Query psy2159
Match_columns 194
No_of_seqs 123 out of 1728
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 17:48:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00223 ADP-ribosylation fact 100.0 5.6E-35 1.2E-39 208.6 20.5 164 18-193 14-177 (181)
2 PF00025 Arf: ADP-ribosylation 100.0 3.3E-35 7.1E-40 208.7 18.8 174 8-193 1-175 (175)
3 cd04149 Arf6 Arf6 subfamily. 100.0 8E-35 1.7E-39 205.6 19.0 162 19-192 7-168 (168)
4 PTZ00133 ADP-ribosylation fact 100.0 3.1E-34 6.7E-39 205.0 20.3 164 18-193 14-177 (182)
5 cd00879 Sar1 Sar1 subfamily. 100.0 8.7E-34 1.9E-38 204.1 22.1 189 4-193 2-190 (190)
6 smart00177 ARF ARF-like small 100.0 3.2E-34 7E-39 203.8 19.0 163 19-193 11-173 (175)
7 smart00178 SAR Sar1p-like memb 100.0 8.9E-34 1.9E-38 203.1 20.1 183 6-193 2-184 (184)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 5.8E-34 1.3E-38 199.5 18.6 158 22-191 1-158 (159)
9 cd04154 Arl2 Arl2 subfamily. 100.0 1.3E-33 2.7E-38 200.4 18.8 170 10-191 3-172 (173)
10 KOG0092|consensus 100.0 5E-34 1.1E-38 196.6 14.2 157 19-193 3-166 (200)
11 cd04158 ARD1 ARD1 subfamily. 100.0 2.8E-33 6E-38 198.0 18.4 160 23-193 1-160 (169)
12 KOG0084|consensus 100.0 6.2E-34 1.3E-38 196.9 14.2 158 18-193 6-171 (205)
13 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.8E-32 3.9E-37 194.7 18.9 161 19-191 13-173 (174)
14 KOG0094|consensus 100.0 7.5E-33 1.6E-37 191.0 15.2 161 16-193 17-184 (221)
15 KOG0070|consensus 100.0 3.9E-33 8.5E-38 191.6 13.6 177 1-193 1-177 (181)
16 cd04121 Rab40 Rab40 subfamily. 100.0 2.6E-32 5.6E-37 195.7 17.6 156 19-193 4-166 (189)
17 cd04120 Rab12 Rab12 subfamily. 100.0 2.8E-32 6.2E-37 197.2 17.4 155 22-193 1-162 (202)
18 KOG0073|consensus 100.0 3.9E-32 8.4E-37 182.3 16.0 173 9-193 4-177 (185)
19 cd04151 Arl1 Arl1 subfamily. 100.0 7.1E-32 1.5E-36 188.7 18.2 157 23-191 1-157 (158)
20 cd04157 Arl6 Arl6 subfamily. 100.0 8.1E-32 1.8E-36 188.9 18.5 158 23-192 1-162 (162)
21 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 7.5E-32 1.6E-36 191.1 17.4 156 21-193 2-163 (172)
22 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.4E-31 3.1E-36 188.8 18.7 160 23-191 1-166 (167)
23 cd04133 Rop_like Rop subfamily 100.0 6.4E-32 1.4E-36 191.6 16.7 153 22-193 2-172 (176)
24 cd04156 ARLTS1 ARLTS1 subfamil 100.0 2.5E-31 5.4E-36 186.2 18.0 158 23-191 1-159 (160)
25 KOG0071|consensus 100.0 2.7E-31 5.8E-36 173.9 16.3 165 17-193 13-177 (180)
26 cd04175 Rap1 Rap1 subgroup. T 100.0 1.9E-31 4.2E-36 187.6 17.0 156 21-193 1-162 (164)
27 cd04155 Arl3 Arl3 subfamily. 100.0 6.1E-31 1.3E-35 186.5 19.6 168 13-192 6-173 (173)
28 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.7E-31 3.7E-36 190.5 16.7 156 19-192 3-178 (182)
29 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.9E-31 1.1E-35 184.4 18.5 158 23-192 1-158 (158)
30 KOG0078|consensus 100.0 1.3E-31 2.9E-36 187.8 14.9 158 18-193 9-173 (207)
31 cd04136 Rap_like Rap-like subf 100.0 3.9E-31 8.5E-36 185.6 17.3 155 22-193 2-162 (163)
32 cd04160 Arfrp1 Arfrp1 subfamil 100.0 4.8E-31 1E-35 186.0 17.6 160 23-192 1-167 (167)
33 cd04126 Rab20 Rab20 subfamily. 100.0 4E-31 8.6E-36 193.3 17.7 167 22-193 1-189 (220)
34 cd01875 RhoG RhoG subfamily. 100.0 1.8E-31 3.9E-36 192.2 15.0 169 20-193 2-176 (191)
35 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.2E-31 1.3E-35 185.1 17.3 156 23-191 1-163 (164)
36 cd04127 Rab27A Rab27a subfamil 100.0 4.6E-31 1E-35 188.3 16.7 157 20-193 3-176 (180)
37 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.5E-31 2.1E-35 183.3 17.5 155 22-193 2-161 (162)
38 KOG0080|consensus 100.0 1.3E-31 2.9E-36 179.2 12.3 159 18-193 8-173 (209)
39 cd00877 Ran Ran (Ras-related n 100.0 4.3E-31 9.3E-36 186.2 15.6 153 22-193 1-158 (166)
40 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-30 2.9E-35 186.5 18.3 163 20-193 2-169 (183)
41 cd04122 Rab14 Rab14 subfamily. 100.0 9.7E-31 2.1E-35 184.4 17.4 154 22-193 3-163 (166)
42 PTZ00369 Ras-like protein; Pro 100.0 5.8E-31 1.3E-35 189.3 16.0 158 19-193 3-166 (189)
43 cd04131 Rnd Rnd subfamily. Th 100.0 7.7E-31 1.7E-35 186.7 16.5 153 22-192 2-174 (178)
44 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.2E-31 6.9E-36 188.4 14.4 164 22-192 2-173 (175)
45 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.2E-30 2.7E-35 189.3 17.5 156 22-193 1-167 (201)
46 cd04176 Rap2 Rap2 subgroup. T 100.0 1.9E-30 4.1E-35 182.3 17.4 157 21-194 1-163 (163)
47 cd04119 RJL RJL (RabJ-Like) su 100.0 1.7E-30 3.7E-35 183.0 17.3 155 22-193 1-166 (168)
48 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.7E-30 3.8E-35 191.0 17.5 154 20-192 12-186 (232)
49 PLN03071 GTP-binding nuclear p 100.0 9.6E-31 2.1E-35 192.0 15.9 155 19-193 11-171 (219)
50 cd01871 Rac1_like Rac1-like su 100.0 1.8E-30 4E-35 184.3 16.9 168 21-193 1-174 (174)
51 cd04117 Rab15 Rab15 subfamily. 100.0 2.9E-30 6.3E-35 181.1 17.7 153 22-192 1-160 (161)
52 KOG0394|consensus 100.0 6.4E-31 1.4E-35 179.8 12.9 158 19-192 7-176 (210)
53 cd01867 Rab8_Rab10_Rab13_like 100.0 4.5E-30 9.8E-35 181.2 17.7 156 20-193 2-164 (167)
54 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3E-30 6.4E-35 184.4 16.9 157 22-193 1-165 (182)
55 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.2E-30 4.8E-35 182.0 16.0 157 20-193 1-163 (164)
56 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 4E-30 8.6E-35 181.9 16.9 155 22-193 1-164 (170)
57 smart00173 RAS Ras subfamily o 100.0 4.1E-30 8.9E-35 180.7 16.8 155 22-193 1-161 (164)
58 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 5E-30 1.1E-34 187.6 17.5 167 22-192 2-174 (222)
59 cd01865 Rab3 Rab3 subfamily. 100.0 5.8E-30 1.3E-34 180.3 17.2 154 22-193 2-162 (165)
60 KOG0079|consensus 100.0 5.2E-31 1.1E-35 174.1 11.0 153 22-193 9-168 (198)
61 cd04144 Ras2 Ras2 subfamily. 100.0 4.2E-30 9.1E-35 185.0 16.6 154 23-193 1-162 (190)
62 cd04103 Centaurin_gamma Centau 100.0 5.6E-30 1.2E-34 179.0 16.5 151 22-193 1-158 (158)
63 KOG0098|consensus 100.0 2.3E-30 5E-35 177.4 14.0 156 19-192 4-166 (216)
64 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.4E-30 1.8E-34 179.5 17.3 154 22-193 3-163 (166)
65 KOG0077|consensus 100.0 9.1E-31 2E-35 176.1 11.1 193 2-194 1-193 (193)
66 cd04134 Rho3 Rho3 subfamily. 100.0 2.8E-30 6.1E-35 185.7 14.1 168 22-193 1-173 (189)
67 cd04116 Rab9 Rab9 subfamily. 100.0 1.3E-29 2.9E-34 179.2 17.3 158 20-193 4-170 (170)
68 cd04109 Rab28 Rab28 subfamily. 100.0 1E-29 2.2E-34 186.3 17.2 155 22-193 1-165 (215)
69 cd04159 Arl10_like Arl10-like 100.0 2.3E-29 5.1E-34 175.3 18.3 157 23-191 1-158 (159)
70 KOG0075|consensus 100.0 4.3E-30 9.3E-35 169.5 13.4 165 17-193 16-181 (186)
71 cd04140 ARHI_like ARHI subfami 100.0 1.3E-29 2.9E-34 178.4 16.8 154 22-192 2-163 (165)
72 cd04110 Rab35 Rab35 subfamily. 100.0 1.7E-29 3.6E-34 183.1 17.7 155 20-193 5-166 (199)
73 cd04112 Rab26 Rab26 subfamily. 100.0 2.3E-29 5.1E-34 181.2 17.5 154 22-193 1-162 (191)
74 cd01864 Rab19 Rab19 subfamily. 100.0 2.7E-29 5.9E-34 176.8 17.5 157 20-193 2-165 (165)
75 cd04111 Rab39 Rab39 subfamily. 100.0 1.8E-29 4E-34 184.2 17.2 156 21-193 2-165 (211)
76 cd01860 Rab5_related Rab5-rela 100.0 2.9E-29 6.4E-34 176.1 17.5 155 21-193 1-162 (163)
77 cd04106 Rab23_lke Rab23-like s 100.0 1.6E-29 3.6E-34 177.3 16.0 153 22-193 1-162 (162)
78 cd01868 Rab11_like Rab11-like. 100.0 3.3E-29 7.2E-34 176.3 17.4 155 21-193 3-164 (165)
