BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2159
(194 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 244 bits (623), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 118/187 (63%), Positives = 139/187 (74%)
Query: 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67
F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++ + F
Sbjct: 22 FSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 81
Query: 68 TTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILI 127
TT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK E VPILI
Sbjct: 82 TTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETISNVPILI 141
Query: 128 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187
LGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKRQG+G GFR
Sbjct: 142 LGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGYGEGFR 201
Query: 188 WLANYID 194
WL+ YID
Sbjct: 202 WLSQYID 208
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/191 (60%), Positives = 141/191 (73%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXV 123
+ FTT DLGGH+QARRVW++Y PA++ IVF++D +D R ESK E V
Sbjct: 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 239 bits (609), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 114/189 (60%), Positives = 139/189 (73%)
Query: 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65
+ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++ +
Sbjct: 7 SGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 66
Query: 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPI 125
FTT DLGGH+QARRVW++Y PA++ IVF++D +D R ESK E VPI
Sbjct: 67 TFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 126
Query: 126 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185
LILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G G
Sbjct: 127 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 186
Query: 186 FRWLANYID 194
FRW+A YID
Sbjct: 187 FRWMAQYID 195
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 235 bits (600), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 113/189 (59%), Positives = 138/189 (73%)
Query: 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65
+ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++ +
Sbjct: 1 SGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 60
Query: 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPI 125
FTT DLGG +QARRVW++Y PA++ IVF++D +D R ESK E VPI
Sbjct: 61 TFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI 120
Query: 126 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185
LILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G G
Sbjct: 121 LILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 180
Query: 186 FRWLANYID 194
FRW+A YID
Sbjct: 181 FRWMAQYID 189
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/192 (55%), Positives = 133/192 (69%), Gaps = 5/192 (2%)
Query: 2 FEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELS 61
++I+ FR+VL LGLW K GKLLFLGLDNAGKT LL MLKNDR A PT HPTSEEL+
Sbjct: 4 WDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 63
Query: 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXX 121
+G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+D RF E++ E
Sbjct: 64 IGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELK 123
Query: 122 XVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181
VP +ILGNKID +A SE E+R GL TTG + I RP+E+FMCSV+ R G
Sbjct: 124 DVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQ----RIEGQRPVEVFMCSVVMRNG 178
Query: 182 FGNGFRWLANYI 193
+ F+WL+ YI
Sbjct: 179 YLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 189 bits (480), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 118/171 (69%), Gaps = 5/171 (2%)
Query: 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81
GKLLFLGLDNAGKT LL MLKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+
Sbjct: 2 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 61
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASED 141
W+DYFP V+ IVF++DA+D RF E++ E VP +ILGNKID +A SE
Sbjct: 62 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 121
Query: 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192
E+R GL TTG + I RP+E+FMCSV+ R G+ F+WL+ Y
Sbjct: 122 ELRSALGLLN-TTGSQ----RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT LL+ L ++ + PT + + D+GG + R W
Sbjct: 19 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 78
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF D ++++ID++DR RF E+ E VP+LI NK D+ AA E
Sbjct: 79 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE 138
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194
+ L+ ++ R ++ CS L +G +G W+ ++
Sbjct: 139 IAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 178
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 12/172 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT LL+ L ++ + PT + + D+GG + R W
Sbjct: 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 77
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF D ++++ID++DR RF E+ E VP+LI NK D+ AA E
Sbjct: 78 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE 137
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194
+ L+ ++ R ++ CS L +G +G W+ ++
Sbjct: 138 IAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT LL+ L ++ + PT + + D+GG + R W
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYW 65
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF D ++++ID++DR RF E+ E VP+LI NK D+ AA E
Sbjct: 66 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE 125
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ L+ ++ R ++ CS L +G +G W+ +
Sbjct: 126 IAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT LL+ L ++ + PT + + D+GG + R W
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGLRKIRPYW 65
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF D ++++ID++DR RF E+ E VP+LI NK D+ AA E
Sbjct: 66 RSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASE 125
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ L+ ++ R ++ CS L +G +G W+ +
