RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2158
(98 letters)
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 50.7 bits (121), Expect = 3e-09
Identities = 15/89 (16%), Positives = 32/89 (35%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
M D +G + + ++ + DEG YT ++ V + + + Q+ +
Sbjct: 52 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE 111
Query: 61 QHRSEKTAYSNGSQSIVSEYSGAILVMKV 89
R + + V+ +L KV
Sbjct: 112 WIRKQGPHFVEYLSWEVTGECNVLLKCKV 140
Score = 49.5 bits (118), Expect = 7e-09
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
+D + G L+I D G Y +++ G+
Sbjct: 164 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 199
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 51.1 bits (122), Expect = 3e-09
Identities = 15/89 (16%), Positives = 32/89 (35%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
M D +G + + ++ + DEG YT ++ V + + + Q+ +
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE 216
Query: 61 QHRSEKTAYSNGSQSIVSEYSGAILVMKV 89
R + + V+ +L KV
Sbjct: 217 WIRKQGPHFVEYLSWEVTGECNVLLKCKV 245
Score = 47.7 bits (113), Expect = 5e-08
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+D + G L+I D G Y +++ G+ +
Sbjct: 269 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306
Score = 40.0 bits (93), Expect = 3e-05
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46
+ + +G D G Y+C + G A + + E
Sbjct: 53 SKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEEL 94
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 48.0 bits (115), Expect = 7e-09
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
+ + + G L I + GD G YTC A NE+G C
Sbjct: 53 FAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQC 90
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor,
receptor tyrosine kinase, 3D-domain swapping,
transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 47.5 bits (113), Expect = 2e-08
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + L+ + + G YT A+N G A +
Sbjct: 59 EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 46.9 bits (112), Expect = 2e-08
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ L+I + D G YT NEFG V I
Sbjct: 54 FHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNI 95
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 48.8 bits (116), Expect = 2e-08
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQH 62
+D + G L+I D G Y +++ G+ + + +++
Sbjct: 54 HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV---DEAF------KELMME 104
Query: 63 RSEKTAYSNGSQSIVSEYSGAILVMKV 89
+K A S I S G L V
Sbjct: 105 VCKKIALSATDLKIQSTAEGIQLYSFV 131
Score = 48.4 bits (115), Expect = 3e-08
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
I+ + D G+Y +N++G + V +P
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS---VFIP 316
Score = 41.8 bits (98), Expect = 6e-06
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + L I+ P D+G+Y + V +
Sbjct: 155 VKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 197
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 46.5 bits (111), Expect = 2e-08
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
Y P+ LVI + D A N GE
Sbjct: 55 YWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS 90
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 46.5 bits (111), Expect = 2e-08
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ G L+ + + D G Y C A+N GEA V
Sbjct: 57 SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTV 92
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 47.9 bits (114), Expect = 3e-08
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
I+ + D G+Y +N++G + V +P
Sbjct: 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS---VFIP 211
Score = 41.4 bits (97), Expect = 8e-06
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ L I+ P D+G+Y + V
Sbjct: 57 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 46.2 bits (110), Expect = 4e-08
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
++G L+I+ + D G YTC A N G+ ++
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 45.8 bits (109), Expect = 4e-08
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
++G L I P D G YTC A N G+ C
Sbjct: 60 EAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 45.8 bits (109), Expect = 5e-08
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
+ D G L + D+G YT A N G C
Sbjct: 58 IQRDLD-GTCSLHTTASTLDDDGNYTIMAANPQGRISC 94
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 46.1 bits (109), Expect = 6e-08
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L ++ + G YT A N FG+A ++
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 45.4 bits (108), Expect = 7e-08
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
++Y+ G L + I D+G Y C N++GE
Sbjct: 51 ITYED--GVAILYVKDITKLDDGTYRCKVVNDYGEDSS 86
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 45.4 bits (108), Expect = 7e-08
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I + G YT N+ G V +
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 45.0 bits (107), Expect = 8e-08
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
Y SG + L I D G Y N GEA
Sbjct: 56 HYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASD 92
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 44.7 bits (106), Expect = 1e-07
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L +D+ + G+YT A+NE+G+ +
Sbjct: 64 LQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 44.7 bits (106), Expect = 2e-07
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 5/50 (10%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
D GL++ + P D G Y C ARN GEA A + V P
Sbjct: 62 FPADG--AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT---VLEP 106
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 45.2 bits (107), Expect = 2e-07
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
+ YD + GN L I + D+ +YTC A N GEA C
Sbjct: 90 IDYDEE-GNCSLTISEVCGDDDAKYTCKAVNSLGEATC 126
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 46.3 bits (110), Expect = 2e-07
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
M + + LVI+ + D GEYTC A N G + + + +P
Sbjct: 54 MQFKNNVAS--LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLP 101
Score = 46.0 bits (109), Expect = 2e-07
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 6 QSGNVG-LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ + I ++ D GEY C A N+ G C I + P
Sbjct: 435 SENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT---LKAP 477
Score = 43.3 bits (102), Expect = 2e-06
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L + + GD G+YTC A N G+ C+ + V P
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG---VQEP 290
Score = 42.9 bits (101), Expect = 3e-06
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L + ++ D G+YTC A N G A + ++ V P
Sbjct: 343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK---VKEP 384
Score = 42.5 bits (100), Expect = 4e-06
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 6 QSGNVG-LVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
S N+ L P + G+YTC +NE G C +
Sbjct: 529 YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATL 566
Score = 42.1 bits (99), Expect = 5e-06
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
S+ L I G+Y C A N G A + +
Sbjct: 150 TSFIHNVAT--LQILQTDQSHVGQYNCSASNPLGTASSSAKL 189
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 45.5 bits (108), Expect = 2e-07
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ G L I ++ + G Y+ A N G+A + + P
Sbjct: 54 VQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
Score = 44.3 bits (105), Expect = 6e-07
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 6 QSGNVG-LVIDSIGPGDEGEYTCCARNEFGEAIC 38
Q G++ L+I P D G Y+ A N G A
Sbjct: 154 QEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 44.2 bits (105), Expect = 2e-07
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ GN L I + DEG YTC A + G A F +
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI---IEGA 101
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 43.9 bits (104), Expect = 2e-07
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ D +S + S D G Y +NE GE +
Sbjct: 49 LLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 45.1 bits (107), Expect = 3e-07
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ---PECVNVPLYQQRMQ 57
+ + G L+I S+ D Y A N+ G ++ P +++P + M
Sbjct: 55 QEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMG 112
Score = 43.6 bits (103), Expect = 1e-06
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
S + + + D G Y CA+N FG V
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 43.8 bits (104), Expect = 3e-07
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAIC 38
L I D G YTC +N G
Sbjct: 64 LEIHKTDTSDSGLYTCTVKNSAGSVSS 90
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 44.7 bits (105), Expect = 3e-07
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + ++ DEG YT +N GE + ++
Sbjct: 94 VRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 43.9 bits (104), Expect = 3e-07
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
Y +G V L+I + D G YT A NE G C
Sbjct: 66 YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTC 101
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 45.2 bits (107), Expect = 4e-07
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
Y+ + GL I+ + D+GEYT A+N +G VF+
Sbjct: 531 KRYN--GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 45.1 bits (106), Expect = 4e-07