79 cd04113 Rab4 Rab4 subfamily. 100.0 3.2E-29 7E-34 175.7 17.2 154 22-193 1-161 (161)
80 smart00176 RAN Ran (Ras-relate 100.0 1.1E-29 2.4E-34 183.4 14.5 147 27-193 1-153 (200)
81 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.1E-29 8.9E-34 176.8 16.9 156 21-193 2-168 (170)
82 cd04124 RabL2 RabL2 subfamily. 100.0 4.7E-29 1E-33 175.0 16.3 152 22-193 1-157 (161)
83 PF00071 Ras: Ras family; Int 100.0 4E-29 8.6E-34 175.3 16.0 153 23-193 1-160 (162)
84 cd04132 Rho4_like Rho4-like su 100.0 4.2E-29 9E-34 179.3 16.2 154 22-193 1-166 (187)
85 cd01866 Rab2 Rab2 subfamily. 100.0 8.6E-29 1.9E-33 174.8 17.5 155 21-193 4-165 (168)
86 cd04143 Rhes_like Rhes_like su 100.0 1E-28 2.3E-33 183.7 18.1 155 22-192 1-169 (247)
87 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-28 2.3E-33 172.9 17.2 154 22-193 1-161 (161)
88 KOG0093|consensus 100.0 1.4E-29 3E-34 167.1 11.7 156 20-193 20-182 (193)
89 KOG0087|consensus 100.0 1.4E-29 3.1E-34 177.0 12.4 158 18-193 11-175 (222)
90 cd01863 Rab18 Rab18 subfamily. 100.0 1.5E-28 3.3E-33 172.2 17.9 155 22-193 1-161 (161)
91 cd04125 RabA_like RabA-like su 100.0 1E-28 2.2E-33 177.5 17.3 154 22-193 1-161 (188)
92 PLN03118 Rab family protein; P 100.0 1.3E-28 2.8E-33 180.0 18.0 159 18-193 11-176 (211)
93 PLN03110 Rab GTPase; Provision 100.0 1.2E-28 2.6E-33 180.7 17.5 156 20-193 11-173 (216)
94 cd04135 Tc10 TC10 subfamily. 100.0 3.8E-29 8.2E-34 177.5 14.3 169 22-193 1-173 (174)
95 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-28 3.2E-33 177.3 17.4 153 22-193 1-165 (193)
96 smart00174 RHO Rho (Ras homolo 100.0 7E-29 1.5E-33 176.1 15.4 152 24-193 1-171 (174)
97 smart00175 RAB Rab subfamily o 100.0 1.6E-28 3.4E-33 172.5 16.6 154 22-193 1-161 (164)
98 cd04177 RSR1 RSR1 subgroup. R 100.0 1.9E-28 4.2E-33 173.0 17.1 157 21-193 1-163 (168)
99 cd04139 RalA_RalB RalA/RalB su 100.0 2.1E-28 4.4E-33 171.8 16.9 155 22-193 1-161 (164)
100 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.1E-28 4.5E-33 172.0 16.8 153 22-193 1-163 (164)
101 KOG0086|consensus 100.0 9.1E-29 2E-33 164.4 13.5 156 19-192 7-169 (214)
102 PLN03108 Rab family protein; P 100.0 4.6E-28 1E-32 176.8 18.1 156 20-193 5-167 (210)
103 cd04142 RRP22 RRP22 subfamily. 100.0 3.6E-28 7.8E-33 175.7 16.7 156 22-193 1-173 (198)
104 cd04146 RERG_RasL11_like RERG/ 100.0 2.9E-28 6.3E-33 171.5 15.5 154 23-193 1-163 (165)
105 KOG0091|consensus 100.0 1.2E-28 2.6E-33 165.5 12.7 160 17-193 4-172 (213)
106 cd04148 RGK RGK subfamily. Th 100.0 4.9E-28 1.1E-32 177.9 17.1 153 22-193 1-162 (221)
107 cd01862 Rab7 Rab7 subfamily. 100.0 8.3E-28 1.8E-32 170.1 17.6 156 22-193 1-166 (172)
108 cd01873 RhoBTB RhoBTB subfamil 100.0 5.3E-28 1.1E-32 174.3 16.8 151 21-192 2-194 (195)
109 cd04123 Rab21 Rab21 subfamily. 100.0 1.3E-27 2.8E-32 167.4 17.2 154 22-193 1-161 (162)
110 cd01870 RhoA_like RhoA-like su 100.0 3.6E-28 7.9E-33 172.6 14.6 166 22-192 2-173 (175)
111 cd01892 Miro2 Miro2 subfamily. 100.0 6.6E-28 1.4E-32 170.5 15.5 156 19-193 2-165 (169)
112 cd01893 Miro1 Miro1 subfamily. 100.0 5.4E-28 1.2E-32 170.4 14.6 156 22-193 1-163 (166)
113 cd00154 Rab Rab family. Rab G 100.0 1.2E-27 2.5E-32 166.6 16.1 152 22-191 1-159 (159)
114 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.5E-27 3.3E-32 169.2 16.1 151 22-190 1-170 (173)
115 KOG0072|consensus 100.0 1.4E-28 3E-33 161.9 9.4 173 9-193 6-178 (182)
116 cd04147 Ras_dva Ras-dva subfam 100.0 2.5E-27 5.3E-32 171.6 17.0 155 23-193 1-162 (198)
117 cd04137 RheB Rheb (Ras Homolog 100.0 2.7E-27 5.9E-32 168.9 16.9 155 22-193 2-162 (180)
118 KOG0074|consensus 100.0 8.2E-28 1.8E-32 157.8 12.6 165 17-193 13-178 (185)
119 cd00876 Ras Ras family. The R 100.0 3.4E-27 7.3E-32 164.9 15.8 154 23-193 1-160 (160)
120 KOG0081|consensus 100.0 4.7E-29 1E-33 166.8 5.5 156 21-193 9-180 (219)
121 KOG0095|consensus 100.0 8.5E-28 1.8E-32 159.3 10.8 155 20-191 6-166 (213)
122 cd00157 Rho Rho (Ras homology) 100.0 6.9E-27 1.5E-31 165.2 15.2 153 22-191 1-170 (171)
123 cd04114 Rab30 Rab30 subfamily. 100.0 2E-26 4.4E-31 162.6 17.5 158 19-193 5-168 (169)
124 cd01897 NOG NOG1 is a nucleola 99.9 3.4E-26 7.5E-31 161.3 16.8 152 23-193 2-167 (168)
125 KOG0088|consensus 99.9 5.8E-28 1.3E-32 161.5 6.6 157 19-193 11-174 (218)
126 PTZ00132 GTP-binding nuclear p 99.9 3.7E-26 8E-31 167.5 16.8 157 18-193 6-167 (215)
127 cd04129 Rho2 Rho2 subfamily. 99.9 5.7E-26 1.2E-30 163.1 16.2 155 21-193 1-172 (187)
128 cd01898 Obg Obg subfamily. Th 99.9 9.4E-26 2E-30 159.3 15.7 155 23-193 2-170 (170)
129 KOG0395|consensus 99.9 1E-25 2.2E-30 161.8 14.5 157 20-193 2-164 (196)
130 KOG0076|consensus 99.9 1.1E-26 2.3E-31 157.6 8.2 165 18-193 14-186 (197)
131 cd04171 SelB SelB subfamily. 99.9 4.6E-25 1E-29 154.7 14.8 151 23-191 2-163 (164)
132 cd01878 HflX HflX subfamily. 99.9 1.4E-24 3E-29 157.9 16.8 153 19-193 39-204 (204)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 9.8E-25 2.1E-29 168.4 16.3 155 22-193 159-327 (335)
134 KOG0393|consensus 99.9 3E-26 6.6E-31 161.4 7.0 168 20-192 3-177 (198)
135 cd01890 LepA LepA subfamily. 99.9 1.2E-24 2.6E-29 155.0 15.5 152 23-193 2-176 (179)
136 PRK15494 era GTPase Era; Provi 99.9 2E-24 4.3E-29 167.6 17.6 154 19-193 50-215 (339)
137 KOG0083|consensus 99.9 6.2E-27 1.4E-31 152.4 3.0 150 26-193 2-159 (192)
138 KOG0097|consensus 99.9 1.3E-24 2.9E-29 143.0 13.0 155 20-192 10-171 (215)
139 cd04105 SR_beta Signal recogni 99.9 2.8E-24 6.1E-29 155.9 14.6 169 23-191 2-202 (203)
140 TIGR02729 Obg_CgtA Obg family 99.9 4.6E-24 1E-28 164.5 16.2 157 22-194 158-329 (329)
141 TIGR02528 EutP ethanolamine ut 99.9 1.8E-24 3.9E-29 148.6 12.5 134 23-190 2-141 (142)
142 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 8.1E-24 1.7E-28 149.1 15.9 157 23-192 2-164 (168)
143 cd04102 RabL3 RabL3 (Rab-like3 99.9 5.2E-24 1.1E-28 153.9 14.7 115 22-136 1-143 (202)
144 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-23 3.7E-28 162.7 17.6 151 20-193 188-351 (351)
145 cd01881 Obg_like The Obg-like 99.9 6E-24 1.3E-28 150.8 13.5 153 26-193 1-176 (176)
146 TIGR00231 small_GTP small GTP- 99.9 2.8E-23 6.1E-28 144.2 16.7 153 21-190 1-160 (161)
147 cd00881 GTP_translation_factor 99.9 3.4E-23 7.3E-28 148.5 17.2 163 23-193 1-186 (189)
148 TIGR00436 era GTP-binding prot 99.9 3.7E-23 7.9E-28 156.4 16.8 150 23-193 2-163 (270)
149 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-23 2.7E-28 144.6 12.6 141 22-189 1-156 (156)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.3E-23 1.8E-27 142.1 16.2 143 22-193 2-156 (157)
151 cd00882 Ras_like_GTPase Ras-li 99.9 3.6E-23 7.8E-28 142.4 13.7 149 26-191 1-157 (157)
152 cd01879 FeoB Ferrous iron tran 99.9 5.1E-23 1.1E-27 143.5 14.2 144 26-193 1-156 (158)
153 cd01889 SelB_euk SelB subfamil 99.9 8.1E-23 1.8E-27 147.3 15.6 157 22-193 1-185 (192)
154 PLN00023 GTP-binding protein; 99.9 4.2E-23 9.2E-28 156.4 14.4 133 18-150 18-187 (334)
155 PRK04213 GTP-binding protein; 99.9 1.5E-23 3.2E-28 152.2 11.3 158 19-193 7-191 (201)
156 PRK03003 GTP-binding protein D 99.9 1.2E-22 2.5E-27 164.4 17.7 157 20-193 210-381 (472)
157 cd01894 EngA1 EngA1 subfamily. 99.9 8.2E-23 1.8E-27 142.2 14.4 145 25-193 1-157 (157)
158 PRK12296 obgE GTPase CgtA; Rev 99.9 6.8E-23 1.5E-27 164.0 15.7 155 22-193 160-339 (500)
159 cd01891 TypA_BipA TypA (tyrosi 99.9 2.3E-22 5E-27 145.1 16.9 146 23-183 4-171 (194)
