RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2154
(128 letters)
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 34.1 bits (79), Expect = 0.006
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 39 EKVATRRANERREQYRQVRAHVRKDDGRLQAYGWS-LPAKLTSTPPVHPLPPPSSSAQVP 97
EK+ +R +R + ++ D + ++ + + T PL +
Sbjct: 13 EKMKNKREEKRAQNSELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVTDPIEEHR 72
Query: 98 VPVPVYCRPLTEKEPGMK----VSVPQE 121
+ V V RPL ++E K +SVP +
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSK 100
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 32.1 bits (72), Expect = 0.035
Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 73 SLPAKLTSTPPVHPLPPPSSSAQVPVPV-PVYCRPLTEKEPGMKVSVP 119
++ A T PV P P + P+ P P E EP V P
Sbjct: 302 NINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 28.7 bits (65), Expect = 0.47
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 47 NERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRP 106
+ V + + + +T HPL + + V V RP
Sbjct: 2 GSSHHHHHHSSGLVPRGSSFPNWEFARMIKEFRATLECHPLTMTDPIEEHRICVCVRKRP 61
Query: 107 LTEKEPGMK----VSVPQE 121
L ++E K +S+P +
Sbjct: 62 LNKQELAKKEIDVISIPSK 80
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 27.3 bits (60), Expect = 1.4
Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 12/66 (18%)
Query: 46 ANERREQYRQVRAHVRKDDGRLQAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCR 105
N+ E + R H D R +A P + P PPP S
Sbjct: 3 VNDNEEGFFSARGHRPLDKKREEA------------PSLRPAPPPISGGGYRARPAKAAA 50
Query: 106 PLTEKE 111
+ E
Sbjct: 51 TQKKVE 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.6
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 14/80 (17%)
Query: 24 PRLPSMGLGHINSCSEK------VATRRANERREQYRQVRAHVR--KDDGRLQAYG---- 71
R PSM ++ V + R + Y ++R + + + G
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 72 --WSLPAKLTSTPPVHPLPP 89
+ + + V
Sbjct: 162 GKTWVALDVCLSYKVQCKMD 181
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 27.1 bits (61), Expect = 1.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 96 VPVPVPVYCRPLTEKEPGMKVSVPQE 121
VPVP + + ++ G+K+ +P+E
Sbjct: 234 AKVPVPEWSEEVKKEVKGLKIGLPKE 259
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 27.1 bits (61), Expect = 2.0
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 96 VPVPVPVYCRPLTEKEPGMKVSVPQE 121
PV + + + G+KV++P+E
Sbjct: 241 APVDDVDFTSEIGKDIKGLKVALPKE 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 2.5
Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 34/105 (32%)
Query: 15 SSDRMDSRPPRLPSMGLGHINSCSEKVATRRANERREQYRQV---------RAHVRKDDG 65
++D + P L LG+++S E + Q+ QV ++ +D
Sbjct: 49 AADDEPTTPAELVGKFLGYVSSLVEP-------SKVGQFDQVLNLCLTEFENCYLEGND- 100
Query: 66 RLQAYGWSLPAKLTSTPPV----------------HPLPPPSSSA 94
+ A L + +T P S+SA
Sbjct: 101 -IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Score = 26.6 bits (58), Expect = 3.1
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 30/66 (45%)
Query: 29 MGLGHINSCSEKVATRRANERREQYRQVRAHV--RKDDGRLQAYGWSL-------PAKLT 79
MG+ + + + + V R D+ YG+S+ P LT
Sbjct: 1631 MGM----------------DLYKTSKAAQD-VWNRADNHFKDTYGFSILDIVINNPVNLT 1673
Query: 80 STPPVH 85
+H
Sbjct: 1674 ----IH 1675
Score = 26.2 bits (57), Expect = 4.0
Identities = 17/113 (15%), Positives = 26/113 (23%), Gaps = 42/113 (37%)
Query: 30 GLGHINSCSEKVATRRANERREQYR----QVRAHVRKDDGRLQAYGWSLPAKLTSTPPVH 85
G G+ + E E R+ Y+ V ++ L L V
Sbjct: 162 GQGNTDDYFE--------ELRDLYQTYHVLVGDLIKFSAETLS----ELIRTTLDAEKVF 209
Query: 86 P--------------LPPPSSSAQVPVPVP-----------VYCRPLTEKEPG 113
P +P+ P V + L PG
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL-GFTPG 261
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 26.0 bits (58), Expect = 3.9
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 79 TSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKE 111
+ P + + V V RPL +E
Sbjct: 6 MDISGGNTSRQPQKKSNQNIQVYVRVRPLNSRE 38
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 150
Score = 25.7 bits (57), Expect = 3.9
Identities = 6/24 (25%), Positives = 7/24 (29%)
Query: 79 TSTPPVHPLPPPSSSAQVPVPVPV 102
T+ P Q P P P
