Query psy2158
Match_columns 98
No_of_seqs 163 out of 1176
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 17:47:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05735 Ig8_DSCAM Eight immuno 99.2 4E-11 8.6E-16 75.0 6.3 42 10-51 47-88 (88)
2 cd05762 Ig8_MLCK Eighth immuno 99.2 8E-11 1.7E-15 75.1 6.7 45 7-51 53-97 (98)
3 cd05854 Ig6_Contactin-2 Sixth 99.1 3.9E-10 8.4E-15 70.1 6.1 41 8-48 45-85 (85)
4 cd05892 Ig_Myotilin_C C-termin 99.1 4.6E-10 9.9E-15 68.6 5.9 38 7-44 38-75 (75)
5 cd05853 Ig6_Contactin-4 Sixth 99.0 3.3E-10 7.2E-15 71.2 4.3 40 9-48 46-85 (85)
6 cd04970 Ig6_Contactin_like Six 99.0 5.1E-10 1.1E-14 68.9 5.1 41 8-48 45-85 (85)
7 cd05893 Ig_Palladin_C C-termin 99.0 1.5E-09 3.1E-14 66.3 5.8 37 8-44 39-75 (75)
8 cd05744 Ig_Myotilin_C_like Imm 99.0 2.2E-09 4.8E-14 65.1 6.4 38 7-44 38-75 (75)
9 KOG3513|consensus 99.0 6.7E-10 1.5E-14 94.4 5.3 74 10-84 577-652 (1051)
10 cd05748 Ig_Titin_like Immunogl 99.0 3.3E-09 7.1E-14 63.5 6.4 39 6-44 36-74 (74)
11 cd04974 Ig3_FGFR Third immunog 98.9 2.3E-09 4.9E-14 67.0 4.2 36 9-44 54-89 (90)
12 cd05894 Ig_C5_MyBP-C C5 immuno 98.9 8.2E-09 1.8E-13 64.2 6.3 37 8-44 50-86 (86)
13 cd05870 Ig5_NCAM-2 Fifth immun 98.9 5.8E-09 1.2E-13 65.9 5.6 38 7-44 61-98 (98)
14 cd05852 Ig5_Contactin-1 Fifth 98.9 4.1E-09 8.9E-14 63.9 4.6 36 9-44 38-73 (73)
15 cd05876 Ig3_L1-CAM Third immun 98.8 5.2E-09 1.1E-13 62.6 4.7 38 8-45 34-71 (71)
16 cd05725 Ig3_Robo Third immunog 98.8 5.3E-09 1.2E-13 61.8 4.5 36 9-44 34-69 (69)
17 cd05732 Ig5_NCAM-1_like Fifth 98.8 1.4E-08 3.1E-13 63.2 6.2 38 7-44 59-96 (96)
18 cd05726 Ig4_Robo Fhird immunog 98.8 1E-08 2.2E-13 63.7 5.4 39 10-48 47-85 (90)
19 cd05858 Ig3_FGFR-2 Third immun 98.8 7.7E-09 1.7E-13 64.4 4.4 35 10-44 55-89 (90)
20 cd05763 Ig_1 Subgroup of the i 98.8 1.3E-08 2.8E-13 61.1 5.3 35 10-44 40-74 (75)
21 cd05865 Ig1_NCAM-1 First immun 98.8 1.6E-08 3.6E-13 64.4 6.0 37 8-44 58-95 (96)
22 cd05869 Ig5_NCAM-1 Fifth immun 98.8 2.2E-08 4.9E-13 63.0 6.3 36 9-44 62-97 (97)
23 cd05745 Ig3_Peroxidasin Third 98.8 8.4E-09 1.8E-13 61.9 4.1 36 9-44 39-74 (74)
24 cd05867 Ig4_L1-CAM_like Fourth 98.8 1.7E-08 3.7E-13 60.9 5.1 36 9-44 40-75 (76)
25 cd05765 Ig_3 Subgroup of the i 98.8 1.7E-08 3.6E-13 60.8 5.0 36 9-44 46-81 (81)
26 cd04971 Ig_TrKABC_d5 Fifth dom 98.8 2.5E-08 5.5E-13 61.6 5.8 36 8-43 44-79 (81)
27 cd05731 Ig3_L1-CAM_like Third 98.7 1.6E-08 3.4E-13 59.5 4.2 37 9-45 35-71 (71)
28 cd04969 Ig5_Contactin_like Fif 98.7 1.8E-08 3.9E-13 60.3 4.4 35 10-44 39-73 (73)
29 cd05855 Ig_TrkB_d5 Fifth domai 98.7 3.3E-08 7.1E-13 61.3 5.7 36 8-43 42-77 (79)
30 cd05857 Ig2_FGFR Second immuno 98.7 3.9E-08 8.4E-13 59.9 5.9 37 8-44 49-85 (85)
31 cd04978 Ig4_L1-NrCAM_like Four 98.7 2.3E-08 5E-13 59.6 4.8 36 9-44 40-75 (76)
32 cd05851 Ig3_Contactin-1 Third 98.7 2.6E-08 5.7E-13 62.0 5.2 36 10-45 53-88 (88)
33 cd05723 Ig4_Neogenin Fourth im 98.7 2.6E-08 5.6E-13 59.5 4.9 34 11-44 38-71 (71)
34 cd05863 Ig2_VEGFR-3 Second imm 98.7 2.6E-08 5.7E-13 59.8 4.8 37 8-44 29-65 (67)
35 cd05737 Ig_Myomesin_like_C C-t 98.7 3.3E-08 7.1E-13 61.7 5.3 37 8-44 56-92 (92)
36 cd05746 Ig4_Peroxidasin Fourth 98.7 2.6E-08 5.7E-13 59.1 4.5 34 9-42 35-68 (69)
37 cd04968 Ig3_Contactin_like Thi 98.7 3.2E-08 7E-13 61.0 5.0 38 8-45 51-88 (88)
38 cd04975 Ig4_SCFR_like Fourth i 98.7 3.9E-08 8.5E-13 63.3 5.5 37 9-45 64-100 (101)
39 cd05730 Ig3_NCAM-1_like Third 98.7 5.5E-08 1.2E-12 60.7 6.0 38 9-46 57-94 (95)
40 cd05856 Ig2_FGFRL1-like Second 98.7 4.7E-08 1E-12 58.6 5.5 38 7-44 45-82 (82)
41 cd05736 Ig2_Follistatin_like S 98.7 5.3E-08 1.2E-12 58.4 5.7 38 9-46 38-75 (76)
42 cd05773 Ig8_hNephrin_like Eigh 98.7 5E-08 1.1E-12 63.2 5.7 40 9-48 68-108 (109)
43 cd05750 Ig_Pro_neuregulin Immu 98.7 5.8E-08 1.2E-12 57.6 5.4 35 7-41 40-74 (75)
44 cd05742 Ig1_VEGFR_like First i 98.7 6.4E-08 1.4E-12 59.3 5.6 37 8-44 47-83 (84)
45 cd05764 Ig_2 Subgroup of the i 98.7 3.5E-08 7.5E-13 58.9 4.2 35 10-44 40-74 (74)
46 PF07679 I-set: Immunoglobulin 98.7 4.9E-08 1.1E-12 59.6 4.9 39 6-44 52-90 (90)
47 cd05859 Ig4_PDGFR-alpha Fourth 98.7 4E-08 8.8E-13 63.1 4.7 37 9-45 64-100 (101)
48 cd05868 Ig4_NrCAM Fourth immun 98.7 6.1E-08 1.3E-12 58.7 5.1 35 10-44 41-75 (76)
49 cd04976 Ig2_VEGFR Second immun 98.7 5E-08 1.1E-12 58.5 4.6 36 9-44 34-69 (71)
50 cd05760 Ig2_PTK7 Second immuno 98.6 7E-08 1.5E-12 58.6 5.0 36 9-44 37-72 (77)
51 cd05864 Ig2_VEGFR-2 Second imm 98.6 4.9E-08 1.1E-12 58.9 4.2 35 10-44 34-68 (70)
52 cd04972 Ig_TrkABC_d4 Fourth do 98.6 1.5E-07 3.2E-12 58.4 6.5 37 8-44 54-90 (90)
53 cd05743 Ig_Perlecan_D2_like Im 98.6 7.8E-08 1.7E-12 58.3 5.1 38 7-44 39-76 (78)
54 cd05747 Ig5_Titin_like M5, fif 98.6 1.4E-07 3.1E-12 58.7 5.9 36 7-42 56-91 (92)
55 cd05895 Ig_Pro_neuregulin-1 Im 98.6 1.2E-07 2.5E-12 57.0 5.3 34 8-41 42-75 (76)
56 cd05866 Ig1_NCAM-2 First immun 98.6 1.4E-07 3E-12 59.8 5.8 37 8-44 54-91 (92)
57 cd05891 Ig_M-protein_C C-termi 98.6 1.5E-07 3.3E-12 59.0 5.5 36 9-44 57-92 (92)
58 cd05734 Ig7_DSCAM Seventh immu 98.6 1.2E-07 2.6E-12 57.4 4.6 36 9-44 43-79 (79)
59 cd04977 Ig1_NCAM-1_like First 98.6 2E-07 4.3E-12 58.5 5.5 37 8-44 55-92 (92)
60 cd05738 Ig2_RPTP_IIa_LAR_like 98.5 2E-07 4.3E-12 56.1 4.7 37 9-45 37-74 (74)
61 cd05728 Ig4_Contactin-2-like F 98.5 1.6E-07 3.5E-12 57.9 4.4 35 10-44 51-85 (85)
62 cd05862 Ig1_VEGFR First immuno 98.5 3E-07 6.5E-12 57.2 4.8 38 8-45 48-85 (86)
63 cd04973 Ig1_FGFR First immunog 98.5 3.4E-07 7.3E-12 55.8 4.7 34 11-44 46-79 (79)
64 cd05756 Ig1_IL1R_like First im 98.4 5.2E-07 1.1E-11 57.1 5.0 35 10-44 60-94 (94)
65 cd05740 Ig_CEACAM_D4 Fourth im 98.4 6.5E-07 1.4E-11 56.3 5.3 36 9-44 54-90 (91)
66 cd05861 Ig1_PDGFR-alphabeta Fr 98.4 1.1E-06 2.3E-11 54.3 6.0 37 9-45 45-83 (84)
67 cd05724 Ig2_Robo Second immuno 98.4 5.8E-07 1.3E-11 54.6 4.1 35 9-43 50-85 (86)
68 cd05739 Ig3_RPTP_IIa_LAR_like 98.3 9E-07 2E-11 52.9 4.5 34 8-43 36-69 (69)
69 cd05758 Ig5_KIRREL3-like Fifth 98.3 1.1E-06 2.4E-11 55.3 5.0 33 10-42 64-97 (98)
70 cd05714 Ig_CSPGs_LP Immunoglob 98.3 1.6E-06 3.5E-11 55.1 5.7 42 6-47 64-105 (106)
71 cd05729 Ig2_FGFR_like Second i 98.3 2.5E-06 5.3E-11 51.2 5.7 37 8-44 49-85 (85)
72 cd05754 Ig3_Perlecan_like Thir 98.3 1.5E-06 3.2E-11 53.2 4.2 34 9-42 51-84 (85)
73 cd05713 Ig_MOG_like Immunoglob 98.2 3.5E-06 7.6E-11 52.9 5.6 39 6-44 61-99 (100)
74 KOG3513|consensus 98.2 2.9E-06 6.2E-11 72.8 6.7 40 9-48 478-517 (1051)
75 cd05757 Ig2_IL1R_like Second i 98.2 2.8E-06 6.1E-11 53.7 5.1 37 8-44 50-86 (92)
76 cd05877 Ig_LP_like Immunoglobu 98.2 6.1E-06 1.3E-10 52.4 5.8 41 7-47 65-105 (106)
77 cd05898 Ig5_KIRREL3 Fifth immu 98.1 6.3E-06 1.4E-10 53.0 5.5 36 7-42 61-97 (98)
78 cd07693 Ig1_Robo First immunog 98.1 6E-06 1.3E-10 50.7 5.0 28 17-44 71-99 (100)
79 cd05886 Ig1_Nectin-1_like Firs 98.1 8.6E-06 1.9E-10 52.3 5.8 39 6-44 59-98 (99)
80 cd05888 Ig1_Nectin-4_like Frst 98.1 9.7E-06 2.1E-10 51.6 5.8 39 6-44 60-99 (100)
81 cd07701 Ig1_Necl-3 First (N-te 98.1 1E-05 2.2E-10 51.2 5.7 37 7-44 59-95 (95)
82 cd05871 Ig_Semaphorin_classIII 98.1 7.1E-06 1.5E-10 51.6 4.8 37 10-46 53-90 (91)
83 cd05771 IgC_Tapasin_R Tapasin- 98.1 6.9E-06 1.5E-10 54.7 4.9 39 11-49 2-40 (139)
84 cd05733 Ig6_L1-CAM_like Sixth 98.1 7.4E-06 1.6E-10 49.5 4.2 31 8-38 37-71 (77)
85 cd05882 Ig1_Necl-1 First (N-te 98.0 1.5E-05 3.2E-10 50.7 5.7 36 8-44 60-95 (95)
86 cd05848 Ig1_Contactin-5 First 98.0 8.2E-06 1.8E-10 51.3 4.3 29 10-38 58-87 (94)
87 cd05900 Ig_Aggrecan Immunoglob 98.0 1.4E-05 2.9E-10 52.5 5.5 42 6-47 70-111 (112)
88 cd05874 Ig6_NrCAM Sixth immuno 98.0 1.4E-05 3.1E-10 48.5 5.0 31 9-39 38-72 (77)
89 cd05878 Ig_Aggrecan_like Immun 98.0 2E-05 4.3E-10 51.1 5.9 42 6-47 68-109 (110)
90 cd05717 Ig1_Necl-1-3_like Firs 98.0 2.3E-05 4.9E-10 48.9 5.9 36 8-44 60-95 (95)
91 cd05901 Ig_Versican Immunoglob 98.0 2.2E-05 4.7E-10 52.2 6.0 43 5-47 74-116 (117)
92 cd05850 Ig1_Contactin-2 First 98.0 1.6E-05 3.4E-10 49.9 5.1 33 10-42 58-92 (94)
93 cd05849 Ig1_Contactin-1 First 98.0 1.9E-05 4E-10 49.8 5.2 33 10-42 57-91 (93)
94 cd05718 Ig1_PVR_like First imm 98.0 3.4E-05 7.3E-10 47.9 6.3 37 8-44 60-97 (98)
95 cd05722 Ig1_Neogenin First imm 98.0 1.5E-05 3.2E-10 49.7 4.5 34 11-44 55-95 (95)
96 cd05875 Ig6_hNeurofascin_like 98.0 3.1E-05 6.7E-10 47.0 5.6 31 9-39 38-72 (77)
97 cd07702 Ig2_VEGFR-1 Second imm 97.9 2.1E-05 4.5E-10 47.8 4.4 29 10-38 36-64 (72)
98 cd05879 Ig_P0 Immunoglobulin ( 97.9 3E-05 6.6E-10 51.1 5.4 33 5-37 75-107 (116)
99 KOG4194|consensus 97.9 2.3E-05 4.9E-10 64.8 5.5 40 11-50 670-709 (873)
100 cd04967 Ig1_Contactin First Ig 97.9 1.9E-05 4.1E-10 48.9 3.9 29 10-38 58-87 (91)
101 cd05902 Ig_Neurocan Immunoglob 97.9 3.4E-05 7.4E-10 50.5 5.3 42 6-47 68-109 (110)
102 cd05887 Ig1_Nectin-3_like Firs 97.8 6E-05 1.3E-09 48.3 5.8 40 5-44 55-95 (96)
103 smart00410 IG_like Immunoglobu 97.8 7.1E-05 1.5E-09 43.3 5.5 36 9-44 50-85 (86)
104 smart00409 IG Immunoglobulin. 97.8 7.1E-05 1.5E-09 43.3 5.5 36 9-44 50-85 (86)
105 smart00408 IGc2 Immunoglobulin 97.8 2.9E-05 6.3E-10 42.8 3.4 27 8-34 37-63 (63)
106 cd04979 Ig_Semaphorin_C Immuno 97.8 4.8E-05 1E-09 46.8 4.5 36 11-46 52-88 (89)
107 cd05897 Ig2_IL1R2_like Second 97.8 6.5E-05 1.4E-09 48.1 5.0 30 8-37 53-82 (95)
108 PHA02826 IL-1 receptor-like pr 97.7 6.2E-05 1.3E-09 54.8 4.9 39 9-47 97-135 (227)
109 cd05880 Ig_EVA1 Immunoglobulin 97.7 7E-05 1.5E-09 48.8 4.7 32 4-35 73-104 (115)
110 cd07690 Ig1_CD4 First immunogl 97.7 4.6E-05 9.9E-10 48.5 3.5 31 7-37 62-92 (94)
111 cd05715 Ig_P0-like Immunoglobu 97.7 9.8E-05 2.1E-09 47.8 5.0 33 4-36 74-106 (116)
112 PHA02785 IL-beta-binding prote 97.6 9.9E-05 2.1E-09 56.0 5.2 42 10-51 177-222 (326)
113 cd05846 Ig1_MRC-OX-2_like Firs 97.6 0.00015 3.2E-09 45.6 5.0 39 6-44 57-96 (97)
114 cd05753 Ig2_FcgammaR_like Seco 97.6 6.6E-05 1.4E-09 46.2 3.0 30 8-37 46-75 (83)
115 cd05775 Ig_SLAM-CD84_like_N N- 97.6 0.00031 6.6E-09 44.3 5.7 38 7-44 58-96 (97)
116 PHA02785 IL-beta-binding prote 97.5 0.00026 5.6E-09 53.7 6.2 37 11-47 83-119 (326)
117 cd05749 Ig2_Tyro3_like Second 97.5 0.00018 3.9E-09 44.4 4.2 31 10-42 49-80 (81)
118 cd05774 Ig_CEACAM_D1 First imm 97.5 0.0002 4.4E-09 46.4 4.6 36 8-43 68-104 (105)
119 cd05727 Ig2_Contactin-2-like S 97.5 5.4E-05 1.2E-09 48.6 1.9 28 9-36 59-86 (96)
120 cd05860 Ig4_SCFR Fourth immuno 97.4 0.00048 1E-08 44.8 5.7 36 10-45 65-100 (101)
121 KOG4222|consensus 97.4 7.1E-05 1.5E-09 64.9 2.2 77 8-85 472-566 (1281)
122 cd05752 Ig1_FcgammaR_like Frst 97.4 0.00012 2.6E-09 44.8 2.4 32 9-43 46-77 (78)
123 cd04983 IgV_TCR_alpha_like Imm 97.4 0.00023 5E-09 44.9 3.8 30 5-34 65-94 (109)
124 PF13927 Ig_3: Immunoglobulin 97.4 0.00019 4.1E-09 41.3 3.0 25 7-31 51-75 (75)
125 cd00099 IgV Immunoglobulin var 97.4 0.00024 5.2E-09 44.3 3.5 27 8-34 65-91 (105)
126 cd05873 Ig_Sema4D_like Immunog 97.4 0.00029 6.4E-09 44.3 3.8 24 10-33 48-71 (87)
127 cd05741 Ig_CEACAM_D1_like Firs 97.4 0.00052 1.1E-08 41.9 4.9 33 10-42 57-90 (92)
128 cd05896 Ig1_IL1RAPL-1_like Fir 97.3 0.00045 9.8E-09 45.1 4.5 35 10-44 70-104 (104)
129 PF07686 V-set: Immunoglobulin 97.3 0.00041 8.9E-09 43.0 4.1 27 6-32 75-101 (114)
130 KOG4221|consensus 97.2 0.0006 1.3E-08 59.6 5.6 84 8-91 289-387 (1381)
131 PF00047 ig: Immunoglobulin do 97.2 0.00028 6E-09 40.3 2.5 18 12-29 47-64 (64)
132 cd05889 Ig1_DNAM-1_like First 97.2 0.0013 2.8E-08 42.0 5.6 35 8-42 58-93 (96)
133 PF13895 Ig_2: Immunoglobulin 97.2 0.00041 8.9E-09 40.5 2.9 33 12-44 47-80 (80)
134 cd05845 Ig2_L1-CAM_like Second 97.0 0.00054 1.2E-08 43.9 2.5 29 8-36 56-85 (95)
135 PHA02633 hypothetical protein; 97.0 0.0025 5.4E-08 38.1 4.9 39 8-46 16-54 (63)
136 cd05716 Ig_pIgR Immunoglobulin 96.8 0.0028 6E-08 39.4 4.5 30 4-33 58-87 (98)
137 smart00406 IGv Immunoglobulin 96.8 0.0011 2.4E-08 38.9 2.3 22 7-28 59-80 (81)
138 cd05712 Ig_Siglec_N Immunoglob 96.7 0.0025 5.4E-08 41.4 3.8 29 4-32 74-102 (119)
139 cd05881 Ig1_Necl-2 First (N-te 96.7 0.0078 1.7E-07 38.4 5.9 25 7-31 59-83 (95)
140 PHA02826 IL-1 receptor-like pr 96.6 0.0041 8.9E-08 45.3 4.7 27 8-34 186-212 (227)
141 cd05899 IgV_TCR_beta Immunoglo 96.6 0.0028 6E-08 40.4 3.3 27 8-34 70-96 (110)
142 cd05751 Ig1_LILRB1_like First 96.6 0.0032 7E-08 39.0 3.5 25 8-32 51-75 (91)
143 cd04980 IgV_L_kappa Immunoglob 96.6 0.003 6.5E-08 40.0 3.3 26 7-32 68-93 (106)
144 cd04984 IgV_L_lambda Immunoglo 96.5 0.0044 9.6E-08 38.6 3.9 26 7-32 60-85 (98)
145 cd00096 Ig Immunoglobulin doma 96.5 0.0083 1.8E-07 32.3 4.6 29 7-35 40-68 (74)
146 cd04982 IgV_TCR_gamma Immunogl 96.5 0.0035 7.6E-08 40.1 3.2 25 7-31 74-98 (116)
