RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2157
         (71 letters)



>gnl|CDD|225189 COG2307, COG2307, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 313

 Score = 27.7 bits (62), Expect = 0.39
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 28  WAGDGVWVSIRLDSTLRMYNAH-TYQHLQDVDIEP 61
            AGDG W S+     LR  +AH TY+      I+P
Sbjct: 187 AAGDGAWESL-----LRSGSAHETYRRRYRAVIDP 216


>gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed.
          Length = 336

 Score = 24.5 bits (54), Expect = 5.9
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 16/65 (24%)

Query: 17  PRRESQVR--QMTWAGD-------GVWVSI------RLDSTLRMYNAHT-YQHLQDVDIE 60
           P ++ ++R   +  AG        G+ + I      R +S   +   H  Y H+Q+V I+
Sbjct: 148 PGKDPELRLETIENAGKLKIPFTTGILIGIGETWEDRAESLEAIAELHERYGHIQEVIIQ 207

Query: 61  PYVSK 65
            +  K
Sbjct: 208 NFSPK 212


>gnl|CDD|219166 pfam06764, DUF1223, Protein of unknown function (DUF1223).  This
           family consists of several hypothetical proteins of
           around 250 residues in length which are found in both
           plants and bacteria. The function of this family is
           unknown.
          Length = 200

 Score = 24.1 bits (53), Expect = 7.6
 Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 8/66 (12%)

Query: 3   WLDPMNFQKSFDAHPRRESQVR---QMTWAGDGVWVSIRLDSTLRM---YNAH--TYQHL 54
             D      +  A   R +       ++  GD + VS      L      +     Y+  
Sbjct: 84  GSDRDAVAAAISAARARPAGASVPVSLSRDGDTLSVSASAAPALAGGGPADVWLVRYEPG 143

Query: 55  QDVDIE 60
             V I+
Sbjct: 144 LTVAIK 149


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0765    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,529,992
Number of extensions: 239070
Number of successful extensions: 250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 3
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)