Sbjct: 126 IAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 164
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR Y+ + ++F++D++DRSR E++ L+ NK D+ +A
Sbjct: 75 RSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
S E+ GL+ ++ RP + +G G WL+N +
Sbjct: 135 SAAEITEKLGLHS------------IRNRPWFIQATCATSGEGLYEGLEWLSNCL 177
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 80/175 (45%), Gaps = 12/175 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR Y+ + ++F++D++DRSR E++ L+ NK D+ +A
Sbjct: 75 RSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
S E+ GL+ ++ RP + +G G WL+N +
Sbjct: 135 SAAEITEKLGLHS------------IRNRPWFIQATCATSGEGLYEGLEWLSNSL 177
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ + ++F++D++DRSR E++ L+ NK D+ +A S E
Sbjct: 62 RHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ GL+ ++ RP + +G G WL+N +
Sbjct: 122 ITEKLGLHS------------IRNRPWFIQATCATSGEGLYEGLEWLSNSL 160
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 83.2 bits (204), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 12/173 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR Y+ + ++F+ID++DRSR E++ L+ NK D+ +A
Sbjct: 75 RSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
S E+ GL+ ++ RP + +G G WL+N
Sbjct: 135 SAAEITEKLGLHS------------IRNRPWFIQSTCATSGEGLYEGLEWLSN 175
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76
L KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG
Sbjct: 13 LGKKEMRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ R +WR Y+ AI+F++D++DR R E++ E +L+ NK D+
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 137 AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
A S EV GL + K + C+ G G WLA+
Sbjct: 133 AMSISEVTEKLGLQTIKNRKWYCQTS-----------CAT-NGDGLYEGLDWLAD 175
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG R W
Sbjct: 4 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 63
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ DA+++++D+ DR R SK E +++ NK D+ A + E
Sbjct: 64 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTPSE 123
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ + GL L+ R ++F S K G WL
Sbjct: 124 MANALGLPA------------LKDRKWQIFKTSATKGTGLDEAMEWL 158
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGH 75
GL K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG
Sbjct: 317 GLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQ 376
Query: 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIF 135
+ R +WR Y+ ++F++D +DR R E++ E ILI NK D+
Sbjct: 377 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436
Query: 136 DAASEDEVRHFFGL 149
DA E++ GL
Sbjct: 437 DAMKPHEIQEKLGL 450
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 18 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 77
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR YF ++F++D++DR R E++ E +L+ NK D+ +A
Sbjct: 78 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 137
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--NGFRWLANYI 193
+ E+ GL+ L R ++ S G G G WL+N I
Sbjct: 138 NAAEITDKLGLHSL--------------RQRHWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L +K +PT+ E + +I FT D+GG +
Sbjct: 15 KKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR Y+ D ++F++D++DR R +++ E IL+ NK D+ +A
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--NGFRWLANYID 194
S EV L +R F+ S +G G GF WL +++
Sbjct: 135 SAAEVTEKLHLN--------------TIRERNWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 222
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR YF ++F++D++DR R E++ E +L+ NK D+ +A
Sbjct: 223 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 282
Query: 139 SEDEVRHFFGLYGL 152
+ E+ GL+ L
Sbjct: 283 NAAEITDKLGLHSL 296
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR YF ++F++D++DR R E++ E +L+ NK D+ +A
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 134
Query: 139 SEDEVRHFFGLYGL 152
+ E+ GL+ L
Sbjct: 135 NAAEITDKLGLHSL 148
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 14 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 73
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR YF ++F++D++DR R E++ E +L+ NK D+ +A
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM 133
Query: 139 SEDEVRHFFGLYGL 152
+ E+ GL+ L
Sbjct: 134 NAAEITDKLGLHSL 147
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG R W
Sbjct: 6 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 65
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ DA+++++D+ DR R SK E +++ NK D+ A + E
Sbjct: 66 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSE 125
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ + GL L+ R ++F S K G WL
Sbjct: 126 MANSLGLPA------------LKDRKWQIFKTSATKGTGLDEAMEWL 160
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAAS 139
+WR Y+ ++F++D +DR R E++ E ILI NK D+ DA
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 140 EDEVRHFFGL 149
E++ GL
Sbjct: 132 PHEIQEKLGL 141
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 16/178 (8%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLK--NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K +L LGLDN+GKT ++ LK N ++ +PT+ + E+ + FT D+ G +
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGR 79
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXX--XXXXXVPILILGNKIDIF 135
R +W Y+ AI+F+ID+SDR R +K E +PIL NK+D+
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 136 DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
DA + +V L E ++ +P + +K +G G WL + I
Sbjct: 140 DAVTSVKVSQLLCL------------ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R
Sbjct: 11 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 70
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAAS 139
+WR Y+ ++F++D +DR R E++ E ILI NK D+ DA
Sbjct: 71 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 130
Query: 140 EDEVRHFFGL 149
E++ GL
Sbjct: 131 PHEIQEKLGL 140
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ ++F++D +DR R E++ E ILI NK D+ DA E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 143 VRHFFGL 149
++ GL
Sbjct: 122 IQEKLGL 128