147 cd07706 IgV_TCR_delta Immunogl 96.4 0.0038 8.3E-08 40.1 3.1 28 4-31 66-93 (116)
148 PHA03376 BARF1; Provisional 96.3 0.012 2.5E-07 42.8 5.2 31 6-36 83-113 (221)
149 cd07700 IgV_CD8_beta Immunoglo 96.2 0.0062 1.3E-07 38.8 3.3 26 6-31 68-93 (107)
150 KOG4222|consensus 96.2 0.0035 7.5E-08 54.8 2.5 43 7-49 275-317 (1281)
151 cd05872 Ig_Sema4B_like Immunog 96.1 0.013 2.9E-07 36.6 4.5 32 11-43 48-79 (85)
152 PHA02987 Ig domain OX-2-like p 96.0 0.018 3.8E-07 41.3 5.2 41 7-47 82-124 (189)
153 cd05759 Ig2_KIRREL3-like Secon 95.8 0.021 4.5E-07 34.3 4.3 33 10-42 46-78 (82)
154 cd05720 Ig_CD8_alpha Immunoglo 95.8 0.011 2.3E-07 37.7 3.1 25 7-31 66-90 (104)
155 KOG4221|consensus 95.7 0.027 5.9E-07 49.8 5.8 75 7-82 571-653 (1381)
156 KOG4194|consensus 95.6 0.016 3.4E-07 48.5 4.0 39 10-48 574-613 (873)
157 cd05885 Ig2_Necl-4 Second immu 95.6 0.033 7.2E-07 34.5 4.5 28 9-36 42-69 (80)
158 cd04981 IgV_H Immunoglobulin ( 95.2 0.025 5.3E-07 36.8 3.2 25 7-31 73-97 (117)
159 cd05711 Ig_FcalphaRI Immunoglo 93.5 0.16 3.5E-06 31.6 4.1 22 9-30 54-75 (94)
160 PF08204 V-set_CD47: CD47 immu 90.8 0.13 2.8E-06 34.8 1.3 38 6-44 82-119 (130)
161 cd07694 Ig2_CD4 Second immunog 90.2 1.5 3.3E-05 27.8 5.7 39 8-46 49-87 (88)
162 PF11465 Receptor_2B4: Natural 88.4 0.92 2E-05 29.9 3.8 36 8-44 69-104 (108)
163 cd00098 IgC Immunoglobulin Con 87.6 0.73 1.6E-05 27.8 2.9 25 11-35 63-87 (95)
164 cd07691 Ig_CD3_gamma_delta Imm 87.6 0.71 1.5E-05 28.1 2.7 23 9-31 32-54 (69)
165 cd05721 IgV_CTLA-4 Immunoglobu 86.9 0.98 2.1E-05 30.0 3.4 27 3-29 67-93 (115)
166 KOG4597|consensus 86.1 0.89 1.9E-05 37.1 3.3 38 7-44 254-291 (560)
167 PF07354 Sp38: Zona-pellucida- 84.7 0.86 1.9E-05 34.4 2.5 26 8-33 35-60 (271)
168 PHA03269 envelope glycoprotein 84.4 5.1 0.00011 32.9 6.9 79 7-86 286-381 (566)
169 PHA02982 hypothetical protein; 81.2 2.2 4.8E-05 31.5 3.5 38 7-44 97-135 (251)
170 cd05761 Ig2_Necl-1-4_like Seco 80.5 4.6 0.0001 24.1 4.3 25 11-35 46-70 (82)
171 cd05883 Ig2_Necl-2 Second immu 77.1 11 0.00024 23.3 5.2 26 8-33 42-67 (82)
172 PHA03283 envelope glycoprotein 71.4 25 0.00055 29.1 7.3 39 8-46 132-170 (542)
173 cd07705 Ig2_Necl-1 Second immu 70.6 14 0.0003 22.3 4.5 26 10-35 46-71 (83)
174 KOG1480|consensus 68.6 3.3 7.2E-05 35.7 1.8 29 8-36 181-209 (909)
175 PHA03273 envelope glycoprotein 68.4 28 0.00061 28.4 6.9 77 9-86 197-290 (486)
176 PHA03042 CD47-like protein; Pr 66.3 16 0.00034 27.9 4.9 32 9-41 70-101 (286)
177 cd05755 Ig2_ICAM-1_like Second 65.8 10 0.00023 24.2 3.4 27 8-35 60-87 (100)
178 PHA03286 envelope glycoprotein 65.4 52 0.0011 27.0 7.8 38 8-45 125-163 (492)
179 PHA03282 envelope glycoprotein 63.0 15 0.00034 30.1 4.5 39 9-47 123-163 (540)
180 PHA03271 envelope glycoprotein 62.2 31 0.00068 28.0 6.0 78 6-85 203-298 (490)
181 cd07692 Ig_CD3_epsilon Immunog 60.7 11 0.00025 22.5 2.7 20 12-32 37-56 (65)
182 cd05884 Ig2_Necl-3 Second immu 60.3 15 0.00032 22.2 3.2 25 10-34 46-70 (83)
183 smart00407 IGc1 Immunoglobulin 56.1 25 0.00055 20.4 3.7 23 10-32 48-70 (75)
184 PF05790 C2-set: Immunoglobuli 55.7 45 0.00098 20.3 5.0 33 12-44 45-78 (80)
185 PHA03189 UL14 tegument protein 55.4 27 0.00059 27.2 4.5 36 10-46 134-169 (348)
186 cd05719 Ig2_PVR_like Second im 54.5 35 0.00076 21.2 4.3 26 10-35 59-84 (95)
187 KOG4228|consensus 51.5 19 0.0004 32.3 3.4 50 24-74 1-50 (1087)
188 PHA03282 envelope glycoprotein 51.1 16 0.00035 30.0 2.8 30 7-36 330-360 (540)
189 KOG3515|consensus 50.6 13 0.00027 32.0 2.2 34 14-47 462-495 (741)
190 PHA02914 Immunoglobulin-like d 50.3 61 0.0013 26.4 5.9 25 8-32 79-103 (500)
191 cd07698 IgC_MHC_I_alpha3 Class 47.1 61 0.0013 19.6 4.5 20 14-33 64-83 (93)
192 cd07703 Ig2_Nectin-2_like Seco 45.2 50 0.0011 20.6 4.0 25 10-34 59-83 (95)
193 PHA03270 envelope glycoprotein 44.5 1.5E+02 0.0033 24.2 7.3 64 11-75 183-262 (466)
194 PHA02914 Immunoglobulin-like d 43.4 14 0.00029 30.0 1.3 35 8-42 344-378 (500)
195 PHA03283 envelope glycoprotein 41.3 30 0.00066 28.6 3.0 28 6-33 311-339 (542)
196 PHA03286 envelope glycoprotein 40.1 37 0.00081 27.8 3.3 24 11-34 308-332 (492)
197 PHA03281 envelope glycoprotein 37.0 37 0.00081 28.5 2.9 28 5-32 470-498 (642)
198 PF02480 Herpes_gE: Alphaherpe 35.7 21 0.00045 28.7 1.3 26 6-31 265-290 (439)
199 PF00041 fn3: Fibronectin type 34.8 25 0.00054 19.9 1.3 24 61-84 12-37 (85)
200 PHA03281 envelope glycoprotein 33.1 2.1E+02 0.0047 24.2 6.6 39 8-46 296-335 (642)
201 PF01688 Herpes_gI: Alphaherpe 32.8 1.5E+02 0.0033 20.7 5.1 25 8-32 122-146 (161)
202 KOG3515|consensus 30.1 38 0.00083 29.2 2.0 72 11-83 655-727 (741)
203 KOG0196|consensus 28.6 2.3E+02 0.0051 25.3 6.4 79 8-87 396-483 (996)
204 PF13757 VIT_2: Vault protein 27.4 1.3E+02 0.0029 18.4 3.6 25 65-89 32-65 (78)
205 PF02480 Herpes_gE: Alphaherpe 25.6 23 0.0005 28.4 0.0 39 8-46 87-126 (439)
206 PF08205 C2-set_2: CD80-like C 23.4 1.6E+02 0.0035 17.0 3.9 25 10-34 61-85 (89)
207 PF07654 C1-set: Immunoglobuli 22.1 1.8E+02 0.0038 16.9 3.8 14 19-32 63-76 (83)
208 PHA03240 envelope glycoprotein 21.1 37 0.0008 25.3 0.3 29 8-36 103-131 (258)
No 1
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.22 E-value=4e-11 Score=74.97 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=40.2
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCCh
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPL 51 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p~ 51 (98)
..|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|.+.|.||
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~~P 88 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP 88 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCCCC
Confidence 679999999999999999999999999999999999999876
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.19 E-value=8e-11 Score=75.09 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCCh
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPL 51 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p~ 51 (98)
...+.|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|.+.|.||
T Consensus 53 ~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 53 ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCCCCC
Confidence 456789999999999999999999999999999999999999887
No 3
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.08 E-value=3.9e-10 Score=70.12 Aligned_cols=41 Identities=22% Similarity=0.205 Sum_probs=38.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
..+.|.|.++.+.|+|.|+|.|.|.+|.+.+++.|.|.++|
T Consensus 45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 45 TIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred eEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 34689999999999999999999999999999999999865
No 4
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.07 E-value=4.6e-10 Score=68.65 Aligned_cols=38 Identities=39% Similarity=0.556 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.|.+.|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 38 ~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 38 SGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 46678999999999999999999999999999999875
No 5
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.03 E-value=3.3e-10 Score=71.22 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
...|.|.|++..|+|+|+|.|.|.++..++++.|.|.++|
T Consensus 46 ~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 46 AGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred CCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 3479999999999999999999999999999999999876
No 6
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.03 E-value=5.1e-10 Score=68.88 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=38.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
..+.|.|.++...|+|.|+|.|.|.+|.+.+++.|.|.++|
T Consensus 45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 45 SNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred ccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 45689999999999999999999999999999999999865
No 7
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.99 E-value=1.5e-09 Score=66.28 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
|...|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 39 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 39 GYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 5557999999999999999999999999999999875
No 8
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.98 E-value=2.2e-09 Score=65.10 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+.+.|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 38 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 38 CGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 46668999999999999999999999999999998875
No 9
>KOG3513|consensus
Probab=98.97 E-value=6.7e-10 Score=94.37 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=68.1
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCChhhhhhhhhhhheeeeeEEECCCCC--ccceEEEec
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEKTAYSNGSQS--IVSEYSGAI 84 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p~~~~~e~~~~~~~~~~~~~~~g~~~--~~~~f~~~~ 84 (98)
+.|.|.|++..|+|.|+|.|.....++++.+.|.|.++|-||.+++ ..+.+..+.+++|.+|.+| ||..|.|+.
T Consensus 577 g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~-~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~ 652 (1051)
T KOG3513|consen 577 GRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVH-VDDISDTTARLSWSPGSDNNSPIEKYTIQF 652 (1051)
T ss_pred cceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCcee-EeeeccceEEEEeecCCCCCCCceEEeEEe
Confidence 5699999999999999999999999999999999999999998877 5667889999999999999 999999874
No 10
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.95 E-value=3.3e-09 Score=63.47 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=35.2
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..+.+.|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 36 ~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 36 TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 345778999999999999999999999999999988865
No 11
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.89 E-value=2.3e-09 Score=66.97 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=33.8
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V 89 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTV 89 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcccCCEEEEe
Confidence 357999999999999999999999999999999987
No 12
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.87 E-value=8.2e-09 Score=64.24 Aligned_cols=37 Identities=30% Similarity=0.466 Sum_probs=34.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+.+.|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 50 ~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 50 DLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred CeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 4678999999999999999999999999999988875
No 13
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.87 E-value=5.8e-09 Score=65.88 Aligned_cols=38 Identities=24% Similarity=0.486 Sum_probs=34.4
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+...|.|.++.++|+|.|+|.|.|.+|.+..++.|.|
T Consensus 61 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 61 HGESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred CCeeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence 35678999999999999999999999999999888864
No 14
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.86 E-value=4.1e-09 Score=63.89 Aligned_cols=36 Identities=36% Similarity=0.433 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+..|.|.++..+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 38 ~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 38 DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 347999999999999999999999999999999875
No 15
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.85 E-value=5.2e-09 Score=62.56 Aligned_cols=38 Identities=34% Similarity=0.497 Sum_probs=34.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
....|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|+
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 34589999999999999999999999999999988874
No 16
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.84 E-value=5.3e-09 Score=61.85 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=33.1