160 cd01895 EngA2 EngA2 subfamily. 99.9 4.4E-22 9.5E-27 140.6 17.7 156 20-192 1-173 (174)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 1.9E-22 4E-27 159.5 17.1 152 23-193 160-326 (424)
162 PRK03003 GTP-binding protein D 99.9 2.5E-22 5.5E-27 162.4 18.2 150 20-193 37-198 (472)
163 PRK05291 trmE tRNA modificatio 99.9 2.3E-22 5E-27 161.3 17.3 145 19-193 213-369 (449)
164 PF00009 GTP_EFTU: Elongation 99.9 1.1E-22 2.4E-27 146.1 13.9 157 20-194 2-187 (188)
165 PTZ00099 rab6; Provisional 99.9 1.9E-22 4.1E-27 143.1 14.1 128 48-193 8-141 (176)
166 PRK15467 ethanolamine utilizat 99.9 1.7E-22 3.7E-27 141.1 13.6 140 23-193 3-146 (158)
167 TIGR03594 GTPase_EngA ribosome 99.9 2.7E-22 5.8E-27 161.1 15.8 156 20-192 171-342 (429)
168 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.1E-22 1.3E-26 158.1 17.4 149 17-193 199-359 (442)
169 cd04163 Era Era subfamily. Er 99.9 7.8E-22 1.7E-26 138.3 15.6 154 20-193 2-168 (168)
170 COG1100 GTPase SAR1 and relate 99.9 3.5E-22 7.5E-27 146.8 14.2 171 21-193 5-184 (219)
171 TIGR00487 IF-2 translation ini 99.9 9.4E-22 2E-26 161.5 17.7 161 17-191 83-247 (587)
172 cd01888 eIF2_gamma eIF2-gamma 99.9 5.3E-22 1.2E-26 144.1 14.3 155 22-193 1-198 (203)
173 PRK11058 GTPase HflX; Provisio 99.9 1.2E-21 2.5E-26 155.8 17.2 152 22-193 198-361 (426)
174 PRK00089 era GTPase Era; Revie 99.9 1.4E-21 3E-26 149.5 16.9 155 20-193 4-170 (292)
175 PRK00454 engB GTP-binding prot 99.9 1.5E-21 3.3E-26 141.0 14.7 157 19-193 22-193 (196)
176 COG1159 Era GTPase [General fu 99.9 1.7E-21 3.7E-26 144.1 15.0 156 19-194 4-172 (298)
177 cd00880 Era_like Era (E. coli 99.9 1.5E-21 3.3E-26 135.6 13.3 151 26-193 1-163 (163)
178 PRK05306 infB translation init 99.9 4.6E-21 9.9E-26 161.1 18.5 161 17-191 286-449 (787)
179 PRK00093 GTP-binding protein D 99.9 3.1E-21 6.6E-26 155.2 16.7 146 22-191 2-159 (435)
180 PRK12298 obgE GTPase CgtA; Rev 99.9 3.4E-21 7.4E-26 151.5 15.8 157 23-193 161-332 (390)
181 TIGR03594 GTPase_EngA ribosome 99.9 6E-21 1.3E-25 153.3 17.2 147 23-193 1-159 (429)
182 COG2229 Predicted GTPase [Gene 99.9 8.9E-21 1.9E-25 130.6 15.1 157 17-192 6-176 (187)
183 KOG4252|consensus 99.9 1.7E-23 3.7E-28 142.9 1.4 157 18-193 17-180 (246)
184 TIGR03598 GTPase_YsxC ribosome 99.9 3.2E-21 6.9E-26 137.5 13.2 144 19-183 16-179 (179)
185 TIGR01393 lepA GTP-binding pro 99.9 1.1E-20 2.4E-25 155.8 17.5 152 23-193 5-179 (595)
186 CHL00189 infB translation init 99.9 1.5E-20 3.3E-25 156.7 17.9 162 17-192 240-408 (742)
187 PRK09518 bifunctional cytidyla 99.9 1.2E-20 2.6E-25 159.2 17.2 156 21-193 450-620 (712)
188 cd01896 DRG The developmentall 99.9 3.3E-20 7.1E-25 137.2 17.3 150 23-194 2-226 (233)
189 PRK00093 GTP-binding protein D 99.9 1.1E-20 2.4E-25 152.0 15.9 157 19-192 171-342 (435)
190 PRK09518 bifunctional cytidyla 99.9 2.6E-20 5.7E-25 157.2 17.7 149 21-193 275-435 (712)
191 TIGR00475 selB selenocysteine- 99.9 9E-21 1.9E-25 156.2 14.5 154 22-193 1-165 (581)
192 PRK12317 elongation factor 1-a 99.9 1.5E-20 3.1E-25 150.7 14.9 154 18-185 3-196 (425)
193 PF08477 Miro: Miro-like prote 99.9 1.1E-21 2.5E-26 130.7 6.6 109 23-133 1-119 (119)
194 TIGR00483 EF-1_alpha translati 99.9 9.4E-21 2E-25 151.8 12.9 154 17-184 3-197 (426)
195 cd01884 EF_Tu EF-Tu subfamily. 99.8 5.8E-20 1.3E-24 132.3 14.9 146 20-182 1-171 (195)
196 cd04166 CysN_ATPS CysN_ATPS su 99.8 4.9E-20 1.1E-24 134.3 14.2 148 23-184 1-184 (208)
197 PRK05433 GTP-binding protein L 99.8 1.2E-19 2.6E-24 149.9 18.0 153 22-193 8-183 (600)
198 COG1160 Predicted GTPases [Gen 99.8 7.5E-20 1.6E-24 142.4 15.0 148 22-193 4-164 (444)
199 cd04168 TetM_like Tet(M)-like 99.8 2.6E-19 5.5E-24 132.7 16.5 167 23-194 1-235 (237)
200 TIGR03680 eif2g_arch translati 99.8 7.6E-20 1.7E-24 145.4 14.3 158 19-193 2-195 (406)
201 cd01883 EF1_alpha Eukaryotic e 99.8 7.3E-20 1.6E-24 134.4 13.0 146 23-183 1-194 (219)
202 TIGR00437 feoB ferrous iron tr 99.8 6.4E-20 1.4E-24 151.4 13.7 141 28-192 1-153 (591)
203 KOG3883|consensus 99.8 4.1E-19 9E-24 118.5 14.7 157 20-193 8-174 (198)
204 TIGR00491 aIF-2 translation in 99.8 2.3E-19 5.1E-24 147.3 16.4 166 19-191 2-213 (590)
205 COG0486 ThdF Predicted GTPase 99.8 4.1E-19 8.9E-24 138.7 16.9 151 17-193 213-375 (454)
206 TIGR01394 TypA_BipA GTP-bindin 99.8 2.8E-19 6.1E-24 147.3 16.7 156 23-193 3-190 (594)
207 PRK04000 translation initiatio 99.8 2.4E-19 5.2E-24 142.6 15.5 159 18-193 6-200 (411)
208 COG1084 Predicted GTPase [Gene 99.8 7.4E-19 1.6E-23 131.4 16.4 169 4-191 150-333 (346)
209 KOG1489|consensus 99.8 1.3E-19 2.9E-24 134.5 12.2 151 23-192 198-365 (366)
210 PRK09554 feoB ferrous iron tra 99.8 3.5E-19 7.6E-24 150.3 16.0 149 20-192 2-166 (772)
211 KOG0090|consensus 99.8 1.6E-19 3.4E-24 127.1 11.5 171 22-193 39-238 (238)
212 PRK10218 GTP-binding protein; 99.8 6.1E-19 1.3E-23 145.3 16.5 157 22-193 6-194 (607)
213 PF10662 PduV-EutP: Ethanolami 99.8 3E-19 6.6E-24 120.3 11.7 136 22-191 2-143 (143)
214 PRK04004 translation initiatio 99.8 7.5E-19 1.6E-23 144.7 16.0 167 18-191 3-215 (586)
215 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.5E-23 135.1 16.6 156 20-192 177-349 (444)
216 cd04165 GTPBP1_like GTPBP1-lik 99.8 2E-18 4.2E-23 126.9 15.5 164 23-191 1-220 (224)
217 cd01876 YihA_EngB The YihA (En 99.8 1.4E-18 3E-23 122.0 13.6 154 23-193 1-170 (170)
218 PRK10512 selenocysteinyl-tRNA- 99.8 1.4E-18 3.1E-23 143.8 15.1 155 23-192 2-164 (614)
219 PRK12736 elongation factor Tu; 99.8 2.1E-18 4.6E-23 136.7 15.2 161 16-193 7-200 (394)
220 COG0532 InfB Translation initi 99.8 4.8E-18 1E-22 134.5 15.9 158 19-190 3-166 (509)
221 COG0218 Predicted GTPase [Gene 99.8 5.7E-18 1.2E-22 119.2 14.0 154 20-193 23-196 (200)
222 PF09439 SRPRB: Signal recogni 99.8 4.4E-19 9.5E-24 124.7 7.5 130 21-151 3-141 (181)
223 PRK12735 elongation factor Tu; 99.8 1.3E-17 2.8E-22 132.3 15.9 161 16-193 7-202 (396)
224 PLN03126 Elongation factor Tu; 99.8 1.4E-17 3.1E-22 134.1 15.9 155 9-180 69-248 (478)
225 TIGR00485 EF-Tu translation el 99.8 1.5E-17 3.3E-22 132.0 15.8 160 15-191 6-198 (394)
226 KOG0096|consensus 99.8 1.3E-18 2.7E-23 120.2 8.3 156 19-193 8-168 (216)
227 KOG1673|consensus 99.8 1.3E-18 2.8E-23 116.4 7.9 160 18-192 17-184 (205)
228 COG2262 HflX GTPases [General 99.8 3.2E-17 7E-22 126.1 16.5 154 19-193 190-355 (411)
229 KOG1423|consensus 99.8 2.2E-17 4.7E-22 122.4 14.6 166 18-193 69-270 (379)
230 CHL00071 tufA elongation facto 99.8 1.5E-17 3.3E-22 132.5 14.7 148 17-181 8-180 (409)
231 cd04167 Snu114p Snu114p subfam 99.8 1.4E-17 2.9E-22 121.9 13.3 108 23-135 2-136 (213)
232 PLN00043 elongation factor 1-a 99.8 2.3E-17 4.9E-22 132.3 15.1 151 17-184 3-203 (447)
233 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 6E-18 1.3E-22 123.9 10.7 163 23-193 1-175 (232)
234 PRK00049 elongation factor Tu; 99.8 2.6E-17 5.6E-22 130.6 14.1 160 16-192 7-201 (396)
235 PRK13351 elongation factor G; 99.8 6.7E-17 1.4E-21 136.5 17.1 113 20-137 7-140 (687)
236 cd01886 EF-G Elongation factor 99.7 6.8E-17 1.5E-21 121.8 14.9 109 23-136 1-130 (270)
237 PTZ00141 elongation factor 1- 99.7 3.5E-17 7.6E-22 131.3 14.1 152 17-184 3-203 (446)
238 COG0370 FeoB Fe2+ transport sy 99.7 4.3E-17 9.3E-22 132.5 14.6 145 21-192 3-162 (653)
239 KOG1145|consensus 99.7 3.9E-17 8.4E-22 129.2 13.8 161 17-191 149-313 (683)