Sbjct: 123 TTAPTKKTTLKMKKKKQCPFPHPE 146
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37,
MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C
2f66_C
Length = 192
Score = 25.6 bits (55), Expect = 4.9
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 80 STPPVHPLPPPSSSAQVPVPVPVYCRPLTEKE 111
P LP + +P+P L+ KE
Sbjct: 11 DVVPSPGLPEKVNEKSKNIPLPEGINLLSSKE 42
>4dnh_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati YORK structural genomics research
consortium; 2.50A {Sinorhizobium meliloti}
Length = 396
Score = 25.8 bits (56), Expect = 5.1
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 66 RLQAYGWSLPAKLTSTP-PVHPLPPPSSSAQVPVPVPVYCRPLTEKEPGMKVSV 118
L G LT P P + + S V PL + +P + ++
Sbjct: 6 DLPIEGRLARYDLTGRPVPFNSRDAKAFSRVAFAAAHVVADPLADNDPWLAPAI 59
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.8
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 48 ERREQYRQVRAHVRKDDGRLQAYGW-SLPA 76
E++ ++K L+ Y S PA
Sbjct: 18 EKQA--------LKKLQASLKLYADDSAPA 39
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 25.6 bits (57), Expect = 5.9
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 91 SSSAQVPVPVPVYCRPLTEKEPGMKVSVPQE 121
+++ V + + E GMK +VP+E
Sbjct: 226 ATTVNRKVD---FLSEIEEGVSGMKFAVPEE 253
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 25.7 bits (57), Expect = 6.3
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 98 VPVPVYCRPLTEKEPGMKVSVPQE 121
V Y L G+++ + +E
Sbjct: 261 VEAGDYLSTLDSDVDGLRIGIVRE 284
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 25.0 bits (54), Expect = 6.7
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 75 PAKLTSTPPVHPLPPPSSSAQVPVPV-PVYCRP 106
T+T PV P P P P CRP
Sbjct: 126 KVNSTTTKPVLRTPSPVHPTGTSQPQRPEDCRP 158
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 25.4 bits (55), Expect = 6.7
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 74 LPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEP 112
L + + P + P+ PP S P + +K P
Sbjct: 23 LDKRQEAAPTLRPVAPPISGTGYQPRPPKQDKQAMKKGP 61
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB:
3chx_A
Length = 419
Score = 25.1 bits (54), Expect = 8.3
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 4/55 (7%)
Query: 68 QAYGWSLPAKLTSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEPG----MKVSV 118
+ ++P + P+ P+ + V K PG + V V
Sbjct: 252 STFPRTIPLQAGLQKPLTPIETEGTVGVGKEQVTTELNGGVYKVPGRELTINVKV 306
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 25.3 bits (54), Expect = 8.6
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 7/49 (14%)
Query: 85 HPLPPPSSSAQVPVPVPVYCRPL------TEKEPGMKVSVPQEMAIGDF 127
+ P + + P ++ L K PG+ +E I DF
Sbjct: 621 YVFKPKNPDMEKDCPTIIHF-VLANINFRKYKAPGVPRETEEEKEIADF 668
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7,
activated mutant, ATP-binding, structural genomics,
NPPSFA; 2.45A {Homo sapiens}
Length = 318
Score = 25.0 bits (55), Expect = 9.5
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 1 MEYIERTKLMMGSGSSDRMDSRPPRLPSMGLGHI 34
ME MG+ + +P LG +
Sbjct: 103 MEL-------MGTCAEKLKKRMQGPIPERILGKM 129
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 24.9 bits (55), Expect = 9.6
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 50 REQYRQVRAHVRKDDGRLQAYGWSL 74
R Q Q+ + + D L G L
Sbjct: 460 RAQAAQIAELLERPDADLAGVGLGL 484
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus}
SCOP: b.47.1.2
Length = 224
Score = 24.8 bits (55), Expect = 9.7
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 2/23 (8%)
Query: 75 PAKLTSTPPVHPLPPPSSSAQVP 97
+LT V+ +P PS S +
Sbjct: 98 KVELTPA--VNVVPLPSPSDFIH 118
>1wvt_A Hypothetical protein ST2180; structural genomics, unknown
function; 2.30A {Sulfolobus tokodaii}
Length = 172
Score = 24.4 bits (54), Expect = 10.0
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 60 VRKDDGRLQAYG 71
V KD ++A G
Sbjct: 20 VWKDSEIVKALG 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.399
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,986,047
Number of extensions: 103412
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 63
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.8 bits)