RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2154
(128 letters)
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 29.5 bits (67), Expect = 0.40
Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 39 EKVATRRANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPV 98
KV +RA ++ ++ R+ K P + P P AQ P
Sbjct: 108 AKVQAQRAEQQAKK-REAAGEKEKA-----------PRRERKPKPKAPRKKRKPRAQKPE 155
Query: 99 PVPVYCRPLTEKEPGMKVSV 118
P ++E G V V
Sbjct: 156 PQHTPVSDISELTVGQAVKV 175
>gnl|CDD|235819 PRK06519, PRK06519, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 398
Score = 28.4 bits (64), Expect = 0.99
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 83 PVHPLPPPSSSAQVP 97
PVHPLP S Q+P
Sbjct: 48 PVHPLPEIDWSQQIP 62
>gnl|CDD|219459 pfam07540, NOC3p, Nucleolar complex-associated protein. Nucleolar
complex-associated protein (Noc3p) is conserved in
eukaryotes and has essential roles in replication and
rRNA processing in Saccharomyces cerevisiae.
Length = 95
Score = 27.2 bits (61), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 94 AQVPV---PVPVYC-RPLTEKEPGMKVS 117
+ + V +P Y RPLTE+E KVS
Sbjct: 48 SLLEVFKDIIPGYRIRPLTEEEKKEKVS 75
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 28.0 bits (63), Expect = 1.5
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 54 RQVRAHVRKDD-GRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVP 101
R ++ +D GR+ PA+L T P P P V +PV
Sbjct: 220 RVIKLRPTRDALGRVLT-----PARLWLTASESPPPSP-PPGPVGLPVD 262
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I
metabotropic glutamate receptor. Ligand binding domain
of the group I metabotropic glutamate receptor, a family
containing mGlu1R and mGlu5R, all of which stimulate
phospholipase C (PLC) hydrolysis. The metabotropic
glutamate receptor is a member of the family C of
G-protein-coupled receptors that transduce extracellular
signals into G-protein activation and ultimately into
intracellular responses. The mGluRs are classified into
three groups which comprise eight subtypes.
Length = 472
Score = 27.9 bits (62), Expect = 1.7
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 4 IERTKLMMGSGSSDRMDSRPPRLPSMGLG-HI-NSC-SEKVATRRANERREQYRQVRAHV 60
I+R + M + DR+++ P LP++ LG I +SC VA ++ E R +
Sbjct: 41 IQRVEAMFHT--LDRINADPVLLPNITLGCEIRDSCWHSSVALEQSIEF---IRDSLISI 95
Query: 61 RKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPV 98
R + + G S + P V + P SSS + V
Sbjct: 96 RDEKDGVNPDGQSPGPNKSKKPIVGVIGPGSSSVAIQV 133
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 27.9 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 79 TSTPPVHPLPPPSSSAQVPVPV-PVYCRPLTEKE 111
P P + A +PV P Y P KE
Sbjct: 419 PPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
>gnl|CDD|182858 PRK10947, PRK10947, global DNA-binding transcriptional dual
regulator H-NS; Provisional.
Length = 135
Score = 27.2 bits (60), Expect = 2.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 47 NERREQYRQVRAHVRKDDGRLQAY 70
NERRE+ A V + +LQ Y
Sbjct: 38 NERREEESAAAAEVEERTRKLQQY 61
>gnl|CDD|218942 pfam06218, NPR2, Nitrogen permease regulator 2. This family of
regulators are involved in post-translational control of
nitrogen permease.
Length = 400
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 83 PVHPLPPPSSSAQVPV 98
P+ P PPP S QVP+
Sbjct: 167 PILPPPPPIKSHQVPI 182
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 26.6 bits (59), Expect = 4.1
Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 75 PAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEPGMKVSVPQEMAI 124
P + P P P+++A P P P P A
Sbjct: 393 PVAQAAAAPA-PAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAA 441
>gnl|CDD|235454 PRK05421, PRK05421, hypothetical protein; Provisional.
