Query psy2154
Match_columns 128
No_of_seqs 50 out of 52
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 17:40:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8tfv_A Protein (thanatin); bac 29.6 15 0.0005 19.9 0.5 7 99-105 5-12 (21)
2 3qwl_A TBC1 domain family memb 25.9 70 0.0024 25.3 4.0 28 31-59 65-92 (294)
3 1ako_A Exonuclease III; AP-end 24.6 59 0.002 22.6 3.0 26 46-71 122-150 (268)
4 1j7m_A Matrix metalloproteinas 18.5 55 0.0019 21.8 1.7 18 107-124 38-55 (72)
5 3lm3_A Uncharacterized protein 14.3 44 0.0015 29.2 0.5 15 47-61 82-96 (449)
6 2jc5_A Exodeoxyribonuclease; h 13.2 1.6E+02 0.0055 20.2 3.1 27 45-71 119-148 (259)
7 2bx2_L Ribonuclease E, RNAse E 12.0 1.6E+02 0.0056 25.7 3.4 27 47-73 361-387 (517)
8 3rz3_A Ubiquitin-conjugating e 10.5 33 0.0011 25.3 -1.3 26 50-75 157-183 (183)
9 2ytv_A Cold shock domain-conta 9.7 39 0.0013 22.2 -1.1 24 13-37 3-26 (79)
10 1tvg_A LOC51668 protein; cell 9.7 1.3E+02 0.0043 21.7 1.6 19 57-75 8-26 (153)
No 1
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=29.65 E-value=15 Score=19.92 Aligned_cols=7 Identities=71% Similarity=1.962 Sum_probs=4.6
Q ss_pred Cce-eecc
Q psy2154 99 PVP-VYCR 105 (128)
Q Consensus 99 PVP-VyCR 105 (128)
||| +||.
T Consensus 5 pvpiiycn 12 (21)
T 8tfv_A 5 PVPIIYCN 12 (26)
T ss_dssp CCCCEEEE
T ss_pred cccEEEEc
Confidence 555 7884
No 2
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=25.85 E-value=70 Score=25.28 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=21.2
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHh
Q psy2154 31 LGHINSCSEKVATRRANERREQYRQVRAH 59 (128)
Q Consensus 31 ~~~~~~~se~~s~~Rr~erREQYRqVRaH 59 (128)
+|.+|..+++-. .-.++||++|.++..+
T Consensus 65 lGylP~~~~~~~-~~l~~kr~eY~~l~~~ 92 (294)
T 3qwl_A 65 LGILPPHHESHA-KVMMYRKEQYLDVLHA 92 (294)
T ss_dssp TTSSCSBGGGHH-HHHHHHHHHHHHHHHH
T ss_pred cCCCCCCchhHH-HHHHHHHHHHHHHHHh
Confidence 677888877633 3467889999998776
No 3
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=24.56 E-value=59 Score=22.63 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhhc---cCCceeeec
Q psy2154 46 ANERREQYRQVRAHVRK---DDGRLQAYG 71 (128)
Q Consensus 46 r~erREQYRqVRaHVrk---edGRlQAyG 71 (128)
...|.+|++++.+++.+ .++.+.++|
T Consensus 122 ~~~r~~~~~~l~~~~~~~~~~~~~~Il~G 150 (268)
T 1ako_A 122 FPAKAQFYQNLQNYLETELKRDNPVLIMG 150 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCEEEEe
Confidence 34567899999999984 356666665
No 4
>1j7m_A Matrix metalloproteinase 2; beta sheet, alpha helix, hydrolase; NMR {Homo sapiens} SCOP: g.14.1.2
Probab=18.50 E-value=55 Score=21.78 Aligned_cols=18 Identities=6% Similarity=-0.062 Sum_probs=13.4
Q ss_pred CcCCCCCCeeeeeccccc
Q psy2154 107 LTEKEPGMKVSVPQEMAI 124 (128)
Q Consensus 107 L~ekdpsMKlWCAagVnl 124 (128)
..+-....|+|||+-.|.