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQH 62
+ GN L I + DEG YTC A + G A F + + +++ H
Sbjct: 716 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI---IEGAQEKTNLERTHHH 769
Score = 41.7 bits (97), Expect = 7e-06
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I + D G YT N + + + V VP
Sbjct: 383 LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV-VYVP 420
Score = 41.7 bits (97), Expect = 8e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L ID + D+G YTC A + + F++
Sbjct: 292 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 323
Score = 41.3 bits (96), Expect = 1e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I + D G Y C R ++ V++Q
Sbjct: 88 LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ 119
Score = 40.9 bits (95), Expect = 1e-05
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + + + + D+G+Y C A++ + V Q
Sbjct: 622 NDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658
Score = 40.9 bits (95), Expect = 1e-05
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+S+D G I S G C A+ ++I
Sbjct: 177 ISWDS---KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYI 215
Score = 36.7 bits (84), Expect = 5e-04
Identities = 6/44 (13%), Positives = 9/44 (20%), Gaps = 3/44 (6%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ Y C A N+ G + V
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH---VTRG 550
Score = 31.7 bits (71), Expect = 0.029
Identities = 3/31 (9%), Positives = 8/31 (25%)
Query: 14 IDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44
+ S + C + +V +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL 31
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 44.9 bits (106), Expect = 5e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
GLVI + GD+G Y C A NE G+ +Q
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 43.4 bits (102), Expect = 2e-06
Identities = 12/38 (31%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 3 YDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
G+ LV DEG Y C A G A V
Sbjct: 57 LRKDEGS--LVFLRPQASDEGHYQCFAETPAGVASSRV 92
Score = 39.5 bits (92), Expect = 4e-05
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
++ L+ + P DEG YTC N G+
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL 301
Score = 32.2 bits (73), Expect = 0.015
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 6 QSGNVGLVIDSIGP---GDEGEYTCCARNEFGEAICA 39
GN L + D +Y C A+N +
Sbjct: 159 PDGN--LYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 193
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 44.7 bits (106), Expect = 6e-07
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L + + GD G+YTC A N G+ C+ + V P
Sbjct: 59 NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG---VQEP 98
Score = 43.6 bits (103), Expect = 1e-06
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
MS+ L + ++ D G+YTC A N G A + ++ V P
Sbjct: 148 MSFVESVAV--LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK---VKEP 192
Score = 42.4 bits (100), Expect = 4e-06
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ I ++ D GEY C A N+ G C I
Sbjct: 250 IHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 43.1 bits (101), Expect = 7e-07
Identities = 6/38 (15%), Positives = 9/38 (23%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ L I P G Y C + +
Sbjct: 68 KVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 43.1 bits (102), Expect = 7e-07
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ D GEY + E + + I+
Sbjct: 81 FFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 44.5 bits (105), Expect = 7e-07
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 3/69 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
++ + + L+I D G+Y C N G + V PL + Q
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT---VTAPLSAKIDPPTQ 353
Query: 61 QHRSEKTAY 69
+ A
Sbjct: 354 TVDFGRPAV 362
Score = 44.2 bits (104), Expect = 1e-06
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
L +D+I +EG Y C A N G + AV
Sbjct: 775 LHVDNIQKTNEGYYLCEAINGIGSGLSAV 803
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I+++ G +TC ARN G + V VP
Sbjct: 679 LTIEAVEASHAGNFTCHARNLAGHQQFTTPLN---VYVP 714
Score = 42.6 bits (100), Expect = 3e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I S+ D G Y C A+++ G A + +
Sbjct: 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLN 523
Score = 41.5 bits (97), Expect = 8e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I+S+ D+G Y C RN+ A + ++
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELK 422
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 12 LVIDSIG-PGDEGEYTCCARNEFGEAICA-----VFIQPECVNVPLYQQRMQQ 58
L+I+++ D+ YTC A+N+ G + V + P + + Q
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQV 633
Score = 34.9 bits (80), Expect = 0.002
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 13 VIDSIGPGDEGEYTCCARNEFGEAIC 38
D Y C ARN+FG I
Sbjct: 103 AEDYRQEVHAQVYACLARNQFGSIIS 128
Score = 32.6 bits (74), Expect = 0.011
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 6 QSGNVGLVIDSIGPGD-EGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRS 64
SG L I +GP D Y C ++ + V + ++
Sbjct: 197 PSGE--LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 65 EKTAYSNGSQSIV 77
+GS ++
Sbjct: 255 FDMKTYSGSSTMA 267
Score = 31.4 bits (71), Expect = 0.026
Identities = 3/29 (10%), Positives = 7/29 (24%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ + + + A G A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAA 29
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 42.7 bits (100), Expect = 1e-06
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ I G Y C + C+ ++
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 42.0 bits (99), Expect = 1e-06
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
++ I S+ DEG Y+ N G+
Sbjct: 63 VTTTK--YKSTFEISSVQASDEGNYSVVVENSEGKQEAEF 100
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 43.7 bits (103), Expect = 1e-06
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA----VFIQPE 45
L + +I D G Y C A N+ GE VF+Q
Sbjct: 250 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH 287
Score = 39.4 bits (92), Expect = 4e-05
Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA-----VFIQPECVNVP 50
+ L I + D G Y C A + G+ A ++ + V
Sbjct: 55 KEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVV 105
Score = 36.3 bits (84), Expect = 5e-04
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 11 GLVIDSIGPGDEGEYTCCARNE-FGEAICAVFIQPECVNVP 50
L I +I DEG Y C R E GE I VNVP
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI--VNVP 192
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 43.5 bits (102), Expect = 1e-06
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
+ L + ++ D GEYTC A N G + + +
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322
Score = 40.0 bits (93), Expect = 3e-05
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
+ LV++S+ P D G YTC N+FG
Sbjct: 176 RHQQWSLVMESVVPSDRGNYTCVVENKFGSI 206
Score = 37.7 bits (87), Expect = 2e-04
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICA 39
G L + + D G Y+C R
Sbjct: 59 GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHF 90
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 41.7 bits (98), Expect = 2e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
Y ++ + L+++S+ P D+G YTC NE+G
Sbjct: 56 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI 91
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 43.4 bits (102), Expect = 2e-06
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
PQ L I I P + G Y C N ++ + V
Sbjct: 599 PQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKS---ITVS 641
Score = 39.6 bits (92), Expect = 4e-05
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
Q L I +I + G YTC A N
Sbjct: 421 IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKT 459
Score = 38.8 bits (90), Expect = 9e-05
Identities = 11/57 (19%), Positives = 15/57 (26%), Gaps = 1/57 (1%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQ 61
Q L I +I + G YTC A N V + +
Sbjct: 243 FQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT-VYAEPPKPFITSNNS 298
Score = 38.0 bits (88), Expect = 1e-04
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
+GN L + ++ D Y C +N
Sbjct: 517 NGNRTLTLFNVTRNDARAYVCGIQNSVSANR 547
Score = 37.2 bits (86), Expect = 3e-04
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
+GN L + ++ D Y C +N
Sbjct: 160 SNGNRTLTLFNVTRNDTASYKCETQNPVSAR 190
Score = 37.2 bits (86), Expect = 3e-04
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + S+ D G Y C +NE
Sbjct: 344 LTLLSVTRNDVGPYECGIQNELSVD 368
Score = 36.1 bits (83), Expect = 8e-04
Identities = 9/57 (15%), Positives = 14/57 (24%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEKTA 68
L+I +I D G YT A +P + +
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAV 129
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 41.2 bits (97), Expect = 2e-06
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
P + L++ IGP D+G Y+C A +
Sbjct: 52 PLPPSPVLILPEIGPQDQGTYSCVATHSSHGP 83
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 43.0 bits (101), Expect = 2e-06
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+V L + ++ D GEY C A N G A A ++
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
Score = 41.1 bits (96), Expect = 9e-06
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
LV++S+ P D G YTC N+FG +
Sbjct: 74 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 42.9 bits (101), Expect = 3e-06
