identities=60% Similarity=1.663 Sum_probs=8.7
Q ss_pred CcCceeec--cc
Q psy2154 97 PVPVPVYC--RP 106 (128)
Q Consensus 97 ~VPVPVyC--RP 106 (128)
.+|+|||| ||
T Consensus 57 ~~~iP~ycMiRp 68 (255)
T KOG4013|consen 57 KYPIPLYCMIRP 68 (255)
T ss_pred ccccceEEEEec
Confidence 89999999 55
No 10
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=17.28 E-value=1.2e+02 Score=23.39 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHh--hhc---cCCceeeecccC
Q psy2154 46 ANERREQYRQVRAH--VRK---DDGRLQAYGWSL 74 (128)
Q Consensus 46 r~erREQYRqVRaH--Vrk---edGRlQAyGWSL 74 (128)
++.-++|-+.+++| |.+ ++|++..|||-.
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vy 144 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYY 144 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEE
Confidence 45668889999988 444 368899999964
Done!