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R +W
Sbjct: 2 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ ++F++D +DR R E++ E ILI NK D+ DA E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 121
Query: 143 VRHFFGL 149
++ GL
Sbjct: 122 IQEKLGL 128
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 67/127 (52%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R +W
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ ++F++D +DR R E++ E ILI NK D+ DA E
Sbjct: 62 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHE 121
Query: 143 VRHFFGL 149
++ GL
Sbjct: 122 IQEKLGL 128
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 67/130 (51%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIR 71
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAAS 139
+WR Y+ ++F++D +DR R E++ E ILI NK D+ DA
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 140 EDEVRHFFGL 149
E++ GL
Sbjct: 132 PHEIQEKLGL 141
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT +L L +PT+ E L +I F DLGG R W
Sbjct: 24 RVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYW 83
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF DA+++++D++DR R +K+E +LI NK D+ DAASE E
Sbjct: 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAE 143
Query: 143 VRHFFGL 149
+ G+
Sbjct: 144 IAEQLGV 150
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 16/175 (9%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKI 86
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +WR YF ++F++D++DR R ES E +L+ NK D+ +A
Sbjct: 87 RPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM 146
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--NGFRWLAN 191
E+ GL +R ++ + QG G +G WL++
Sbjct: 147 PVSELTDKLGLQ--------------HLRSRTWYVQATCATQGTGLYDGLDWLSH 187
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R +W
Sbjct: 4 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 63
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ ++F++D +DR R E++ E ILI NK D+ DA E
Sbjct: 64 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 123
Query: 143 VRHFFGL 149
++ GL
Sbjct: 124 IQEKLGL 130
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R YF ++F++D++DR R E++ E +L+ NK D+ +A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ GL+ L+ R + G G WL+N +
Sbjct: 122 ITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG + R +W
Sbjct: 5 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLW 64
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ ++F++D +DR R E++ E ILI NK D+ DA E
Sbjct: 65 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHE 124
Query: 143 VRHFFGL 149
++ GL
Sbjct: 125 IQEKLGL 131
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 14/179 (7%)
Query: 17 LW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGG 74
LW K ++L LGLD AGKT +L L+ PT+ E LS ++ DLGG
Sbjct: 12 LWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGG 71
Query: 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R WR Y+ A++F++D++D+ R + E +L+ NK D
Sbjct: 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
A S EV KE E L+ R + S +K +G G WL + I
Sbjct: 132 PGALSASEV-----------SKELNLVE-LKDRSWSIVASSAIKGEGITEGLDWLIDVI 178
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 15 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRI 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAA 138
R +W+ YF ++F++D++DR R E E +L+ NK D+ +A
Sbjct: 75 RPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--NGFRWLAN 191
+ E+ GL L R ++ + QG G G WL+N
Sbjct: 135 AISEMTDKLGLQSL--------------RNRTWYVQATCATQGTGLYEGLDWLSN 175
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 12/173 (6%)
Query: 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80
S ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRP 61
Query: 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASE 140
+WR YF ++F++D++DR R E++ E +L+ NK D+ +A +
Sbjct: 62 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA 121
Query: 141 DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E+ GL+ L+ R + G G WL+N +
Sbjct: 122 AEITDKLGLHS------------LRHRNWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 73/167 (43%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG R W
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYW 68
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R Y+ DA+++++D+ DR R SK E +++ NK D A + E
Sbjct: 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAILVVFANKQDXEQAXTSSE 128
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ GL L+ R ++F S K G WL
Sbjct: 129 XANSLGL------------PALKDRKWQIFKTSATKGTGLDEAXEWL 163
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG R W
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSW 77
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
Y+ + I+ ++D+ DR R +K E +LI NK D+ + E
Sbjct: 78 NTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCMTAAE 137
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + L ++ P + C L +G G W+ + I
Sbjct: 138 ISKYLTLSS------------IKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG R W
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 77
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
Y+ + ++ ++D++DR R ++ E +LI NK D+ + + E
Sbjct: 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 137
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ F L ++ + C L +G G W+
Sbjct: 138 ISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG R W
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 77
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
Y+ + ++ ++D++DR R ++ E +LI NK D+ + + E
Sbjct: 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 137
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ F L ++ + C L +G G W+
Sbjct: 138 ISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWM 172
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG R W
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 82
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
Y+ + ++ ++D++DR R ++ E +LI NK D+ + + E
