BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2158
(98 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 62 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 93
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 58 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 89
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 63 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 94
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 33.5 bits (75), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
+++DS+ P D+G YTC NE+G
Sbjct: 76 IIMDSVVPSDKGNYTCIVENEYG 98
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
+++DS+ P D+G YTC NE+G
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYG 97
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
Length = 225
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
+++DS+ P D+G YTC NE+G
Sbjct: 75 IIMDSVVPSDKGNYTCIVENEYG 97
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 33.1 bits (74), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 59 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 90
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 60 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 91
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 61 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 32.7 bits (73), Expect = 0.050, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
LV++S+ P D G YTC N+FG
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFG 204
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ YD + GN L I + D+ +YTC A N GEA C
Sbjct: 90 IDYD-EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47
+P +G LV D + D GEY+C ARN +G + + ++ E V
Sbjct: 167 NPTTGE--LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ YD + GN L I + D+ +YTC A N GEA C
Sbjct: 90 IDYD-EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTA 128
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
DP+SG+ L+ D + D GEY C A+N +G A+
Sbjct: 165 DPKSGD--LIFDPVTAFDSGEYYCQAQNGYGTAM 196
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 32.0 bits (71), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
LV++S+ P D G YTC N+FG
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFG 96
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 32.0 bits (71), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+ +S+ P D+G YTC NE+G
Sbjct: 68 YKVRNQHWSLIXESVVPSDKGNYTCVVENEYG 99
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
Y ++ + L+ +S+ P D+G YTC NE+G
Sbjct: 61 YKVRNQHWSLIXESVVPSDKGNYTCVVENEYG 92
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 18/78 (23%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFGE----AICAVFIQPECVNVPLYXXXXXXXXXHRS 64
N L + +I D G Y C A N+ GE A VF+QP + +
Sbjct: 57 NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQL--------------K 102
Query: 65 EKTAYSNGSQSIVSEYSG 82
+T Y NG ++V + G
Sbjct: 103 NETTYENGQVTLVCDAEG 120
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
GLVI + GD+G Y C A NE G+ +Q
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
++G L I P D G YTC A N G+ C+ ++
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 20 GDEGEYTCCARNEFGEAICAVFIQPECVNVPL 51
GD G YTC A GEA + +I+ + VP+
Sbjct: 72 GDTGRYTCIASTPSGEATWSAYIEVQEFGVPV 103
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
Y +G V L+I + D G YT A NE G C
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC 101
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 29.3 bits (64), Expect = 0.57, Method: Composition-based stats.
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 22 EGEYTCCARNEFGEAI 37
EGEY C ARN+FG A+
Sbjct: 89 EGEYQCFARNKFGTAL 104
Score = 25.4 bits (54), Expect = 7.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFG 34
N L I ++ D GEY C A N+ G
Sbjct: 274 NKALRITNVSEEDSGEYFCLASNKMG 299
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L+I + DE EY C A N+ GE + ++
Sbjct: 72 LIIKKVDKSDEAEYICIAENKAGEQDATIHLK 103
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I ++ DE EY C A N+ GE ++ ++
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ GL I+ + D+GEYT A+N +G VF+
Sbjct: 431 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 464
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.5 bits (62), Expect = 0.95, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ GL I+ + D+GEYT A+N +G VF+
Sbjct: 537 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 21 DEGEYTCCARNEFGEAI 37
DEG Y C ARN GEA+
Sbjct: 83 DEGVYVCVARNYLGEAV 99
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 21 DEGEYTCCARNEFGEAI 37
DEG Y C ARN GEA+
Sbjct: 83 DEGVYVCVARNYLGEAV 99
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 27.3 bits (59), Expect = 1.9, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE-AICAVFIQPE 45
LVI+ + D GEYTC A N G A AV + E
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKE 97
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L + + GD G+YTC A N G+ C+
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCS 282
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ G L+ + + D G Y C A+N GEA V
Sbjct: 58 EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 21 DEGEYTCCARNEFGE 35
DEG YTC A NE GE
Sbjct: 74 DEGVYTCIATNEVGE 88
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 11 GLVIDSIGPGDEGEYTCCARN 31
L I + PGD G Y C ARN
Sbjct: 178 ALQISRLQPGDSGVYRCSARN 198
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L+I ++ P DEG Y C A+N G
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVG 194
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 21 DEGEYTCCARNEFGEAI 37
D GEY C A+N G+A+
Sbjct: 80 DGGEYWCVAKNRVGQAV 96
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L+I ++ P DEG Y C A+N G
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVG 194
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 21 DEGEYTCCARNEFGEAI 37
D GEY C A+N G+A+
Sbjct: 80 DGGEYWCVAKNRVGQAV 96
>pdb|2F53|D Chain D, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 193
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
S D SG L I + PGD Y C R G + F
Sbjct: 66 SLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 105
>pdb|2BNU|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
S D SG L I + PGD Y C R G + F
Sbjct: 64 SLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 103
>pdb|2BNQ|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
S D SG L I + PGD Y C R G + F
Sbjct: 64 SLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 103
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L + + GD G+YTC A N G+ C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCS 90
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L + + GD G+YTC A N G+ C+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCS 90
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 12 LVIDSIGPGDEGEYT 26
LVID + P DEG+YT
Sbjct: 65 LVIDDVRPEDEGDYT 79
>pdb|2PYE|D Chain D, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Revealnative Diagonal Binding
Geometry Tcr Clone C5c1 Complexed With Mhc
Length = 195
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCAR 30
S D SG+ L I + PGD Y C R
Sbjct: 66 SLDKSSGSSTLYIAASQPGDSATYLCAVR 94
>pdb|2P5E|D Chain D, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Reveal Native Diagonal Binding
Geometry
Length = 195
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCAR 30
S D SG+ L I + PGD Y C R
Sbjct: 66 SLDKSSGSSTLYIAASQPGDSATYLCAVR 94
>pdb|2P5W|D Chain D, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Reveal Native Diagonal Binding
Geometry
Length = 192
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCAR 30
S D SG+ L I + PGD Y C R
Sbjct: 65 SLDKSSGSSTLYIAASQPGDSATYLCAVR 93
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 20 GDEGEYTCCARNEFGEAICAVFIQ 43
GD G YTC A NE+G C ++
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLE 95
>pdb|2PYF|A Chain A, Crystal Structures Of High Affinity Human T-Cell
Receptors Bound To Pmhc Revealnative Diagonal Binding
Geometry Unbound Tcr Clone 5-1
Length = 205
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCAR 30
S D SG+ L I + PGD Y C R
Sbjct: 65 SLDKSSGSSTLYIAASQPGDSATYLCAVR 93
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGE----AICAVFIQ 43
Y + N L + +I D G Y C A N+ GE A VF+Q
Sbjct: 241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285
>pdb|2F54|D Chain D, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|K Chain K, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 206
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
S D +G+ L I + PGD Y C R G + F
Sbjct: 65 SLDKSAGSSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 104
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARN 31
+S+ GL++ + P D G Y C ARN
Sbjct: 61 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|1PKQ|E Chain E, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|J Chain J, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 139
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLY 52
G V L I ++ DEG YTC R+ + AV ++ V P Y
Sbjct: 83 GKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK---VEDPFY 124
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGE----AICAVFIQ 43
+ N L + +I D G Y C A N+ GE A VF+Q
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 189
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARN 31
+S+ GL++ + P D G Y C ARN
Sbjct: 60 LSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,624,596
Number of Sequences: 62578
Number of extensions: 82540
Number of successful extensions: 434
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 93
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)