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 34 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 34 DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 447999999999999999999999999999988875
No 17
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.82 E-value=1.4e-08 Score=63.19 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+.+.|.|.++..+|+|.|+|.|.|.+|.+..++.|.|
T Consensus 59 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 59 ARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred ccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence 35678999999999999999999999999999988865
No 18
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.82 E-value=1e-08 Score=63.70 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=36.5
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
..|.|.++..+|+|.|+|.|.|.+|.+.+.+.|.|.+..
T Consensus 47 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 85 (90)
T cd05726 47 GDLTITNVQRSDVGYYICQTLNVAGSILTKAYLEVTDVI 85 (90)
T ss_pred CeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEEEeecc
Confidence 469999999999999999999999999999999998754
No 19
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.80 E-value=7.7e-09 Score=64.38 Aligned_cols=35 Identities=29% Similarity=0.452 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 57999999999999999999999999999999987
No 20
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.80 E-value=1.3e-08 Score=61.09 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++.++|+|.|+|.|.|..|.+.+.+.|.|
T Consensus 40 ~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 40 DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999999999999999999999999999999887
No 21
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.80 E-value=1.6e-08 Score=64.38 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCC-CceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEF-GEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~s~~L~V 44 (98)
..+.|.|.++.++|+|.|+|.|.|.+ |.+.+++.|.|
T Consensus 58 ~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 58 YSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred CceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 34689999999999999999999997 99999998876
No 22
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.79 E-value=2.2e-08 Score=63.05 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence 368999999999999999999999999999998875
No 23
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.78 E-value=8.4e-09 Score=61.94 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 39 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 39 SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 347999999999999999999999999999998875
No 24
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.77 E-value=1.7e-08 Score=60.87 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=33.5
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|+|.|.|..|.+.+.+.|.|
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 357999999999999999999999999999999887
No 25
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.77 E-value=1.7e-08 Score=60.84 Aligned_cols=36 Identities=36% Similarity=0.379 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+.|.|.++.++|+|.|.|.|.|.+|.+.+.+.|.|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence 357999999999999999999999999999988875
No 26
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.76 E-value=2.5e-08 Score=61.64 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 43 (98)
..+.|.|.++..+|+|.|+|+|.|.+|.+.++..|.
T Consensus 44 ~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 44 YHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred cEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 456799999999999999999999999999887765
No 27
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.74 E-value=1.6e-08 Score=59.53 Aligned_cols=37 Identities=38% Similarity=0.638 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
...|.|.++..+|+|.|+|.|.|..|...+++.|.|.
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 71 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE 71 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence 3579999999999999999999999999999888773
No 28
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.73 E-value=1.8e-08 Score=60.26 Aligned_cols=35 Identities=37% Similarity=0.495 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 39 ~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 39 GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 47999999999999999999999999999998875
No 29
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.73 E-value=3.3e-08 Score=61.32 Aligned_cols=36 Identities=31% Similarity=0.299 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 43 (98)
..+.|.|.++..+|+|.|+|+|.|.+|++..+..+.
T Consensus 42 ~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 42 YHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 456899999999999999999999999998877654
No 30
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.73 E-value=3.9e-08 Score=59.91 Aligned_cols=37 Identities=30% Similarity=0.646 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+...|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 49 ~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 49 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 4567999999999999999999999999999988875
No 31
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.73 E-value=2.3e-08 Score=59.64 Aligned_cols=36 Identities=25% Similarity=0.532 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++..+|+|.|+|.|.|..|.+.+.+.|.|
T Consensus 40 ~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 40 GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 457999999999999999999999999999999887
No 32
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.73 E-value=2.6e-08 Score=62.02 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=33.6
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
..|.|.++.++|+|.|+|.|.|.+|.+.+.+.|.|+
T Consensus 53 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 88 (88)
T cd05851 53 AVLKIFNIQPEDEGTYECEAENIKGKDKHQARVYVQ 88 (88)
T ss_pred CEEEECcCChhhCEEEEEEEEcCCCceEEEEEEEEC
Confidence 479999999999999999999999999999998874
No 33
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.73 E-value=2.6e-08 Score=59.53 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=31.7
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 38 ~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 38 NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 5889999999999999999999999999998875
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.72 E-value=2.6e-08 Score=59.83 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
....|.|.++..+|+|.|+|.|.|..|....+..|.+
T Consensus 29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l 65 (67)
T cd05863 29 SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL 65 (67)
T ss_pred CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence 3458999999999999999999999998888777765
No 35
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.71 E-value=3.3e-08 Score=61.74 Aligned_cols=37 Identities=22% Similarity=0.441 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+...|.|.++..+|+|.|+|.|.|.+|.+.+.+.|.|
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 56 KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred CEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 4568999999999999999999999999999888765
No 36
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.71 E-value=2.6e-08 Score=59.10 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 42 (98)
...|.|.++..+|+|.|+|.|.|.+|.+.+++.|
T Consensus 35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 35 EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 3479999999999999999999999999988776
No 37
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.71 E-value=3.2e-08 Score=61.02 Aligned_cols=38 Identities=32% Similarity=0.310 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
....|.|.++..+|+|.|+|.|.|..|.+.+++.|.|.
T Consensus 51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 88 (88)
T cd04968 51 SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIYVQ 88 (88)
T ss_pred eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEEEC
Confidence 34689999999999999999999999999999998873
No 38
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.70 E-value=3.9e-08 Score=63.27 Aligned_cols=37 Identities=16% Similarity=0.115 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
...|.|..+.++|+|.|+|.|.|..|.+..++.|.|.
T Consensus 64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~L~V~ 100 (101)
T cd04975 64 VSELKLVRLKESEAGTYTFLASNSDASKSLTFELYVN 100 (101)
T ss_pred EEEEEEeecCHhhCeeEEEEEECCCccEEEEEEEEEE
Confidence 4679999999999999999999999999999999875
No 39
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.70 E-value=5.5e-08 Score=60.66 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
...|.|.++..+|.|.|+|.|.|.+|.+.+++.|.|..
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 57 GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 34699999999999999999999999999999998853
No 40
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.70 E-value=4.7e-08 Score=58.63 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+...|.|.++.++|+|.|+|.|.|..|.+.+++.|.|
T Consensus 45 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 45 KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred CceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 34578999999999999999999999999988877764
No 41
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.70 E-value=5.3e-08 Score=58.41 Aligned_cols=38 Identities=32% Similarity=0.343 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
...|.|.++..+|.|.|+|.|.|..|.+.+++.|.|++
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 34799999999999999999999999999999998863
No 42
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.69 E-value=5e-08 Score=63.20 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=36.4
Q ss_pred eEEEEEcCCC-CCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 9 NVGLVIDSIG-PGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 9 ~~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
...|.|.++. .+|.|.|+|.|.|.+|.+..++.|.|.+.|
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 3579999997 699999999999999999999999998776
No 43
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.68 E-value=5.8e-08 Score=57.65 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 41 (98)
.....|.|.++.++|.|.|+|.|.|.+|.+..++.
T Consensus 40 ~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 40 KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 34678999999999999999999999999887764
No 44
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.67 E-value=6.4e-08 Score=59.28 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
....|.|.++.++|+|.|+|.|.|..|...+++.|.|
T Consensus 47 ~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 47 LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred EEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 4568999999999999999999999999999988875
No 45
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.67 E-value=3.5e-08 Score=58.87 Aligned_cols=35 Identities=34% Similarity=0.358 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++..+|.|.|+|.|.|..|.+.+++.|.|
T Consensus 40 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 40 GTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 47999999999999999999999999999888865
No 46
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.66 E-value=4.9e-08 Score=59.63 Aligned_cols=39 Identities=36% Similarity=0.592 Sum_probs=36.2
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..+.+.|.|.++..+|+|.|+|.|.|..|.+.+++.|.|
T Consensus 52 ~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 52 DGGSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLTV 90 (90)
T ss_dssp ETTEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred ccceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEEC
Confidence 347899999999999999999999999999999999876
No 47
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.66 E-value=4e-08 Score=63.10 Aligned_cols=37 Identities=24% Similarity=0.158 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
.+.|.|.++..+|+|.|+|.|.|..|.+++++.|.|.