240 cd04169 RF3 RF3 subfamily. Pe 99.7 7.6E-17 1.7E-21 121.4 14.5 121 23-148 4-152 (267)
241 TIGR02034 CysN sulfate adenyly 99.7 3.8E-17 8.1E-22 130.0 13.3 149 22-184 1-187 (406)
242 cd04104 p47_IIGP_like p47 (47- 99.7 3.5E-17 7.6E-22 118.3 12.0 160 21-193 1-183 (197)
243 PLN03127 Elongation factor Tu; 99.7 1.9E-16 4.1E-21 127.0 17.0 161 16-193 56-251 (447)
244 cd04170 EF-G_bact Elongation f 99.7 4.7E-17 1E-21 123.1 12.8 110 23-137 1-131 (268)
245 PRK05124 cysN sulfate adenylyl 99.7 3.9E-17 8.5E-22 131.9 12.4 154 18-185 24-216 (474)
246 PRK00741 prfC peptide chain re 99.7 2.1E-16 4.5E-21 128.9 16.6 124 20-148 9-160 (526)
247 cd01885 EF2 EF2 (for archaea a 99.7 2.7E-16 5.7E-21 115.2 14.9 108 23-135 2-138 (222)
248 PTZ00327 eukaryotic translatio 99.7 1.1E-16 2.4E-21 128.2 13.9 163 18-193 31-232 (460)
249 cd01899 Ygr210 Ygr210 subfamil 99.7 5.5E-16 1.2E-20 119.0 15.7 77 24-100 1-111 (318)
250 COG1163 DRG Predicted GTPase [ 99.7 4.8E-16 1E-20 116.2 14.8 150 22-193 64-288 (365)
251 PRK05506 bifunctional sulfate 99.7 2.9E-16 6.2E-21 131.4 15.1 153 18-184 21-211 (632)
252 COG5256 TEF1 Translation elong 99.7 1.5E-16 3.2E-21 122.5 11.6 155 17-184 3-201 (428)
253 PF01926 MMR_HSR1: 50S ribosom 99.7 7E-16 1.5E-20 102.3 13.6 103 23-131 1-116 (116)
254 KOG1707|consensus 99.7 6.8E-17 1.5E-21 128.6 9.7 162 17-193 5-174 (625)
255 TIGR00503 prfC peptide chain r 99.7 1.6E-15 3.6E-20 123.7 17.9 113 19-136 9-146 (527)
256 COG0536 Obg Predicted GTPase [ 99.7 2.1E-16 4.5E-21 118.9 11.2 155 23-193 161-332 (369)
257 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 4.9E-16 1.1E-20 112.3 12.6 156 22-193 1-183 (196)
258 KOG4423|consensus 99.7 1.8E-18 3.8E-23 119.1 -1.0 156 22-193 26-193 (229)
259 PRK12739 elongation factor G; 99.7 2E-15 4.4E-20 127.4 16.8 113 20-137 7-140 (691)
260 KOG0462|consensus 99.7 1.1E-15 2.4E-20 121.0 13.4 153 23-194 62-235 (650)
261 COG3596 Predicted GTPase [Gene 99.7 4.9E-16 1.1E-20 113.9 9.8 166 18-193 36-221 (296)
262 smart00275 G_alpha G protein a 99.7 1.9E-15 4.1E-20 117.5 13.7 136 52-193 171-333 (342)
263 TIGR00484 EF-G translation elo 99.7 2.9E-15 6.3E-20 126.5 15.3 111 22-137 11-142 (689)
264 cd00066 G-alpha G protein alph 99.7 2.1E-15 4.6E-20 116.3 12.8 135 52-193 148-310 (317)
265 PRK00007 elongation factor G; 99.7 8.5E-15 1.8E-19 123.6 17.0 110 22-136 11-141 (693)
266 PRK09602 translation-associate 99.6 1E-14 2.2E-19 115.2 15.2 78 22-99 2-113 (396)
267 PRK12740 elongation factor G; 99.6 1.5E-14 3.3E-19 122.1 15.8 105 27-136 1-126 (668)
268 KOG1191|consensus 99.6 7E-15 1.5E-19 115.3 12.3 164 17-193 264-449 (531)
269 PRK09866 hypothetical protein; 99.6 3.3E-14 7.2E-19 115.8 16.5 114 65-191 230-350 (741)
270 PRK13768 GTPase; Provisional 99.6 9.3E-15 2E-19 109.4 11.1 128 65-193 97-246 (253)
271 COG0481 LepA Membrane GTPase L 99.6 1.7E-14 3.6E-19 112.9 11.4 153 23-194 11-186 (603)
272 KOG1532|consensus 99.6 5.6E-15 1.2E-19 108.2 7.8 177 14-193 12-263 (366)
273 PRK14845 translation initiatio 99.6 9.2E-14 2E-18 120.0 14.6 153 32-191 472-670 (1049)
274 KOG1490|consensus 99.6 2.3E-14 4.9E-19 112.7 9.3 170 5-192 151-339 (620)
275 PF03029 ATP_bind_1: Conserved 99.5 1.4E-14 3E-19 107.3 7.3 125 66-193 92-236 (238)
276 COG1217 TypA Predicted membran 99.5 1.4E-13 3E-18 107.5 12.9 156 23-193 7-194 (603)
277 cd01850 CDC_Septin CDC/Septin. 99.5 6.7E-14 1.4E-18 106.0 10.9 110 21-136 4-157 (276)
278 cd01882 BMS1 Bms1. Bms1 is an 99.5 2E-13 4.4E-18 100.6 13.2 146 16-180 34-182 (225)
279 COG5257 GCD11 Translation init 99.5 8.9E-14 1.9E-18 104.1 11.0 159 19-194 8-202 (415)
280 KOG0082|consensus 99.5 2.4E-13 5.2E-18 104.3 11.2 142 52-193 182-343 (354)
281 COG2895 CysN GTPases - Sulfate 99.5 1.3E-13 2.8E-18 104.4 9.5 151 19-183 4-192 (431)
282 COG4917 EutP Ethanolamine util 99.5 7.7E-14 1.7E-18 90.4 7.2 138 22-191 2-143 (148)
283 TIGR00490 aEF-2 translation el 99.5 4.3E-13 9.4E-18 113.7 13.7 124 19-147 17-166 (720)
284 PF04548 AIG1: AIG1 family; I 99.5 2.4E-13 5.1E-18 99.4 10.5 116 22-140 1-134 (212)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.4E-12 5.3E-17 97.6 16.2 132 11-143 27-176 (313)
286 PTZ00258 GTP-binding protein; 99.5 1.1E-12 2.4E-17 102.9 14.2 81 19-99 19-126 (390)
287 cd01853 Toc34_like Toc34-like 99.5 1.4E-12 3.1E-17 97.1 13.5 119 17-136 27-163 (249)
288 PRK09435 membrane ATPase/prote 99.5 2.5E-12 5.5E-17 99.1 13.5 113 63-193 147-259 (332)
289 PRK07560 elongation factor EF- 99.4 6.2E-12 1.4E-16 107.0 15.9 113 19-136 18-153 (731)
290 KOG0458|consensus 99.4 4.4E-13 9.6E-18 107.2 8.2 158 19-185 175-373 (603)
291 TIGR00101 ureG urease accessor 99.4 5.7E-12 1.2E-16 91.1 12.6 102 65-193 92-195 (199)
292 TIGR00750 lao LAO/AO transport 99.4 1.6E-11 3.6E-16 94.2 14.4 163 8-192 20-236 (300)
293 TIGR00157 ribosome small subun 99.4 1.9E-12 4.2E-17 96.4 8.7 96 76-192 24-121 (245)
294 PRK09601 GTP-binding protein Y 99.4 2.2E-11 4.8E-16 94.6 14.6 78 22-99 3-107 (364)
295 PLN00116 translation elongatio 99.4 6.7E-12 1.5E-16 108.1 12.5 113 18-135 16-163 (843)
296 PTZ00416 elongation factor 2; 99.4 7.2E-12 1.6E-16 107.8 12.2 111 20-135 18-157 (836)
297 COG3276 SelB Selenocysteine-sp 99.4 9.4E-12 2E-16 97.0 11.1 154 23-193 2-161 (447)
298 KOG1144|consensus 99.4 5E-12 1.1E-16 103.7 9.8 166 19-192 473-685 (1064)
299 PF03308 ArgK: ArgK protein; 99.3 8.4E-13 1.8E-17 96.9 4.5 153 18-192 26-228 (266)
300 PF05049 IIGP: Interferon-indu 99.3 1.5E-11 3.2E-16 95.7 10.3 167 6-193 22-217 (376)
301 COG1703 ArgK Putative periplas 99.3 1.2E-11 2.7E-16 92.1 9.3 163 10-192 39-252 (323)
302 COG0050 TufB GTPases - transla 99.3 2.5E-11 5.4E-16 90.1 10.7 162 15-193 6-200 (394)
303 PF00503 G-alpha: G-protein al 99.3 9.6E-12 2.1E-16 98.9 9.2 135 53-193 223-389 (389)
304 cd01900 YchF YchF subfamily. 99.3 3.5E-11 7.6E-16 90.6 11.6 76 24-99 1-103 (274)
305 TIGR00073 hypB hydrogenase acc 99.3 1.6E-11 3.6E-16 89.4 9.5 57 122-193 148-206 (207)
306 COG0378 HypB Ni2+-binding GTPa 99.3 4.7E-11 1E-15 83.9 9.8 79 90-193 119-200 (202)
307 PF05783 DLIC: Dynein light in 99.3 1.8E-10 4E-15 92.6 14.4 100 4-105 6-117 (472)
308 smart00010 small_GTPase Small 99.3 1.4E-11 3E-16 82.2 6.2 89 22-136 1-91 (124)
309 COG0480 FusA Translation elong 99.3 1E-10 2.2E-15 97.9 12.2 125 20-149 9-158 (697)
310 KOG0410|consensus 99.2 6.6E-11 1.4E-15 89.0 9.6 152 14-192 170-339 (410)
311 KOG0461|consensus 99.2 1.3E-10 2.9E-15 88.1 11.1 158 20-193 6-192 (522)
312 COG0012 Predicted GTPase, prob 99.2 2.7E-10 5.8E-15 87.7 12.8 80 21-100 2-109 (372)
313 PRK10463 hydrogenase nickel in 99.2 2.7E-10 5.9E-15 85.9 12.4 57 122-193 230-288 (290)
314 KOG3905|consensus 99.2 2.7E-10 5.8E-15 85.8 12.0 155 20-193 51-289 (473)
315 TIGR02836 spore_IV_A stage IV 99.2 1.2E-09 2.5E-14 85.6 15.5 164 4-191 3-234 (492)
316 KOG3886|consensus 99.2 4.7E-11 1E-15 85.7 6.1 119 20-140 3-134 (295)
317 KOG0085|consensus 99.2 3.1E-11 6.7E-16 86.9 4.0 135 58-192 192-347 (359)
318 KOG3887|consensus 99.1 4.2E-10 9E-15 81.6 9.1 162 22-193 28-201 (347)
319 smart00053 DYNc Dynamin, GTPas 99.1 8.5E-09 1.8E-13 76.3 15.9 125 8-136 11-206 (240)
320 COG4108 PrfC Peptide chain rel 99.1 6.6E-10 1.4E-14 86.7 10.3 124 21-149 12-163 (528)
321 PF00350 Dynamin_N: Dynamin fa 99.1 8.1E-10 1.7E-14 77.7 9.8 64 65-132 101-168 (168)
322 KOG0468|consensus 99.1 3.3E-10 7.1E-15 92.3 8.1 111 20-135 127-262 (971)
