Query psy2157
Match_columns 71
No_of_seqs 91 out of 106
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 17:46:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3522|consensus 99.5 2.1E-14 4.7E-19 117.6 3.1 64 5-68 653-716 (925)
2 KOG3522|consensus 98.2 9.9E-07 2.1E-11 73.3 2.4 65 4-69 738-802 (925)
3 PF02239 Cytochrom_D1: Cytochr 91.7 0.24 5.1E-06 37.3 3.6 58 5-64 302-362 (369)
4 KOG2111|consensus 80.2 4 8.6E-05 31.6 4.6 38 20-57 181-220 (346)
5 cd00200 WD40 WD40 domain, foun 79.4 6.2 0.00013 24.8 4.7 38 21-58 220-258 (289)
6 PF00400 WD40: WD domain, G-be 77.1 6.9 0.00015 19.0 6.0 35 10-47 4-39 (39)
7 PF02239 Cytochrom_D1: Cytochr 76.4 13 0.00028 28.0 6.4 52 5-60 66-119 (369)
8 smart00472 MIR Domain in ryano 72.6 2.8 6.1E-05 22.8 1.6 23 37-59 4-26 (57)
9 TIGR03866 PQQ_ABC_repeats PQQ- 66.9 31 0.00067 22.8 5.9 40 21-60 249-290 (300)
10 KOG4499|consensus 65.9 14 0.00031 28.1 4.5 40 21-60 212-252 (310)
11 cd00200 WD40 WD40 domain, foun 65.1 31 0.00068 21.5 6.3 40 19-58 134-174 (289)
12 KOG2110|consensus 65.0 24 0.00053 27.8 5.8 49 6-57 162-212 (391)
13 TIGR02276 beta_rpt_yvtn 40-res 62.3 18 0.00039 17.8 3.9 31 30-60 3-33 (42)
14 PF02815 MIR: MIR domain; Int 57.7 7.7 0.00017 26.1 1.8 26 40-65 68-93 (190)
15 PF14784 ECIST_Cterm: C-termin 55.3 9 0.00019 25.6 1.7 30 3-32 68-97 (126)
16 PF15492 Nbas_N: Neuroblastoma 53.9 43 0.00093 25.3 5.3 51 9-62 32-83 (282)
17 KOG1273|consensus 53.3 20 0.00043 28.2 3.5 57 6-65 54-111 (405)
18 TIGR02658 TTQ_MADH_Hv methylam 53.1 47 0.001 25.3 5.5 56 4-59 84-146 (352)
19 KOG0299|consensus 52.7 26 0.00056 28.3 4.2 39 18-56 200-239 (479)
20 KOG2048|consensus 51.8 21 0.00046 30.0 3.6 40 11-50 373-412 (691)
21 KOG3359|consensus 48.6 11 0.00023 31.8 1.5 30 36-65 380-409 (723)
22 KOG0274|consensus 48.2 58 0.0012 26.2 5.5 47 7-57 321-367 (537)
23 PF11715 Nup160: Nucleoporin N 47.7 55 0.0012 25.3 5.2 32 29-60 228-259 (547)
24 PF05096 Glu_cyclase_2: Glutam 47.2 80 0.0017 23.5 5.8 60 4-64 156-218 (264)
25 PTZ00421 coronin; Provisional 47.1 91 0.002 24.6 6.4 46 10-58 161-207 (493)
26 TIGR03866 PQQ_ABC_repeats PQQ- 45.7 86 0.0019 20.6 5.5 49 6-58 20-70 (300)
27 KOG0271|consensus 45.0 22 0.00048 28.5 2.7 36 19-54 156-192 (480)
28 PF09965 DUF2199: Uncharacteri 44.8 8.1 0.00018 26.3 0.2 14 29-42 70-83 (148)
29 KOG0271|consensus 43.7 31 0.00067 27.8 3.3 36 21-56 248-283 (480)
30 COG1928 PMT1 Dolichyl-phosphat 42.4 15 0.00032 30.9 1.4 31 35-65 361-391 (699)
31 KOG0301|consensus 42.4 33 0.00071 29.1 3.4 46 8-57 170-215 (745)
32 KOG0276|consensus 41.0 18 0.00038 30.7 1.7 28 31-58 239-266 (794)
33 TIGR02658 TTQ_MADH_Hv methylam 41.0 94 0.002 23.7 5.5 54 5-61 35-97 (352)
34 COG3490 Uncharacterized protei 39.5 59 0.0013 25.4 4.2 51 19-69 224-280 (366)
35 PF00408 PGM_PMM_IV: Phosphogl 36.5 84 0.0018 17.9 3.7 20 27-46 30-52 (73)
36 KOG0283|consensus 35.8 25 0.00054 29.7 1.8 36 21-56 370-405 (712)
37 KOG1539|consensus 35.5 33 0.00071 29.8 2.4 52 5-59 564-616 (910)
38 smart00320 WD40 WD40 repeats. 35.4 40 0.00087 13.9 5.1 35 9-46 4-39 (40)
39 KOG3914|consensus 35.3 55 0.0012 25.9 3.5 46 22-67 196-241 (390)
40 COG1851 Uncharacterized conser 34.9 16 0.00036 26.6 0.5 31 40-70 198-228 (229)
41 KOG0266|consensus 34.8 1.4E+02 0.0031 22.8 5.6 46 5-53 276-322 (456)
42 PF01011 PQQ: PQQ enzyme repea 34.6 67 0.0014 16.2 3.6 30 33-63 3-32 (38)
43 PF12566 DUF3748: Protein of u 33.9 28 0.00061 23.4 1.5 41 3-44 51-92 (122)
44 KOG1446|consensus 33.7 1.2E+02 0.0026 23.4 5.0 44 17-60 11-55 (311)
45 KOG0316|consensus 33.7 42 0.00091 25.6 2.5 37 20-56 183-220 (307)
46 PLN00181 protein SPA1-RELATED; 32.4 2.1E+02 0.0045 23.3 6.4 48 9-59 567-616 (793)
47 KOG0649|consensus 32.4 1.2E+02 0.0025 23.4 4.7 51 4-57 143-194 (325)
48 KOG1188|consensus 31.1 72 0.0016 25.1 3.5 56 5-60 58-113 (376)
49 KOG2096|consensus 30.2 1.2E+02 0.0025 24.2 4.5 42 19-61 186-228 (420)
50 PF04053 Coatomer_WDAD: Coatom 30.1 76 0.0017 24.8 3.5 30 32-61 117-146 (443)
51 KOG0284|consensus 29.3 40 0.00086 27.1 1.9 52 17-68 135-197 (464)
52 PHA02751 hypothetical protein; 29.0 14 0.0003 26.8 -0.6 42 10-51 39-82 (233)
53 PF08168 NUC205: NUC205 domain 28.5 36 0.00078 19.1 1.1 25 7-32 2-26 (44)
54 KOG0284|consensus 28.2 29 0.00063 27.9 1.0 48 3-52 165-213 (464)
55 PTZ00420 coronin; Provisional 27.2 1.6E+02 0.0035 24.0 5.0 38 21-58 168-206 (568)
56 PRK13796 GTPase YqeH; Provisio 27.1 1.5E+02 0.0032 22.3 4.5 34 11-50 322-355 (365)
57 PRK11028 6-phosphogluconolacto 26.8 1.7E+02 0.0037 20.6 4.6 43 19-61 173-221 (330)
58 KOG2394|consensus 26.5 66 0.0014 26.9 2.7 35 20-54 290-325 (636)
59 KOG0290|consensus 26.4 2.2E+02 0.0048 22.3 5.4 43 9-54 188-232 (364)
60 KOG0266|consensus 26.2 1.1E+02 0.0024 23.3 3.8 51 10-60 369-420 (456)
61 PF10793 Gloverin: Gloverin-li 25.5 31 0.00068 24.0 0.6 24 11-35 100-123 (157)
62 PF15416 DUF4623: Domain of un 24.6 51 0.0011 26.3 1.7 31 30-60 193-230 (442)
63 PF13449 Phytase-like: Esteras 24.2 2.5E+02 0.0054 20.5 5.2 34 25-59 89-129 (326)
64 KOG1036|consensus 24.2 1.1E+02 0.0024 23.7 3.4 51 13-63 6-57 (323)
65 KOG0640|consensus 23.0 77 0.0017 25.1 2.4 47 11-58 208-255 (430)
66 KOG2055|consensus 22.5 75 0.0016 26.0 2.3 33 32-64 315-348 (514)
67 KOG0278|consensus 21.3 1.6E+02 0.0034 22.7 3.7 44 20-63 184-227 (334)
68 KOG4547|consensus 20.9 2.1E+02 0.0045 23.6 4.5 46 7-56 134-179 (541)
69 KOG0310|consensus 20.8 1.9E+02 0.0042 23.5 4.3 54 12-68 148-204 (487)
70 PTZ00421 coronin; Provisional 20.4 4.1E+02 0.0089 21.0 6.0 40 19-58 124-165 (493)
71 KOG0646|consensus 20.0 1.1E+02 0.0023 24.9 2.7 52 15-66 272-325 (476)
No 1
>KOG3522|consensus