T Consensus 64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 64 VSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred ccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 3689999999999999999999999999999998875
No 48
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.65 E-value=6.1e-08 Score=58.75 Aligned_cols=35 Identities=20% Similarity=0.481 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 41 ~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 41 DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 37899999999999999999999999999999987
No 49
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.65 E-value=5e-08 Score=58.51 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|+|.|.|..|....+..+.+
T Consensus 34 ~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~ 69 (71)
T cd04976 34 GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL 69 (71)
T ss_pred CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence 457999999999999999999999998887777665
No 50
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.64 E-value=7e-08 Score=58.56 Aligned_cols=36 Identities=36% Similarity=0.672 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|.|.|.|.+|.+.+++.+.+
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 458999999999999999999999999865544443
No 51
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.63 E-value=4.9e-08 Score=58.90 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=30.8
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++.++|+|.|+|.|.|.+|.+....++.+
T Consensus 34 ~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 34 VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 47999999999999999999999998877666554
No 52
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.63 E-value=1.5e-07 Score=58.44 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
....|.|.++..+|.|.|+|.|.|..|.+.+++.|.|
T Consensus 54 ~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 54 DIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred CEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 4568999999999999999999999999999988864
No 53
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.63 E-value=7.8e-08 Score=58.30 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+...|.|.++..+|+|.|+|.|.|..|...+.+.+.+
T Consensus 39 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 39 GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 45678999999999999999999999999987776554
No 54
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.61 E-value=1.4e-07 Score=58.72 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=32.5
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 42 (98)
...+.|.|.++..+|+|.|+|.|.|.+|.+.++..|
T Consensus 56 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 91 (92)
T cd05747 56 EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL 91 (92)
T ss_pred CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence 346799999999999999999999999999887766
No 55
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.61 E-value=1.2e-07 Score=57.01 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 41 (98)
....|.|.++.++|+|.|+|.|.|..|.+.+++.
T Consensus 42 ~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 42 KSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred cEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 4578999999999999999999999999887764
No 56
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.60 E-value=1.4e-07 Score=59.78 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceE-EEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAI-CAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L~V 44 (98)
....|.|.++..+|+|.|+|.|.|..|... .+..|.+
T Consensus 54 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 54 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred CeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 456899999999999999999999999874 4555543
No 57
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.58 E-value=1.5e-07 Score=59.01 Aligned_cols=36 Identities=22% Similarity=0.457 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++.++|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 57 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 57 YASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 458999999999999999999999999999888765
No 58
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.56 E-value=1.2e-07 Score=57.41 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCce-EEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEA-ICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V 44 (98)
...|.|.++..+|+|.|+|.|.|..|.+ +..+.|.|
T Consensus 43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4689999999999999999999999987 45555543
No 59
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.56 E-value=2e-07 Score=58.47 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCc-eEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGE-AICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~-~~~s~~L~V 44 (98)
+...|.|.++.++|+|.|+|.|.|.+|. ..+++.|.|
T Consensus 55 ~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 55 VRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred CEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 4568999999999999999999999764 566666653
No 60
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.53 E-value=2e-07 Score=56.07 Aligned_cols=37 Identities=24% Similarity=0.401 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCce-EEEEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEA-ICAVFIQPE 45 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V~ 45 (98)
...|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 37 ~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 37 SGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4479999999999999999999999985 677777763
No 61
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.52 E-value=1.6e-07 Score=57.86 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=32.3
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++..+|+|.|+|.|.|.+|.+.+++.|.|
T Consensus 51 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 51 GDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 37999999999999999999999999999988865
No 62
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.47 E-value=3e-07 Score=57.18 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
....|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus 48 ~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V~ 85 (86)
T cd05862 48 LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85 (86)
T ss_pred eeeEEEEecCCcccCEEEEEEEeecceEecccEEEEEe
Confidence 46689999999999999999999999999999988875
No 63
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.46 E-value=3.4e-07 Score=55.76 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.|.|.++.++|+|.|+|.|.|..|.+...+.|.|
T Consensus 46 ~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 46 EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 6999999999999999999999999888777654
No 64
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.42 E-value=5.2e-07 Score=57.13 Aligned_cols=35 Identities=23% Similarity=0.171 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|.++.++|+|.|+|.+.|..|.+..++.|.|
T Consensus 60 ~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~~L~v 94 (94)
T cd05756 60 DLLWFLPAALEDSGLYTCVVRNSTYCMKVSISLTV 94 (94)
T ss_pred CeEEEccCCcccCeEEEEEEcCCCccEEEEEEEEC
Confidence 47999999999999999999999999999888865
No 65
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.42 E-value=6.5e-07 Score=56.27 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEE-EEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAIC-AVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V 44 (98)
...|.|.++..+|+|.|.|.|.|.+|.... .+.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 54 NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 347999999999999999999999998654 555655
No 66
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.40 E-value=1.1e-06 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCC--ceEEEEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFG--EAICAVFIQPE 45 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G--~~~~s~~L~V~ 45 (98)
...|.|.++.++|+|.|+|.|.|..+ ....+..|+|-
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 67899999999999999999999887 56666666663
No 67
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.37 E-value=5.8e-07 Score=54.56 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceE-EEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAI-CAVFIQ 43 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L~ 43 (98)
...|.|.++.++|+|.|+|.|.|..|... ..+.|.
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEE
Confidence 34799999999999999999999999875 455544
No 68
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.35 E-value=9e-07 Score=52.89 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 43 (98)
+...|.|.++ .|+|.|+|.|.|.+|.+.+++.|+
T Consensus 36 ~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 36 GRNVLELTNI--YESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEEC
Confidence 3457999997 489999999999999999888763
No 69
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.34 E-value=1.1e-06 Score=55.34 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCC-CeeEEEEEeCCCCceEEEEEE
Q psy2158 10 VGLVIDSIGPGD-EGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 10 ~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~s~~L 42 (98)
..|.|.++..+| .|.|+|.|.|.+|.+.+++.|
T Consensus 64 s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 64 STLTISNTQESDFQTSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEECCccccccceeEEEEEEcCCCcccEEEEe
Confidence 479999999955 899999999999999888765
No 70
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.33 E-value=1.6e-06 Score=55.13 Aligned_cols=42 Identities=24% Similarity=0.404 Sum_probs=38.2
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
..+..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.++
T Consensus 64 ~~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~~~ 105 (106)
T cd05714 64 DPGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVRGV 105 (106)
T ss_pred CCCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEEEE
Confidence 458899999999999999999999999898899999998874
No 71
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.30 E-value=2.5e-06 Score=51.15 Aligned_cols=37 Identities=27% Similarity=0.567 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
....|.|.++.++|.|.|.|.+.|..|.+..+..|.|
T Consensus 49 ~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 49 KKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred cEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 3457999999999999999999999999888877764
No 72
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.27 E-value=1.5e-06 Score=53.20 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 42 (98)
...|.|.++.++|+|.|.|.|.|..|...+++.|
T Consensus 51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 51 NGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred CCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 4579999999999999999999999999998876
No 73
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.24 E-value=3.5e-06 Score=52.88 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..+..+|.|.++..+|+|.|.|.+.|.-+.......|.|
T Consensus 61 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 61 AEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 357789999999999999999999998887777777765
No 74
>KOG3513|consensus
Probab=98.24 E-value=2.9e-06 Score=72.77 Aligned_cols=40 Identities=28% Similarity=0.421 Sum_probs=37.7
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecC
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVN 48 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p 48 (98)
+++|.|.|++.+|+|.|+|+|.|.+|.+..++.|.|.+++
T Consensus 478 dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 478 DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDAT 517 (1051)
T ss_pred CCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCc
Confidence 4589999999999999999999999999999999999876
No 75
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.23 E-value=2.8e-06 Score=53.73 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=30.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+...|.|.++..+|+|.|+|.|.|.+|.....+...+
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 3468999999999999999999999998776555443
No 76
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.17 E-value=6.1e-06 Score=52.35 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=37.0
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
.+..+|.|.++..+|+|.|.|.+.+..|.......|.|.++
T Consensus 65 ~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~~~ 105 (106)
T cd05877 65 DLDASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLRGV 105 (106)
T ss_pred CCcEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEEEE
Confidence 45678999999999999999999999999999999988764
No 77
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.15 E-value=6.3e-06 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCCCCC-CeeEEEEEeCCCCceEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGD-EGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D-~G~YtC~A~N~~G~~~~s~~L 42 (98)
.....|.|.++...| .|.|.|.|.|.+|.+.....|
T Consensus 61 g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 61 GVLSTLTINNIMEADFQTHYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred CcEEEEEECCCccccCCcEEEEEEEeCCccceEEEEe
Confidence 366789999998877 799999999999999887765
No 78
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.13 E-value=6e-06 Score=50.74 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=24.0
Q ss_pred CCCCCCeeEEEEEeCCCCc-eEEEEEEEE
Q psy2158 17 IGPGDEGEYTCCARNEFGE-AICAVFIQP 44 (98)
Q Consensus 17 v~~~D~G~YtC~A~N~~G~-~~~s~~L~V 44 (98)
+..+|+|.|+|.|.|.+|. .+..+.|.|
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEe
Confidence 4799999999999999999 567777765
No 79
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.13 E-value=8.6e-06 Score=52.33 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeC-CCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARN-EFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~s~~L~V 44 (98)
..++.+|.|.|++.+|.|.|+|...| ..|..++.+.|.|
T Consensus 59 ~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 59 SFEDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CCCcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 44778999999999999999999999 6888888888876
No 80
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.11 E-value=9.7e-06 Score=51.58 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeC-CCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARN-EFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~s~~L~V 44 (98)
..++.+|.|.|++.+|+|.|.|...| ..|...+.+.|.|
T Consensus 60 ~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 60 PIADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CCCceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 34678899999999999999999888 6777777777766
No 81
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.10 E-value=1e-05 Score=51.18 Aligned_cols=37 Identities=19% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+..+|.|.++.++|+|.|+|.+.+..+ ..+++.|.|
T Consensus 59 ~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~~~~~~l~v 95 (95)
T cd07701 59 WHELSISISDVSLSDEGQYTCSLFTMPV-KTSKAYLTV 95 (95)
T ss_pred CCcEEEEECcCCcccCEEEEEEeEeecC-ccEEEEEEC
Confidence 4567899999999999999999998543 477777764
No 82
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.09 E-value=7.1e-06 Score=51.61 Aligned_cols=37 Identities=27% Similarity=0.494 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCCCeeEEEEEe-CCCCceEEEEEEEEee
Q psy2158 10 VGLVIDSIGPGDEGEYTCCAR-NEFGEAICAVFIQPEC 46 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~s~~L~V~~ 46 (98)
..|.|.++.++|+|.|+|.|. |.+|.+.+.+.|.|..
T Consensus 53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l~v~~ 90 (91)
T cd05871 53 RGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90 (91)
T ss_pred CeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEEEEec
Confidence 469999999999999999997 6888888888888764
No 83
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.08 E-value=6.9e-06 Score=54.69 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=35.8
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCC
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV 49 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~ 49 (98)
+|.|.+++..|+|.|.|.+.|..|.....+.|.|..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~ 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPR 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCc
Confidence 699999999999999999999999999999999987664
No 84
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.06 E-value=7.4e-06 Score=49.52 Aligned_cols=31 Identities=48% Similarity=0.746 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCC----CCCeeEEEEEeCCCCceEE
Q psy2158 8 GNVGLVIDSIGP----GDEGEYTCCARNEFGEAIC 38 (98)
Q Consensus 8 g~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~ 38 (98)
....|.|.++.. +|+|.|+|.|.|.+|.+.+
T Consensus 37 ~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 37 DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 345788888754 7899999999999998764
No 85
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.05 E-value=1.5e-05 Score=50.66 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+...|.|.|+..+|+|.|+|.+.. .....+.+.|.|
T Consensus 60 ~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~v 95 (95)
T cd05882 60 TELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVTV 95 (95)
T ss_pred ceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEEC
Confidence 468999999999999999999888 334455555543
No 86
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.04 E-value=8.2e-06 Score=51.31 Aligned_cols=29 Identities=31% Similarity=0.579 Sum_probs=25.1
Q ss_pred EEEEEcCCC-CCCCeeEEEEEeCCCCceEE
Q psy2158 10 VGLVIDSIG-PGDEGEYTCCARNEFGEAIC 38 (98)
Q Consensus 10 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~ 38 (98)
..|.|.++. ++|+|.|+|.|.|.+|.+.+
T Consensus 58 g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S 87 (94)
T cd05848 58 GNLIISNPSEVKDSGRYQCLATNSIGSILS 87 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence 368898885 69999999999999998854
No 87
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.04 E-value=1.4e-05 Score=52.50 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=37.5
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
..++.+|.|.|++.+|+|.|.|...+..+.......|.|.++
T Consensus 70 ~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~gv 111 (112)
T cd05900 70 IPSDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVKGI 111 (112)
T ss_pred CCCCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEEee
Confidence 458889999999999999999999998888888888888764
No 88
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.02 E-value=1.4e-05 Score=48.54 Aligned_cols=31 Identities=42% Similarity=0.616 Sum_probs=24.0
Q ss_pred eEEEEEcCCCC----CCCeeEEEEEeCCCCceEEE
Q psy2158 9 NVGLVIDSIGP----GDEGEYTCCARNEFGEAICA 39 (98)
Q Consensus 9 ~~~L~I~~v~~----~D~G~YtC~A~N~~G~~~~s 39 (98)
...|.|..+.. .|.|.|+|.|.|.+|.+.+.