323 cd01859 MJ1464 MJ1464. This f 99.1 4.7E-10 1E-14 78.1 7.9 92 80-193 4-95 (156)
324 TIGR00993 3a0901s04IAP86 chlor 99.1 2.5E-09 5.4E-14 88.1 12.5 116 21-136 118-250 (763)
325 PF00735 Septin: Septin; Inte 99.1 5.7E-10 1.2E-14 84.7 7.9 110 21-136 4-156 (281)
326 PRK12289 GTPase RsgA; Reviewed 99.0 8.3E-10 1.8E-14 86.1 8.1 91 81-192 82-173 (352)
327 KOG1707|consensus 99.0 6.5E-09 1.4E-13 83.8 12.8 149 18-191 422-580 (625)
328 cd01855 YqeH YqeH. YqeH is an 99.0 1.6E-09 3.5E-14 77.9 8.6 100 78-193 24-124 (190)
329 KOG0705|consensus 99.0 5.9E-10 1.3E-14 89.0 5.9 157 15-192 24-187 (749)
330 KOG0460|consensus 99.0 2.3E-09 4.9E-14 81.3 8.7 161 17-193 50-244 (449)
331 PRK00098 GTPase RsgA; Reviewed 99.0 1.9E-09 4.1E-14 82.8 7.4 87 85-191 77-164 (298)
332 KOG1486|consensus 99.0 1.9E-08 4.1E-13 73.6 11.7 82 21-102 62-153 (364)
333 COG5192 BMS1 GTP-binding prote 98.9 9.7E-09 2.1E-13 82.8 10.2 123 19-149 67-191 (1077)
334 cd01854 YjeQ_engC YjeQ/EngC. 98.9 4.6E-09 1E-13 80.2 8.0 88 83-191 73-161 (287)
335 PRK12288 GTPase RsgA; Reviewed 98.9 1.3E-08 2.8E-13 79.5 9.0 89 86-192 118-206 (347)
336 cd01858 NGP_1 NGP-1. Autoanti 98.9 1.4E-08 3E-13 70.8 7.9 55 20-74 101-156 (157)
337 KOG0099|consensus 98.8 2.1E-08 4.5E-13 73.7 8.2 83 54-136 191-283 (379)
338 cd01858 NGP_1 NGP-1. Autoanti 98.8 2E-08 4.3E-13 70.0 7.7 89 85-192 5-93 (157)
339 COG5258 GTPBP1 GTPase [General 98.8 3.7E-08 8.1E-13 76.0 9.5 168 18-190 114-335 (527)
340 cd04178 Nucleostemin_like Nucl 98.8 1.3E-08 2.9E-13 71.8 6.4 56 19-75 115-172 (172)
341 KOG0466|consensus 98.8 5E-09 1.1E-13 78.5 4.3 161 20-194 37-241 (466)
342 cd01856 YlqF YlqF. Proteins o 98.8 2.1E-08 4.5E-13 70.9 6.8 89 80-192 11-99 (171)
343 KOG0459|consensus 98.8 3.7E-09 8.1E-14 81.8 2.9 162 19-187 77-279 (501)
344 TIGR00092 GTP-binding protein 98.8 7E-08 1.5E-12 75.4 10.0 79 22-100 3-109 (368)
345 KOG1954|consensus 98.8 1.2E-07 2.6E-12 73.0 10.8 123 21-150 58-236 (532)
346 cd01859 MJ1464 MJ1464. This f 98.8 6.2E-08 1.3E-12 67.4 8.7 58 18-75 98-156 (156)
347 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 2.5E-08 5.5E-13 68.2 6.6 53 22-75 84-138 (141)
348 cd01849 YlqF_related_GTPase Yl 98.8 4.5E-08 9.8E-13 68.0 7.9 82 90-192 1-83 (155)
349 KOG1143|consensus 98.8 4.8E-08 1E-12 75.2 8.2 163 20-187 166-381 (591)
350 TIGR03597 GTPase_YqeH ribosome 98.7 2.7E-08 6E-13 78.3 7.0 100 75-191 50-150 (360)
351 TIGR03596 GTPase_YlqF ribosome 98.7 4.3E-08 9.4E-13 74.5 7.7 97 73-193 5-102 (276)
352 KOG1491|consensus 98.7 7E-08 1.5E-12 73.4 8.3 86 15-100 14-126 (391)
353 KOG2486|consensus 98.7 7.3E-08 1.6E-12 71.4 8.0 158 19-191 134-313 (320)
354 KOG1487|consensus 98.7 5.8E-08 1.3E-12 71.3 7.4 149 23-193 61-280 (358)
355 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.4E-08 1.2E-12 66.6 6.8 79 83-181 6-84 (141)
356 PRK09563 rbgA GTPase YlqF; Rev 98.7 7.6E-08 1.6E-12 73.6 6.9 58 18-76 118-177 (287)
357 COG5019 CDC3 Septin family pro 98.7 2.8E-07 6.1E-12 70.9 9.9 121 19-145 21-185 (373)
358 TIGR03596 GTPase_YlqF ribosome 98.6 8.4E-08 1.8E-12 73.0 6.4 56 19-75 116-173 (276)
359 COG1618 Predicted nucleotide k 98.6 1.8E-06 3.9E-11 59.2 11.9 25 19-43 3-27 (179)
360 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.3E-07 2.8E-12 72.3 7.2 97 72-192 7-104 (287)
361 KOG2655|consensus 98.6 2.9E-07 6.3E-12 71.3 8.9 115 20-140 20-176 (366)
362 KOG0447|consensus 98.6 2.3E-06 4.9E-11 69.3 14.0 132 15-149 302-508 (980)
363 COG1161 Predicted GTPases [Gen 98.6 1E-07 2.2E-12 73.9 6.4 63 14-76 125-188 (322)
364 cd01855 YqeH YqeH. YqeH is an 98.6 1.4E-07 3.1E-12 67.7 6.7 55 20-75 126-190 (190)
365 cd01856 YlqF YlqF. Proteins o 98.6 1.5E-07 3.2E-12 66.6 6.0 57 18-75 112-170 (171)
366 KOG0465|consensus 98.6 2.7E-07 5.8E-12 75.1 8.1 112 21-137 39-171 (721)
367 KOG1547|consensus 98.6 6.3E-07 1.4E-11 65.3 8.8 123 20-147 45-209 (336)
368 KOG1534|consensus 98.5 1.2E-07 2.6E-12 67.7 4.6 127 65-192 98-249 (273)
369 cd01849 YlqF_related_GTPase Yl 98.5 2.5E-07 5.5E-12 64.3 6.0 55 18-75 97-155 (155)
370 cd01851 GBP Guanylate-binding 98.5 6.9E-07 1.5E-11 65.9 8.5 84 19-102 5-105 (224)
371 KOG0464|consensus 98.4 1E-07 2.2E-12 74.5 2.3 120 23-147 39-182 (753)
372 TIGR03348 VI_IcmF type VI secr 98.4 3.4E-06 7.3E-11 75.8 11.5 110 24-136 114-257 (1169)
373 KOG0448|consensus 98.4 1.5E-05 3.2E-10 66.1 13.1 114 18-136 106-275 (749)
374 KOG0467|consensus 98.4 9.3E-07 2E-11 73.6 6.3 107 23-134 11-136 (887)
375 cd03112 CobW_like The function 98.4 1.5E-06 3.3E-11 60.6 6.5 21 24-44 3-23 (158)
376 PRK13796 GTPase YqeH; Provisio 98.3 3.1E-06 6.8E-11 66.8 8.8 98 77-192 58-157 (365)
377 PF09547 Spore_IV_A: Stage IV 98.3 2.3E-05 5E-10 61.9 12.9 40 2-44 1-40 (492)
378 PF03193 DUF258: Protein of un 98.3 2.8E-07 6.1E-12 63.9 2.0 55 22-77 36-99 (161)
379 PRK12288 GTPase RsgA; Reviewed 98.3 9.8E-07 2.1E-11 69.0 4.9 55 23-78 207-270 (347)
380 KOG0463|consensus 98.3 5.4E-06 1.2E-10 64.3 8.6 164 20-188 132-352 (641)
381 COG0523 Putative GTPases (G3E 98.3 8.9E-06 1.9E-10 62.9 9.6 122 24-151 4-174 (323)
382 TIGR03597 GTPase_YqeH ribosome 98.3 2.2E-06 4.8E-11 67.6 6.2 111 21-136 154-280 (360)
383 PRK11537 putative GTP-binding 98.3 1.1E-05 2.4E-10 62.5 9.8 75 66-149 92-175 (318)
384 PRK01889 GTPase RsgA; Reviewed 98.3 9.2E-06 2E-10 64.0 9.4 84 86-190 110-193 (356)
385 PRK10416 signal recognition pa 98.2 4.9E-06 1.1E-10 64.4 7.7 66 64-136 196-273 (318)
386 PRK12289 GTPase RsgA; Reviewed 98.2 2.6E-06 5.6E-11 66.7 5.8 54 23-77 174-236 (352)
387 PRK13796 GTPase YqeH; Provisio 98.2 3.1E-06 6.8E-11 66.8 6.2 56 20-76 159-221 (365)
388 PRK14974 cell division protein 98.2 1.3E-05 2.9E-10 62.3 9.6 66 64-136 222-293 (336)
389 TIGR00157 ribosome small subun 98.2 2.7E-06 5.8E-11 63.6 4.4 52 22-77 121-183 (245)
390 COG1162 Predicted GTPases [Gen 98.1 2.1E-05 4.6E-10 59.7 8.7 91 83-193 74-166 (301)
391 TIGR00064 ftsY signal recognit 98.1 2.9E-05 6.3E-10 58.9 9.4 67 63-136 153-231 (272)
392 TIGR01425 SRP54_euk signal rec 98.1 4.5E-05 9.7E-10 61.1 10.4 66 64-136 182-253 (429)
393 cd03114 ArgK-like The function 98.1 2.5E-05 5.5E-10 53.8 8.0 58 64-133 91-148 (148)
394 COG1162 Predicted GTPases [Gen 98.1 4E-06 8.7E-11 63.5 4.0 23 23-45 166-188 (301)
395 cd03222 ABC_RNaseL_inhibitor T 98.1 5.6E-05 1.2E-09 53.7 9.6 40 20-67 24-63 (177)
396 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.2E-05 2.6E-10 61.5 5.3 56 22-78 162-226 (287)
397 KOG1424|consensus 98.0 1E-05 2.2E-10 64.9 4.9 56 20-76 313-370 (562)
398 TIGR02475 CobW cobalamin biosy 98.0 6.4E-05 1.4E-09 58.9 9.0 78 66-149 94-200 (341)
399 COG1126 GlnQ ABC-type polar am 97.9 9.3E-06 2E-10 58.5 3.6 47 11-65 17-64 (240)
400 PRK00098 GTPase RsgA; Reviewed 97.9 1.9E-05 4.2E-10 60.7 5.6 56 21-77 164-228 (298)
401 COG4559 ABC-type hemin transpo 97.9 6.5E-06 1.4E-10 59.2 2.7 35 10-44 15-50 (259)
402 KOG2423|consensus 97.9 1.1E-05 2.4E-10 62.9 3.8 70 5-76 292-363 (572)
403 COG1116 TauB ABC-type nitrate/ 97.9 1E-05 2.2E-10 59.5 3.4 37 11-47 18-55 (248)
404 PF06858 NOG1: Nucleolar GTP-b 97.9 9.8E-05 2.1E-09 41.7 6.5 48 84-133 9-58 (58)
405 cd03115 SRP The signal recogni 97.9 3.2E-05 7E-10 54.6 5.8 66 64-136 82-153 (173)
406 PRK14722 flhF flagellar biosyn 97.9 9.6E-05 2.1E-09 58.3 8.2 24 20-43 136-159 (374)
407 PRK13695 putative NTPase; Prov 97.8 0.00044 9.5E-09 48.9 10.8 22 22-43 1-22 (174)
