RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2157
         (71 letters)



>d1omha_ d.89.1.5 (A:) TrwC relaxase {Escherichia coli [TaxId: 562]}
          Length = 293

 Score = 23.7 bits (51), Expect = 2.0
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 14  DAHPRRESQVRQMTWAGDGVWVSIRLDSTLR-------MYNAHTYQHLQDVDIE 60
           D      + +  MT   DG W +++ D  ++       +YNA     LQ +  +
Sbjct: 157 DPQLHTHAVILNMTKRSDGQWRALKNDEIVKATRYLGAVYNAELAHELQKLGYQ 210


>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 188

 Score = 23.2 bits (49), Expect = 3.2
 Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 38 RLDSTLRMYNAHTYQHLQDVDIEP--YVSKMLDCL 70
           L   ++  +A  Y H Q+  +E   +  + ++CL
Sbjct: 11 NLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL 45


>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 99

 Score = 22.3 bits (47), Expect = 7.0
 Identities = 5/45 (11%), Positives = 14/45 (31%)

Query: 25 QMTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLDC 69
          ++    +G  +     S +      ++  L   +  P  +    C
Sbjct: 36 EIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC 80


>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal
          domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
          Length = 103

 Score = 21.9 bits (46), Expect = 8.1
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 26 MTWAGDGVWVSIRLDSTLRMYNAHTYQHLQDVDIEPYVSKMLDC 69
          + W    V V     + +   +  ++Q    ++  P  S +  C
Sbjct: 37 VNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSC 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.446 

Gapped
Lambda     K      H
   0.267   0.0437    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,526
Number of extensions: 9690
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 71
Length of database: 2,407,596
Length adjustment: 39
Effective length of query: 32
Effective length of database: 1,872,126
Effective search space: 59908032
Effective search space used: 59908032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)