Sbjct: 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 142
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ F L ++ + C L +G G W+
Sbjct: 143 ISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWM 177
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 12/167 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG R W
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSW 83
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
Y+ + ++ ++D++DR R ++ E +LI NK D+ + + E
Sbjct: 84 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAE 143
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
+ F L ++ + C L +G G W+
Sbjct: 144 ISQFLKLTS------------IKDHQWHIQACCALTGEGLCQGLEWM 178
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+LL LGLDNAGKT +L+ + PTL + L D+GG R W
Sbjct: 18 RLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 77
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R+YF + D +++++D++DR R + + E +LI NK D+ A S +
Sbjct: 78 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNA 137
Query: 143 VRHFFGL 149
+R L
Sbjct: 138 IREVLEL 144
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHV 76
WK+ +L +GL +GKT + ++ + + + M PT+ +++ G++ D+GG
Sbjct: 28 WKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQP 87
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ R +W Y V AIV+++DA+D+ + SK E +P+L+LGNK D+
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 147
Query: 137 AASEDEVRHFFGLYGL 152
A E E+ L +
Sbjct: 148 ALDEKELIEKMNLSAI 163
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K+ +L +GL +GKT + ++ + + ++ M PT+ +++ G++ D+GG +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPR 79
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDA 137
R +W Y V+AIV++IDA+DR + S+ E +P+L+LGNK D+ +A
Sbjct: 80 FRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNA 139
Query: 138 ASEDEVRHFFGLYGL 152
E ++ L +
Sbjct: 140 LDEKQLIEKMNLSAI 154
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 80/184 (43%), Gaps = 20/184 (10%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLK-NDRTAQHM-PTLHPTSEELSMGDIVFTTHDL 72
+G K +++ GLDN+GKT ++ +K +++H+ T+ E G + FT D+
Sbjct: 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDM 70
Query: 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXX-------XXXXVPI 125
GG + R +W Y+ +DA++F++D+SD R K E VP
Sbjct: 71 GGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF 130
Query: 126 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185
L NK+D A + E+ L L + P +F + LK G G
Sbjct: 131 LFFANKMDAAGAKTAAELVEILDLTTL-----------MGDHPFVIFASNGLKGTGVHEG 179
Query: 186 FRWL 189
F WL
Sbjct: 180 FSWL 183
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+LL LGLDNAGKT +L+ + PTL + L D+GG R W
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R+YF + D +++++D++DR R + + E +LI NK D+ A S +
Sbjct: 80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNA 139
Query: 143 VRHFFGL 149
++ L
Sbjct: 140 IQEALEL 146
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+LL LGLDNAGKT +L+ + PTL + L D+GG R W
Sbjct: 20 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYW 79
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R+YF + D +++++D++DR R + + E +LI NK D+ A S +
Sbjct: 80 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 139
Query: 143 VRHFFGL 149
++ L
Sbjct: 140 IQEALEL 146
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K+ +L +GL +GKT + ++ + + + M PT+ +++ G++ D+GG +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPR 79
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDA 137
R +W Y V AIV+++DA+D+ + SK E +P+L+LGNK D+ A
Sbjct: 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139
Query: 138 ASEDEVRHFFGLYGL 152
E E+ L +
Sbjct: 140 LDEKELIEKMNLSAI 154
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+LL LGLDNAGKT +L+ + PTL + L D+GG R W
Sbjct: 3 RLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYW 62
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDE 142
R+YF + D +++++D++DR R + + E +LI NK D+ A S +
Sbjct: 63 RNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNA 122
Query: 143 VRHFFGL 149
++ L
Sbjct: 123 IQEALEL 129
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 54/120 (45%)
Query: 30 DNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89
DNAGKT +L+ + PTL + L D+GG R WR+YF +
Sbjct: 27 DNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFEST 86
Query: 90 DAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 149
D +++++D++DR R + + E +LI NK D+ A S + ++ L
Sbjct: 87 DGLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 9/120 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHP---TSEELSMGDIVFTTH--DLGGHV 76
K++ LG GKT L+ ND+ + Q+ T+ T E GD V T D G
Sbjct: 10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKY---EXXXXXXXXXXXXVPILILGNKID 133
+ + + ++ D V + D ++ S F K E P +ILGNKID
Sbjct: 70 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 19 KKSGKLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSM---GD-IVFTTHDLG 73
+K+ K++ G GK+ FL+++ KN+ TL + ++ G+ V D
Sbjct: 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTA 85
Query: 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKID 133
G + R + + YF D ++ + D + F + E VPI+++GNK D
Sbjct: 86 GQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPIMLVGNKAD 144
Query: 134 IFDAASEDEVRHFFGLYG 151
I D A+ + + G +G
Sbjct: 145 IRDTAATEGQKCVPGHFG 162
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++PTL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++PTL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 45/161 (27%)
Query: 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMP--TLHPTSEELSMGDIV 66
+LL GL +++ +G N GK+ LL L N+ A +P T SEE+ + I+
Sbjct: 238 ILLNRGL-----RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL 292
Query: 67 F----------TTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS------DR---SRFPES 107
F T+DL + R ++ A D ++F++DAS DR R
Sbjct: 293 FRIVDTAGVRSETNDLVERLGIERTLQEIEKA-DIVLFVLDASSPLDEEDRKILERIKNK 351
Query: 108 KYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFG 148