Probab=99.47 E-value=2.1e-14 Score=117.55 Aligned_cols=64 Identities=27% Similarity=0.432 Sum_probs=60.5
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCccccceeeecchhhHhhhh
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLD 68 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIap~V~kmL~ 68 (71)
+++..++..++|++....|+||+.+|.|||+||.+|+++|+||++|++|+||+||+++|+.|+-
T Consensus 653 tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hlqd~niaT~vt~~lP 716 (925)
T KOG3522|consen 653 TTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHLQDSNIATSVTVDLP 716 (925)
T ss_pred hhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCccccccCcceeecCC
Confidence 5677888999999999999999999999999999999999999999999999999999998863
No 2
>KOG3522|consensus
Probab=98.17 E-value=9.9e-07 Score=73.27 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=62.0
Q ss_pred CcceeeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCccccceeeecchhhHhhhhc
Q psy2157 4 LDPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLDC 69 (71)
Q Consensus 4 ~~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIap~V~kmL~~ 69 (71)
..|+.++..|...+| .+.+.+|..+--+||+.++.+..+++||..|++.+.|++..|+|++||+.
T Consensus 738 ~~~l~v~~~v~~~q~-~k~~~~~~vS~~~~~~~vk~~~~~~~~H~~~~~~~~e~~~~~p~~~~~~~ 802 (925)
T KOG3522|consen 738 SLTLLVALPVPRLQD-SKVTGRMMVSYHAVWSPVKFSAHATALHEKTKDKSREVLAPPPVPQMLDQ 802 (925)
T ss_pred cceeEEEeeeeeccC-CceeeeeeeecccccccchhhhhhhhhccchHhhhhhccCCCCCchhhhc
Confidence 468899999999999 69999999999999999999999999999999999999999999999975
No 3
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=91.71 E-value=0.24 Score=37.27 Aligned_cols=58 Identities=22% Similarity=0.455 Sum_probs=38.4
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCe--EEEEEecCC-eEeEEecCccccceeeecchhhH
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDS-TLRMYNAHTYQHLQDVDIEPYVS 64 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~G--VWiS~~~~s-~lrLfHa~T~e~LqeVnIap~V~ 64 (71)
+++++.+++...+. ..+-||....+| ||+|+..+. .|..|.+.|+|.+.+|.+..|.-
T Consensus 302 ~tl~~~~~i~~~~~--~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~~~tP~G 362 (369)
T PF02239_consen 302 KTLKVVKTITPGPG--KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIPVPTPTG 362 (369)
T ss_dssp CGTEEEE-HHHHHT----EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE--SEEE
T ss_pred cCcceeEEEeccCC--CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEEeeCCCe
Confidence 45555555543333 458899877655 899999988 99999999999999999766543
No 4
>KOG2111|consensus
Probab=80.21 E-value=4 Score=31.61 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=32.7
Q ss_pred CCceeEEEEeCCeEEEEEe--cCCeEeEEecCccccceee
Q psy2157 20 ESQVRQMTWAGDGVWVSIR--LDSTLRMYNAHTYQHLQDV 57 (71)
Q Consensus 20 ~~~V~~Ma~~g~GVWiS~~--~~s~lrLfHa~T~e~LqeV 57 (71)
++.|.||+-.-.|-=+|-- .|.-||+|.|++.+.|||.
T Consensus 181 ~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~ 220 (346)
T KOG2111|consen 181 DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL 220 (346)
T ss_pred cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee
Confidence 4789999988888777765 5999999999999999985
No 5
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=79.38 E-value=6.2 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.393 Sum_probs=32.8
Q ss_pred CceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeee
Q psy2157 21 SQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 21 ~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVn 58 (71)
..|..+++..+|-++.... +..+++|...+.+.++.+.
T Consensus 220 ~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~ 258 (289)
T cd00200 220 NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258 (289)
T ss_pred CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc
Confidence 4899999999888888887 9999999999888777665
No 6
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=77.14 E-value=6.9 Score=19.00 Aligned_cols=35 Identities=26% Similarity=0.592 Sum_probs=25.2
Q ss_pred eEEEeeecCCCCceeEEEEeCC-eEEEEEecCCeEeEEe
Q psy2157 10 QKSFDAHPRRESQVRQMTWAGD-GVWVSIRLDSTLRMYN 47 (71)
Q Consensus 10 e~~f~v~~d~~~~V~~Ma~~g~-GVWiS~~~~s~lrLfH 47 (71)
.+.|+.|. ..|++|++.-. ..-++-..+.+||+|.
T Consensus 4 ~~~~~~h~---~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHS---SSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSS---SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCC---CcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44555554 57999998887 5555666789999984
No 7
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=76.38 E-value=13 Score=27.98 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=34.0
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEE--EEecCCeEeEEecCccccceeeecc
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWV--SIRLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWi--S~~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
.+.++.+.+.+. ...+.++.+.+|=++ +-.....+.++.++|+|.++.|...
T Consensus 66 ~~~~~v~~i~~G----~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 66 ATGKVVATIKVG----GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp TSSSEEEEEE-S----SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred CcccEEEEEecC----CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 455666666664 445788888887555 4556999999999999999999764
No 8
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=72.61 E-value=2.8 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.3
Q ss_pred EecCCeEeEEecCccccceeeec
Q psy2157 37 IRLDSTLRMYNAHTYQHLQDVDI 59 (71)
Q Consensus 37 ~~~~s~lrLfHa~T~e~LqeVnI 59 (71)
++.++.+||.|..|..-|.-=+.