408 cd03110 Fer4_NifH_child This p 97.8 0.0011 2.4E-08 47.0 12.9 79 63-149 91-169 (179)
409 COG3839 MalK ABC-type sugar tr 97.8 2.3E-05 4.9E-10 60.8 4.4 34 11-44 18-52 (338)
410 KOG2484|consensus 97.8 1.7E-05 3.7E-10 61.8 3.5 57 19-76 250-308 (435)
411 PF03215 Rad17: Rad17 cell cyc 97.8 0.00042 9.2E-09 57.2 11.6 39 6-44 29-68 (519)
412 COG1136 SalX ABC-type antimicr 97.8 3.2E-05 7E-10 56.6 4.6 34 11-44 20-54 (226)
413 COG4525 TauB ABC-type taurine 97.8 4.4E-05 9.5E-10 54.4 5.1 36 9-44 18-54 (259)
414 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.0004 8.6E-09 43.6 9.1 97 24-130 2-99 (99)
415 PRK12727 flagellar biosynthesi 97.8 0.00039 8.5E-09 57.1 10.8 110 20-136 349-498 (559)
416 COG1117 PstB ABC-type phosphat 97.8 2E-05 4.4E-10 56.8 3.1 35 10-44 21-56 (253)
417 COG1120 FepC ABC-type cobalami 97.8 1.7E-05 3.6E-10 59.2 2.6 34 11-44 17-51 (258)
418 COG2884 FtsE Predicted ATPase 97.8 4.2E-05 9E-10 54.2 4.4 48 11-66 17-65 (223)
419 COG3523 IcmF Type VI protein s 97.8 5.9E-05 1.3E-09 66.9 6.1 111 24-136 128-270 (1188)
420 PRK04195 replication factor C 97.7 8.4E-05 1.8E-09 61.1 6.5 38 7-44 25-62 (482)
421 PRK07261 topology modulation p 97.7 9.8E-05 2.1E-09 52.2 6.0 23 22-44 1-23 (171)
422 KOG3859|consensus 97.7 9.3E-05 2E-09 55.4 5.9 55 21-75 42-105 (406)
423 PF13207 AAA_17: AAA domain; P 97.7 3.2E-05 6.9E-10 51.2 3.1 22 23-44 1-22 (121)
424 PRK11889 flhF flagellar biosyn 97.7 0.00056 1.2E-08 54.3 10.3 110 20-136 240-391 (436)
425 COG3842 PotA ABC-type spermidi 97.7 3.7E-05 8.1E-10 59.9 3.7 35 12-46 21-56 (352)
426 COG4619 ABC-type uncharacteriz 97.7 8E-05 1.7E-09 51.8 4.9 50 11-68 18-68 (223)
427 PRK05703 flhF flagellar biosyn 97.7 0.0019 4.2E-08 52.1 13.1 76 64-148 299-381 (424)
428 PF13555 AAA_29: P-loop contai 97.7 2E-05 4.3E-10 45.6 1.2 21 23-43 25-45 (62)
429 cd02038 FleN-like FleN is a me 97.6 0.00098 2.1E-08 45.4 9.7 99 26-134 5-109 (139)
430 KOG1533|consensus 97.6 5.7E-05 1.2E-09 55.1 3.6 69 65-136 97-177 (290)
431 PF00005 ABC_tran: ABC transpo 97.6 8.7E-05 1.9E-09 50.2 4.3 23 22-44 12-34 (137)
432 PRK08118 topology modulation p 97.6 4.8E-05 1E-09 53.5 3.0 22 23-44 3-24 (167)
433 COG0563 Adk Adenylate kinase a 97.6 5.4E-05 1.2E-09 53.8 3.2 23 22-44 1-23 (178)
434 TIGR01166 cbiO cobalt transpor 97.6 7.9E-05 1.7E-09 53.5 4.1 48 11-66 7-55 (190)
435 COG3638 ABC-type phosphate/pho 97.6 8.2E-05 1.8E-09 54.4 4.1 45 12-64 20-65 (258)
436 cd00009 AAA The AAA+ (ATPases 97.6 0.00083 1.8E-08 45.3 9.0 25 20-44 18-42 (151)
437 COG1101 PhnK ABC-type uncharac 97.6 0.00013 2.9E-09 52.7 5.0 51 9-67 19-70 (263)
438 COG1127 Ttg2A ABC-type transpo 97.6 3.8E-05 8.2E-10 56.3 2.0 36 11-46 23-59 (263)
439 COG1135 AbcC ABC-type metal io 97.6 4.6E-05 9.9E-10 57.9 2.5 60 13-80 23-83 (339)
440 PF00004 AAA: ATPase family as 97.6 5.8E-05 1.3E-09 50.5 2.8 21 24-44 1-21 (132)
441 PF05729 NACHT: NACHT domain 97.6 0.00055 1.2E-08 47.5 7.8 21 24-44 3-23 (166)
442 PRK12726 flagellar biosynthesi 97.6 0.00052 1.1E-08 54.2 8.1 23 21-43 206-228 (407)
443 COG1125 OpuBA ABC-type proline 97.6 9.9E-05 2.1E-09 54.7 3.9 52 12-71 17-69 (309)
444 TIGR03574 selen_PSTK L-seryl-t 97.6 0.00069 1.5E-08 50.8 8.7 21 24-44 2-22 (249)
445 PRK14721 flhF flagellar biosyn 97.6 0.00046 9.9E-09 55.4 8.0 24 20-43 190-213 (420)
446 cd03259 ABC_Carb_Solutes_like 97.5 0.00011 2.4E-09 53.7 4.1 34 11-44 15-49 (213)
447 cd03225 ABC_cobalt_CbiO_domain 97.5 9.9E-05 2.1E-09 53.9 3.7 34 11-44 16-50 (211)
448 KOG2485|consensus 97.5 0.0003 6.4E-09 53.5 6.2 71 6-76 127-207 (335)
449 PF13671 AAA_33: AAA domain; P 97.5 8E-05 1.7E-09 50.7 3.0 21 24-44 2-22 (143)
450 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00018 3.8E-09 52.8 5.0 34 11-44 19-53 (218)
451 COG0396 sufC Cysteine desulfur 97.5 0.00012 2.7E-09 53.3 4.0 36 9-44 17-53 (251)
452 COG1419 FlhF Flagellar GTP-bin 97.5 0.0018 3.9E-08 51.3 10.7 108 21-136 203-352 (407)
453 cd03264 ABC_drug_resistance_li 97.5 0.00011 2.4E-09 53.7 3.8 33 12-44 16-48 (211)
454 PRK10751 molybdopterin-guanine 97.5 0.00033 7.1E-09 49.4 6.0 48 23-76 8-55 (173)
455 cd03261 ABC_Org_Solvent_Resist 97.5 0.0002 4.3E-09 53.2 5.3 33 12-44 16-49 (235)
456 TIGR00960 3a0501s02 Type II (G 97.5 0.00019 4.1E-09 52.6 5.1 34 11-44 18-52 (216)
457 cd03111 CpaE_like This protein 97.5 0.0023 5E-08 41.4 9.6 100 25-131 3-106 (106)
458 COG1124 DppF ABC-type dipeptid 97.5 0.00012 2.6E-09 53.8 3.9 37 10-46 21-58 (252)
459 PRK00771 signal recognition pa 97.5 0.00089 1.9E-08 54.1 9.2 24 20-43 94-117 (437)
460 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00021 4.6E-09 51.9 5.1 34 11-44 15-49 (205)
461 cd04178 Nucleostemin_like Nucl 97.5 0.00023 5E-09 50.3 5.1 44 90-136 1-44 (172)
462 TIGR02673 FtsE cell division A 97.5 0.00013 2.9E-09 53.3 4.0 34 11-44 17-51 (214)
463 cd03263 ABC_subfamily_A The AB 97.5 0.00012 2.6E-09 53.7 3.8 34 11-44 17-51 (220)
464 TIGR02315 ABC_phnC phosphonate 97.5 0.00013 2.8E-09 54.5 3.9 34 11-44 17-51 (243)
465 COG3840 ThiQ ABC-type thiamine 97.5 0.00015 3.2E-09 51.2 3.8 24 23-46 27-50 (231)
466 COG1131 CcmA ABC-type multidru 97.5 0.00014 2.9E-09 55.9 4.0 34 11-44 20-54 (293)
467 cd03292 ABC_FtsE_transporter F 97.5 0.00026 5.6E-09 51.8 5.3 34 11-44 16-50 (214)
468 cd03257 ABC_NikE_OppD_transpor 97.5 0.00014 3E-09 53.7 3.9 34 11-44 20-54 (228)
469 PRK10867 signal recognition pa 97.5 0.00074 1.6E-08 54.5 8.0 65 64-135 183-253 (433)
470 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00027 5.9E-09 51.9 5.2 34 11-44 19-53 (220)
471 cd03224 ABC_TM1139_LivF_branch 97.4 0.00024 5.3E-09 52.2 4.9 34 11-44 15-49 (222)
472 cd02019 NK Nucleoside/nucleoti 97.4 0.00013 2.8E-09 43.4 2.8 21 24-44 2-22 (69)
473 PRK11629 lolD lipoprotein tran 97.4 0.00026 5.6E-09 52.5 5.1 34 11-44 24-58 (233)
474 COG4615 PvdE ABC-type sideroph 97.4 0.00017 3.7E-09 56.7 4.1 90 15-115 342-432 (546)
475 KOG0734|consensus 97.4 0.0012 2.5E-08 54.0 8.9 117 3-129 318-444 (752)
476 TIGR03608 L_ocin_972_ABC putat 97.4 0.0003 6.5E-09 51.1 5.3 33 12-44 14-47 (206)
477 cd03258 ABC_MetN_methionine_tr 97.4 0.00027 5.9E-09 52.4 5.1 34 11-44 20-54 (233)
478 cd03215 ABC_Carb_Monos_II This 97.4 0.00022 4.7E-09 50.9 4.4 33 12-44 16-49 (182)
479 COG0410 LivF ABC-type branched 97.4 0.00016 3.6E-09 52.7 3.6 47 12-66 19-66 (237)
480 KOG0469|consensus 97.4 0.00074 1.6E-08 54.7 7.5 129 16-149 14-180 (842)
481 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00069 1.5E-08 46.4 6.6 43 14-64 18-61 (144)
482 cd00267 ABC_ATPase ABC (ATP-bi 97.4 0.0015 3.3E-08 45.3 8.4 31 14-44 17-48 (157)
483 cd03216 ABC_Carb_Monos_I This 97.4 0.00034 7.4E-09 49.0 5.1 33 12-44 16-49 (163)
484 cd03218 ABC_YhbG The ABC trans 97.4 0.0003 6.5E-09 52.1 5.1 34 11-44 15-49 (232)
485 PF05621 TniB: Bacterial TniB 97.4 0.0024 5.2E-08 48.8 9.8 125 16-149 56-207 (302)
486 cd03265 ABC_DrrA DrrA is the A 97.4 0.00033 7.3E-09 51.4 5.2 34 11-44 15-49 (220)
487 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00032 6.9E-09 54.9 5.2 39 4-44 63-101 (361)
488 PRK13543 cytochrome c biogenes 97.4 0.00033 7.1E-09 51.3 5.1 34 11-44 26-60 (214)
489 TIGR02858 spore_III_AA stage I 97.4 0.00033 7.2E-09 53.1 5.2 42 22-71 112-153 (270)
490 cd03262 ABC_HisP_GlnQ_permease 97.4 0.00037 8E-09 50.9 5.3 33 12-44 16-49 (213)