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I + DEG Y C A NE G A + + V P
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI---VPKP 402
Score = 40.2 bits (94), Expect = 2e-05
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
G L+I ++ D G YTC + + + V VP
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT---VLVP 312
Score = 38.7 bits (90), Expect = 8e-05
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 5/54 (9%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE-----AICAVFIQPECVNVPLYQQRMQQMQ 60
L I + PGD G Y C ARN A + P + QR +
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVI 232
Score = 30.6 bits (69), Expect = 0.059
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAIC 38
++ DEG Y C A +I
Sbjct: 84 ILHSRHHKPDEGLYQCEASLGDSGSII 110
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 41.3 bits (97), Expect = 3e-06
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I GD G YTC A GEA + +I+
Sbjct: 64 LQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 42.1 bits (99), Expect = 3e-06
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ N L + +I D G Y C A N+ GE F+Q
Sbjct: 148 KGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
Score = 37.1 bits (86), Expect = 3e-04
Identities = 12/34 (35%), Positives = 13/34 (38%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA 39
N L I +I DEG Y C R E I
Sbjct: 53 MLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 86
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 42.1 bits (99), Expect = 4e-06
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+S + + + D G Y CA+N FG V +
Sbjct: 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 41.7 bits (98), Expect = 6e-06
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ---PECVNVPLYQQRMQQMQQHR 63
G L+I S+ D Y A N+ G ++ P +++P + M + R
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 64 SEK 66
E
Sbjct: 119 GEV 121
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 42.2 bits (99), Expect = 5e-06
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I+S+ D+G Y C RN+ A + ++
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 39.9 bits (93), Expect = 3e-05
Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLY 52
L+I D G+Y C N G + V PL
Sbjct: 272 LIIKDAVVEDSGKYLCVVNNSVGGESVETVLT---VTAPLS 309
Score = 34.5 bits (79), Expect = 0.002
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 15 DSIGPGDEGEYTCCARNEFGEAI 37
D Y C ARN+FG I
Sbjct: 70 DYRQEVHAQVYACLARNQFGSII 92
Score = 28.4 bits (63), Expect = 0.30
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 6 QSGNVGLVIDSIGPGD-EGEYTCCARNEFGEAI 37
SG L I +GP D Y C ++
Sbjct: 162 PSGE--LHIREVGPEDGYKSYQCRTKHRLTGET 192
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 41.8 bits (98), Expect = 5e-06
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
S L + ++ D GEY C N G+A + +
Sbjct: 182 SNAEVLALFNVTEADAGEYICKVSNYIGQANQSAW 216
Score = 39.5 bits (92), Expect = 3e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
++ + L+++S+ P D+G YTC NE+G
Sbjct: 72 RNQHWSLIMESVVPSDKGNYTCVVENEYGSI 102
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 41.8 bits (98), Expect = 6e-06
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ ++ Y C NE G + F+
Sbjct: 363 EVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 41.8 bits (98), Expect = 6e-06
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
++ N L I ++ D GEY C A N+ G + ++ V
Sbjct: 271 ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVR---VKAA 312
Score = 36.8 bits (85), Expect = 4e-04
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 1 MSYDPQSGNV--GLVIDSIGPGDEGEYTCCARNEFGEAIC 38
+S +SG + EGEY C ARN+FG A+
Sbjct: 66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALS 105
Score = 32.1 bits (73), Expect = 0.015
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 6 QSGNVGLVIDSIGPGD-EGEYTCCARNEFGEAI 37
+G+ L ++ D + +Y+C AR F I
Sbjct: 169 HNGD--LYFSNVMLQDMQTDYSCNARFHFTHTI 199
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 41.5 bits (97), Expect = 7e-06
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
SY LV D + D GEY+C ARN +G + +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN 201
Score = 40.7 bits (95), Expect = 1e-05
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
G+ S+ D G YTC E G + V ++ V VP
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI-VLVP 107
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 41.3 bits (97), Expect = 8e-06
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L + +I D G Y C A N+ GE F+Q V V
Sbjct: 60 LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ---VFVQ 95
Score = 40.6 bits (95), Expect = 1e-05
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
Q G+ L I + D G Y C A + G ++++
Sbjct: 149 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 41.5 bits (97), Expect = 8e-06
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ G+ S+ D GEYTC E G+ V I V VP
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT-VLVP 104
Score = 40.7 bits (95), Expect = 1e-05
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
S+ + L+ D + D GEY C A+N +G A+ + ++
Sbjct: 161 SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH---MDAV 206
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 41.3 bits (97), Expect = 8e-06
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA 39
+ L I+ D+G+Y C A N G A
Sbjct: 158 IKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSA 196
Score = 37.5 bits (87), Expect = 2e-04
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ +D SG+V + P DE Y C A N GE + +
Sbjct: 55 IEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT 97
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 41.4 bits (97), Expect = 8e-06
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L + D G Y C A N+ G + +
Sbjct: 348 LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 38.7 bits (90), Expect = 7e-05
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLY 52
L I ++ DEG Y C A N G I ++
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRII---IHAQPD 296
Score = 37.9 bits (88), Expect = 1e-04
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+GN L I D G Y+C A + +VF + +++
Sbjct: 157 TGN--LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLA 198
Score = 34.8 bits (80), Expect = 0.002
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAI 37
++ + + D G Y C A N G +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVV 89
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 41.6 bits (97), Expect = 9e-06
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
G V +VI + GEY ++E +
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 39.3 bits (91), Expect = 4e-05
Identities = 5/32 (15%), Positives = 9/32 (28%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ GEY A N+ + +
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
Score = 37.7 bits (87), Expect = 2e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
+ + S+ D G YTC + ++
Sbjct: 289 ILFAFVSSVARNDTGYYTCSSSKHPSQSA 317
Score = 32.0 bits (72), Expect = 0.019
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
V+ + D CCARNE G +F
Sbjct: 186 ESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLFT 223
Score = 24.6 bits (53), Expect = 6.8
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 14 IDSIGPGDEGEYTCCARNEFGEAI 37
+ G Y + +
Sbjct: 19 NNDSSVGKSSSYPMVSESPEDLGC 42
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 40.8 bits (96), Expect = 1e-05
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
MS D L + + DEG YTC A NE GE
Sbjct: 56 MSSDG--RTHTLTVMTEEQEDEGVYTCIATNEVGEVET 91
Score = 39.7 bits (93), Expect = 3e-05
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 5 PQSGNVGLVIDSIG-PGDEGEYTCCARNEFGEAICAVFIQ 43
LV+ ++ G+Y N FG + ++
Sbjct: 154 NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 41.0 bits (96), Expect = 1e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I ++ DE EY C A N+ GE ++ ++
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
Score = 36.8 bits (85), Expect = 4e-04
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I I DEG Y C R I IQ VNVP
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI-VNVP 194
Score = 34.5 bits (79), Expect = 0.002
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L I + D G Y C E G
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQ 88
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 41.0 bits (96), Expect = 1e-05
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I + D G Y C A N+ G + +
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 39.8 bits (93), Expect = 3e-05
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLY 52
N L I + D G Y C A N G+ + +
Sbjct: 254 HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT---FYAQPN 297
Score = 36.4 bits (84), Expect = 5e-04
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC 38
++GN L I + D G YTC N
Sbjct: 155 ETGN--LYIAKVEKSDVGNYTCVVTNTVTNHKV 185
Score = 35.6 bits (82), Expect = 0.001
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 12 LVIDSIG-PGDEGEYTCCARNEFGEAI 37
L+I++ D G Y C A N FG +
Sbjct: 64 LLINNPNKTQDAGTYQCIATNSFGTIV 90
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 39.7 bits (93), Expect = 1e-05
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I ++ D G YTC A + GE + +
Sbjct: 64 LQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 39.7 bits (93), Expect = 1e-05