T Consensus 4 v~~g~~vrL~H~~tg~yL~s~~~ 26 (57)
T smart00472 4 VRWGDVVRLRHVTTGRYLHSHEN 26 (57)
T ss_pred cccCCEEEEEEhhhCcEeecCCC
Confidence 45689999999999876654333
No 9
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=66.89 E-value=31 Score=22.77 Aligned_cols=40 Identities=8% Similarity=0.290 Sum_probs=32.1
Q ss_pred CceeEEEEeCCeEEEEE--ecCCeEeEEecCccccceeeecc
Q psy2157 21 SQVRQMTWAGDGVWVSI--RLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 21 ~~V~~Ma~~g~GVWiS~--~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
..+.+++++-+|=++.. ..+..|++|...+.+.++.+.+-
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 46888888777766655 45889999999999999988754
No 10
>KOG4499|consensus
Probab=65.91 E-value=14 Score=28.09 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.2
Q ss_pred CceeEEEEeCCe-EEEEEecCCeEeEEecCccccceeeecc
Q psy2157 21 SQVRQMTWAGDG-VWVSIRLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 21 ~~V~~Ma~~g~G-VWiS~~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
--..-|+.-++| +||+.-+++++-.+...|.+.|+||-+-
T Consensus 212 ~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP 252 (310)
T KOG4499|consen 212 LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP 252 (310)
T ss_pred CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC
Confidence 334456666655 8999999999999999999999999875
No 11
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=65.06 E-value=31 Score=21.52 Aligned_cols=40 Identities=18% Similarity=0.389 Sum_probs=33.2
Q ss_pred CCCceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeee
Q psy2157 19 RESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 19 ~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVn 58 (71)
....|+++++..++-.+.... +..+++|...+.+.++.+.
T Consensus 134 ~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 174 (289)
T cd00200 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT 174 (289)
T ss_pred CCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe
Confidence 345799999999888887777 9999999999888877765
No 12
>KOG2110|consensus
Probab=64.98 E-value=24 Score=27.80 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=40.3
Q ss_pred ceeeeEEEeeecCCCCceeEEEEeCCeEEEEEec--CCeEeEEecCccccceee
Q psy2157 6 PMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRL--DSTLRMYNAHTYQHLQDV 57 (71)
Q Consensus 6 tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~--~s~lrLfHa~T~e~LqeV 57 (71)
+++--..+++|. .++.+||-+-+|-=+|--. |..||.|+..+.+.|.|.
T Consensus 162 nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 162 NLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEF 212 (391)
T ss_pred cceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeee
Confidence 445555677765 5699999999999888764 999999999999999885
No 13
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=62.29 E-value=18 Score=17.83 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=26.8
Q ss_pred CCeEEEEEecCCeEeEEecCccccceeeecc
Q psy2157 30 GDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 30 g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
|.-+|++-+.+.+|-.+.+.|.+.+..|.+.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 4558888888999999999999999998874
No 14
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=57.74 E-value=7.7 Score=26.09 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=21.6
Q ss_pred CCeEeEEecCccccceeeecchhhHh
Q psy2157 40 DSTLRMYNAHTYQHLQDVDIEPYVSK 65 (71)
Q Consensus 40 ~s~lrLfHa~T~e~LqeVnIap~V~k 65 (71)
+..+||.|-.|.+-|---++++++++
T Consensus 68 g~~iRL~H~~Tg~yL~~~~~~~p~s~ 93 (190)
T PF02815_consen 68 GDVIRLRHLSTGKYLHSHDVKSPISE 93 (190)
T ss_dssp TSEEEEEETTTS-EEEEEEEEECCCT
T ss_pred CCEEEEEEccCCCEEEEccccccccc
Confidence 78999999999999998888876654
No 15
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=55.35 E-value=9 Score=25.55 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=24.4
Q ss_pred CCcceeeeEEEeeecCCCCceeEEEEeCCe
Q psy2157 3 WLDPMNFQKSFDAHPRRESQVRQMTWAGDG 32 (71)
Q Consensus 3 ~~~tl~ve~~f~v~~d~~~~V~~Ma~~g~G 32 (71)
|......+..|.+|.-.+..|..|+..|.+
T Consensus 68 ~~~~~~~~~~~~vheq~dGti~Amc~tg~~ 97 (126)
T PF14784_consen 68 IDRGNWDEKKFSVHEQEDGTIFAMCMTGTS 97 (126)
T ss_pred ccccccccCCcceeEeccceEEEEEeccCC
Confidence 334456667899999999999999999975
No 16
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=53.87 E-value=43 Score=25.33 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=41.0
Q ss_pred eeEEEeeecCCCCceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeeecchh
Q psy2157 9 FQKSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIEPY 62 (71)
Q Consensus 9 ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVnIap~ 62 (71)
+.++-+|..|+.-|=|.++|+-+|-=+++.. +.++|+|..+. ..|- +|.|.
T Consensus 32 i~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf--~I~p~ 83 (282)
T PF15492_consen 32 IIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELF--VIPPA 83 (282)
T ss_pred eeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeE--EcCcc
Confidence 4455689999999999999999999999997 78999998876 4444 44443
No 17
>KOG1273|consensus
Probab=53.25 E-value=20 Score=28.25 Aligned_cols=57 Identities=16% Similarity=0.352 Sum_probs=45.9
Q ss_pred ceeeeEEEeeecCCCCceeEEEEeCCeEEE-EEecCCeEeEEecCccccceeeecchhhHh
Q psy2157 6 PMNFQKSFDAHPRRESQVRQMTWAGDGVWV-SIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 65 (71)
Q Consensus 6 tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWi-S~~~~s~lrLfHa~T~e~LqeVnIap~V~k 65 (71)
|..+-+.|.+|-+ +|.+++|+.+|==+ +-+.+-.+.||.-....+|++|-+..+|-+
T Consensus 54 T~~iar~lsaH~~---pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~ 111 (405)
T KOG1273|consen 54 TFRIARMLSAHVR---PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWG 111 (405)
T ss_pred ccchhhhhhcccc---ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccce
Confidence 4555666777764 69999999999654 445699999999999999999999888754
No 18
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=53.07 E-value=47 Score=25.33 Aligned_cols=56 Identities=4% Similarity=-0.054 Sum_probs=46.7
Q ss_pred CcceeeeEEEeeecCCC----CceeEEEEeCCeEEEEEec---CCeEeEEecCccccceeeec
Q psy2157 4 LDPMNFQKSFDAHPRRE----SQVRQMTWAGDGVWVSIRL---DSTLRMYNAHTYQHLQDVDI 59 (71)
Q Consensus 4 ~~tl~ve~~f~v~~d~~----~~V~~Ma~~g~GVWiS~~~---~s~lrLfHa~T~e~LqeVnI 59 (71)
+.|+++.+.+.+.++++ .....++-+-+|=|+-+.+ ++.+-....++.+-+.+|++
T Consensus 84 ~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 84 PQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence 46778888888877744 3445889999999998877 78999999999999999997
No 19
>KOG0299|consensus
Probab=52.75 E-value=26 Score=28.33 Aligned_cols=39 Identities=13% Similarity=0.353 Sum_probs=35.3
Q ss_pred CCCCceeEEEEeCCeEEEEEec-CCeEeEEecCcccccee
Q psy2157 18 RRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQD 56 (71)
Q Consensus 18 d~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~Lqe 56 (71)
...+.|-++|.+.+|-|+++-. |..+.+|-+.|.||++.