491 TIGR02211 LolD_lipo_ex lipopro 97.4 0.00038 8.2E-09 51.1 5.4 34 11-44 20-54 (221)
492 cd03269 ABC_putative_ATPase Th 97.4 0.00032 6.9E-09 51.2 4.9 33 12-44 16-49 (210)
493 cd03229 ABC_Class3 This class 97.4 0.00047 1E-08 49.0 5.7 33 12-44 16-49 (178)
494 cd03301 ABC_MalK_N The N-termi 97.4 0.00036 7.8E-09 51.0 5.2 34 11-44 15-49 (213)
495 TIGR01189 ccmA heme ABC export 97.4 0.00037 8.1E-09 50.3 5.2 32 13-44 17-49 (198)
496 cd03230 ABC_DR_subfamily_A Thi 97.4 0.0004 8.7E-09 49.1 5.3 33 12-44 16-49 (173)
497 cd03254 ABCC_Glucan_exporter_l 97.4 0.0002 4.3E-09 52.9 3.9 34 11-44 18-52 (229)
498 cd03266 ABC_NatA_sodium_export 97.4 0.00034 7.4E-09 51.3 5.1 34 11-44 20-54 (218)
499 cd03219 ABC_Mj1267_LivG_branch 97.4 0.00031 6.6E-09 52.2 4.9 34 11-44 15-49 (236)
500 PRK12724 flagellar biosynthesi 97.4 0.00098 2.1E-08 53.3 7.8 108 22-136 224-373 (432)
No 1
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=5.6e-35 Score=208.64 Aligned_cols=164 Identities=34% Similarity=0.588 Sum_probs=144.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+.++|+++|.+|||||||++++....+..+.||.+.+...++..+..+.+||+||+++++..+..+++++|++|+|+|
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D 93 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 36678999999999999999999998888878899999888888889999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++.+++.....++..++......+.|++|++||+|++...+.+++.+.++... ...+.+.+++|||+
T Consensus 94 ~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~------------~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCAT 161 (181)
T ss_pred CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCceEEEeccCC
Confidence 999999999988888887665556899999999999988888888888776433 33455678899999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|+|++++|+||.+++
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998875
No 2
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=3.3e-35 Score=208.69 Aligned_cols=174 Identities=43% Similarity=0.725 Sum_probs=161.2
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhh
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP 87 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 87 (194)
|.++++.+....++.+|+++|++||||||+++++.......+.||.+.+...+.+.+..+.+||.+|+..++..|..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 57788888877999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC-C
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ-M 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (194)
++|++|||+|+++.+.+.+....+.+++.+....++|++|++||+|++.....+++...+.... .. .
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~------------l~~~ 148 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK------------LKNK 148 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG------------TTSS
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh------------cccC
Confidence 9999999999999999999999999999987778899999999999999899999999887654 33 6
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.++.|||.+|+|+.+.++||.++|
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 778999999999999999999999875
No 3
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=8e-35 Score=205.58 Aligned_cols=162 Identities=30% Similarity=0.575 Sum_probs=142.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++....+..+.||.+.+...+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 56789999999999999999999988887788899988887888889999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.+...++.+++.....++.|+++++||+|+.+....+++.+.++... .....+.++++||++
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAk~ 154 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATS 154 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCc------------cCCCcEEEEEeeCCC
Confidence 99999999999998888765456799999999999987777788888775433 333456899999999
Q ss_pred CCChHHHHHHHhhh
Q psy2159 179 RQGFGNGFRWLANY 192 (194)
Q Consensus 179 ~~~v~~l~~~l~~~ 192 (194)
|.|++++|+||.++
T Consensus 155 g~gv~~~~~~l~~~ 168 (168)
T cd04149 155 GDGLYEGLTWLSSN 168 (168)
T ss_pred CCChHHHHHHHhcC
Confidence 99999999999763
No 4
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=3.1e-34 Score=205.03 Aligned_cols=164 Identities=33% Similarity=0.603 Sum_probs=142.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.+..++|+++|++|||||||++++..+.+..+.||.+.+...+...+..+.+||+||+++++..+..+++++|++|+|+|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45678999999999999999999988888778889998888888888999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++++++.....++.+++......+.|++|++||.|+.+....+++...+.... ...+.+.++++||+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHS------------VRQRNWYIQGCCAT 161 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCc------------ccCCcEEEEeeeCC
Confidence 999999999988888887654556789999999999987666777777665432 33445778899999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|+|++++|+||.+.+
T Consensus 162 tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 162 TAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 5
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=8.7e-34 Score=204.13 Aligned_cols=189 Identities=63% Similarity=1.076 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++-++-..+..++...+..+++++|++|||||||++++.+..+..+.||.++....+.+++..+.+||+||+.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 45566778999999999999999999999999999999998888888999999889999999999999999999988889
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++++|++++|+|+++.+++.....++..++......+.|+++++||+|+......+++++.++........ .....+
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKV 160 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccc
Confidence 9999999999999999988898888888888776555779999999999998777888888888653311111 000111
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.+.+++|||++|+|++++|+||.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 123447899999999999999999998864
No 6
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=3.2e-34 Score=203.81 Aligned_cols=163 Identities=33% Similarity=0.596 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
..+++|+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 55789999999999999999999877777788899988877888889999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.+++....++..++......+.|++|++||+|+.+..+.+++...++... ...+.+.++++||++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHS------------IRDRNWYIQPTCATS 158 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccc------------cCCCcEEEEEeeCCC
Confidence 99999999999999987765556799999999999987767777777765433 334567788999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|+|++++|+||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 7
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.9e-34 Score=203.07 Aligned_cols=183 Identities=62% Similarity=1.052 Sum_probs=155.5
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
.||..++..++...+..+|+++|++|||||||++++.+..+..+.||.+++.+.+..++..+.+||+||+..++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 46777777666668899999999999999999999999888777889999888888899999999999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+.++|++++|+|++++.++.....++..+++.....+.|+++++||+|++...+.+++.+.++........ ....