T Consensus 38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 38 TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 34667766654 37899999999999987653
No 89
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.01 E-value=2e-05 Score=51.12 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=36.1
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
..+..+|.|.|++.+|+|.|.|......+.......|.|.++
T Consensus 68 ~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g~ 109 (110)
T cd05878 68 NRGDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTGV 109 (110)
T ss_pred CCCcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEEE
Confidence 457789999999999999999999887777788888888763
No 90
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.01 E-value=2.3e-05 Score=48.87 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+...|.|.++..+|+|.|+|.+.+... ..+.+.|.|
T Consensus 60 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v 95 (95)
T cd05717 60 NELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV 95 (95)
T ss_pred CeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence 557899999999999999999998753 466666654
No 91
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.00 E-value=2.2e-05 Score=52.25 Aligned_cols=43 Identities=21% Similarity=0.350 Sum_probs=38.7
Q ss_pred cCCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 5 ~~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
...|+.+|.|.+++.+|+|.|.|...+.......+..|.|.++
T Consensus 74 ~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~Gv 116 (117)
T cd05901 74 EDQGDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSGV 116 (117)
T ss_pred CcCCceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 3458899999999999999999999999999999999998864
No 92
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.00 E-value=1.6e-05 Score=49.91 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=26.6
Q ss_pred EEEEEcCCC-CCCCeeEEEEEeCCCCceEE-EEEE
Q psy2158 10 VGLVIDSIG-PGDEGEYTCCARNEFGEAIC-AVFI 42 (98)
Q Consensus 10 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-s~~L 42 (98)
..|.|.++. ..|+|.|.|.|.|.+|.+.+ .+.|
T Consensus 58 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 58 GNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 368898865 69999999999999998864 4444
No 93
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=97.98 E-value=1.9e-05 Score=49.76 Aligned_cols=33 Identities=27% Similarity=0.478 Sum_probs=27.1
Q ss_pred EEEEEcCCC-CCCCeeEEEEEeCCCCceEE-EEEE
Q psy2158 10 VGLVIDSIG-PGDEGEYTCCARNEFGEAIC-AVFI 42 (98)
Q Consensus 10 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~-s~~L 42 (98)
..|.|.++. .+|+|.|.|.|.|.+|.+.+ .+.|
T Consensus 57 g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 57 GNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 478999985 68999999999999998854 4443
No 94
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.98 E-value=3.4e-05 Score=47.91 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeC-CCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARN-EFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~s~~L~V 44 (98)
+..+|.|.++..+|+|.|.|.+.+ ..|.......|.|
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 60 EDATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred CceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 678999999999999999998765 6788888887776
No 95
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=97.97 E-value=1.5e-05 Score=49.73 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=26.8
Q ss_pred EEEEcCC-----CCCCCeeEEEEEeCC-CCce-EEEEEEEE
Q psy2158 11 GLVIDSI-----GPGDEGEYTCCARNE-FGEA-ICAVFIQP 44 (98)
Q Consensus 11 ~L~I~~v-----~~~D~G~YtC~A~N~-~G~~-~~s~~L~V 44 (98)
.|.|.++ .+.|.|.|.|.|.|. .|.+ +..+.|.|
T Consensus 55 ~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 55 SLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred eEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 4667666 689999999999999 9988 44666553
No 96
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=97.95 E-value=3.1e-05 Score=47.02 Aligned_cols=31 Identities=52% Similarity=0.829 Sum_probs=24.6
Q ss_pred eEEEEEcCCC---C-CCCeeEEEEEeCCCCceEEE
Q psy2158 9 NVGLVIDSIG---P-GDEGEYTCCARNEFGEAICA 39 (98)
Q Consensus 9 ~~~L~I~~v~---~-~D~G~YtC~A~N~~G~~~~s 39 (98)
...|.|.++. + +|+|.|+|.|.|.+|.+.+.
T Consensus 38 ~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 38 SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 4578888764 3 36999999999999987654
No 97
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=97.92 E-value=2.1e-05 Score=47.78 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAIC 38 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~ 38 (98)
.+|.|.++..+|+|.|+|.|.|.......
T Consensus 36 ~~L~I~~v~~~D~G~YtC~a~~~~~~~~~ 64 (72)
T cd07702 36 YSLVIKDVTEEDAGIYTILLGIKQYNLFK 64 (72)
T ss_pred CEEEECcCCHHHCEEEEEEEEccccceEe
Confidence 37999999999999999999998554443
No 98
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.91 E-value=3e-05 Score=51.08 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.5
Q ss_pred cCCCeEEEEEcCCCCCCCeeEEEEEeCCCCceE
Q psy2158 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37 (98)
Q Consensus 5 ~~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 37 (98)
+..++.+|.|.|++.+|.|.|+|...|..+...
T Consensus 75 ~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 75 PSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred CCcCeeEEEEccCCcccCEEEEEEEEcCCCcCC
Confidence 456888999999999999999999999877443
No 99
>KOG4194|consensus
Probab=97.90 E-value=2.3e-05 Score=64.79 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=37.2
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCC
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p 50 (98)
.+.|.|++++|.|.|+|.|.|..|..++.+.|.|.+.|.+
T Consensus 670 ~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f 709 (873)
T KOG4194|consen 670 VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSF 709 (873)
T ss_pred EEEEecccccccceeEEeeeccccceeeceEEEEecCCcc
Confidence 6789999999999999999999999999999999987753
No 100
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=97.89 E-value=1.9e-05 Score=48.92 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.9
Q ss_pred EEEEEcCCC-CCCCeeEEEEEeCCCCceEE
Q psy2158 10 VGLVIDSIG-PGDEGEYTCCARNEFGEAIC 38 (98)
Q Consensus 10 ~~L~I~~v~-~~D~G~YtC~A~N~~G~~~~ 38 (98)
..|.|.++. .+|+|.|+|.|.|.+|.+..
T Consensus 58 ~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 58 GNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 478898887 49999999999999997654
No 101
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.89 E-value=3.4e-05 Score=50.49 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=36.5
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
..|+.+|.|.|++++|+|.|.|..............|.|.++
T Consensus 68 ~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~gv 109 (110)
T cd05902 68 NRYNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTGV 109 (110)
T ss_pred CCceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEEE
Confidence 458899999999999999999999887777788888888763
No 102
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.85 E-value=6e-05 Score=48.27 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=34.9
Q ss_pred cCCCeEEEEEcCCCCCCCeeEEEE-EeCCCCceEEEEEEEE
Q psy2158 5 PQSGNVGLVIDSIGPGDEGEYTCC-ARNEFGEAICAVFIQP 44 (98)
Q Consensus 5 ~~~g~~~L~I~~v~~~D~G~YtC~-A~N~~G~~~~s~~L~V 44 (98)
+..++.+|.|.|++.+|+|.|.|. ...+.|...++..|.|
T Consensus 55 ~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 55 YSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 445778999999999999999997 5667999999999887
No 103
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.82 E-value=7.1e-05 Score=43.28 Aligned_cols=36 Identities=36% Similarity=0.592 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++...|+|.|.|.+.|..|.....+.|.|
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 578999999999999999999999998887776665
No 104
>smart00409 IG Immunoglobulin.
Probab=97.82 E-value=7.1e-05 Score=43.28 Aligned_cols=36 Identities=36% Similarity=0.592 Sum_probs=32.0
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
...|.|.++...|+|.|.|.+.|..|.....+.|.|
T Consensus 50 ~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 50 NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 578999999999999999999999998887776665
No 105
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.80 E-value=2.9e-05 Score=42.84 Aligned_cols=27 Identities=44% Similarity=0.714 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
....|.|.++...|+|.|+|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 455899999999999999999999876
No 106
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=97.79 E-value=4.8e-05 Score=46.80 Aligned_cols=36 Identities=31% Similarity=0.586 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCeeEEEEEeCC-CCceEEEEEEEEee
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNE-FGEAICAVFIQPEC 46 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~-~G~~~~s~~L~V~~ 46 (98)
.|.|.++.++|+|.|.|.|.|. .+...++..|.|.+
T Consensus 52 ~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 52 GLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred CEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence 5899999999999999999865 56667777777753
No 107
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=97.77 E-value=6.5e-05 Score=48.08 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 37 (98)
+...|.|.++.++|+|.|+|.|.|.+|...
T Consensus 53 ~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 53 GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 445799999999999999999999987553
No 108
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=97.72 E-value=6.2e-05 Score=54.82 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
...|.|.++..+|+|.|+|.|.|..|....++.|.|...
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~ 135 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSG 135 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecC
Confidence 358999999999999999999999999888888888543
No 109
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.72 E-value=7e-05 Score=48.82 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=27.2
Q ss_pred ecCCCeEEEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 4 ~~~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
+...++.+|.|.+++++|+|.|.|.+.|..+.
T Consensus 73 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 73 NIMRRDASILIWQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred CCcCCceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence 34457889999999999999999999987663
No 110
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.70 E-value=4.6e-05 Score=48.54 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 37 (98)
.|...|.|.++..+|+|.|.|.+.|..++..
T Consensus 62 ~g~~~L~I~~l~~sDsgtY~C~v~~~~~~~~ 92 (94)
T cd07690 62 QGSFPLIIKNLKIEDSDTYICEVEDKKEEVE 92 (94)
T ss_pred CCeEEEEECCCCHHHCEEEEEEECCccceEE
Confidence 4667899999999999999999999988654
No 111
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.68 E-value=9.8e-05 Score=47.81 Aligned_cols=33 Identities=27% Similarity=0.509 Sum_probs=27.5
Q ss_pred ecCCCeEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 4 ~~~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
++..++.+|.|.++.++|+|.|.|.+.|.-+.+
T Consensus 74 ~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~ 106 (116)
T cd05715 74 NPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIV 106 (116)
T ss_pred CCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCC
Confidence 344567899999999999999999999876643
No 112
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.64 E-value=9.9e-05 Score=56.00 Aligned_cols=42 Identities=21% Similarity=0.379 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEE----EEEEEEeecCCCh
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAIC----AVFIQPECVNVPL 51 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~----s~~L~V~~~p~p~ 51 (98)
..|.|.+++.+|.|.|+|.|.|..|.... .+.|.|.....||
T Consensus 177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp 222 (326)
T PHA02785 177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPP 222 (326)
T ss_pred CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCc
Confidence 57999999999999999999999987643 3446665443343
No 113
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.62 E-value=0.00015 Score=45.58 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEe-CCCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCAR-NEFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~-N~~G~~~~s~~L~V 44 (98)
..+..+|.|.|+..+|+|.|.|... ...|.....+.|.|
T Consensus 57 ~~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 57 GLNSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CCCccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 4577899999999999999999754 66888888888776
No 114
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.59 E-value=6.6e-05 Score=46.22 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~ 37 (98)
....|.|.++.++|+|.|+|.|.|..|...
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 345799999999999999999999998543
No 115
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.55 E-value=0.00031 Score=44.35 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCce-EEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEA-ICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L~V 44 (98)
.++.+|.|.+++.+|+|.|.|...+..|.. .....|.|
T Consensus 58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 58 QNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 356899999999999999999988887755 34444544
No 116
>PHA02785 IL-beta-binding protein; Provisional
Probab=97.54 E-value=0.00026 Score=53.71 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=33.2
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
.|.|.++..+|+|.|+|.|.|..|...+++.|.|...
T Consensus 83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~ 119 (326)
T PHA02785 83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV 119 (326)
T ss_pred eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec
Confidence 5889999999999999999999999888888888654
No 117
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=97.52 E-value=0.00018 Score=44.40 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEE-EEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAIC-AVFI 42 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L 42 (98)
..|.|.++ .|.|.|.|.|.|.+|...+ .+.|
T Consensus 49 s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 49 SVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 47889887 5789999999999997764 4433
No 118
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=97.51 E-value=0.0002 Score=46.41 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCC-CceEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEF-GEAICAVFIQ 43 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~-G~~~~s~~L~ 43 (98)
.+++|.|.+++..|+|.|+|.+.|.- ....+...|.
T Consensus 68 ~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 68 PNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred CCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence 34689999999999999999998876 4444555444
No 119
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.51 E-value=5.4e-05 Score=48.63 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
++.|.|.++..+|+|.|+|.|+|..+..
T Consensus 59 ~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 59 NGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCcEEEeecCHhhCceeEEEEEecccCC
Confidence 5689999999999999999999987655
No 120
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.44 E-value=0.00048 Score=44.76 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~ 45 (98)
..|.+..++.+|.|.|+|.|.|+.+.++.+..|.|.
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 579999999999999999999999999999998875
No 121
>KOG4222|consensus
Probab=97.44 E-value=7.1e-05 Score=64.85 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=60.4
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCC---------------hhhhhhhhhhhheeeeeEEECC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP---------------LYQQRMQQMQQHRSEKTAYSNG 72 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p---------------~~~~~e~~~~~~~~~~~~~~~g 72 (98)
....|+|.+....|.|.|+|+|.+..|+...++.|+|.+.... +.+.. ..+-..+++.++|.++
T Consensus 472 ~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~-v~~v~~~~v~LsW~~~ 550 (1281)
T KOG4222|consen 472 EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPG-VVNVSRTSVTLSWQPT 550 (1281)
T ss_pred eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCc-cccCCCceEEecccCC
Confidence 3467999999999999999999999999999999999865433 11111 2224577899999888
Q ss_pred CCC---ccceEEEecE
Q psy2158 73 SQS---IVSEYSGAIL 85 (98)
Q Consensus 73 ~~~---~~~~f~~~~~ 85 (98)
+.. |+.-|.++.|
T Consensus 551 s~sg~vP~s~yiieaf 566 (1281)
T KOG4222|consen 551 SPSGAVPASGYIIEAF 566 (1281)
T ss_pred CCCCccccchhHHHHh
Confidence 874 8888888766
No 122
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=97.41 E-value=0.00012 Score=44.78 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 43 (98)
...|.|.++ .+|+|.|+|.|.|. ..+..+.|.