Identities = 6/36 (16%), Positives = 10/36 (27%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + P D G Y C + G +
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 41.1 bits (96), Expect = 1e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L +D + G Y+C A N G+ ++F +
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Score = 39.6 bits (92), Expect = 4e-05
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L ++ + G Y C + A+ + V P
Sbjct: 53 LSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY---VKDP 88
Score = 33.8 bits (77), Expect = 0.004
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
S+ P G I +Y C A + +
Sbjct: 138 YSFSP---WHGFTIHRAKFIQSQDYQCSALMGGRKVM 171
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 41.2 bits (96), Expect = 1e-05
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L + + + G YT N A A + VN
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVY---VNTK 412
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I S D G + C A N FG A ++ V
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLE---VVDK 310
Score = 39.3 bits (91), Expect = 5e-05
Identities = 10/51 (19%), Positives = 13/51 (25%), Gaps = 3/51 (5%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQH 62
IDS G C A N+ G+ +Q H
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA---FKGNNKEQIHPHHHHH 523
Score = 33.5 bits (76), Expect = 0.005
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAI 37
+ + + G+YTC ++ +I
Sbjct: 82 WITEKAEATNTGKYTCTNKHGLSNSI 107
Score = 30.0 bits (67), Expect = 0.11
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 6 QSGNVGLVIDSIGP-GDEGEYTCCARNEFGEAICAVFI 42
G++I S+ C E + FI
Sbjct: 164 PDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFI 201
Score = 25.0 bits (54), Expect = 4.7
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 4/27 (14%)
Query: 18 GPGDEGEYTCC----ARNEFGEAICAV 40
G ++ C R + G + +V
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSV 29
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 41.1 bits (96), Expect = 1e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L ++++ D G Y+C A N+ G + Q
Sbjct: 247 LSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
Score = 40.7 bits (95), Expect = 2e-05
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 3/49 (6%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ DP+S L + + G Y C + + + V P
Sbjct: 43 TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY---VKDP 88
Score = 35.7 bits (82), Expect = 8e-04
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 4/62 (6%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEK 66
S G +I D Y C E+ + V Q++ S+
Sbjct: 141 SPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW----LKVNRVHPEPPQIKLEPSKL 196
Query: 67 TA 68
Sbjct: 197 VR 198
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 40.5 bits (95), Expect = 1e-05
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L I++ D+G+Y C A N G
Sbjct: 165 LQIENSREEDQGKYECVAENSMGTEHSK 192
Score = 33.6 bits (77), Expect = 0.004
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 13 VIDSIGPGDEGEYTCCARNEFGEAICA 39
+ D+ Y C A N G+A+ A
Sbjct: 68 IEPVRAGRDDAPYECVAENGVGDAVSA 94
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 39.0 bits (91), Expect = 2e-05
Identities = 6/32 (18%), Positives = 10/32 (31%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + P D G Y C + G +
Sbjct: 62 VEVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 40.1 bits (94), Expect = 2e-05
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L I ++ D G+Y C A+N G A
Sbjct: 155 LRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
Score = 40.1 bits (94), Expect = 2e-05
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA-----VFIQPECVNVP 50
L I S+ D+G Y C A N G A+ + V ++P+ P
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP 107
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 39.3 bits (92), Expect = 2e-05
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
LVID + P DEG+YT + V+ P
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSGP 103
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 40.2 bits (93), Expect = 2e-05
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
++ D + + + ++ D+G YTC E+ + + V +Q+ +
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLH---VVQDEFQRTISPTP 248
Query: 61 QHRSEKTAYSNGSQ 74
+ NG+Q
Sbjct: 249 PTDKGQQGILNGNQ 262
Score = 39.5 bits (91), Expect = 4e-05
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQ 58
+ D + L++ + DEG YTC R + + ++ + V + R +
Sbjct: 75 LVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVE---LWVLPEEPRDLR 129
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 40.2 bits (94), Expect = 2e-05
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
Q G+ L I + D G Y C A + G ++++ +
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD---IEYA 100
Score = 39.0 bits (91), Expect = 6e-05
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
+ + L I D G Y C A N G
Sbjct: 149 LKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 38.5 bits (90), Expect = 2e-05
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
++ + +G Y C N+
Sbjct: 45 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 76
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 39.2 bits (91), Expect = 2e-05
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
Q + ID++ D G Y C A N+
Sbjct: 86 QHAASTISIDTLVEEDTGTYECRASNDPDRN 116
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 38.8 bits (91), Expect = 3e-05
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45
LVI D GEYTC A V +
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKSTASLHVEEKAS 98
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 39.7 bits (92), Expect = 3e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
S D +SG+ + + ++ D G Y C + G A + V V
Sbjct: 76 SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT---VLVK 121
Score = 38.5 bits (89), Expect = 8e-05
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ + + + + + G Y+C +N G C + +
Sbjct: 168 PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 39.5 bits (92), Expect = 3e-05
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ L I +I DEG Y C A N G+ I
Sbjct: 161 STSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
Score = 37.9 bits (88), Expect = 1e-04
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAIC-AVFIQPECVNVPLYQQRMQQMQQHRSEKTAYS 70
L I ++ D+G Y+C + + FI + + + + A
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALM 127
Query: 71 NGS 73
+
Sbjct: 128 GQN 130
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 39.4 bits (92), Expect = 3e-05
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
+ Q L + S+ D G Y C + I
Sbjct: 51 IPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90
Score = 37.1 bits (86), Expect = 3e-04
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA 39
V++ G ++C A N G A
Sbjct: 141 GGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSR 175
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 39.7 bits (92), Expect = 3e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I S D G + C A N FG A ++
Sbjct: 254 LTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 35.5 bits (81), Expect = 0.001
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ + G YTC N +I P + +
Sbjct: 59 WIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLV 97
Score = 28.5 bits (63), Expect = 0.25
Identities = 4/35 (11%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGE 35
+P++G + + C A+ +
Sbjct: 139 FVPNPKAGI--TIKNVKRAYHRLCVRCAAQRDGTW 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 39.7 bits (92), Expect = 4e-05
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 3/72 (4%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
M + + + TC A N+ G A +V + V+ P Q ++
Sbjct: 204 MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVN---VSFPASVQLHTAVE 260
Query: 61 QHRSEKTAYSNG 72
H +G
Sbjct: 261 MHHWCIPFSVDG 272
Score = 39.0 bits (90), Expect = 7e-05
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
L ++ + G YT A N FG+A ++
Sbjct: 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMA 341
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 39.4 bits (92), Expect = 4e-05
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ----PECVNVPLYQQ 54
V++ D YTC A + G I P+ +
Sbjct: 256 RNVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTKHHHHH 303
Score = 37.9 bits (88), Expect = 2e-04
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
Q + L I+S D+G+Y C A N G
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRY 191
Score = 36.0 bits (83), Expect = 7e-04
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 5 PQSGNVGLVIDSIG-PGDEGEYTCCARNEFGEAICAVFIQ 43
+S L I + P DE Y C A+N GE +
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 39.0 bits (91), Expect = 4e-05
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + D G Y C A N G+
Sbjct: 78 LEVTPDSENDFGNYNCTAVNRIGQE 102
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 39.3 bits (91), Expect = 5e-05
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 1/57 (1%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRSEKTA 68
L + D G Y C RN ++ ++ N + + Q +
Sbjct: 83 LWLLPALQEDSGTYVCTTRNASYCDKMSIELRVF-ENTDAFLPFISYPQILTLSTSG 138
Score = 37.7 bits (87), Expect = 2e-04
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
G L++ + D G Y C +
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNI 210