+Y L++ NK+D+ + +E+E+++ G
Sbjct: 352 RY----------------LVVINKVDVVEKINEEEIKNKLG 376
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 33.9 bits (76), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 17 LWKKSGKLLFLG-----LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL----------- 60
LWK SG L N + L L DR AQ P PT +++
Sbjct: 104 LWKDSGVQACFNRSREYLLNDSAAYYLNDL--DRIAQ--PNYIPTQQDVLRTRVKTTGIV 159
Query: 61 ----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 160 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 203
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + SR +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVT--SRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 104 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 158
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 159 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 203
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 101 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 155
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 156 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 33.5 bits (75), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 103 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 157
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 158 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 202
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 130 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 184
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 185 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 33.5 bits (75), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 99 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 153
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 154 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 100 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 154
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 155 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 199
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 33.5 bits (75), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 99 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 153
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 154 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 101 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 155
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 156 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 33.5 bits (75), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 98 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 152
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 153 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 197
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 106 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 160
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 161 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 105 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 159
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 160 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 204
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 132 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 186
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 187 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 231
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 129 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 183
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 129 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 183
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 129 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVPTTGI 183
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 33.5 bits (75), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 136 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 190
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 191 VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 235
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
PT + D+ F D+GG R+ W + F V AI+F + SD
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSD 215
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ T+ HP S + G+I F D G +
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 66
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ Y+ + + D + SR +PI++ GNK+D+
Sbjct: 67 FGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ T+ HP S + G+I F D G +
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 65
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ Y+ + + D + SR +PI++ GNK+D+
Sbjct: 66 FGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 YGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ S D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 QFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 225
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ S D+ F D+GG R+ W F V AI+F + SD
Sbjct: 190 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 231
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLEDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ S D+ F D+GG R+ W F V AI+F + SD
Sbjct: 159 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 8 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 67
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 68 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 124
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 73
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 74 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KLL +G GK+ LL +D T ++ T+ + EL + D G +
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 82
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
R + Y+ I+ + D +D+ F K + +L+ GNK D+ D
Sbjct: 83 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDLKD 140
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KLL +G GK+ LL +D T ++ T+ + EL + D G +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