T Consensus 46 ~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v~l~ 77 (78)
T cd05752 46 TNSYRIRAA-NNDSGEYRCQTQGS--SLSDPVHLE 77 (78)
T ss_pred CCeEEEeec-ccCCEEeEEECCCC--cCCCCEEEe
Confidence 347899999 99999999999986 333334443
No 123
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.41 E-value=0.00023 Score=44.91 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=25.9
Q ss_pred cCCCeEEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 5 ~~~g~~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
...+...|.|.+++.+|+|.|.|.+.+..+
T Consensus 65 ~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 65 KSRKSSSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred ccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 345889999999999999999999987643
No 124
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.39 E-value=0.00019 Score=41.31 Aligned_cols=25 Identities=44% Similarity=0.720 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
.....|.|.++..+|.|.|+|.|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3567899999999999999999987
No 125
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.37 E-value=0.00024 Score=44.30 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
+..+|.|.+++++|+|.|.|.+.+..+
T Consensus 65 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 65 SSFTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEECCCCHHHCEEEEEEEecCCC
Confidence 788999999999999999999998776
No 126
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.36 E-value=0.00029 Score=44.27 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEF 33 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~ 33 (98)
..|.|.|++.+|+|.|+|.|.+..
T Consensus 48 ~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 48 DGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcEEEeCCCHHHCEEEEEEEEecc
Confidence 369999999999999999998874
No 127
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=97.36 E-value=0.00052 Score=41.91 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCce-EEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEA-ICAVFI 42 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~-~~s~~L 42 (98)
.+|.|.+++++|+|.|.|...+..|.. .....|
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l 90 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFL 90 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEE
Confidence 789999999999999999988876543 334333
No 128
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=97.32 E-value=0.00045 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|.|..+..+|+|.|+|.+.|+-.....+..|.|
T Consensus 70 ~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 70 DSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred CEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence 46999999999999999999999877776666654
No 129
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.31 E-value=0.00041 Score=43.00 Aligned_cols=27 Identities=30% Similarity=0.630 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
..+..+|.|.|++++|+|.|.|.....
T Consensus 75 ~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 75 SQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp TTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred cCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 457889999999999999999987776
No 130
>KOG4221|consensus
Probab=97.24 E-value=0.0006 Score=59.65 Aligned_cols=84 Identities=15% Similarity=0.116 Sum_probs=53.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCC---Chhhhh--hhhh-------hhheeeeeEE-ECCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV---PLYQQR--MQQM-------QQHRSEKTAY-SNGSQ 74 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~---p~~~~~--e~~~-------~~~~~~~~~~-~~g~~ 74 (98)
|...|.|++++..|+|.|+|.|.|.-....+.+.|.|..+|- .|.++. |..+ .-+-.-+..| .+|+.
T Consensus 289 g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~ 368 (1381)
T KOG4221|consen 289 GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDR 368 (1381)
T ss_pred cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcc
Confidence 456799999999999999999999766667777777776653 122211 1111 1111124556 77777
Q ss_pred C-ccceEEEecEE-Eeeee
Q psy2158 75 S-IVSEYSGAILV-MKVLQ 91 (98)
Q Consensus 75 ~-~~~~f~~~~~~-~~~~~ 91 (98)
- |-.-||++.-- +|+|-
T Consensus 369 ~ipsdy~ki~~~~~lrIlg 387 (1381)
T KOG4221|consen 369 IIPSDYFKIVGGGNLRILG 387 (1381)
T ss_pred cCcccceEecCCCCcEEEE
Confidence 7 66667776544 55554
No 131
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.24 E-value=0.00028 Score=40.34 Aligned_cols=18 Identities=44% Similarity=0.953 Sum_probs=17.3
Q ss_pred EEEcCCCCCCCeeEEEEE
Q psy2158 12 LVIDSIGPGDEGEYTCCA 29 (98)
Q Consensus 12 L~I~~v~~~D~G~YtC~A 29 (98)
|.|.++.++|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 999999999999999986
No 132
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.20 E-value=0.0013 Score=42.00 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=28.1
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCC-CCceEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNE-FGEAICAVFI 42 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~-~G~~~~s~~L 42 (98)
.+.+|.|.|++.+|+|.|+|...+. .|...+...|
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 5679999999999999999986554 7776665543
No 133
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.17 E-value=0.00041 Score=40.53 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=26.1
Q ss_pred EEEcCCCCCCCeeEEEEEeCCCC-ceEEEEEEEE
Q psy2158 12 LVIDSIGPGDEGEYTCCARNEFG-EAICAVFIQP 44 (98)
Q Consensus 12 L~I~~v~~~D~G~YtC~A~N~~G-~~~~s~~L~V 44 (98)
|.|.++..+|.|.|+|.+.|..| ..+.++.|.|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 77899999999999999999654 4455555554
No 134
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.02 E-value=0.00054 Score=43.89 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCCCCe-eEEEEEeCCCCce
Q psy2158 8 GNVGLVIDSIGPGDEG-EYTCCARNEFGEA 36 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G-~YtC~A~N~~G~~ 36 (98)
.++.|.|.++...|.| .|.|.|.|.....
T Consensus 56 ~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 56 QNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 4578999999999999 8999999986544
No 135
>PHA02633 hypothetical protein; Provisional
Probab=96.99 E-value=0.0025 Score=38.15 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
....|-|.++..+|+|.|.|+.+|.--....+..|.|-.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 445789999999999999999999877777777777654
No 136
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.81 E-value=0.0028 Score=39.41 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=25.8
Q ss_pred ecCCCeEEEEEcCCCCCCCeeEEEEEeCCC
Q psy2158 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEF 33 (98)
Q Consensus 4 ~~~~g~~~L~I~~v~~~D~G~YtC~A~N~~ 33 (98)
++..+...|.|.++..+|+|.|.|.+.+..
T Consensus 58 ~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 58 DPDNGVFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred cCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence 455688999999999999999999877654
No 137
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.78 E-value=0.0011 Score=38.93 Aligned_cols=22 Identities=32% Similarity=0.669 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCCCCeeEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCC 28 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~ 28 (98)
.+...|.|.+++++|+|.|.|.
T Consensus 59 ~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 59 KNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CCEEEEEEcCCCHHHCEEEEEc
Confidence 6788999999999999999995
No 138
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=96.70 E-value=0.0025 Score=41.43 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.0
Q ss_pred ecCCCeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 4 ~~~~g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
++..++++|.|.++.++|+|.|.|.....
T Consensus 74 ~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 74 DLGKKNCSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred CCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence 55678899999999999999999987553
No 139
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.69 E-value=0.0078 Score=38.37 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
....+|.|.++..+|+|.|.|.+..
T Consensus 59 ~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 59 SNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CCEEEEEECcCCcccCEEEEEEEEc
Confidence 4567899999999999999998765
No 140
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=96.60 E-value=0.0041 Score=45.29 Aligned_cols=27 Identities=41% Similarity=0.501 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
+...|.|.++..+|+|.|+|.|....+
T Consensus 186 ~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 186 NNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 345899999999999999999999764
No 141
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.59 E-value=0.0028 Score=40.37 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
+...|.|.++.++|+|.|.|.+.+..|
T Consensus 70 ~~~~L~I~~~~~~Dsg~Y~Ca~~~~~~ 96 (110)
T cd05899 70 TRSSLTIKSAEPEDSAVYLCASSLGGG 96 (110)
T ss_pred CccEEEECCCChhhCEEEEEEeeCCCC
Confidence 568899999999999999999887543
No 142
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=96.57 E-value=0.0032 Score=39.05 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
....|.|.+++++|+|.|+|...|.
T Consensus 51 ~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 51 NKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred eeEEEEccCCChhHCEEEEEEEECC
Confidence 4567999999999999999999886
No 143
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.55 E-value=0.003 Score=39.96 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
.+...|.|.++.++|+|.|.|.+.+.
T Consensus 68 ~~~~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 68 GTDFTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred CCEEEEEECCCChHHCEEEEEEEeCC
Confidence 35678999999999999999998764
No 144
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.51 E-value=0.0044 Score=38.61 Aligned_cols=26 Identities=23% Similarity=0.458 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
.+...|.|.++.++|+|.|-|.+.+.
T Consensus 60 ~~~~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 60 GNTASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred CCEEEEEECCCChhhCEEEEEEEccC
Confidence 36778999999999999999987753
No 145
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.50 E-value=0.0083 Score=32.28 Aligned_cols=29 Identities=41% Similarity=0.684 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
.....|.|.++...|.|.|.|.+.+..+.
T Consensus 40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 40 SGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred eeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 46678999999999999999999887643
No 146
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.46 E-value=0.0035 Score=40.11 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
+....|.|.++.++|+|.|.|.+..
T Consensus 74 ~~~~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 74 KSTSTLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred CCEEEEEEEECCHHHCEEEEEEEec
Confidence 3678999999999999999998764
No 147
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.40 E-value=0.0038 Score=40.07 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=24.2
Q ss_pred ecCCCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 4 DPQSGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 4 ~~~~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
+...+...|.|.++.++|+|.|.|...+
T Consensus 66 ~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~ 93 (116)
T cd07706 66 QKAQKSISLTISALQLEDSAKYFCALST 93 (116)
T ss_pred eccCCEEEEEECCCCHHHCEEEEEEEEC
Confidence 3456788999999999999999998775
No 148
>PHA03376 BARF1; Provisional
Probab=96.26 E-value=0.012 Score=42.78 Aligned_cols=31 Identities=19% Similarity=0.318 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
++|+.+|.|.++.++|.|.|+|...-.....
T Consensus 83 ~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~ 113 (221)
T PHA03376 83 SANTFFLVVTAANISHDGNYLCRMKLGETEV 113 (221)
T ss_pred cCCeEEEEEEeeeecCCceEEEEEEcCCCce
Confidence 4599999999999999999999866554433
No 149
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.20 E-value=0.0062 Score=38.79 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
..+...|.|.++.++|+|.|.|...+
T Consensus 68 ~~~~~~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 68 DSSRYRLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred CCCEEEEEECCCCHHHCEEEEEeEcC
Confidence 34567899999999999999998753
No 150
>KOG4222|consensus
Probab=96.16 E-value=0.0035 Score=54.81 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=39.1
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV 49 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~ 49 (98)
..+.+|.|.++.+.|.|.|.|.|.|.+|...+.+.++|.++|.
T Consensus 275 ~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~ 317 (1281)
T KOG4222|consen 275 DDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPS 317 (1281)
T ss_pred eccccccccccCCCcccceeeeccccccccccccceEEecCcc
Confidence 3456899999999999999999999999999999999998763
No 151
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=96.15 E-value=0.013 Score=36.63 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEE
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~ 43 (98)
.|.|.+++++|+|.|.|.+. ..|-....+.+.
T Consensus 48 GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~ 79 (85)
T cd05872 48 GLLILVTSPEHSGTYRCYSE-EEGFQQLVASYS 79 (85)
T ss_pred CCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence 47899999999999999866 445444444433
No 152
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=96.04 E-value=0.018 Score=41.32 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEE-eCCCC-ceEEEEEEEEeec
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCA-RNEFG-EAICAVFIQPECV 47 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A-~N~~G-~~~~s~~L~V~~~ 47 (98)
.....|.|.++..+|+|.|+|.. .=+.| ....++.|.|.+.
T Consensus 82 ~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 82 FNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred CCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 35578999999999999999964 44467 7788888888753
No 153
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.83 E-value=0.021 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.181 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEE
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 42 (98)
..|.|.....+|.|.|+|.|.|..-.....+.+
T Consensus 46 s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 46 STLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred EEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 467888888889999999999986544444443
No 154
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.81 E-value=0.011 Score=37.66 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
.+...|.|.++.++|+|.|-|...+
T Consensus 66 ~~~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 66 SNSFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEcc
Confidence 4677899999999999999997654
No 155
>KOG4221|consensus
Probab=95.68 E-value=0.027 Score=49.76 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=56.6
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEe---ecCCChhh-hhhhhhhhheeeeeEEECCCCC----ccc
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE---CVNVPLYQ-QRMQQMQQHRSEKTAYSNGSQS----IVS 78 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~---~~p~p~~~-~~e~~~~~~~~~~~~~~~g~~~----~~~ 78 (98)
.....+.|.++.+.+.=.|.|+|.|+.|.-..++.+.|. +.|.+|.+ +. ..--..++++.+|.+.... .+.
T Consensus 571 ~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~-lev~sStsVrVsW~pP~~~t~ng~it 649 (1381)
T KOG4221|consen 571 NNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLS-LEVVSSTSVRVSWLPPPSETQNGQIT 649 (1381)
T ss_pred cCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceE-EEecCCCeEEEEccCCCcccccceEE
Confidence 355689999999999999999999999988887777764 56655544 65 2335677899999766665 555
Q ss_pred eEEE
Q psy2158 79 EYSG 82 (98)
Q Consensus 79 ~f~~ 82 (98)
-|||
T Consensus 650 gYkI 653 (1381)
T KOG4221|consen 650 GYKI 653 (1381)
T ss_pred EEEE
Confidence 5555
No 156
>KOG4194|consensus
Probab=95.62 E-value=0.016 Score=48.53 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEE-EEEEEEeecC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAIC-AVFIQPECVN 48 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~~p 48 (98)
..|++.||.-.|+|.|.|++.|.+|.+.+ .+.|+|...|
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~P 613 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAP 613 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccC
Confidence 46899999999999999999999998854 5667776554
No 157
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=95.56 E-value=0.033 Score=34.49 Aligned_cols=28 Identities=11% Similarity=-0.003 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
...|.|.-...+|.|.|+|.|.|..+..
T Consensus 42 ~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 42 SNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 3469999999999999999999998864
No 158
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=95.18 E-value=0.025 Score=36.80 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
.....|.|.++.++|+|.|-|.+..
T Consensus 73 ~~~~~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 73 KSTVYLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred CCEEEEEECCCCHHHCEEEEEEEEc
Confidence 4556899999999999999998765
No 159
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=93.50 E-value=0.16 Score=31.63 Aligned_cols=22 Identities=18% Similarity=0.616 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCCCeeEEEEEe
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCAR 30 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~ 30 (98)
...+.|.++.++|+|.|.|...
