RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2154
         (128 letters)



>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant
           domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 23.5 bits (50), Expect = 7.2
 Identities = 9/39 (23%), Positives = 12/39 (30%)

Query: 79  TSTPPVHPLPPPSSSAQVPVPVPVYCRPLTEKEPGMKVS 117
            S P + PL    +S      V V C         +  S
Sbjct: 3   ASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFS 41


>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 24.0 bits (50), Expect = 7.6
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 85  HPLPPPSSSAQVPVPVPVYC 104
           H L P +  A    P+P + 
Sbjct: 1   HYLVPYNQRANHSKPIPPFL 20


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 484,535
Number of extensions: 20330
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 14
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.9 bits)