Score = 35.0 bits (80), Expect = 0.002
Identities = 5/33 (15%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 12 LVIDSIGPGDEG-EYTCCARNEFGEAICAVFIQ 43
L+ D + D ++ C N ++
Sbjct: 300 LIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1, isoform 2; hydrolase, immunoglobulin domain,
nucleus, protease; 2.80A {Homo sapiens}
Length = 218
Score = 39.1 bits (91), Expect = 5e-05
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA 39
P L+ +++ D G Y C N F
Sbjct: 60 PNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQ 94
Score = 38.7 bits (90), Expect = 8e-05
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
++ + +G Y C N+
Sbjct: 160 THETKKLYMVPYVDLEHQGTYWCHVYNDRDSQ 191
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 38.7 bits (90), Expect = 5e-05
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
L I S+ D G+Y C +
Sbjct: 70 LRITSLQLSDTGQYQCLVFLGHQTFVSQPG 99
Score = 32.2 bits (73), Expect = 0.013
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICA 39
+ G ++C A N G
Sbjct: 157 QRSLHVPGLNKTSSFSCEAHNAKGVTTSR 185
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 37.5 bits (87), Expect = 6e-05
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I ++ P D G Y C N F +
Sbjct: 64 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 38.6 bits (90), Expect = 6e-05
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
L I + D G Y C A + G+ A
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATV 89
Score = 37.8 bits (88), Expect = 1e-04
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAIC 38
L I +I DEG Y C R E I
Sbjct: 153 LQILNINKSDEGIYRCEGRVEARGEID 179
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 38.9 bits (90), Expect = 6e-05
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 8 GNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
G V +VI + GEY ++E +
Sbjct: 101 GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS 136
Score = 38.9 bits (90), Expect = 7e-05
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAI 37
+ S+ D G YTC + ++
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQSA 317
Score = 38.1 bits (88), Expect = 1e-04
Identities = 5/47 (10%), Positives = 10/47 (21%), Gaps = 3/47 (6%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ GEY A N+ + + +
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN---IRRK 415
Score = 36.6 bits (84), Expect = 5e-04
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
++ CCA N G + + +
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 33.9 bits (77), Expect = 0.004
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ V + + CCARNE G +F
Sbjct: 185 EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFT 223
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 38.6 bits (89), Expect = 7e-05
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L ID + D+G YTC A + + F++
Sbjct: 173 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 32.1 bits (72), Expect = 0.017
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+S+D + G I S G C A+ ++I
Sbjct: 58 ISWDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYI 96
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance,
cell adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 38.7 bits (90), Expect = 7e-05
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAI 37
+ + D GEY C A+N G+A+
Sbjct: 66 ALFFYRTMQGKKEQDGGEYWCVAKNRVGQAV 96
Score = 38.7 bits (90), Expect = 8e-05
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
L+I ++ P DEG Y C A+N G +
Sbjct: 172 LLISNVEPIDEGNYKCIAQNLVGTRESS 199
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 38.6 bits (90), Expect = 8e-05
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
G L+I D G+Y C N GE V
Sbjct: 164 GGK--LMITYTRKSDAGKYVCVGTNMVGERESEV 195
Score = 34.4 bits (79), Expect = 0.002
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA 39
+V DEG Y C ARN GEA+
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSH 101
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 38.4 bits (88), Expect = 1e-04
Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHR 63
+ G+ +VI + D G Y C A ++ + + + + +
Sbjct: 284 QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQL-----FVNEESTIPRSP 338
Query: 64 SEKTAYSNGSQSIVSEYSG 82
+ + S +++ Y+
Sbjct: 339 TVVKGVAGSSVAVLCPYNR 357
Score = 36.5 bits (83), Expect = 4e-04
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQ 53
+VI+ + D G+Y C A ++ +Q L
Sbjct: 179 GTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVY 228
Score = 32.3 bits (72), Expect = 0.013
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
D S V L ++ + DEG Y C +
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHF 533
Score = 31.5 bits (70), Expect = 0.031
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHR 63
P++G + I + D G Y C V ++ L ++ + R
Sbjct: 69 FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGR 128
Query: 64 S 64
+
Sbjct: 129 T 129
Score = 30.4 bits (67), Expect = 0.085
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+P +G ++++ + D G Y C +
Sbjct: 400 EPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKI 439
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 37.8 bits (88), Expect = 1e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L ++ D G YTC N G
Sbjct: 399 LNFTNVTVQDTGMYTCMVSNSVGNT 423
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 37.9 bits (88), Expect = 2e-04
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + D G YTC A E
Sbjct: 303 LFFKKVQVEDGGVYTCYAMGETFNE 327
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 37.5 bits (87), Expect = 2e-04
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV 49
L I I DEG Y C R I IQ V V
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQ---VIV 191
Score = 37.1 bits (86), Expect = 2e-04
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA-----VFIQPECVNVP 50
+ L I + D G Y C E G A +F + N P
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 36.2 bits (84), Expect = 2e-04
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
L++ D GE+ C V
Sbjct: 67 LILPEAKVQDSGEFECRTEGVSAFFGVTV 95
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 37.4 bits (87), Expect = 2e-04
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + D G YTC N G +
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNS 433
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 36.2 bits (84), Expect = 3e-04
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPL 51
L I + D GEY+C E A V P
Sbjct: 64 LQIHDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGS 103
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 36.3 bits (83), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L ID + D+G YTC A + + F++
Sbjct: 76 LTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 37.0 bits (86), Expect = 3e-04
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + D G Y C A N G
Sbjct: 443 LEVRYAQVQDNGTYLCIAANAGGND 467
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 37.0 bits (85), Expect = 3e-04
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I S D G YTC + I
Sbjct: 244 LHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 33.9 bits (77), Expect = 0.004
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + ++ D GEY C + G
Sbjct: 53 LTLTNLTGLDTGEYFCTHNDSRGLE 77
Score = 30.1 bits (67), Expect = 0.089
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 7/41 (17%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
YD Q G G+ ++ Y C E +
Sbjct: 140 PYDHQRGFSGIF-------EDRSYICKTTIGDREVDSDAYY 173
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 36.5 bits (84), Expect = 3e-04
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
V S+ TC +N+ EA
Sbjct: 166 AVDLSLPKPWHLPVTCVGKNDKEEA 190
Score = 35.8 bits (82), Expect = 8e-04
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 5 PQSGNVG-LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+S N LV+ + +G Y C + E + V P
Sbjct: 61 HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS---VVKP 104
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 36.8 bits (84), Expect = 3e-04
Identities = 10/30 (33%), Positives = 11/30 (36%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
SG LVI + D G C GE
Sbjct: 210 SGARNLVIRAAKITDAGRVWCELATGQGEL 239
Score = 29.1 bits (64), Expect = 0.19
Identities = 7/69 (10%), Positives = 13/69 (18%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQHRS 64
L + + P D G Y C + + + V +
Sbjct: 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAE 144
Query: 65 EKTAYSNGS 73
Sbjct: 145 VVQVDEGND 153
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 35.4 bits (82), Expect = 4e-04
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
LV+ P D GE R +A V
Sbjct: 67 LVVREAAPSDAGEVVFSVRGLTSKASLIV 95
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 35.0 bits (81), Expect = 6e-04
Identities = 6/25 (24%), Positives = 7/25 (28%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L I D+ Y C E
Sbjct: 74 LTISQCSLADDAAYQCVVGGEKCST 98
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 36.2 bits (83), Expect = 6e-04
Identities = 9/50 (18%), Positives = 12/50 (24%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQ 61
L D G Y C RN + + L +Q
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113
Score = 35.5 bits (81), Expect = 0.001
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAV 40
L++ ++ G YTC A + +
Sbjct: 158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI 192