R + Y+ I+ + D +D+ F K + +L+ GNK D+ D
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDLKD 127
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 6/119 (5%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KLL +G GK+ LL +D T ++ T+ + EL + D G +
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
R + Y+ I+ + D +D+ F K + +L+ GNK D+ D
Sbjct: 70 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV-GNKCDLKD 127
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 129 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 183
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 VETHFTFKDLHFKMFDVGGLRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
D+ F D+GG R+ W F V AI+F + SD
Sbjct: 162 DLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
D+ F D+GG R+ W F V AI+F + SD
Sbjct: 169 DLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
D+ F D+GG R+ W F V AI+F + SD
Sbjct: 169 DLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 31.6 bits (70), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIXFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
D+ F D+GG R+ W F V AI+F + SD
Sbjct: 192 DLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 130 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 184
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+ G R+ W F V AI+F + SD
Sbjct: 185 VETHFTFKDLHFKMFDVAGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 129 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 183
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+G R+ W F V AI+F + SD
Sbjct: 184 VETHFTFKDLHFKMFDVGAQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ T+ HP S + G+I F D G +
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLEK 73
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ Y+ + + D + SR +PI++ GNK+D+
Sbjct: 74 FGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 7/119 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 12 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEK 71
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
+ Y+ + + D + R + +PI++ GNK+DI D
Sbjct: 72 FGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 26/105 (24%)
Query: 17 LWKKSGKLLFLG------LDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL---------- 60
LWK SG L+++ +L + DR AQ P PT +++
Sbjct: 130 LWKDSGVQACFNRSREYQLNDSAAYYLNDL---DRIAQ--PNYIPTQQDVLRTRVKTTGI 184
Query: 61 -----SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
+ D+ F D+ G R+ W F V AI+F + SD
Sbjct: 185 VETHFTFKDLHFKMFDVDGQRSERKKWIHCFEGVTAIIFCVALSD 229
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 212
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 236
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 9/125 (7%)
Query: 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHD 71
G+ KL+ +G GKT LL + D+ + ++PT+ + E+ + D
Sbjct: 1 GMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 72 LGGHVQARRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILG 129
G R+ +P D I F ID+ D E+ E VPI+++G
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVG 117
Query: 130 NKIDI 134
NK D+
Sbjct: 118 NKKDL 122
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 30.4 bits (67), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 69
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 124
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTH 70
LG KL+ +G GKT LL + D+ + ++PT+ + E+ +
Sbjct: 3 LGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALW 62
Query: 71 DLGGHVQARRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILIL 128
D G R+ +P D I F ID+ D E+ E VPI+++
Sbjct: 63 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILV 119
Query: 129 GNKIDI 134
GNK D+
Sbjct: 120 GNKKDL 125
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ A ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRARPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 123
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 123
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95
DI F D+GG R+ W +F VD +F+
Sbjct: 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFV 191
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI----------IDASDRSRFPESK 108
+ S D+ F D+GG R+ W F V I+FI ++ + +R ES
Sbjct: 158 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESL 217
Query: 109 YEXXXXXXXXXXXXVPILILGNKIDIF 135
+ I++ NK D+F
Sbjct: 218 HLFNSICNHRYFATTSIVLFLNKKDVF 244
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 286
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 25 LFLGLDNAGKTFLLQMLKNDR------TAQHMPTLHPTSEELSMGDIV-FTTHDLGGHVQ 77
++L L + + L+ +N R T +H P L + E LSM THD+ V
Sbjct: 85 IYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVI 144
Query: 78 ARRVWRD 84
R++W+D
Sbjct: 145 PRKLWKD 151
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 25 LFLGLDNAGKTFLLQMLKNDR------TAQHMPTLHPTSEELSMGDIV-FTTHDLGGHVQ 77
++L L + + L+ +N R T +H P L + E LSM THD+ V
Sbjct: 79 IYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVI 138
Query: 78 ARRVWRD 84
R++W+D
Sbjct: 139 PRKLWKD 145
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 141
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 29.6 bits (65), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 68
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 69 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 123
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 29.6 bits (65), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 23 KLLFLGLDNAGKTFL-LQMLKNDRTAQHMPTLHPTSEELSMGD---IVFTTHDLGGHVQA 78
KL+ +G D GK+ L +Q+++N ++ PT+ + + + D + D G +
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ Y + + + ++ F + + VP++++GNK D+
Sbjct: 66 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 29.6 bits (65), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 5/118 (4%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
K + +G GKT LL ND +++PT+ + S + + +D G
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
R+ +P D + + + F K E VP L++G +ID+ D