T Consensus 54 ~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 54 QASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred EEEEEecCCCcccCEEEEEEEE
Confidence 4468999999999999999864
No 160
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=90.77 E-value=0.13 Score=34.82 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
..|+.+|.+.....- .|+|+|.+.....+......|..
T Consensus 82 ~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 82 LKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY 119 (130)
T ss_dssp GGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred hCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence 457778888885555 99999999988887777777665
No 161
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=90.17 E-value=1.5 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=28.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
+...|.+..+...|+|..+|...-.--+..+...+.|.+
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl~ 87 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVLA 87 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEEe
Confidence 556899999999999999999875544444555555543
No 162
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=88.37 E-value=0.92 Score=29.87 Aligned_cols=36 Identities=33% Similarity=0.506 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
.+..|.|+.+.+.|+|.|.=...|.-|.. +.....|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV 104 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV 104 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence 55689999999999999999999999977 4444443
No 163
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=87.59 E-value=0.73 Score=27.80 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=18.7
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
.|.|......|.|.|+|.+.+....
T Consensus 63 ~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 63 QLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred EEEECHHHhCCCCCEEEEEEeCCCC
Confidence 4566555556999999999987553
No 164
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=87.57 E-value=0.71 Score=28.06 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
+-.|.+..+..+-.|.|.|.+.+
T Consensus 32 ~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 32 NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ccEEeccCcccCCCcceEecCcc
Confidence 45688888889999999998877
No 165
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=86.90 E-value=0.98 Score=29.96 Aligned_cols=27 Identities=11% Similarity=0.225 Sum_probs=23.3
Q ss_pred eecCCCeEEEEEcCCCCCCCeeEEEEE
Q psy2158 3 YDPQSGNVGLVIDSIGPGDEGEYTCCA 29 (98)
Q Consensus 3 ~~~~~g~~~L~I~~v~~~D~G~YtC~A 29 (98)
.|...+...|.|.++..+|.+.|-|.-
T Consensus 67 ~~~s~ntv~L~l~~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 67 GTLGNEQVNFTLQNLRANQTDIYFCKI 93 (115)
T ss_pred EeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence 456678899999999999999999953
No 166
>KOG4597|consensus
Probab=86.06 E-value=0.89 Score=37.09 Aligned_cols=38 Identities=32% Similarity=0.273 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V 44 (98)
+..+.|+|.|.-+.|+|-|+|.|+|..|...+.+.+.+
T Consensus 254 tstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv~c~s 291 (560)
T KOG4597|consen 254 TSTCQLVICNEWQADAGWYTCSARCGAGFLRRDVPCSS 291 (560)
T ss_pred eeeeeEEEcchhhcCCCceeeccccccceeeccceeee
Confidence 46778999999999999999999999998887777664
No 167
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=84.71 E-value=0.86 Score=34.41 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEF 33 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~ 33 (98)
..+.|.+.+...+++|.|+|..+-..
T Consensus 35 ~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 35 ETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred cCceEEeeccccccCCceEEEEEEEe
Confidence 44579999999999999999866543
No 168
>PHA03269 envelope glycoprotein C; Provisional
Probab=84.41 E-value=5.1 Score=32.94 Aligned_cols=79 Identities=13% Similarity=0.020 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeC-CCCceEEEEEEEEee--cCC----Chhhhhhhhh----------hhheeeeeEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARN-EFGEAICAVFIQPEC--VNV----PLYQQRMQQM----------QQHRSEKTAY 69 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N-~~G~~~~s~~L~V~~--~p~----p~~~~~e~~~----------~~~~~~~~~~ 69 (98)
++...|.|.++...++|.|+=...+ ..|.......+.|.- .|. |...++ +.. +=.+++++.|
T Consensus 286 p~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~-Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 286 TSDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLL-GNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred CCccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCcccc-CCCceEEEEeeeecCCCceEEEE
Confidence 3667899999999999999877543 334444444555443 231 112222 222 4567899999
Q ss_pred ECCCCCccceEEEecEE
Q psy2158 70 SNGSQSIVSEYSGAILV 86 (98)
Q Consensus 70 ~~g~~~~~~~f~~~~~~ 86 (98)
..+.......|..++|.
T Consensus 365 f~ng~~V~~~~it~t~~ 381 (566)
T PHA03269 365 TSNFGNIGKNFITDAIK 381 (566)
T ss_pred EeCCcccCcccccccee
Confidence 77766655577777665
No 169
>PHA02982 hypothetical protein; Provisional
Probab=81.24 E-value=2.2 Score=31.54 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEEeCCCCceE-EEEEEEE
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAI-CAVFIQP 44 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~-~s~~L~V 44 (98)
.++++|+|.++.+...|=|+|.|....|... |..-|.|
T Consensus 97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ccceeEEeccCCcccCCceEEEEecCCCchheeheeeeE
Confidence 4678999999999999999999999775443 3433444
No 170
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=80.51 E-value=4.6 Score=24.13 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=17.8
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
.|.+.-...++.+.|+|.+.|....
T Consensus 46 ~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 46 SLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEcchhhCCCEEEEEEeChhcC
Confidence 4555555556678999999998654
No 171
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=77.07 E-value=11 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.100 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEF 33 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~ 33 (98)
....|.|.--..+|...|+|.|.|..
T Consensus 42 ~~S~L~~~p~~eDdG~~~~C~a~~~~ 67 (82)
T cd05883 42 VTSQLMLKVTKEDDGVPVICLVDHPA 67 (82)
T ss_pred EEEEEEEECchhhCCCEEEEEEcCcc
Confidence 34568886666777788999999974
No 172
>PHA03283 envelope glycoprotein E; Provisional
Probab=71.36 E-value=25 Score=29.10 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=32.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
....|.|.|++..++|.|+=..+|..+.......|.|.+
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 345799999999999999999999888666666677776
No 173
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=70.62 E-value=14 Score=22.27 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
..|.|.-...+|...|+|.+.+....
T Consensus 46 s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 46 SSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecchhCCCEEEEEEECcccC
Confidence 34666566677889999999988543
No 174
>KOG1480|consensus
Probab=68.60 E-value=3.3 Score=35.74 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
..+.|.|..+...|.|+|+|.|.|-++..
T Consensus 181 ~d~~li~~~arlsd~~nytc~a~ni~~~r 209 (909)
T KOG1480|consen 181 SDHNLIISQARLSDSGNYTCEATNIVAKR 209 (909)
T ss_pred hcCCccccchhhhhcccceeeeehhhccc
Confidence 45678999999999999999999998854
No 175
>PHA03273 envelope glycoprotein C; Provisional
Probab=68.42 E-value=28 Score=28.45 Aligned_cols=77 Identities=13% Similarity=0.126 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee--cCC----Chhhhhhhhh----------hhheeeeeEEECC
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC--VNV----PLYQQRMQQM----------QQHRSEKTAYSNG 72 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~--~p~----p~~~~~e~~~----------~~~~~~~~~~~~g 72 (98)
...|.|..+....+|.|+=..-+.-|.......+.|.- .|. |...++ ... +-.+++++.|..+
T Consensus 197 ~~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~PvL~-Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 197 KFPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHPSLK-GENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ccceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCcccc-CCCceEEEEeeeecCCCceEEEEEeC
Confidence 35699999999999999877555555555555555532 221 222222 222 4567899999655
Q ss_pred CCCcc-ceEEEecEE
Q psy2158 73 SQSIV-SEYSGAILV 86 (98)
Q Consensus 73 ~~~~~-~~f~~~~~~ 86 (98)
..... ..|..+++.
T Consensus 276 g~~V~~~~~~~~~~~ 290 (486)
T PHA03273 276 AKEVDFTKYVTNASS 290 (486)
T ss_pred CeeccccccceeeEE
Confidence 55433 578777776
No 176
>PHA03042 CD47-like protein; Provisional
Probab=66.35 E-value=16 Score=27.90 Aligned_cols=32 Identities=25% Similarity=0.333 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEE
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~ 41 (98)
..+|..... ..-.|+|||.|.+..-+-.....
T Consensus 70 ~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 70 TSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ceEEEEecc-ccCCCceeEEEeecccCccEEEE
Confidence 345555433 44589999998886554433333
No 177
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=65.77 E-value=10 Score=24.21 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=19.4
Q ss_pred CeEEEEEcCCCCCCCe-eEEEEEeCCCCc
Q psy2158 8 GNVGLVIDSIGPGDEG-EYTCCARNEFGE 35 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G-~YtC~A~N~~G~ 35 (98)
....|.+.- ..+|.| .|+|.|.+.++.
T Consensus 60 ~~stlt~~~-~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 60 APATITITV-DREDHGANFSCETELDLRP 87 (100)
T ss_pred eEEEEEEec-chhhCCcEEEEEEEeccCc
Confidence 456677754 455555 999999998774
No 178
>PHA03286 envelope glycoprotein E; Provisional
Probab=65.45 E-value=52 Score=26.96 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEE-EEEe
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF-IQPE 45 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~-L~V~ 45 (98)
....|.|.|+++.++|.|+=...|.-|.+..++. |.|.
T Consensus 125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 3467999999999999999999999988765554 5564
No 179
>PHA03282 envelope glycoprotein E; Provisional
Probab=63.00 E-value=15 Score=30.09 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCCCCeeEEEEEeCCCCc--eEEEEEEEEeec
Q psy2158 9 NVGLVIDSIGPGDEGEYTCCARNEFGE--AICAVFIQPECV 47 (98)
Q Consensus 9 ~~~L~I~~v~~~D~G~YtC~A~N~~G~--~~~s~~L~V~~~ 47 (98)
+.+|.|.++..+|+|.|+-.....-.. +.+...|.|.-.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p~ 163 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGPR 163 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecCC
Confidence 457999999999999999875333222 344556666543
No 180
>PHA03271 envelope glycoprotein C; Provisional
Probab=62.19 E-value=31 Score=28.02 Aligned_cols=78 Identities=13% Similarity=0.108 Sum_probs=46.9
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee--cCC-----Chhhhhhhhh----------hhheeeeeE
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC--VNV-----PLYQQRMQQM----------QQHRSEKTA 68 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~--~p~-----p~~~~~e~~~----------~~~~~~~~~ 68 (98)
.+....|.|.++.-.++|.|.....+.+-......++.+.. .|. |+..++ ... +-.+++++.
T Consensus 203 tt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~-Ge~YkAtC~vAnYYPP~Svrlr 281 (490)
T PHA03271 203 TTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLS-GENYKASCIVRHFYPPGSVYVS 281 (490)
T ss_pred ccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCcccc-CCCceEEEEeeeecCCCceEEE
Confidence 45778999999999999977666666666555544444332 221 222233 222 456789999
Q ss_pred EE-CCCCCccceEEEecE
Q psy2158 69 YS-NGSQSIVSEYSGAIL 85 (98)
Q Consensus 69 ~~-~g~~~~~~~f~~~~~ 85 (98)
|. +|... ......+++
T Consensus 282 Wf~nG~~V-~~~~~rdt~ 298 (490)
T PHA03271 282 WRQNGNIA-TPRKDRDGS 298 (490)
T ss_pred EEeCCccc-cCcccccee
Confidence 94 44444 222245554
No 181
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=60.67 E-value=11 Score=22.45 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=14.6
Q ss_pred EEEcCCCCCCCeeEEEEEeCC
Q psy2158 12 LVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 12 L~I~~v~~~D~G~YtC~A~N~ 32 (98)
+.+.+-. ++.|.|.|.+.+.
T Consensus 37 ~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 37 YLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeeccC-CCCceEEEEeCCC
Confidence 4444555 8999999998654
No 182
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=60.35 E-value=15 Score=22.25 Aligned_cols=25 Identities=16% Similarity=0.008 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
..|.+.....++...|+|.+.+..-
T Consensus 46 s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 46 STLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEcccccCCCEEEEEEechhc
Confidence 3567766667778899999988743
No 183
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=56.13 E-value=25 Score=20.42 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=16.0
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
+.|.|.....++...|+|.+...
T Consensus 48 s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 48 SYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEEccccCCCCCEEEEEEEEc
Confidence 34666555667788899987654
No 184
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=55.69 E-value=45 Score=20.33 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=22.0
Q ss_pred EEEcCCCCCCCeeEEEEE-eCCCCceEEEEEEEE
Q psy2158 12 LVIDSIGPGDEGEYTCCA-RNEFGEAICAVFIQP 44 (98)
Q Consensus 12 L~I~~v~~~D~G~YtC~A-~N~~G~~~~s~~L~V 44 (98)
+........|+|...|.| .|..-.......|.|
T Consensus 45 ~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 456677789999999999 555444444444443
No 185
>PHA03189 UL14 tegument protein; Provisional
Probab=55.38 E-value=27 Score=27.19 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~ 46 (98)
.+|.+ ++..+-+|.|.|+..|.........++.|.+
T Consensus 134 ltLtF-~v~t~taG~Y~CvLrN~tHglv~~rf~ivtd 169 (348)
T PHA03189 134 LTLTF-RVSTSTAGMYECVLRNETHGLVLQRFVIVTD 169 (348)
T ss_pred EEEEE-EEEecccceEEEEeccccceeeeEEeeeeee
Confidence 44555 6677889999999999855444444444443
No 186
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=54.46 E-value=35 Score=21.23 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCCc
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFGE 35 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G~ 35 (98)
..|.+.-...+|.-.|+|.+.|..-.
T Consensus 59 S~l~~~p~~~d~G~~~tC~v~h~~l~ 84 (95)
T cd05719 59 SEYRLVPSREANGKELTCVVSHPTLQ 84 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcccC
Confidence 45666556666777889999998643
No 187
>KOG4228|consensus
Probab=51.55 E-value=19 Score=32.26 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=37.8
Q ss_pred eEEEEEeCCCCceEEEEEEEEeecCCChhhhhhhhhhhheeeeeEEECCCC
Q psy2158 24 EYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEKTAYSNGSQ 74 (98)
Q Consensus 24 ~YtC~A~N~~G~~~~s~~L~V~~~p~p~~~~~e~~~~~~~~~~~~~~~g~~ 74 (98)
.|+|.+...+|-....+.+.|.+.|.++.+.. .+....++.-++|-.++.