Score = 35.1 bits (80), Expect = 0.002
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 12 LVIDSIGPGD-EGEYTCCARNEFGEAICAVFIQP 44
L I I + +TC A+N G + +
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 35.0 bits (81), Expect = 6e-04
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
LVI + DEG+Y V +
Sbjct: 63 LVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 35.4 bits (81), Expect = 7e-04
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
M D +G + + ++ + DEG YT ++ + +
Sbjct: 87 MHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHSTLVL 128
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 35.8 bits (82), Expect = 7e-04
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 5/48 (10%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA-----VFIQPECVNV 49
N L ID I D GEY C N + P +
Sbjct: 160 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHHH 207
Score = 30.8 bits (69), Expect = 0.045
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 9 NVGLVIDSIGPGDEGEYTCCARNEFGE 35
N L+ I D G YT +E
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYR 96
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 34.8 bits (80), Expect = 8e-04
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 11 GLVIDSIGPG-----DEGEYTCCARNEFGEAI 37
L I G DEG Y C ARN GEA+
Sbjct: 68 SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAV 99
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 34.6 bits (80), Expect = 9e-04
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
L+I+ D EY+ A +V
Sbjct: 66 LIIEGATKADAAEYSVMTTGGQSSAKLSV 94
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 35.3 bits (81), Expect = 0.001
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
G L + + D G +TC + + I
Sbjct: 140 QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
Score = 33.0 bits (75), Expect = 0.006
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
GN L+I ++ D Y C ++ E VF
Sbjct: 63 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVF 99
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 34.7 bits (80), Expect = 0.001
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
LV+ G + GEY+C A +
Sbjct: 68 LVVQQAGQAEAGEYSCEAGGQQLSF 92
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 34.2 bits (79), Expect = 0.001
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L + +GP D+G Y A + +
Sbjct: 65 LTVREVGPADQGSYAVIAGSSKVKF 89
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 34.6 bits (80), Expect = 0.001
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPE 45
L I + D GEY C E A+ V P
Sbjct: 75 LQIRGLVAEDAGEYLCMCGKERTSAMLTVRAMPS 108
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 34.2 bits (79), Expect = 0.001
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L+ + D G Y EA
Sbjct: 69 LIFSDVVQEDRGRYQVITNGGQCEA 93
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 35.2 bits (80), Expect = 0.001
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
G L + + D G +TC + + I
Sbjct: 137 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA 182
Score = 34.0 bits (77), Expect = 0.004
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQ 53
GN L+I ++ D Y C ++ E VF + L Q
Sbjct: 62 WDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQ 110
Score = 30.9 bits (69), Expect = 0.039
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
++ L G T + G+ V +
Sbjct: 254 PLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290
Score = 24.4 bits (52), Expect = 9.0
Identities = 2/20 (10%), Positives = 6/20 (30%)
Query: 12 LVIDSIGPGDEGEYTCCARN 31
+ + G + C +
Sbjct: 330 EKAVWVLNPEAGMWQCLLSD 349
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 34.9 bits (80), Expect = 0.002
Identities = 6/40 (15%), Positives = 9/40 (22%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
N L I G Y C + + +
Sbjct: 125 KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164
Score = 34.1 bits (78), Expect = 0.003
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
++ + I + D G Y C A E G
Sbjct: 219 RNTSSEYQILTARREDSGLYWCEAATEDG 247
Score = 28.7 bits (64), Expect = 0.21
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARN 31
Q+ I S D GEY C
Sbjct: 44 QTSTPSYRITSASVNDSGEYRCQRGL 69
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 33.8 bits (78), Expect = 0.002
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
LV+ ++ P D G Y+C ++ A
Sbjct: 65 LVVRNLRPQDSGRYSCSFGDQTTSA 89
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 34.8 bits (79), Expect = 0.002
Identities = 6/39 (15%), Positives = 10/39 (25%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
D + I G YT E ++ +
Sbjct: 139 DVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASAST 177
Score = 30.6 bits (68), Expect = 0.061
Identities = 5/36 (13%), Positives = 9/36 (25%), Gaps = 1/36 (2%)
Query: 5 PQSGNVG-LVIDSIGPGDEGEYTCCARNEFGEAICA 39
P N L + + G Y ++
Sbjct: 46 PHENNTATLTVADATSENAGSYKVTVQDTDTMTSVE 81
Score = 29.0 bits (64), Expect = 0.23
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
L +S D ++ C A+ V +
Sbjct: 260 LFKESATYDDTAKFWCVAKLYQQIEDETVEV 290
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 34.8 bits (79), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 12 LVIDSIGPGDEG-EYTCCARNEFGEAICAVFIQ 43
L I + D Y C AR+ GE A ++
Sbjct: 298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
Score = 33.7 bits (76), Expect = 0.005
Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 4/51 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICA----VFIQPECVNVPLYQQRMQQ 58
L D G YTC RN + A V + C N P+ +
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKL 131
Score = 30.6 bits (68), Expect = 0.065
Identities = 5/23 (21%), Positives = 6/23 (26%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L + G YTC
Sbjct: 179 LSFLIALISNNGNYTCVVTYPEN 201
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 34.6 bits (79), Expect = 0.002
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
G I S+ D G+Y C + ++
Sbjct: 61 QLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVK 100
Score = 30.0 bits (67), Expect = 0.069
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 16 SIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ P ++C N + + + I P P
Sbjct: 163 RLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEP 197
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 33.9 bits (77), Expect = 0.002
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
L + ++ EG Y C N FG +
Sbjct: 78 LRLRNVEFTSEGXYQCVISNHFGSSYSVXA 107
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 34.0 bits (78), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44
LV+ ++ D GEY C +E V P
Sbjct: 70 LVLPAVQLEDSGEYLCEIDDESASFTVTVTEPP 102
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 33.7 bits (77), Expect = 0.002
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 12 LVIDSIGPGDEG-EYTCCARNEFGE--AICAVFIQPECVNVP 50
L I +I D Y C A N FG I + Q ++ P
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 33.4 bits (77), Expect = 0.002
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L++ + G GE + A N A
Sbjct: 62 LILHNCQLGMTGEVSFQAANTKSAA 86
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 33.8 bits (77), Expect = 0.003
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGP-GDEGEYTCCARNEFGEAICAVFIQ 43
G L I+++ D G+Y C + G + ++
Sbjct: 137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
Score = 33.8 bits (77), Expect = 0.003
Identities = 9/41 (21%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 11 GLVIDSIGPGDEGEYTCCARNE-FGEAICAVFIQPECVNVP 50
GEY+C E G A + P V
Sbjct: 50 KTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVK 90
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 33.1 bits (76), Expect = 0.004
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAV 40
L I ++ D YTC A V
Sbjct: 65 LTISALEKADSDTYTCDIGQAQSRAQLLV 93
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 33.7 bits (77), Expect = 0.004
Identities = 3/38 (7%), Positives = 11/38 (28%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ ++ ++ C A N+ + +
Sbjct: 140 HLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESSVEPV 177
Score = 30.6 bits (69), Expect = 0.052
Identities = 6/37 (16%), Positives = 11/37 (29%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
N L I + D+ Y + G+ +
Sbjct: 63 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFD 99
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 33.3 bits (76), Expect = 0.005
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV 49
+++ D GEY C A N G A + ++ V V
Sbjct: 156 NIVNLQITEDPGEYECNATNSIGSASVSTVLR---VRV 190
Score = 33.3 bits (76), Expect = 0.006
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
+ N+ I+ D GEY C + I+ V
Sbjct: 52 NASNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIE---VKAA 92
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 33.6 bits (76), Expect = 0.005
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L+I + D G Y C +
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRI 208
Score = 32.1 bits (72), Expect = 0.014
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGE-YTCCARNEFGEAICAVFIQ 43
++ L +++ G YTC N + + +
Sbjct: 284 LTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
Score = 29.0 bits (64), Expect = 0.22
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 12 LVIDSIGPGDEGE-YTCCARNEFGEAI 37
L I + D Y C + G+ +
Sbjct: 91 LWIANYTSNDSHRRYLCTVTTKNGDCV 117
