RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2157
(71 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.090
Identities = 3/12 (25%), Positives = 10/12 (83%), Gaps = 1/12 (8%)
Query: 36 SIR-LDSTLRMY 46
+++ L ++L++Y
Sbjct: 21 ALKKLQASLKLY 32
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 26.0 bits (57), Expect = 0.94
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 18 RRESQVRQMTWAGDGVWVSIRLDSTLRMYNA 48
++V M +GV V + + A
Sbjct: 255 VFGAEVTSMKNVSEGVTVEYTAGGSKKSITA 285
>1omh_A TRWC protein; protein-DNA complex, bacterial conjugation, relaxase,
DNA replication, transferase/DNA complex; HET: DNA;
1.95A {Escherichia coli} SCOP: d.89.1.5 PDB: 1osb_A*
1qx0_A* 1s6m_A* 1zm5_A* 2cdm_A
Length = 293
Score = 25.1 bits (54), Expect = 2.0
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 14 DAHPRRESQVRQMTWAGDGVWVSIRLDSTLR-------MYNAHTYQHLQD 56
D + + MT DG W +++ D ++ +YNA LQ
Sbjct: 157 DPQLHTHAVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQK 206
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET:
PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Length = 393
Score = 24.4 bits (54), Expect = 3.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 16 HPRRESQVRQMTWAGDGVWVSIRLDSTL 43
HP + ++Q A G +S R+
Sbjct: 289 HPNYDVVLKQHRDALGGGMISFRIKGGA 316
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 24.5 bits (54), Expect = 3.1
Identities = 5/29 (17%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 18 RRESQVRQMTWAGDGVWVSIRLDS--TLR 44
E+++ + +RL+ LR
Sbjct: 126 LFETRIEAVQRDERHAIDQVRLNDGRVLR 154
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 24.6 bits (53), Expect = 3.3
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 38 RLDSTLRMYNAHTYQHLQDVDIEP--YVSKMLDCL 70
L ++ +A Y H Q+ +E + + ++CL
Sbjct: 206 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL 240
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics,
joint CENT structural genomics, JCSG, protein structure
initiative; HET: MSE PG4; 1.54A {Bacillus halodurans
c-125}
Length = 171
Score = 24.2 bits (52), Expect = 4.3
Identities = 5/39 (12%), Positives = 14/39 (35%)
Query: 32 GVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLDCL 70
W + ++ L H D D++ + + + +
Sbjct: 21 STWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAM 59
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 23.9 bits (52), Expect = 6.1
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 11 KSFDAHPRRESQVRQMTWAGDGVW-VSIRLDSTLRMYNAHTYQHLQ 55
+S E+ VR + W + D +R++N +T + +
Sbjct: 49 RSIQVT---ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV 91
>1w6g_A Phenylethylamine oxidase; copper containing, metal-binding,
oxidoreductase, TPQ, quinone, holoenzyme; HET: TPQ GOL;
1.55A {Arthrobacter globiformis} SCOP: b.30.2.1 d.17.2.1
d.17.2.1 PDB: 1w6c_A* 1rjo_A* 2bt3_A* 2cfd_A* 2cfg_A*
2cfk_A* 2cfl_A* 2cfw_A* 2cg0_A* 2cg1_A* 1w4n_A* 1sih_A*
1sii_A* 1w5z_A* 3kii_A* 3kn4_A* 1iqy_A* 1avl_A* 1av4_A*
1iqx_A* ...
Length = 646
Score = 23.7 bits (50), Expect = 7.4
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 24 RQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSK 65
R+ +A +WV+ D QH + Y+++
Sbjct: 530 RRAAFATKDLWVTRYADDERYPTGDFVNQHSGGAGLPSYIAQ 571
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 23.4 bits (50), Expect = 9.7
Identities = 4/35 (11%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 38 RLDSTLRMYNAHTYQHLQDVDIEP--YVSKMLDCL 70
L+ + + ++HL ++ + + ++ L
Sbjct: 219 MLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNL 253
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 23.3 bits (51), Expect = 9.8
Identities = 2/37 (5%), Positives = 8/37 (21%)
Query: 19 RESQVRQMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQ 55
+ + T +Y + + +
Sbjct: 24 AADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWE 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.446
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,100,185
Number of extensions: 45409
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 17
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.4 bits)