T Consensus 38 t~~g~~~~~~WCaTT~ny 55 (72)
T 1j7m_A 38 TSAGRSDGKMWCATTANY 55 (72)
T ss_dssp BCTTCSSSCCEEESSSBH
T ss_pred ccCCCCCCceeecCcccc
Confidence 345566799999998773
No 5
>3lm3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.44A {Parabacteroides distasonis}
Probab=14.30 E-value=44 Score=29.21 Aligned_cols=15 Identities=33% Similarity=0.669 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhh
Q psy2154 47 NERREQYRQVRAHVR 61 (128)
Q Consensus 47 ~erREQYRqVRaHVr 61 (128)
+..|.||||||+.|-
T Consensus 82 ed~rp~yrqIr~Yv~ 96 (449)
T 3lm3_A 82 EDGRKNYREIRDYVV 96 (449)
T ss_dssp HCCSHHHHHHHHHHH
T ss_pred ccCChhHHHHHHHHH
Confidence 345889999998886
No 6
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=13.21 E-value=1.6e+02 Score=20.21 Aligned_cols=27 Identities=7% Similarity=0.050 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHhhhcc---CCceeeec
Q psy2154 45 RANERREQYRQVRAHVRKD---DGRLQAYG 71 (128)
Q Consensus 45 Rr~erREQYRqVRaHVrke---dGRlQAyG 71 (128)
|..+|.+|++++.+++... ++.+.++|
T Consensus 119 r~~~~~~~~~~l~~~~~~~~~~~~~~Il~G 148 (259)
T 2jc5_A 119 RQQVKYRFLDAFYPMLEAMKNEGRDIVVCG 148 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4556668889998888753 55666655
No 7
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=12.04 E-value=1.6e+02 Score=25.68 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhhhccCCceeeeccc
Q psy2154 47 NERREQYRQVRAHVRKDDGRLQAYGWS 73 (128)
Q Consensus 47 ~erREQYRqVRaHVrkedGRlQAyGWS 73 (128)
+.+++-++.+++.+.+|.-|.|..|||
T Consensus 361 ~~r~~v~~~l~~al~~Dr~k~~v~~~S 387 (517)
T 2bx2_L 361 RHQRAVENRLREAVRQDRARIQISHIS 387 (517)
T ss_dssp HHHHHHHHHHHHHTTTCSSCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEeccC
Confidence 455788999999999999999999999
No 8
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=10.49 E-value=33 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=19.7
Q ss_pred HHHH-HHHHHhhhccCCceeeecccCC
Q psy2154 50 REQY-RQVRAHVRKDDGRLQAYGWSLP 75 (128)
Q Consensus 50 REQY-RqVRaHVrkedGRlQAyGWSLP 75 (128)
+++| +.||++|.+...-...+||-+|
T Consensus 157 ~~~y~~~v~~~v~~s~~~~~~~g~~vp 183 (183)
T 3rz3_A 157 DREYTDIIRKQVLGTKVDAERDGVKVP 183 (183)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 3445 5689999998877888999876
No 9
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=9.73 E-value=39 Score=22.20 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCCCCcCCCCCCCCcCCCCCCCCc
Q psy2154 13 SGSSDRMDSRPPRLPSMGLGHINSC 37 (128)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (128)
||||.|...+--.+ .+||+|+-.+
T Consensus 3 ~~~~~~~~G~V~~~-~KGfGFI~~d 26 (79)
T 2ytv_A 3 SGSSGLRRATVECV-KDQFGFINYE 26 (79)
T ss_dssp CCCCSBCCEEEEEC-CSSEEEESCC
T ss_pred CCCCCcccEEEEEe-cccceeEeCC
Confidence 67776555444444 5999999765
No 10
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9 PDB: 1xpw_A
Probab=9.71 E-value=1.3e+02 Score=21.68 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=11.6
Q ss_pred HHhhhccCCceeeecccCC
Q psy2154 57 RAHVRKDDGRLQAYGWSLP 75 (128)
Q Consensus 57 RaHVrkedGRlQAyGWSLP 75 (128)
-+|+|+.|..+-..||.+=
T Consensus 8 ~~~~~~~~~~~~~~g~~v~ 26 (153)
T 1tvg_A 8 HSHMRKIDLCLSSEGSEVI 26 (153)
T ss_dssp ------CBTTCGGGTCEEE
T ss_pred hhhhhccccccccCCcEEE
Confidence 4799999999999999864
Done!