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc
Confidence 4557899999999999999997 88888999999999987
No 20
>KOG2048|consensus
Probab=51.83 E-value=21 Score=30.03 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=34.0
Q ss_pred EEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCc
Q psy2157 11 KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 50 (71)
Q Consensus 11 ~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T 50 (71)
+-+....-....|+|-|.+-+|=||++++-+..++||-.-
T Consensus 373 ~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~ 412 (691)
T KOG2048|consen 373 HLLKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQP 412 (691)
T ss_pred hheeeecCCccceeeeccCCCCCEEEEeeccceEEEEecc
Confidence 3455566667899999999999999999999999999654
No 21
>KOG3359|consensus
Probab=48.64 E-value=11 Score=31.81 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred EEecCCeEeEEecCccccceeeecchhhHh
Q psy2157 36 SIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 65 (71)
Q Consensus 36 S~~~~s~lrLfHa~T~e~LqeVnIap~V~k 65 (71)
-++.|..+||-|..|.+.|--=|++|++++
T Consensus 380 ~v~~G~~vrL~H~~T~r~LhsHdv~apvs~ 409 (723)
T KOG3359|consen 380 PVRHGDIVRLRHKMTGRNLHSHDVAAPVSP 409 (723)
T ss_pred eccCCcEEEEEecccCcccccCCCCCCCCC
Confidence 456789999999999999999999999986
No 22
>KOG0274|consensus
Probab=48.20 E-value=58 Score=26.18 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=36.8
Q ss_pred eeeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCccccceee
Q psy2157 7 MNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 57 (71)
Q Consensus 7 l~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeV 57 (71)
....+.+.+ ...+|++|... .+.=+|-+-+.+++.|++.|+++|-.+
T Consensus 321 ~~~l~l~~~---h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 321 GACLNLLRG---HTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred cceEEEecc---ccccEEEEEec-CCEEEEEecCceEEEEEhhhceeeeee
Confidence 334455665 44689999988 677788888889999999999998765
No 23
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=47.73 E-value=55 Score=25.29 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=29.0
Q ss_pred eCCeEEEEEecCCeEeEEecCccccceeeecc
Q psy2157 29 AGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 29 ~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
.+.++=+++..+.+||+|...|.+++...|+-
T Consensus 228 ~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 228 NDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 37888789999999999999999999999886
No 24
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=47.19 E-value=80 Score=23.47 Aligned_cols=60 Identities=5% Similarity=0.130 Sum_probs=45.9
Q ss_pred CcceeeeEEEeeecCCCCcee---EEEEeCCeEEEEEecCCeEeEEecCccccceeeecchhhH
Q psy2157 4 LDPMNFQKSFDAHPRRESQVR---QMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVS 64 (71)
Q Consensus 4 ~~tl~ve~~f~v~~d~~~~V~---~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIap~V~ 64 (71)
|++.++.+..+|.. .+++|+ -|.+.+.-||.-+=.+..|---..+|.+-...+|+++-..
T Consensus 156 P~~f~~~~~i~V~~-~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~ 218 (264)
T PF05096_consen 156 PETFKEVRTIQVTD-NGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRP 218 (264)
T ss_dssp TTT-SEEEEEE-EE-TTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHH
T ss_pred CcccceEEEEEEEE-CCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhh
Confidence 67888899999974 445555 4889999999999999999999999999999999877544
No 25
>PTZ00421 coronin; Provisional
Probab=47.12 E-value=91 Score=24.58 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=34.0
Q ss_pred eEEEeeecCCCCceeEEEEeCCeEEEEE-ecCCeEeEEecCccccceeee
Q psy2157 10 QKSFDAHPRRESQVRQMTWAGDGVWVSI-RLDSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 10 e~~f~v~~d~~~~V~~Ma~~g~GVWiS~-~~~s~lrLfHa~T~e~LqeVn 58 (71)
...|+.|. ..|..+++.-+|-.++. ..+.+||+|...+.+.+..+.
T Consensus 161 ~~~l~~h~---~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~ 207 (493)
T PTZ00421 161 VEVIKCHS---DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE 207 (493)
T ss_pred EEEEcCCC---CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe
Confidence 33454444 46999999888866654 458999999999988877664
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=45.67 E-value=86 Score=20.61 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=32.6
Q ss_pred ceeeeEEEeeecCCCCceeEEEEeCCe--EEEEEecCCeEeEEecCccccceeee
Q psy2157 6 PMNFQKSFDAHPRRESQVRQMTWAGDG--VWVSIRLDSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 6 tl~ve~~f~v~~d~~~~V~~Ma~~g~G--VWiS~~~~s~lrLfHa~T~e~LqeVn 58 (71)
+.+..+.|+.+ ..++.++++-+| ++++-..+..+++|...+.+.+..+.
T Consensus 20 t~~~~~~~~~~----~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~ 70 (300)
T TIGR03866 20 TLEVTRTFPVG----QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP 70 (300)
T ss_pred CCceEEEEECC----CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc
Confidence 44455556532 235667877665 45565668899999999988776654
No 27
>KOG0271|consensus
Probab=44.96 E-value=22 Score=28.55 Aligned_cols=36 Identities=22% Similarity=0.459 Sum_probs=30.7
Q ss_pred CCCceeEEEEeCCeEEEEEe-cCCeEeEEecCccccc
Q psy2157 19 RESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHL 54 (71)
Q Consensus 19 ~~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~L 54 (71)
...=|.|++|+-+|-||+-- .+.+||||.+.|.+++
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc
Confidence 34568999999999999865 4999999999998865
No 28
>PF09965 DUF2199: Uncharacterized protein conserved in bacteria (DUF2199); InterPro: IPR018697 This domain has no known function.
Probab=44.78 E-value=8.1 Score=26.29 Aligned_cols=14 Identities=43% Similarity=0.484 Sum_probs=10.4
Q ss_pred eCCeEEEEEecCCe
Q psy2157 29 AGDGVWVSIRLDST 42 (71)
Q Consensus 29 ~g~GVWiS~~~~s~ 42 (71)
..-|||+|++..+-
T Consensus 70 f~wGvWVslSe~~F 83 (148)
T PF09965_consen 70 FIWGVWVSLSEESF 83 (148)
T ss_pred EEEeeEEEecHHHH
Confidence 34699999997543
No 29
>KOG0271|consensus
Probab=43.73 E-value=31 Score=27.76 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=31.5
Q ss_pred CceeEEEEeCCeEEEEEecCCeEeEEecCcccccee
Q psy2157 21 SQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQD 56 (71)
Q Consensus 21 ~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~Lqe 56 (71)
.+|+|+.|.|+|.=-|=+.+.+||.|-+.....+.+
T Consensus 248 ~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~ 283 (480)
T KOG0271|consen 248 ASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRE 283 (480)
T ss_pred cceEEEEEcCCceEEecCCCceEEEEEccchhHHHh
Confidence 689999999999999999999999999988665544
No 30
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.44 E-value=15 Score=30.93 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=27.2
Q ss_pred EEEecCCeEeEEecCccccceeeecchhhHh
Q psy2157 35 VSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 65 (71)
Q Consensus 35 iS~~~~s~lrLfHa~T~e~LqeVnIap~V~k 65 (71)
+-+..|..+||.|..|.+.|.-=+..|++++
T Consensus 361 ~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~ 391 (699)
T COG1928 361 EPLKDGQSVRLRHKYTGKNLHFHDVKPPVSG 391 (699)
T ss_pred eeccCCcEEEEEEeeccceeecCCCCCCCCC