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~-vt~~~~~~~~~~~~~~~t 50 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNGGPPGPSTPN-VTGSTATSWVQAELLGST 50 (1087)
T ss_pred CeeeeecccCCCccceEEEEecCCCCCCCCcc-cccccccceeehhhccCC
Confidence 49999999999999999999887765554444 344556677778877777
No 188
>PHA03282 envelope glycoprotein E; Provisional
Probab=51.07 E-value=16 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCCCCeeEEEEE-eCCCCce
Q psy2158 7 SGNVGLVIDSIGPGDEGEYTCCA-RNEFGEA 36 (98)
Q Consensus 7 ~g~~~L~I~~v~~~D~G~YtC~A-~N~~G~~ 36 (98)
.+...|.+.|+..+++|.|.|+. -|..-++
T Consensus 330 ~n~VdL~F~nAp~saSGLYVfVl~yNGHVeA 360 (540)
T PHA03282 330 GHTVNLQLRDASEASGGLYVCVVYVNGHVHA 360 (540)
T ss_pred CCccceEecCCCcccCceEEEEEEECCeeee
Confidence 46668999999999999999985 4544333
No 189
>KOG3515|consensus
Probab=50.58 E-value=13 Score=32.00 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.4
Q ss_pred EcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeec
Q psy2158 14 IDSIGPGDEGEYTCCARNEFGEAICAVFIQPECV 47 (98)
Q Consensus 14 I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~ 47 (98)
+.++...|.|.|.|.|.|+.|.+.+...+.+...
T Consensus 462 ~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~s 495 (741)
T KOG3515|consen 462 GVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTS 495 (741)
T ss_pred cceeeeccCCcceeeeccCCCceeeEEeeccccC
Confidence 5678899999999999999999988777666543
No 190
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=50.35 E-value=61 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.484 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
...++.+.|++..|.|.|+|+.-..
T Consensus 79 keYsf~~~Nvs~sdEGrYrCIFYLn 103 (500)
T PHA02914 79 KEYSFIEENIGEHEDGDFKCIFYLG 103 (500)
T ss_pred ceeEEEecCcccccCCcEEEEEEeC
Confidence 4567899999999999999986543
No 191
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=47.07 E-value=61 Score=19.56 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=13.3
Q ss_pred EcCCCCCCCeeEEEEEeCCC
Q psy2158 14 IDSIGPGDEGEYTCCARNEF 33 (98)
Q Consensus 14 I~~v~~~D~G~YtC~A~N~~ 33 (98)
...+.+.+.+.|+|.+.+..
T Consensus 64 ~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 64 TLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred EEEECCCCCCEEEEEEEeCC
Confidence 33445557888889876653
No 192
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=45.22 E-value=50 Score=20.64 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
..|.+.-...+|...|+|.+.|..-
T Consensus 59 S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 59 SEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCccc
Confidence 3566655555667788999999753
No 193
>PHA03270 envelope glycoprotein C; Provisional
Probab=44.46 E-value=1.5e+02 Score=24.22 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=40.2
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEee--cCC----Chhhhhhhhh----------hhheeeeeEEECCCC
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC--VNV----PLYQQRMQQM----------QQHRSEKTAYSNGSQ 74 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~--~p~----p~~~~~e~~~----------~~~~~~~~~~~~g~~ 74 (98)
.|.|..+....+|.|+=..-+.-+.......+.|.- .|. |...++ ... +-.+++++.|+.+..
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~PvL~-Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~ 261 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHAVLE-GEPFGATCVAANYYPGDRAAFRWFEGGD 261 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCcccc-CCCceEEEEeeeecCCCceEEEEEeCCc
Confidence 499999999999999998666556555444455443 221 222222 221 456789999955544
Q ss_pred C
Q psy2158 75 S 75 (98)
Q Consensus 75 ~ 75 (98)
.
T Consensus 262 ~ 262 (466)
T PHA03270 262 E 262 (466)
T ss_pred c
Confidence 4
No 194
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=43.36 E-value=14 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=27.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEEEEE
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L 42 (98)
.+++|+|.++.-...|=|+|.|....-...|..-|
T Consensus 344 k~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl 378 (500)
T PHA02914 344 KNSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCF 378 (500)
T ss_pred hhceEEeeeEEEEcCCceEEEEecCcchhhhhhhe
Confidence 56789999999999999999998875554443333
No 195
>PHA03283 envelope glycoprotein E; Provisional
Probab=41.27 E-value=30 Score=28.65 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEe-CCC
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCAR-NEF 33 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~-N~~ 33 (98)
..+...|.+.|+.++++|.|.|+.. |..
T Consensus 311 ~~~~v~L~f~nap~~~SGLYVfVv~yNgH 339 (542)
T PHA03283 311 AQNRVDLLFKNAPASASGLYVFVLLYNGH 339 (542)
T ss_pred cCCCcceEeccCCcccCceEEEEEEECCe
Confidence 4567889999999999999999854 443
No 196
>PHA03286 envelope glycoprotein E; Provisional
Probab=40.06 E-value=37 Score=27.75 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCCeeEEEEEe-CCCC
Q psy2158 11 GLVIDSIGPGDEGEYTCCAR-NEFG 34 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~-N~~G 34 (98)
.|.+.|+.++++|.|.|++. |..-
T Consensus 308 nL~f~nA~~s~SGLYVfVl~yNGH~ 332 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVALYNGRP 332 (492)
T ss_pred ceeecCCCcccCceEEEEEEECCcc
Confidence 58999999999999999854 4433
No 197
>PHA03281 envelope glycoprotein E; Provisional
Probab=36.98 E-value=37 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCCCCCCeeEEEEEe-CC
Q psy2158 5 PQSGNVGLVIDSIGPGDEGEYTCCAR-NE 32 (98)
Q Consensus 5 ~~~g~~~L~I~~v~~~D~G~YtC~A~-N~ 32 (98)
+..+...|.+.|+.++++|.|.|+.. |.
T Consensus 470 ~~~n~vdL~F~nApasaSGLYVfVl~yNG 498 (642)
T PHA03281 470 IHDGGSALKFVDAAESLSGLYVFIIHFNG 498 (642)
T ss_pred ccCCCcceEeccCCcccCceEEEEEEECC
Confidence 34567789999999999999999854 44
No 198
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=35.66 E-value=21 Score=28.66 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=18.5
Q ss_pred CCCeEEEEEcCCCCCCCeeEEEEEeC
Q psy2158 6 QSGNVGLVIDSIGPGDEGEYTCCARN 31 (98)
Q Consensus 6 ~~g~~~L~I~~v~~~D~G~YtC~A~N 31 (98)
..+...|++.|+...++|.|.|++.=
T Consensus 265 ~~~~~~l~f~~a~~~~sGLYv~V~~~ 290 (439)
T PF02480_consen 265 ASNGVDLQFTNAPESASGLYVFVVYY 290 (439)
T ss_dssp -TTSSSEEESS--GGG-EEEEEEEEE
T ss_pred cCCCcceEecCCCcccCceEEEEEEE
Confidence 34666799999999999999998654
No 199
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=34.77 E-value=25 Score=19.90 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=14.5
Q ss_pred hheeeeeEEECCC--CCccceEEEec
Q psy2158 61 QHRSEKTAYSNGS--QSIVSEYSGAI 84 (98)
Q Consensus 61 ~~~~~~~~~~~g~--~~~~~~f~~~~ 84 (98)
...++.++|.+.. ...+..|+|.-
T Consensus 12 ~~~sv~v~W~~~~~~~~~~~~y~v~~ 37 (85)
T PF00041_consen 12 SPTSVTVSWKPPSSGNGPITGYRVEY 37 (85)
T ss_dssp CSSEEEEEEEESSSTSSSESEEEEEE
T ss_pred CCCEEEEEEECCCCCCCCeeEEEEEE
Confidence 4556777776664 33666666653
No 200
>PHA03281 envelope glycoprotein E; Provisional
Probab=33.06 E-value=2.1e+02 Score=24.18 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=30.2
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEE-EEEEEEee
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAIC-AVFIQPEC 46 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~-s~~L~V~~ 46 (98)
+...|.|.++++..+|.|+=-....-|...- ...|.|.+
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 3458999999999999999888877775544 55566765
No 201
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=32.83 E-value=1.5e+02 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCC
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNE 32 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~ 32 (98)
....|+|.+-.++|+|.|--...-.
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLD 146 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEEC
Confidence 3456999999999999998765544
No 202
>KOG3515|consensus
Probab=30.09 E-value=38 Score=29.18 Aligned_cols=72 Identities=13% Similarity=0.061 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCeeEEEEEeCCCCceEEEEEEEEeecCCChhhhhhhhhhhheeeeeEEECCCCC-ccceEEEe
Q psy2158 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEKTAYSNGSQS-IVSEYSGA 83 (98)
Q Consensus 11 ~L~I~~v~~~D~G~YtC~A~N~~G~~~~s~~L~V~~~p~p~~~~~e~~~~~~~~~~~~~~~g~~~-~~~~f~~~ 83 (98)
..-|.|.-..+.+...|.+.|.+|....+..+.....+.++..+-. -.-.....-+.|.||-+. ....|-+.
T Consensus 655 ~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~-~~~~~~~i~l~~~p~fdgg~~q~f~~~ 727 (741)
T KOG3515|consen 655 SEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTASVGPINLTY-DNLTYSTISLEWMPGFDGGLQQRFFLK 727 (741)
T ss_pred cccccCCcchhhhcceeeecccCCCccccceecCCcCCCCccceEe-eeeeeeeeceeeeeccccccccceeee
Confidence 3444455555545599999999999988777665556666655441 112344567889999888 54555443
No 203
>KOG0196|consensus
Probab=28.62 E-value=2.3e+02 Score=25.26 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=47.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceE------EEEEEEE-eecCCChhhhhhhhhhhheeeeeEE-ECCCCC-ccc
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAI------CAVFIQP-ECVNVPLYQQRMQQMQQHRSEKTAY-SNGSQS-IVS 78 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~------~s~~L~V-~~~p~p~~~~~e~~~~~~~~~~~~~-~~g~~~-~~~ 78 (98)
......|.++.+.-.=.+...|.|.....+ +.+.+.. +..|.+...++ +...+.++..++| .|...+ .|.
T Consensus 396 t~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r-~~~~~~~sitlsW~~p~~png~il 474 (996)
T KOG0196|consen 396 TETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLR-QVSRTSDSITLSWSEPDQPNGVIL 474 (996)
T ss_pred ccceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEE-EeeeccCceEEecCCCCCCCCcce
Confidence 445678888888776666777888754322 3333332 12333333344 2235677899999 444444 777
Q ss_pred eEEEecEEE
Q psy2158 79 EYSGAILVM 87 (98)
Q Consensus 79 ~f~~~~~~~ 87 (98)
+|-+.=|+.
T Consensus 475 dYEvky~ek 483 (996)
T KOG0196|consen 475 DYEVKYYEK 483 (996)
T ss_pred eEEEEEeec
Confidence 887766654
No 204
>PF13757 VIT_2: Vault protein inter-alpha-trypsin domain
Probab=27.44 E-value=1.3e+02 Score=18.43 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=19.6
Q ss_pred eeeEEECCCCCccceE---------EEecEEEee
Q psy2158 65 EKTAYSNGSQSIVSEY---------SGAILVMKV 89 (98)
Q Consensus 65 ~~~~~~~g~~~~~~~f---------~~~~~~~~~ 89 (98)
..++|.|++++|++-. .|.+|+.++
T Consensus 32 a~lty~N~~~~plEg~f~fPL~e~~~V~gfea~i 65 (78)
T PF13757_consen 32 ASLTYENPEDRPLEGVFVFPLDEGATVVGFEADI 65 (78)
T ss_pred EEEEEECCCCCcEEEEEEEecCCCcEEEEEEEEe
Confidence 4788899999877665 778888775
No 205
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=25.64 E-value=23 Score=28.43 Aligned_cols=39 Identities=33% Similarity=0.373 Sum_probs=0.0
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCceEEE-EEEEEee
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICA-VFIQPEC 46 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~~~s-~~L~V~~ 46 (98)
+...|.|.|++..|+|.|+=...|.-|..... ..|.|.+
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 45679999999999999999998888776543 4455654
No 206
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=23.40 E-value=1.6e+02 Score=17.03 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCCCeeEEEEEeCCCC
Q psy2158 10 VGLVIDSIGPGDEGEYTCCARNEFG 34 (98)
Q Consensus 10 ~~L~I~~v~~~D~G~YtC~A~N~~G 34 (98)
..|.+..-..++...++|.|.|..-
T Consensus 61 S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 61 STLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp EEEEEETTGGGTTEEEEEEEEETTC
T ss_pred EEEEEEcChHHCCeEEEEEEECCcc
Confidence 3466655445567788999988754
No 207
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=22.12 E-value=1.8e+02 Score=16.91 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=8.1
Q ss_pred CCCCeeEEEEEeCC
Q psy2158 19 PGDEGEYTCCARNE 32 (98)
Q Consensus 19 ~~D~G~YtC~A~N~ 32 (98)
..+...|+|.+...
T Consensus 63 ~~~~~~ysC~V~H~ 76 (83)
T PF07654_consen 63 WNSGDEYSCRVTHE 76 (83)
T ss_dssp TTTTGGEEEEEEET
T ss_pred CCCCCEEEEEEEEC
Confidence 45555677765544
No 208
>PHA03240 envelope glycoprotein M; Provisional
Probab=21.12 E-value=37 Score=25.28 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCCCeeEEEEEeCCCCce
Q psy2158 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEA 36 (98)
Q Consensus 8 g~~~L~I~~v~~~D~G~YtC~A~N~~G~~ 36 (98)
-+.+|.|.++..+|.|+|+-......|..
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~~ 131 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGDC 131 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCCc
Confidence 35689999999999999976655556654
Done!