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 32.4 bits (74), Expect = 0.005
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L I++ D+ EY A +E
Sbjct: 65 LFINNCQMTDDSEYYVTAGDEKCST 89
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 33.6 bits (76), Expect = 0.006
Identities = 7/30 (23%), Positives = 7/30 (23%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
I G Y C A N G
Sbjct: 281 QNRTLFFKGPINYSLAGTYICEATNPIGTR 310
Score = 29.3 bits (65), Expect = 0.16
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGE 35
P + + + + DEG Y C
Sbjct: 87 PSFTDGTIRLSRLELEDEGVYICEFATFPTG 117
Score = 24.3 bits (52), Expect = 8.9
Identities = 1/25 (4%), Positives = 3/25 (12%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
+ + C
Sbjct: 196 YRLVPSREAHQQSLACIVNYHMDRF 220
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 32.8 bits (74), Expect = 0.008
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
L+I + C N G
Sbjct: 270 LLIRPVDKPINTTLICNVTNALGAR 294
Score = 30.5 bits (68), Expect = 0.057
Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 5/52 (9%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICA-----VFIQPECVNVP 50
+ N L + + DEG YTC + V +P+
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV 124
Score = 25.1 bits (54), Expect = 5.0
Identities = 5/25 (20%), Positives = 8/25 (32%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEA 36
++ D TC +E E
Sbjct: 179 WILVPSSQVDGKNVTCKVEHESFEK 203
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.1 bits (72), Expect = 0.009
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
L I + GD G Y + + C I V P
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNID---VEAP 117
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 32.0 bits (73), Expect = 0.010
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQP 44
L + + D G A ++ A V +P
Sbjct: 72 LTLRQLALKDSGTIYFEAGDQRASAALRVTEKP 104
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 32.1 bits (73), Expect = 0.011
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTC 27
S D +SG+ + + ++ D G Y C
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQC 106
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 32.5 bits (73), Expect = 0.014
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 16 SIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
++ EG Y C AR+ GE V + V P
Sbjct: 419 TVTRDLEGTYLCRARSTQGEVTREVTVN---VLSP 450
Score = 27.9 bits (61), Expect = 0.49
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
P L++ + + ++C A E
Sbjct: 321 QPLGPRAQLLLKATPEDNGRSFSCSATLEVA 351
Score = 27.1 bits (59), Expect = 1.0
Identities = 7/82 (8%), Positives = 17/82 (20%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQQ 61
+ V + ++C + +F Q
Sbjct: 134 PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ 193
Query: 62 HRSEKTAYSNGSQSIVSEYSGA 83
S + + ++V G
Sbjct: 194 LVSPRVLEVDTQGTVVCSLDGL 215
Score = 24.4 bits (52), Expect = 9.4
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 4/60 (6%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ----PECVNVPLYQQRMQQMQQ 61
GN V + ++ + C + G++ F+ PE V + +
Sbjct: 44 LPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKN 103
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 32.4 bits (73), Expect = 0.014
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAI 37
+ + D G+Y C R E G I
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGI 250
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 31.4 bits (71), Expect = 0.017
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTC 27
+ D G+V L+I ++ D G Y C
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCC 89
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 31.7 bits (71), Expect = 0.019
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARN 31
+ D Q N L I D G Y
Sbjct: 73 LLGDVQKKNCSLSIGDARMEDTGSYFFRVER 103
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 31.1 bits (70), Expect = 0.022
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNE 32
DP + +VI ++ D G +TC +N
Sbjct: 75 DPSWKDGSIVIHNLDYSDNGTFTCDVKNP 103
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 31.4 bits (70), Expect = 0.025
Identities = 7/32 (21%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 6 QSGNVGLVIDSIGPG-DEGEYTCCARNEFGEA 36
S L + G Y C R E
Sbjct: 162 GSDEDHLSLKEFSELEQSGYYVCYPRGSKPED 193
Score = 28.7 bits (63), Expect = 0.25
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 7 SGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
+ S G Y C + + +
Sbjct: 46 EDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYY 80
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 31.6 bits (71), Expect = 0.026
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 16 SIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVP 50
++ EG Y C AR+ GE V + V P
Sbjct: 234 TVTRDLEGTYLCRARSTQGEVTREVTVN---VLSP 265
Score = 24.2 bits (52), Expect = 8.4
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFG 34
P L++ + + ++C A E
Sbjct: 136 QPLGPRAQLLLKATPEDNGRSFSCSATLEVA 166
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 31.0 bits (70), Expect = 0.028
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGE 35
N + I + D G Y C + +
Sbjct: 129 YWYENHNISITNATVEDSGTYYCTGKVWQLD 159
Score = 27.9 bits (62), Expect = 0.39
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 12 LVIDSIGPGDEGEYTCCARN 31
L I + D GEY C +
Sbjct: 53 LNIVNAKFEDSGEYKCQHQQ 72
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 30.9 bits (70), Expect = 0.031
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE 35
I G+Y C +
Sbjct: 136 FSIPQANHSHSGDYHCTGNIGYTL 159
Score = 27.9 bits (62), Expect = 0.46
Identities = 6/20 (30%), Positives = 6/20 (30%)
Query: 12 LVIDSIGPGDEGEYTCCARN 31
D GEYTC
Sbjct: 53 SYRFKANNNDSGEYTCQTGQ 72
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 30.7 bits (69), Expect = 0.043
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTC 27
+ G V L I ++ DEG YTC
Sbjct: 76 LKESIGEGKVALRIQNVRFSDEGGYTC 102
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 30.3 bits (68), Expect = 0.046
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
G+V L I++ D G Y C
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCC 90
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 29.9 bits (67), Expect = 0.061
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
Q G V L I + GD G Y C
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCC 90
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 29.9 bits (67), Expect = 0.062
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
+ GNV L I++ GD G Y C
Sbjct: 68 NISEGNVSLTIENTVVGDGGPYCC 91
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB:
3uro_R 3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 30.0 bits (67), Expect = 0.071
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
+ + L + + DEG YTC
Sbjct: 72 GAELRDASLRMFGLRVEDEGSYTC 95
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.1 bits (67), Expect = 0.078
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
+G L I ++ D G+Y C
Sbjct: 77 GITAGKAALRIHNVTASDSGKYLC 100
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 30.4 bits (67), Expect = 0.080
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCAR-NEFGEAICAVFIQPE 45
QS N L I+++ G Y C A+ + + PE
Sbjct: 548 QSPNCILFIENLTAQQYGHYFCEAQEGSYFREAQHWQLLPE 588
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 30.0 bits (67), Expect = 0.083
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
+ N+ +VI ++ P DEG Y C
Sbjct: 62 TNNLSIVILALRPSDEGTYEC 82
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 29.4 bits (66), Expect = 0.092
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNV 49
+ L++ + P D G Y R E ++ + ++ V V
Sbjct: 73 NMDHKVCNLLLKDLKPEDSGTYNF--RFEISDSNRWLDVKGTTVTV 116
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune
system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 29.6 bits (66), Expect = 0.100
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
GN L I + D G Y C
Sbjct: 74 QLSLGNAALQITDVKLQDAGVYRC 97
Score = 26.9 bits (59), Expect = 0.95
Identities = 4/28 (14%), Positives = 6/28 (21%)
Query: 16 SIGPGDEGEYTCCARNEFGEAICAVFIQ 43
I + C R E +
Sbjct: 181 RINTTTNEIFYCTFRRLDPEENHTAELV 208
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 29.1 bits (65), Expect = 0.14
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
DPQ+ N L I D G Y
Sbjct: 82 DPQTKNCTLSIRDARMSDAGRYFF 105
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 28.8 bits (64), Expect = 0.20
Identities = 11/41 (26%), Positives = 13/41 (31%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPEC 46
S V E +YTC A N +V Q C
Sbjct: 152 SSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQKLC 192
Score = 25.3 bits (55), Expect = 3.8
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
+ + L + ++ D G Y
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRA 87
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 28.8 bits (64), Expect = 0.21
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
L I ++ D G Y + G I +
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALD 94
Score = 24.9 bits (54), Expect = 5.0
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 1/26 (3%)
Query: 21 DEGEYTCCARNEFGEAICAVFIQ-PE 45
+ C A N + + PE
Sbjct: 151 LRAPFKCKAVNRVSQESEMEVVNCPE 176
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 28.7 bits (64), Expect = 0.24