Confidence 3466789999999999999999999998876
No 31
>KOG0301|consensus
Probab=42.43 E-value=33 Score=29.14 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=38.1
Q ss_pred eeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCccccceee
Q psy2157 8 NFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDV 57 (71)
Q Consensus 8 ~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeV 57 (71)
+..++|.-|.| .||.++..-++=-+|+.|+..||+|.- +.|.|-+-
T Consensus 170 ~~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 170 TLLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred chhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cCceeeee
Confidence 44567888777 599999999989999999999999987 77776654
No 32
>KOG0276|consensus
Probab=41.05 E-value=18 Score=30.70 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=21.8
Q ss_pred CeEEEEEecCCeEeEEecCccccceeee
Q psy2157 31 DGVWVSIRLDSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 31 ~GVWiS~~~~s~lrLfHa~T~e~LqeVn 58 (71)
.-+=|+-+.++++|+||+.||+.--.+|
T Consensus 239 lpiiisgsEDGTvriWhs~Ty~lE~tLn 266 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTYKLEKTLN 266 (794)
T ss_pred CcEEEEecCCccEEEecCcceehhhhhh
Confidence 3445777889999999999998755554
No 33
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=40.95 E-value=94 Score=23.73 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=44.0
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEEEEe---------cCCeEeEEecCccccceeeecch
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIR---------LDSTLRMYNAHTYQHLQDVDIEP 61 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~---------~~s~lrLfHa~T~e~LqeVnIap 61 (71)
+++++...+.+..++.. + +.--|.-+.++-. .+..|.+|.+.|++...||.+-+
T Consensus 35 ~~~~v~g~i~~G~~P~~-~--~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 35 EAGRVLGMTDGGFLPNP-V--VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred CCCEEEEEEEccCCCce-e--ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCC
Confidence 57788888998887743 2 5556667888888 88999999999999999999854
No 34
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.49 E-value=59 Score=25.41 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCCceeEEEEeCCe-EEEEEe-----cCCeEeEEecCccccceeeecchhhHhhhhc
Q psy2157 19 RESQVRQMTWAGDG-VWVSIR-----LDSTLRMYNAHTYQHLQDVDIEPYVSKMLDC 69 (71)
Q Consensus 19 ~~~~V~~Ma~~g~G-VWiS~~-----~~s~lrLfHa~T~e~LqeVnIap~V~kmL~~ 69 (71)
..-+|+||+.-++| ||...| ++-..-+=|..-.|+|+-+++.+.+..-+++
T Consensus 224 ~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~an 280 (366)
T COG3490 224 RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFAN 280 (366)
T ss_pred hhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHh
Confidence 34689999999977 999998 5667788899999999999999887665544
No 35
>PF00408 PGM_PMM_IV: Phosphoglucomutase/phosphomannomutase, C-terminal domain; InterPro: IPR005843 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents the C-terminal domain alpha-D-phosphohexomutase enzymes.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1KFQ_B 1KFI_A 3PDK_B 2F7L_A 1TUO_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=36.46 E-value=84 Score=17.93 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.0
Q ss_pred EEeCCeEEEEEec---CCeEeEE
Q psy2157 27 TWAGDGVWVSIRL---DSTLRMY 46 (71)
Q Consensus 27 a~~g~GVWiS~~~---~s~lrLf 46 (71)
....+|.|+.+|. .+.||+|
T Consensus 30 ~~~~dG~~l~vR~SgTEP~iRv~ 52 (73)
T PF00408_consen 30 ILFEDGWRLLVRPSGTEPKIRVY 52 (73)
T ss_dssp EEETTEEEEEEEEESSSSEEEEE
T ss_pred EECCCceEEEEECCCCCceEEEE
Confidence 3567999999985 4557776
No 36
>KOG0283|consensus
Probab=35.76 E-value=25 Score=29.71 Aligned_cols=36 Identities=17% Similarity=0.470 Sum_probs=31.6
Q ss_pred CceeEEEEeCCeEEEEEecCCeEeEEecCcccccee
Q psy2157 21 SQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQD 56 (71)
Q Consensus 21 ~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~Lqe 56 (71)
.-|=-+.|+..+-=+|=+-|-|+||||..+-++|.-
T Consensus 370 ~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~ 405 (712)
T KOG0283|consen 370 ADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKV 405 (712)
T ss_pred hhheecccccCCeeEeccccccEEeecCCCcceeeE
Confidence 346678899999999999999999999999998864
No 37
>KOG1539|consensus
Probab=35.52 E-value=33 Score=29.77 Aligned_cols=52 Identities=23% Similarity=0.421 Sum_probs=39.9
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEEEEe-cCCeEeEEecCccccceeeec
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDVDI 59 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~LqeVnI 59 (71)
.|++|-+.|.=|.+ .|+.|.-+-+|=|+..- .|++||+|.--|...+--+-+
T Consensus 564 ~t~kvvR~f~gh~n---ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 564 VTRKVVREFWGHGN---RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred hhhhhhHHhhcccc---ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec
Confidence 35566666776665 59999999999998665 599999999988876654443
No 38
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=35.40 E-value=40 Score=13.88 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=22.5
Q ss_pred eeEEEeeecCCCCceeEEEEeCC-eEEEEEecCCeEeEE
Q psy2157 9 FQKSFDAHPRRESQVRQMTWAGD-GVWVSIRLDSTLRMY 46 (71)
Q Consensus 9 ve~~f~v~~d~~~~V~~Ma~~g~-GVWiS~~~~s~lrLf 46 (71)
....|..+. ..|.++.+... ...++-..++.+++|
T Consensus 4 ~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 4 LLKTLKGHT---GPVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred EEEEEEecC---CceeEEEECCCCCEEEEecCCCeEEEc
Confidence 445565443 46889888754 444555567888876
No 39
>KOG3914|consensus
Probab=35.29 E-value=55 Score=25.86 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=35.6
Q ss_pred ceeEEEEeCCeEEEEEecCCeEeEEecCccccceeeecchhhHhhh
Q psy2157 22 QVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKML 67 (71)
Q Consensus 22 ~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIap~V~kmL 67 (71)
=|+.|+..-+..=+|=..|.+||+|.-.+++.|-..|.+.-+...+
T Consensus 196 FVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~ 241 (390)
T KOG3914|consen 196 FVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLSSLVIPIL 241 (390)
T ss_pred heeeeeeccCceeeecCCCCcEEEEecccCCcccccchhHhhhhcc
Confidence 3666777666666777789999999999999998888776555443
No 40
>COG1851 Uncharacterized conserved protein [Function unknown]
Probab=34.92 E-value=16 Score=26.59 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=24.3
Q ss_pred CCeEeEEecCccccceeeecchhhHhhhhcc
Q psy2157 40 DSTLRMYNAHTYQHLQDVDIEPYVSKMLDCL 70 (71)
Q Consensus 40 ~s~lrLfHa~T~e~LqeVnIap~V~kmL~~~ 70 (71)
...-|++-.---=+|.|||||..|.+.||-+
T Consensus 198 ~nryR~sWlLPTiaLFDiDIa~kvd~~Lg~l 228 (229)
T COG1851 198 HNRYRLSWLLPTIALFDIDIANKVDKALGML 228 (229)
T ss_pred CCceEEEEecchhhheehhHHHHHHHHHhcc
Confidence 3446676666667899999999999999853
No 41
>KOG0266|consensus
Probab=34.79 E-value=1.4e+02 Score=22.80 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=34.8
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEEEEe-cCCeEeEEecCcccc
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQH 53 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~ 53 (71)
++.+..+.++.|.+ +|+.++-.++|=.+.-. .+..+|+|...+.+.