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVK-EEWVPELKEYAPNVPFLLIGTQIDLRD 136
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
+ F D+GG RR W F V AI+F++ +S
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
+ F D+GG RR W F V AI+F++ +S
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
+ F D+GG RR W F V AI+F++ +S
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
+ F D+GG RR W F V AI+F++ +S
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
+ F D+GG RR W F V AI+F++ +S
Sbjct: 203 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 87 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFXPNVPIILVGNKKDL 141
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 55 PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRF 104
P E G+ V+ D+GG RR W F V A++F S+ ++R
Sbjct: 174 PVGENKKSGE-VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM 232
Query: 105 PESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
E+K ++ NK DIF+
Sbjct: 233 METKELFDWVLKQPCFEKTSFMLFLNKFDIFE 264
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPT--SEELSMGDIVFTTH--DLGGHVQ 77
K++ LG GKT L+ N + + Q+ T+ ++E+ + D + T D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKIDI 134
+ + ++ D V + D + + F + E P ++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL------SMGDIVFT------ 68
SG + +G N GK+ LL L + A P T + L IVF
Sbjct: 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLH 66
Query: 69 -THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILI 127
D G + V+ + V+A+V+++D P + E VPIL+
Sbjct: 67 KPMDALGEFMDQEVY-EALADVNAVVWVVDLR---HPPTPEDELVARALKPLVGKVPILL 122
Query: 128 LGNKID 133
+GNK+D
Sbjct: 123 VGNKLD 128
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPT--SEELSMGDIVFTTH--DLGGHVQ 77
K++ LG GKT L+ N + + Q+ T+ ++E+ + D + T D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKIDI 134
+ + ++ D V + D + + F + E P ++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 67
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 68 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 122
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
Length = 595
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99
EE+ G+ + + Q +R W DYFP D + I+++S
Sbjct: 286 EEMGYGEEALGRNAIVAGFQGQRQWTDYFPNGDFMETILNSS 327
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSE 212
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 50 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF----------IIDAS 99
+PT + ++F D+GG RR W F V +I+F ++++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 100 DRSRFPESK 108
+ +R ESK
Sbjct: 238 NENRMEESK 246
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 50 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF----------IIDAS 99
+PT + ++F D+GG RR W F V +I+F ++++
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 237
Query: 100 DRSRFPESK 108
+ +R ESK
Sbjct: 238 NENRMEESK 246
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 50 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF----------IIDAS 99
+PT + ++F D+GG RR W F V +I+F ++++
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 211
Query: 100 DRSRFPESK 108
+ +R ESK
Sbjct: 212 NENRMEESK 220
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 50 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF----------IIDAS 99
+PT + ++F D+GG RR W F V +I+F ++++
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 239
Query: 100 DRSRFPESK 108
+ +R ESK
Sbjct: 240 NENRMEESK 248
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 50 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF----------IIDAS 99
+PT + ++F D+GG RR W F V +I+F ++++
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESD 231
Query: 100 DRSRFPESK 108
+ +R ESK
Sbjct: 232 NENRMEESK 240
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 65 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 119
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPT--SEELSMGDIVFTTH--DLGGHVQ 77
K++ LG GKT L+ N + + Q+ T+ ++E+ + D + T D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKID 133
+ + ++ D V + D + + F + E P ++LGNKID
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 67 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 121
>pdb|2FH5|B Chain B, The Structure Of The Mammalian Srp Receptor
pdb|2GO5|2 Chain 2, Structure Of Signal Recognition Particle Receptor (Sr)
In Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
Length = 214
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI------VFTTHDLGGHVQ 77
+LF+GL ++GKT L L T Q+ T ++ ++ + T DL GH
Sbjct: 10 VLFVGLCDSGKTLLFVRL---LTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHES 66
Query: 78 ARRVWRDYF-PAVDAIVFIIDAS 99
R D F + A+VF++D++
Sbjct: 67 LRFQLLDRFKSSARAVVFVVDSA 89
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 23 KLLFLGLDNAGKTFL-LQMLKNDRTAQHMPTLHPTSEELSMGD---IVFTTHDLGGHVQA 78
KL+ +G D GK+ L +Q+++N ++ PT+ + + + D + D G +
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ Y + + + ++ F + VP++++GNK D+
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120
>pdb|1R08|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|1R09|2 Chain 2, Human Rhinovirus 14 Complexed With Antiviral Compound R
61837
pdb|1RMU|2 Chain 2, Three-Dimensional Structures Of Drug-Resistant Mutants
Of Human Rhinovirus 14
pdb|2R04|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2R06|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2R07|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RM2|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RMU|2 Chain 2, Three-Dimensional Structures Of Drug-Resistant Mutants
Of Human Rhinovirus 14
pdb|2RR1|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS1|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS3|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS5|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|4RHV|2 Chain 2, The Use Of Molecular-Replacement Phases For The
Refinement Of The Human Rhinovirus 14 Structure