Identities = 6/31 (19%), Positives = 6/31 (19%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGE 35
N I D G Y C
Sbjct: 132 YFHHNSDFYIPKATLKDSGSYFCRGLVGSKN 162
Score = 27.2 bits (60), Expect = 0.72
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 12 LVIDSIGPGDEGEYTCCARN 31
ID+ D GEY C +
Sbjct: 56 YFIDAATVDDSGEYRCQTQL 75
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 29.0 bits (63), Expect = 0.27
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 11 GLVIDSIGPGDEGEYTCCARNE 32
L+I ++ GD G Y C +
Sbjct: 587 NLLIFNLSEGDSGVYQCLSEER 608
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 28.3 bits (63), Expect = 0.28
Identities = 5/24 (20%), Positives = 5/24 (20%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE 35
I D G Y C
Sbjct: 139 FHIPKATLKDSGSYFCRGLVGSKN 162
Score = 27.9 bits (62), Expect = 0.39
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 12 LVIDSIGPGDEGEYTCCARN 31
ID+ D GEY C
Sbjct: 56 YFIDAATVNDSGEYRCQTNL 75
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 28.0 bits (62), Expect = 0.29
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
DPQSG L I + D Y + G
Sbjct: 69 DPQSGA--LYISKVQKEDNSTYIMRVLKKTGNEQEWKI 104
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 28.2 bits (62), Expect = 0.31
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
+ + I ++ DEGEYTC
Sbjct: 100 PHELSISISNVALADEGEYTC 120
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 27.7 bits (61), Expect = 0.47
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
+SG+ L + I + GEY C
Sbjct: 76 RLKSGDASLRLPGIQLEEAGEYRC 99
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 27.9 bits (62), Expect = 0.49
Identities = 11/87 (12%), Positives = 26/87 (29%)
Query: 1 MSYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQPECVNVPLYQQRMQQMQ 60
+Y N+ +++ ++ D G Y C ++ V +
Sbjct: 70 DTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKD 129
Query: 61 QHRSEKTAYSNGSQSIVSEYSGAILVM 87
+ + +QS VS + +
Sbjct: 130 AAKKDGAQKVTQAQSSVSMPVRKAVTL 156
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1;
immunoglobulin superfamily, integrin-binding, cell
adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3
b.1.1.4 PDB: 1ij9_A 1vsc_A
Length = 202
Score = 27.8 bits (61), Expect = 0.51
Identities = 7/38 (18%), Positives = 16/38 (42%)
Query: 6 QSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+ L ++ + G+E Y C A E + + ++
Sbjct: 50 EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE 87
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 27.2 bits (60), Expect = 0.56
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
+GL + S+ D GEY C
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFC 88
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 27.5 bits (60), Expect = 0.58
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 12 LVIDSIGPGDEGEYTC 27
LV+ GDE +Y C
Sbjct: 79 LVLAEAQVGDERDYVC 94
>2pnd_A V-SET and immunoglobulin domain containing 4; complement
receptor, IG-like domain, immune system; 1.00A {Mus
musculus} PDB: 2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 27.2 bits (60), Expect = 0.59
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
G+V L I+++ D YTC
Sbjct: 72 HKVPGDVSLQINTLQMDDRNHYTC 95
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 27.1 bits (60), Expect = 0.60
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
S + L + ++ D+G Y C
Sbjct: 66 SDSWTLRLHNLQIKDKGLYQC 86
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 27.1 bits (59), Expect = 0.83
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNE 32
L + + P D G Y C
Sbjct: 87 ANLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 27.3 bits (59), Expect = 0.87
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEA 36
+ P +GN + + P EG Y + +
Sbjct: 246 PWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQG 280
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL;
2.80A {Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 26.7 bits (58), Expect = 0.94
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L + + P D G Y C A +
Sbjct: 75 LHFEPVLPNDNGSYRCSANFQSN 97
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 26.5 bits (58), Expect = 1.00
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 7 SGNVGLVIDSIGPGDEGEYTC 27
+ + + + ++ DEG Y C
Sbjct: 63 ANQLSITVPNVTLQDEGVYKC 83
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 27.1 bits (59), Expect = 1.0
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAIC-AVFIQPECVNV 49
L++ S+ D G Y+C + V + PE +
Sbjct: 52 PSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQL 100
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction
immunology, IGSF, cell SU receptor signalling,
glycosylation, membrane protein; HET: NAG; 2.90A {Homo
sapiens}
Length = 118
Score = 25.9 bits (57), Expect = 1.5
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTC 27
+ N L + + DEG YTC
Sbjct: 73 GAELRNASLRMFGLRVEDEGNYTC 96
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 25.6 bits (55), Expect = 2.1
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L I D G Y+C
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQ 103
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 25.9 bits (57), Expect = 2.3
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
I + G+Y+C R
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGEL 81
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 25.6 bits (56), Expect = 2.4
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 12 LVIDSIGPGDEGEYTC 27
+ + + DEG+YTC
Sbjct: 73 ISVSDVSLSDEGQYTC 88
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex,
immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Length = 115
Score = 25.2 bits (56), Expect = 2.5
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 7 SGNVG-LVIDSIGPGDEGEYTCCARNEFGEAICAVF 41
SG L I +I P DE Y C + E VF
Sbjct: 72 SGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVF 107
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 24.8 bits (53), Expect = 4.1
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 6 QSGNVGLVIDSIGPGDE-GEYTCCARNEFGEAICAVFIQPECVN 48
G+ L +D G YTC E + ++ V+
Sbjct: 74 LKGDASLKMDKSDAVSHTGNYTCEVTELTREGETIIELKYRVVS 117
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system;
2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 24.8 bits (54), Expect = 4.7
Identities = 7/23 (30%), Positives = 8/23 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
VID + G Y C R
Sbjct: 66 FVIDHMDANKAGRYQCQYRIGHY 88
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 24.8 bits (54), Expect = 5.4
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNE 32
D +G L I ++ D G+Y +E
Sbjct: 65 DKTNGA--LRIYNVSKEDRGDYYMRMLHE 91
Score = 24.5 bits (53), Expect = 6.7
Identities = 3/38 (7%), Positives = 7/38 (18%)
Query: 5 PQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ + C A N + +
Sbjct: 140 HLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 177
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 24.9 bits (54), Expect = 5.7
Identities = 5/23 (21%), Positives = 8/23 (34%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
I + G+Y+C R
Sbjct: 62 FYIPDMNSRMAGQYSCIYRVGEL 84
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 24.6 bits (53), Expect = 5.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 2 SYDPQSGNVGLVIDSIGPGDEGEYTC 27
+ + + L + + DEG YTC
Sbjct: 85 DTEAELQDATLALHGLTVEDEGNYTC 110
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 24.5 bits (53), Expect = 6.2
Identities = 3/32 (9%), Positives = 7/32 (21%)
Query: 11 GLVIDSIGPGDEGEYTCCARNEFGEAICAVFI 42
+ + C A N + +
Sbjct: 136 QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
Score = 24.1 bits (52), Expect = 8.7
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE 35
L I ++ DE EY + N
Sbjct: 62 LTIYNLTSSDEDEYEMESPNITDT 85
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 24.5 bits (52), Expect = 6.9
Identities = 5/40 (12%), Positives = 9/40 (22%)
Query: 4 DPQSGNVGLVIDSIGPGDEGEYTCCARNEFGEAICAVFIQ 43
+G L + + G C V +
Sbjct: 53 QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL 92
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 24.4 bits (53), Expect = 7.0
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
I S+ G Y C R+ G
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVG 82
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion;
2.40A {Homo sapiens}
Length = 184
Score = 24.4 bits (53), Expect = 7.7
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFG 34
L I ++ G Y C +N
Sbjct: 54 LFIPAMKRSLAGRYRCSYQNGSL 76
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 24.4 bits (52), Expect = 8.3
Identities = 4/24 (16%), Positives = 6/24 (25%)
Query: 12 LVIDSIGPGDEGEYTCCARNEFGE 35
+ + G Y C E
Sbjct: 155 WNLGNNAKDPRGTYQCQGAKETSN 178
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1;
immunoglobulin-like folds, immune system; 1.80A {Homo
sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A
1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 24.0 bits (52), Expect = 8.6
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 12 LVIDSIGPGDEGEYTCCARNE 32
I SI G Y C ++
Sbjct: 60 FPIPSITWEHTGRYRCYYGSD 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.384
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,365,396
Number of extensions: 64874
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 560
Number of HSP's successfully gapped: 352
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.9 bits)