T Consensus 276 ~~~~~~~~l~~hs~---~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 276 RTGECVRKLKGHSD---GISGLAFSPDGNLLVSASYDGTIRVWDLETGSK 322 (456)
T ss_pred cCCeEEEeeeccCC---ceEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence 34455667777776 68888888877665544 499999999999993
No 42
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.63 E-value=67 Score=16.15 Aligned_cols=30 Identities=30% Similarity=0.290 Sum_probs=24.5
Q ss_pred EEEEEecCCeEeEEecCccccceeeecchhh
Q psy2157 33 VWVSIRLDSTLRMYNAHTYQHLQDVDIEPYV 63 (71)
Q Consensus 33 VWiS~~~~s~lrLfHa~T~e~LqeVnIap~V 63 (71)
|.+. ..+..|.-+.+.|.+.+++.+..+.+
T Consensus 3 v~~~-~~~g~l~AlD~~TG~~~W~~~~~~~~ 32 (38)
T PF01011_consen 3 VYVG-TPDGYLYALDAKTGKVLWKFQTGPPV 32 (38)
T ss_dssp EEEE-TTTSEEEEEETTTTSEEEEEESSSGG
T ss_pred EEEe-CCCCEEEEEECCCCCEEEeeeCCCCC
Confidence 3444 66889999999999999999987754
No 43
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=33.88 E-value=28 Score=23.37 Aligned_cols=41 Identities=22% Similarity=0.437 Sum_probs=26.4
Q ss_pred CCcceeeeEEEeeecCCCCceeEEEEeCCeEEEEEe-cCCeEe
Q psy2157 3 WLDPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLR 44 (71)
Q Consensus 3 ~~~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~-~~s~lr 44 (71)
+++.+.|.-.|....=.+..=.| +++++|-|+||. |+..++
T Consensus 51 ~lDA~dit~Pyt~GALRGGtHvH-vfSpDG~~lSFTYNDhVmh 92 (122)
T PF12566_consen 51 NLDAMDITPPYTPGALRGGTHVH-VFSPDGSWLSFTYNDHVMH 92 (122)
T ss_pred ecchhcccCCCCCccccCCccce-EECCCCCEEEEEecchhhc
Confidence 34555566666666554444333 588999999998 566554
No 44
>KOG1446|consensus
Probab=33.70 E-value=1.2e+02 Score=23.36 Aligned_cols=44 Identities=14% Similarity=0.443 Sum_probs=36.8
Q ss_pred cCCCCceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeeecc
Q psy2157 17 PRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 17 ~d~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVnIa 60 (71)
++....|..|.-+-+|--+.... +-+|+||.+.+...+.-|+-.
T Consensus 11 ~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~sk 55 (311)
T KOG1446|consen 11 RETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSK 55 (311)
T ss_pred ccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecc
Confidence 45678899999999999888855 559999999999998877643
No 45
>KOG0316|consensus
Probab=33.68 E-value=42 Score=25.58 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.5
Q ss_pred CCceeEEEEeCCeEEEEEe-cCCeEeEEecCcccccee
Q psy2157 20 ESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQD 56 (71)
Q Consensus 20 ~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~Lqe 56 (71)
+.+|++..-+.+|--.=.. .+|+|||-.-+|.|.|+.
T Consensus 183 g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~s 220 (307)
T KOG0316|consen 183 GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKS 220 (307)
T ss_pred CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHH
Confidence 5789999988888655444 599999999999999875
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=32.39 E-value=2.1e+02 Score=23.34 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=34.9
Q ss_pred eeEEEeeecCCCCceeEEEEe-CC-eEEEEEecCCeEeEEecCccccceeeec
Q psy2157 9 FQKSFDAHPRRESQVRQMTWA-GD-GVWVSIRLDSTLRMYNAHTYQHLQDVDI 59 (71)
Q Consensus 9 ve~~f~v~~d~~~~V~~Ma~~-g~-GVWiS~~~~s~lrLfHa~T~e~LqeVnI 59 (71)
....|+.| ...|.++++. .+ .+-++-..+.++|+|...+.+.+..+..
T Consensus 567 ~~~~~~~H---~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 567 LVTEMKEH---EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred EEEEecCC---CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 33444443 4579999986 34 4677888899999999998888776653
No 47
>KOG0649|consensus
Probab=32.38 E-value=1.2e+02 Score=23.39 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=0.0
Q ss_pred CcceeeeEEEeeecCCCCceeEEEE-eCCeEEEEEecCCeEeEEecCccccceee
Q psy2157 4 LDPMNFQKSFDAHPRRESQVRQMTW-AGDGVWVSIRLDSTLRMYNAHTYQHLQDV 57 (71)
Q Consensus 4 ~~tl~ve~~f~v~~d~~~~V~~Ma~-~g~GVWiS~~~~s~lrLfHa~T~e~LqeV 57 (71)
+++.+|+..|.=|.|= |-+++- ...|==+|=..+.++|+|.+.|-+|.+-|
T Consensus 143 lE~G~i~r~~rGHtDY---vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i 194 (325)
T KOG0649|consen 143 LEDGRIQREYRGHTDY---VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI 194 (325)
T ss_pred ecCCEEEEEEcCCcce---eeeeeecccCcceeecCCCccEEEEeccccceeEEe
No 48
>KOG1188|consensus
Probab=31.06 E-value=72 Score=25.11 Aligned_cols=56 Identities=14% Similarity=0.224 Sum_probs=42.8
Q ss_pred cceeeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCccccceeeecc
Q psy2157 5 DPMNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 5 ~tl~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIa 60 (71)
.|.+.-..|..++..-..|+..-..+.-+=+|...+.++|||.+.+...-.-++..
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~ 113 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT 113 (376)
T ss_pred cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc
Confidence 34666678999999988888877745555578899999999999888766555543
No 49
>KOG2096|consensus
Probab=30.21 E-value=1.2e+02 Score=24.15 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=32.7
Q ss_pred CCCceeEEEEeCCeEEE-EEecCCeEeEEecCccccceeeecch
Q psy2157 19 RESQVRQMTWAGDGVWV-SIRLDSTLRMYNAHTYQHLQDVDIEP 61 (71)
Q Consensus 19 ~~~~V~~Ma~~g~GVWi-S~~~~s~lrLfHa~T~e~LqeVnIap 61 (71)
....|-..-.+|.|+.| |.+.+..|+|||-. .+.||-||-..