pdb|1HRI|2 Chain 2, Structure Determination Of Antiviral Compound Sch 38057
Complexed With Human Rhinovirus 14
pdb|1HRV|2 Chain 2, Hrv14SDZ 35-682 Complex
pdb|1RUJ|2 Chain 2, Rhinovirus 14 Mutant With Ser 1 223 Replaced By Gly
(S1223g)
pdb|1RUI|2 Chain 2, Rhinovirus 14 Mutant S1223g Complexed With Antiviral
Compound Win 52084
pdb|1RUH|2 Chain 2, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52084
pdb|1RUG|2 Chain 2, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52035
pdb|1RUF|2 Chain 2, Rhinovirus 14 (Hrv14) (Mutant With Asn 1 219 Replaced By
Ala (N219a In Chain 1)
pdb|1RUE|2 Chain 2, Rhinovirus 14 Site Directed Mutant N1219a Complexed With
Antiviral Compound Win 52035
pdb|1RUD|2 Chain 2, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52084
pdb|1RUC|2 Chain 2, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52035
pdb|1VRH|2 Chain 2, Hrv14/sdz 880-061 Complex
pdb|1RVF|2 Chain 2, Fab Complexed With Intact Human Rhinovirus
pdb|1D3I|2 Chain 2, Cryo-Em Structure Of Human Rhinovirus 14 (Hrv14)
Complexed With A Two-Domain Fragment Of Its Cellular
Receptor, Intercellular Adhesion Molecule-1
(D1d2-Icam-1). Implications For Virus-Receptor
Interactions. Alpha Carbons Only
pdb|1NA1|B Chain B, The Structure Of Hrv14 When Complexed With Pleconaril
pdb|1NCQ|B Chain B, The Structure Of Hrv14 When Complexed With Pleconaril,
An Antiviral Compound
Length = 262
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 91
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|2HWB|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket
In Hrv14 And Hrv1a
pdb|2HWC|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket
In Hrv14 And Hrv1a
Length = 262
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 91
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|1K5M|B Chain B, Crystal Structure Of A Human Rhinovirus Type 14:human
Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus
Mn- Iii-2
Length = 277
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 91
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|2WA0|A Chain A, Crystal Structure Of The Human Magea4
Length = 240
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 125 ILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT----PREIL 164
I++LG D+ASE+E+ G+ G+ G+E T PR++L
Sbjct: 127 IIVLGTIAMEGDSASEEEIWEELGVMGVYDGREHTVYGEPRKLL 170
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPT--SEELSMGDIVFTTH--DLGGHVQ 77
K++ LG GKT L+ N + + Q+ T+ ++E+ + D + T D G +
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKIDI 134
+ + ++ D V + D + + F + E P ++LGNKID+
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 23 KLLFLGLDNAGKTFLL-QMLKNDRTAQHMPTLHPT-SEELSMGDIVFTTH--DLGGHVQA 78
K++ LG GKT L Q ++ + + + PT+ T S+ +++G F H D G +
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEY 85
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFP--ESKYEXXXXXXXXXXXXVPILILGNKIDI 134
+ + V V + + F ES Y+ VP++++GNK D+
Sbjct: 86 SILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR--VPVVLVGNKADL 141
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 23 KLLFLGLDNAGKTFLLQML---KNDRTAQHMPTLHPTSEELSMGD--IVFTTHDLGGHVQ 77
KL+FLG + GKT L+ D T Q + S+ + + D I D G +
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 67
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 136
R + Y A V + D ++ + F ++ + V I+++GNK D+ D
Sbjct: 68 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLAD 125
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ + ++PT+ + E+ + D G
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 79 RRVWRDYFPAVDAI--VFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDI 134
R+ +P D I F ID+ D E+ E VPI+++GNK D+
Sbjct: 70 DRLRPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFCPNVPIILVGNKKDL 124
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 92 IVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYG 151
I++I D S+ FP + +P L++ NKID+ D + + F G
Sbjct: 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKG 309
Query: 152 LT---------TGKEFTPREILQ-MRPM 169
L TG + EI++ +RP+
Sbjct: 310 LNPIKISALKGTGIDLVKEEIIKTLRPL 337
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100
I F D+GG R+ W F + +I+F++ +S+
Sbjct: 199 IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSE 234
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA 47
R+VLL+ + + ++L +G+ N GK+ ++ LK R +
Sbjct: 87 RKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRAS 125
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVW 82
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|2QIN|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
Length = 269
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVW 82
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 58 EELSMGDIVFTTHDLGGHVQARRVW 82
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH-------DLGGH 75
K++ LG GK+ L+ ++ + H E D+ H D G
Sbjct: 11 KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKI 132
+ R + ++ D + D F K E P +ILGNKI
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 133 DI 134
DI
Sbjct: 129 DI 130
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 12/122 (9%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH-------DLGGH 75
K++ LG GK+ L+ ++ + H E D+ H D G
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPES---KYEXXXXXXXXXXXXVPILILGNKI 132
+ R + ++ D + D F K E P +ILGNKI
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 133 DI 134
DI
Sbjct: 127 DI 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.143 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,703,594
Number of Sequences: 62578
Number of extensions: 214099
Number of successful extensions: 888
Number of sequences better than 100.0: 193
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 251
length of query: 194
length of database: 14,973,337
effective HSP length: 94
effective length of query: 100
effective length of database: 9,091,005
effective search space: 909100500
effective search space used: 909100500
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)