Length = 263
Score = 26.1 bits (58), Expect = 5.5
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 101 PVYCRPLTEKEP 112
PVYC PL E+EP
Sbjct: 118 PVYCCPLREREP 129
>gnl|CDD|130264 TIGR01196, edd, 6-phosphogluconate dehydratase. A close homolog,
designated MocB (mannityl opine catabolism), is found in
a mannopine catabolism region of a plasmid of
Agrobacterium tumefaciens. However, it is not essential
for mannopine catabolism, branches within the cluster of
6-phosphogluconate dehydratases (with a short branch
length) in a tree rooted by the presence of other
dehydyatases. It may represent an authentic
6-phosphogluconate dehydratase, redundant with the
chromosomal copy shown to exist in plasmid-cured
strains. This model includes mocB above the trusted
cutoff, although the designation is somewhat tenuous
[Energy metabolism, Entner-Doudoroff].
Length = 601
Score = 25.9 bits (57), Expect = 6.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 93 SAQVPVPVPVYCRPLTEKEPGMKVSV 118
AQV VP C +T+ GM++S+
Sbjct: 100 VAQVAGGVPAMCDGVTQGYDGMELSL 125
>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A;
Reviewed.
Length = 459
Score = 25.8 bits (58), Expect = 7.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 96 VPVPVPVYCRPLTEKEPGMKVSVPQE 121
VPVP Y L + G+K+ VP+E
Sbjct: 226 ADVPVPDYTAALGKDIKGLKIGVPKE 251
>gnl|CDD|204155 pfam09160, FimH_man-bind, FimH, mannose binding. Members of this
family adopt a secondary structure consisting of a beta
sandwich, with nine strands arranged in two sheets in a
Greek key topology. They are predominantly found in
bacterial mannose-specific adhesins, since they are
capable of binding to D-mannose.
Length = 147
Score = 25.5 bits (56), Expect = 8.0
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 65 GRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRP 106
G L YG + P +T+ + P+PV +Y P
Sbjct: 71 GSLYWYGSTYPFPMTTQTNEAVI---QDGTYKPLPVKLYLTP 109
>gnl|CDD|225953 COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 1036
Score = 25.9 bits (57), Expect = 8.3
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 6/51 (11%)
Query: 48 ERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPV 98
E + G L AY +L + V +P + +A +
Sbjct: 425 ESGSTDYLSSFFDKNWAGELTAY------QLDTDGTVTGVPTANWNAAKLL 469
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 25.6 bits (56), Expect = 8.7
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 3 YIERTKLMMGSGSSDRMDSRPPR------LPSMGLGHINSCSEKVATRRANERREQYRQV 56
R +G+ S S PP + S R R + R
Sbjct: 2 QAHRLIGQLGAFSPHPGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLG 61
Query: 57 RAHVRKDDGR---LQAYGWSLPAKLTSTPPVHPLPPPSS 92
V G+ + G +L + PV LPPPS
Sbjct: 62 DTEVGSAAGKEIDVATLG-NLCVDIVL--PVPELPPPSR 97
>gnl|CDD|204508 pfam10539, Dev_Cell_Death, Development and cell death domain. The
DCD domain is found in plant proteins involved in
development and cell death. The DCD domain is an
approximately 130 amino acid long stretch that contains
several mostly invariable motifs. These include a FGLP
and a LFL motif at the N-terminus and a PAQV and a PLxE
motif towards the C-terminus of the domain. The DCD
domain is present in proteins with different
architectures. Some of these proteins contain additional
recognisable motifs, like the KELCH repeats or the ParB
domain.
Length = 130
Score = 25.0 bits (55), Expect = 9.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 93 SAQVPVPVPVYCRPLTEKE 111
AQV + C+PL E +
Sbjct: 81 PAQVRFRIRKDCKPLPESK 99
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0604 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,564,548
Number of extensions: 549891
Number of successful extensions: 923
Number of sequences better than 10.0: 1
Number of HSP's gapped: 906
Number of HSP's successfully gapped: 68
Length of query: 128
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 42
Effective length of database: 7,123,158
Effective search space: 299172636
Effective search space used: 299172636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)