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 33455556677777664 67789999999998 99999999654
No 50
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=30.06 E-value=76 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=24.5
Q ss_pred eEEEEEecCCeEeEEecCccccceeeecch
Q psy2157 32 GVWVSIRLDSTLRMYNAHTYQHLQDVDIEP 61 (71)
Q Consensus 32 GVWiS~~~~s~lrLfHa~T~e~LqeVnIap 61 (71)
|-.+.++.+..|.+|..+|.+.+.+||+.+
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--EEEEESS-E
T ss_pred CcEEEEECCCCEEEEEhhHcceeeEEecCC
Confidence 889999998899999999999999999987
No 51
>KOG0284|consensus
Probab=29.33 E-value=40 Score=27.15 Aligned_cols=52 Identities=25% Similarity=0.556 Sum_probs=38.0
Q ss_pred cCCCCceeEEEEeCCeEEE-EEecCCeEeEEecC----------ccccceeeecchhhHhhhh
Q psy2157 17 PRRESQVRQMTWAGDGVWV-SIRLDSTLRMYNAH----------TYQHLQDVDIEPYVSKMLD 68 (71)
Q Consensus 17 ~d~~~~V~~Ma~~g~GVWi-S~~~~s~lrLfHa~----------T~e~LqeVnIap~V~kmL~ 68 (71)
+..+++|+.|.|+-+|-|+ |=..+..|+.|+.. .-|.+.|+-++|.=+|.++
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t 197 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLT 197 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEE
Confidence 4456899999999999996 44468899988743 3456667777776666554
No 52
>PHA02751 hypothetical protein; Provisional
Probab=29.02 E-value=14 Score=26.84 Aligned_cols=42 Identities=26% Similarity=0.587 Sum_probs=32.6
Q ss_pred eEEEeeecCCCCceeEEEEeC-CeEEE-EEecCCeEeEEecCcc
Q psy2157 10 QKSFDAHPRRESQVRQMTWAG-DGVWV-SIRLDSTLRMYNAHTY 51 (71)
Q Consensus 10 e~~f~v~~d~~~~V~~Ma~~g-~GVWi-S~~~~s~lrLfHa~T~ 51 (71)
+++....||.-++|-..+..| +|+.. ++-.--+|||||+.-+
T Consensus 39 qKClPiTPdrfaeiMk~akPg~~~lYaeAlilPDTiRlf~adL~ 82 (233)
T PHA02751 39 QKCLPITPDRFAEIMKVAKPGADGLYAEALILPDTIRLFHADLF 82 (233)
T ss_pred CceecCCCchHHHHHHhhccCCCceEEEEEeccchhhheeeeeE
Confidence 466778888888888888888 56664 5667889999998643
No 53
>PF08168 NUC205: NUC205 domain; InterPro: IPR012584 This domain is found in a novel family of nucleolar proteins [].; GO: 0005634 nucleus
Probab=28.49 E-value=36 Score=19.13 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=20.2
Q ss_pred eeeeEEEeeecCCCCceeEEEEeCCe
Q psy2157 7 MNFQKSFDAHPRRESQVRQMTWAGDG 32 (71)
Q Consensus 7 l~ve~~f~v~~d~~~~V~~Ma~~g~G 32 (71)
+.++++|.+.-+. ..|..|.-+.+|
T Consensus 2 ~~~~~Sfta~V~~-k~isL~~L~SDG 26 (44)
T PF08168_consen 2 KSVIKSFTASVDR-KFISLMSLSSDG 26 (44)
T ss_pred cchhhhhheeeec-ceEEEEEeccCC
Confidence 3567888888887 889999877777
No 54
>KOG0284|consensus
Probab=28.17 E-value=29 Score=27.90 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=37.1
Q ss_pred CCcceeeeEEEeeecCCCCceeEEEEe-CCeEEEEEecCCeEeEEecCccc
Q psy2157 3 WLDPMNFQKSFDAHPRRESQVRQMTWA-GDGVWVSIRLDSTLRMYNAHTYQ 52 (71)
Q Consensus 3 ~~~tl~ve~~f~v~~d~~~~V~~Ma~~-g~GVWiS~~~~s~lrLfHa~T~e 52 (71)
|--.++..+.|++|+. .+|++||-+ .+-+.++.+.+++||+|...-++
T Consensus 165 WqpnmnnVk~~~ahh~--eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k 213 (464)
T KOG0284|consen 165 WQPNMNNVKIIQAHHA--EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK 213 (464)
T ss_pred cccchhhhHHhhHhhh--hhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence 4445566677788776 489999955 78899999999999999865443
No 55
>PTZ00420 coronin; Provisional
Probab=27.21 E-value=1.6e+02 Score=23.95 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=32.0
Q ss_pred CceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeee
Q psy2157 21 SQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 21 ~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVn 58 (71)
..|.++++.-+|-.++... +.++|+|...+.+.++.+.
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH 206 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe
Confidence 5799999998888887664 8899999999998887654
No 56
>PRK13796 GTPase YqeH; Provisional
Probab=27.09 E-value=1.5e+02 Score=22.28 Aligned_cols=34 Identities=12% Similarity=0.437 Sum_probs=25.0
Q ss_pred EEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCc
Q psy2157 11 KSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHT 50 (71)
Q Consensus 11 ~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T 50 (71)
+.|.+.. -.-++.+|.| |+++..+..+++|-.+.
T Consensus 322 ~~~~~~~-----~~Divi~glG-wi~v~~~~~~~~~~p~g 355 (365)
T PRK13796 322 HEFTIKE-----KTDIVFSGLG-WITVPGGAKVAAWAPKG 355 (365)
T ss_pred EEEEECC-----cccEEEcCCc-eEEECCCeEEEEEecCC
Confidence 4566621 2678899999 99999877788876543
No 57
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=26.78 E-value=1.7e+02 Score=20.57 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCceeEEEEeCCeEEE--EEecCCeEeEEecC----ccccceeeecch
Q psy2157 19 RESQVRQMTWAGDGVWV--SIRLDSTLRMYNAH----TYQHLQDVDIEP 61 (71)
Q Consensus 19 ~~~~V~~Ma~~g~GVWi--S~~~~s~lrLfHa~----T~e~LqeVnIap 61 (71)
.+..+++|+...+|=.+ +-..+.++++|... +++..|+++..|
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p 221 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMP 221 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCC
Confidence 45667899988886555 44458999999975 567777776543
No 58
>KOG2394|consensus
Probab=26.45 E-value=66 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=29.3
Q ss_pred CCceeEEEEeCCeEEEEEec-CCeEeEEecCccccc
Q psy2157 20 ESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHL 54 (71)
Q Consensus 20 ~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~L 54 (71)
+..|...+-+++|-.+|+.. +..||+||-.|-|.|
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH
Confidence 34777888889999999876 999999999887665
No 59
>KOG0290|consensus
Probab=26.44 E-value=2.2e+02 Score=22.30 Aligned_cols=43 Identities=21% Similarity=0.448 Sum_probs=32.5
Q ss_pred eeEEEeeecCCCCceeEEEEeC--CeEEEEEecCCeEeEEecCccccc
Q psy2157 9 FQKSFDAHPRRESQVRQMTWAG--DGVWVSIRLDSTLRMYNAHTYQHL 54 (71)
Q Consensus 9 ve~~f~v~~d~~~~V~~Ma~~g--~GVWiS~~~~s~lrLfHa~T~e~L 54 (71)
|+.++-+|. +.|.-++.++ .+|..|+.-+..+|+|.-...||=
T Consensus 188 vkTQLIAHD---KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 188 VKTQLIAHD---KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred eeeEEEecC---cceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 444555554 4588888777 789999999999999987776664
No 60
>KOG0266|consensus
Probab=26.20 E-value=1.1e+02 Score=23.33 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=39.0
Q ss_pred eEEEeeecCCCCceeEEEEeCCeEEEEEe-cCCeEeEEecCccccceeeecc
Q psy2157 10 QKSFDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDVDIE 60 (71)
Q Consensus 10 e~~f~v~~d~~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~LqeVnIa 60 (71)
-..+.-|......+..+.....|.|+..- .+..+++|+..+.+.+|.++-.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 369 VGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred eeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 34555555544566667778899998765 5999999999999999988765
No 61
>PF10793 Gloverin: Gloverin-like protein ; InterPro: IPR019729 This entry represents proteins that are Gloverin-like. Gloverin is a 13.8kDa inducible antibacterial insect protein which inhibits the synthesis of vital outer membrane proteins leading to a permeable outer membrane. Gloverin contains a large number of glycine residues [].
Probab=25.50 E-value=31 Score=23.96 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=16.0
Q ss_pred EEEeeecCCCCceeEEEEeCCeEEE
Q psy2157 11 KSFDAHPRRESQVRQMTWAGDGVWV 35 (71)
Q Consensus 11 ~~f~v~~d~~~~V~~Ma~~g~GVWi 35 (71)
..+.|+..-+ -.+.|..+|+|||=
T Consensus 100 AalDv~kqIg-g~sg~~asg~GvW~ 123 (157)
T PF10793_consen 100 AALDVSKQIG-GRSGMTASGDGVWP 123 (157)
T ss_pred hhcchhhhhC-CCccceeccceeec
Confidence 3455555442 34678999999994
No 62
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=24.61 E-value=51 Score=26.26 Aligned_cols=31 Identities=16% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCeEEEEE-ec--CCeEeEEecCcc----ccceeeecc
Q psy2157 30 GDGVWVSI-RL--DSTLRMYNAHTY----QHLQDVDIE 60 (71)
Q Consensus 30 g~GVWiS~-~~--~s~lrLfHa~T~----e~LqeVnIa 60 (71)
+.-+.+|- +. -|.|++||++|. |-+.+||+.
T Consensus 193 nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~ 230 (442)
T PF15416_consen 193 NGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVG 230 (442)
T ss_pred CCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeec
Confidence 33455543 32 589999999985 566677764
No 63
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=24.24 E-value=2.5e+02 Score=20.46 Aligned_cols=34 Identities=9% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEEE-eCCeEEEEEecC------CeEeEEecCccccceeeec
Q psy2157 25 QMTW-AGDGVWVSIRLD------STLRMYNAHTYQHLQDVDI 59 (71)
Q Consensus 25 ~Ma~-~g~GVWiS~~~~------s~lrLfHa~T~e~LqeVnI 59 (71)
-|+. .+.++|||.-.+ ..|+-|... .+.+.++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~v 129 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPV 129 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEcc
Confidence 4555 889999999999 999999987 777888766
No 64
>KOG1036|consensus
Probab=24.22 E-value=1.1e+02 Score=23.67 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=34.3
Q ss_pred EeeecCCCCceeEEEEeCCeEEEEEe-cCCeEeEEecCccccceeeecchhh
Q psy2157 13 FDAHPRRESQVRQMTWAGDGVWVSIR-LDSTLRMYNAHTYQHLQDVDIEPYV 63 (71)
Q Consensus 13 f~v~~d~~~~V~~Ma~~g~GVWiS~~-~~s~lrLfHa~T~e~LqeVnIap~V 63 (71)
|+..+-++-.|+.|.-+-.+--+-.. =+++||||-..+.+.+++++-..|+
T Consensus 6 ~~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~pl 57 (323)
T KOG1036|consen 6 FELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPL 57 (323)
T ss_pred cccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCce
Confidence 55555556667777655333233333 4999999999999998888765544
No 65
>KOG0640|consensus
Probab=22.95 E-value=77 Score=25.09 Aligned_cols=47 Identities=23% Similarity=0.529 Sum_probs=35.2
Q ss_pred EEEeeecCCCCceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeee
Q psy2157 11 KSFDAHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 11 ~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVn 58 (71)
+-|.+.+|. -+|+++..--.|=.+.+-+ -.++|||..+|+|+.---|
T Consensus 208 rA~K~~qd~-~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 208 RAFKVFQDT-EPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred HHHHHhhcc-ceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 446667776 5788888666666666665 7899999999999876554
No 66
>KOG2055|consensus
Probab=22.55 E-value=75 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=25.8
Q ss_pred eEEEEEec-CCeEeEEecCccccceeeecchhhH
Q psy2157 32 GVWVSIRL-DSTLRMYNAHTYQHLQDVDIEPYVS 64 (71)
Q Consensus 32 GVWiS~~~-~s~lrLfHa~T~e~LqeVnIap~V~ 64 (71)
|--|++.. .+.|.|-|+.|.|++--+-|.-.|+
T Consensus 315 ~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~ 348 (514)
T KOG2055|consen 315 SNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS 348 (514)
T ss_pred CCeEEEcccCceEEeehhhhhhhhheeeeccEEe
Confidence 33666664 7889999999999998888776654
No 67
>KOG0278|consensus
Probab=21.33 E-value=1.6e+02 Score=22.75 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=37.1
Q ss_pred CCceeEEEEeCCeEEEEEecCCeEeEEecCccccceeeecchhh
Q psy2157 20 ESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYV 63 (71)
Q Consensus 20 ~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~LqeVnIap~V 63 (71)
.++|+.|-.+-+|=-+-+.-+|.+..+.+.+|+.|...+.--.|
T Consensus 184 ~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV 227 (334)
T KOG0278|consen 184 NSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNV 227 (334)
T ss_pred CCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccc
Confidence 47788888888999999999999999999999999888765444
No 68
>KOG4547|consensus
Probab=20.95 E-value=2.1e+02 Score=23.64 Aligned_cols=46 Identities=7% Similarity=0.108 Sum_probs=34.1
Q ss_pred eeeeEEEeeecCCCCceeEEEEeCCeEEEEEecCCeEeEEecCcccccee
Q psy2157 7 MNFQKSFDAHPRRESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQD 56 (71)
Q Consensus 7 l~ve~~f~v~~d~~~~V~~Ma~~g~GVWiS~~~~s~lrLfHa~T~e~Lqe 56 (71)
.++-+.|.+. ...+..++.+++ +=+.+.-+.+|++|..+|.|-++-
T Consensus 134 ~~~~~~~~~~---~~~~~sl~is~D-~~~l~~as~~ik~~~~~~kevv~~ 179 (541)
T KOG4547|consen 134 KVIIRIWKEQ---KPLVSSLCISPD-GKILLTASRQIKVLDIETKEVVIT 179 (541)
T ss_pred ceeeeeeccC---CCccceEEEcCC-CCEEEeccceEEEEEccCceEEEE
Confidence 3344444444 456888899988 567788899999999999987764
No 69
>KOG0310|consensus
Probab=20.83 E-value=1.9e+02 Score=23.54 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=37.6
Q ss_pred EEeeecCCCCceeEEEEeCCeEEEEEec--CCeEeEEecCcc-ccceeeecchhhHhhhh
Q psy2157 12 SFDAHPRRESQVRQMTWAGDGVWVSIRL--DSTLRMYNAHTY-QHLQDVDIEPYVSKMLD 68 (71)
Q Consensus 12 ~f~v~~d~~~~V~~Ma~~g~GVWiS~~~--~s~lrLfHa~T~-e~LqeVnIap~V~kmL~ 68 (71)
....|.| -|+|-++.-.-=.|-++. +..+|||.+-+. +..-|+|=..||..+|.
T Consensus 148 ~l~~htD---YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~ 204 (487)
T KOG0310|consen 148 ELSGHTD---YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLA 204 (487)
T ss_pred EecCCcc---eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEE
Confidence 3444444 366666554444444444 899999999998 88899998888887763
No 70
>PTZ00421 coronin; Provisional
Probab=20.45 E-value=4.1e+02 Score=20.95 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=30.2
Q ss_pred CCCceeEEEEeCC--eEEEEEecCCeEeEEecCccccceeee
Q psy2157 19 RESQVRQMTWAGD--GVWVSIRLDSTLRMYNAHTYQHLQDVD 58 (71)
Q Consensus 19 ~~~~V~~Ma~~g~--GVWiS~~~~s~lrLfHa~T~e~LqeVn 58 (71)
....|.++++.-. .+=++-..+.++|+|..++.+.+..+.
T Consensus 124 H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~ 165 (493)
T PTZ00421 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIK 165 (493)
T ss_pred CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEc
Confidence 3467999998754 355666779999999999887766553
No 71
>KOG0646|consensus
Probab=20.04 E-value=1.1e+02 Score=24.93 Aligned_cols=52 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eecCCCCceeEEEEeCCeEEEEEec-CCeEeEEecCccccceeee-cchhhHhh
Q psy2157 15 AHPRRESQVRQMTWAGDGVWVSIRL-DSTLRMYNAHTYQHLQDVD-IEPYVSKM 66 (71)
Q Consensus 15 v~~d~~~~V~~Ma~~g~GVWiS~~~-~s~lrLfHa~T~e~LqeVn-Iap~V~km 66 (71)
+....+++|+|++.+-+|-=+.--. +..+|+|...+.+++--+. -..+|+++
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL 325 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNL 325 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcccccee
Done!