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~-----~~~~ 156 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK-----GKVG 156 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc-----cccC
Confidence 99999999999999998898888888888765555689999999999998888889999888654311110 0113
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+.+++|||++|+|++++++||.+++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhhC
Confidence 4568899999999999999999998764
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=5.8e-34 Score=199.52 Aligned_cols=158 Identities=34% Similarity=0.602 Sum_probs=135.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+||+++|.+|||||||++++....+..+.||.+.+...+......+.+||+||++++...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788999988888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..++......+.|+++++||+|+.+....+++...+.... ...+.+.++++||++|+|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHS------------LRNRNWYIQATCATSGDG 148 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCCEEEEEeeCCCCCC
Confidence 99999999898887665556789999999999977656666666553322 233456789999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 9
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=1.3e-33 Score=200.44 Aligned_cols=170 Identities=33% Similarity=0.574 Sum_probs=146.2
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
+++...+......+|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++.++..+..+++++
T Consensus 3 ~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 3 TIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred hhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 34556666778899999999999999999999988777788898888888888889999999999999988899999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.++.....++..++......+.|+++++||+|+.+....+++.+.++... .....+
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 150 (173)
T cd04154 83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHW 150 (173)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCce
Confidence 99999999999988999888888887665557899999999999987666777777775432 233457
Q ss_pred EEEEeccccCCChHHHHHHHhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+++++||++|.|++++|+++.+
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999999864
No 10
>KOG0092|consensus
Probab=100.00 E-value=5e-34 Score=196.62 Aligned_cols=157 Identities=20% Similarity=0.352 Sum_probs=141.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+|++++|..++|||||+-|+..+.|.. ..||+|... .++..++ .++.||||+|+++|+++-++||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 578899999999999999999999999986 588888764 4556666 78999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|||+++.+||...+.|+.++..+.. ++.-+.++|||+|+.+ .++.+|.....+..+ ..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~ 144 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF 144 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence 99999999999999999999976644 7777788999999977 788999999998766 889
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||+|.||+++|..|.+.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999999876
No 11
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.8e-33 Score=197.97 Aligned_cols=160 Identities=33% Similarity=0.571 Sum_probs=138.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|.+|||||||++++.+..+..+.||.+.....+++++..+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58899999999999999999988878889998888888888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....|+..++......+.|+++++||+|+.+....+++.+.++... ....+.+.+++|||++|.|+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHK-----------LCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcc-----------ccCCCcEEEEeCcCCCCCCH
Confidence 9999999999998765556789999999999987777788777764321 01123468999999999999
Q ss_pred HHHHHHHhhhc
Q psy2159 183 GNGFRWLANYI 193 (194)
Q Consensus 183 ~~l~~~l~~~i 193 (194)
+++|+||.+.+
T Consensus 150 ~~~f~~l~~~~ 160 (169)
T cd04158 150 YEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 12
>KOG0084|consensus
Probab=100.00 E-value=6.2e-34 Score=196.88 Aligned_cols=158 Identities=23% Similarity=0.372 Sum_probs=138.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+-+||+++|.+|+|||+|+.+|....|. .+..|+|++. .+++++| .++++|||+||++++.....+|+++++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 456789999999999999999999999998 6888988874 5667776 7899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|||+++.+||.++..|+.++..+ ...+.|.++|+||+|+.+ ..+.++.+....... ++
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~-----------------~~ 147 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG-----------------IP 147 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC-----------------Cc
Confidence 9999999999999999999999665 346689999999999977 566777777776644 55
Q ss_pred -EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 -LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 -~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++|||++.||++.|..|...+
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHH
Confidence 99999999999999999987654
No 13
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=1.8e-32 Score=194.70 Aligned_cols=161 Identities=32% Similarity=0.597 Sum_probs=139.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
....+|+++|++|+|||||++++....+..+.||.+.+...+..++..+.+||+||+.++...+..+++++|++++|+|+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 34689999999999999999999988888888999999888888999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++++++.....++..++.+....+.|+++++||+|+....+.+++.+.+.... .....+++++|||++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~SA~~ 160 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS------------IRDHTWHIQGCCALT 160 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEecccCC
Confidence 99988988888888887765556799999999999987666777777665322 223447899999999
Q ss_pred CCChHHHHHHHhh
Q psy2159 179 RQGFGNGFRWLAN 191 (194)
Q Consensus 179 ~~~v~~l~~~l~~ 191 (194)
|+|++++|++|.+
T Consensus 161 g~gi~e~~~~l~~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 14
>KOG0094|consensus
Probab=100.00 E-value=7.5e-33 Score=190.98 Aligned_cols=161 Identities=24% Similarity=0.314 Sum_probs=139.8
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+...+..|++++|..++||||||+++..+.|. .|.+|+|.+ .+++.+.+ +.+++|||+||++++.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 33446689999999999999999999999998 688899887 46677766 78999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|||+++..||.+...|+.+.+......+.-+++|+||.||.+ ....+|-.....+++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~----------------- 159 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN----------------- 159 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------
Confidence 9999999999999999999999999887666788889999999987 455556555555544
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..|+++||+.|.||.++|..|...+
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhc
Confidence 6899999999999999999987654
No 15
>KOG0070|consensus
Probab=100.00 E-value=3.9e-33 Score=191.60 Aligned_cols=177 Identities=33% Similarity=0.566 Sum_probs=163.5
Q ss_pred CccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
|+++++.+-. .-....+.+|+++|..++||||++.++..+++..+.||+|.+.+++++.+..+++||.+|+..++.
T Consensus 1 MG~~~s~~~~----~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~ 76 (181)
T KOG0070|consen 1 MGLIFSKLFS----GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRP 76 (181)
T ss_pred Ccchhhhhhh----hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCccccc
Confidence 5555554444 225688999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCc
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.|..|+++.+++|||+|++|.+.+.+.+..+..++.+....+.|+++.+||.|++.+.+..|+.+.+....
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~--------- 147 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHS--------- 147 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhc---------
Confidence 99999999999999999999999999999999999998888999999999999999999999999998877
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.|.+..|+|.+|+|+.|.++|+.+.+
T Consensus 148 ---l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 148 ---LRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred ---cCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 777899999999999999999999998876
No 16
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.6e-32 Score=195.66 Aligned_cols=156 Identities=18% Similarity=0.283 Sum_probs=132.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|+|||||+.++..+.+. .+.+|.+... ..+..++ ..+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999998876 4555665543 4456666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|||++++.+|+.+..|+.++..+. ++.|++||+||+|+.. ..+.++...+.+... +++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-----------------~~~ 144 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-----------------MTF 144 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999999999986543 6899999999999865 556777777765433 789
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||++|.||+++|+++.+.+
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.8e-32 Score=197.21 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=127.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.|+++|..|||||||++++..+.|. .+.+|.+... ..+.+++ ..+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999886 4667776543 4677776 78899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|+.+..|+..+.. ....+.|+++|+||+|+.. ....++..+..+.. ..+.|++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----------------~~~~~~et 143 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----------------TGMRFCEA 143 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCEEEEe
Confidence 99999999999988876543 3456799999999999864 34444444444221 12679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|+++.+.+
T Consensus 144 SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 18
>KOG0073|consensus
Probab=100.00 E-value=3.9e-32 Score=182.28 Aligned_cols=173 Identities=31% Similarity=0.558 Sum_probs=157.6
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
-+++.......++++|+++|..||||||+++++.+.......||.+.++.+..+++..+++||.+||...++.|.+|+..
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence 34555555667899999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
.|++|+|+|++++.++++....+..++......+.|+++++||.|++.+...+++...++... . +..
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~------------l~ks~ 151 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEE------------LAKSH 151 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHH------------hcccc
Confidence 999999999999999999999999999887788899999999999998899999987776644 4 667
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|+++.|||.+|+++.+-++|+.+.+
T Consensus 152 ~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 152 HWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred CceEEEEeccccccHHHHHHHHHHHH
Confidence 79999999999999999999998764
No 19
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=7.1e-32 Score=188.73 Aligned_cols=157 Identities=36% Similarity=0.652 Sum_probs=131.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|++++|||||++++....+..+.||.+.+...++..+..+.+||+||+.++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888877888988888888888899999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....++..+++.....++|+++++||+|+.+....+++...+.... .....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSE------------LKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccc------------cCCCcEEEEEeeccCCCCH
Confidence 7777777777776654456799999999999977555566655553221 2233468999999999999
Q ss_pred HHHHHHHhh
Q psy2159 183 GNGFRWLAN 191 (194)
Q Consensus 183 ~~l~~~l~~ 191 (194)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999976
No 20
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=8.1e-32 Score=188.93 Aligned_cols=158 Identities=33% Similarity=0.635 Sum_probs=131.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
+|+++|++|||||||++++.+..+ ..+.||.+.....+..++..+.+||+||+.++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 588999999999999999998753 367889888877777788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 101 RSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+.++.....++..++.... ..+.|+++++||+|+.+....+++...++... .....+.++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~Sa~~ 148 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLEN------------IKDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc------------ccCceEEEEEeeCCC
Confidence 9888888888888766432 25799999999999987656666666554321 123346799999999
Q ss_pred CCChHHHHHHHhhh
Q psy2159 179 RQGFGNGFRWLANY 192 (194)
Q Consensus 179 ~~~v~~l~~~l~~~ 192 (194)
|.|++++|+||.++
T Consensus 149 g~gv~~~~~~l~~~ 162 (162)
T cd04157 149 GEGLDEGVQWLQAQ 162 (162)
T ss_pred CCchHHHHHHHhcC
Confidence 99999999999764
No 21
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=7.5e-32 Score=191.11 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=128.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++|+++|.+|||||||++++..+.+. .+.||.+.... .+..++ ..+.+||+||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 469999999999999999999999887 57778876543 456666 67999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+|..+..|+..+......++.|+++|+||+|+.+ ..+.++..+..+.. .+++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-----------------~~~~~e~ 144 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-----------------NCPFFET 144 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-----------------CCEEEEE
Confidence 9999999999998776665544446799999999999865 34445554444332 2789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|++|.+.+
T Consensus 145 Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 145 SAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 22
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1.4e-31 Score=188.82 Aligned_cols=160 Identities=32% Similarity=0.507 Sum_probs=136.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
.|+++|++|||||||++++.+.....+.||.+.+...+..++..+.+||+||+.+++..+..+++++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47899999999999999999874447889999988888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC---
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR--- 179 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 179 (194)
++.....++..++......++|+++++||+|+....+..++.+.+..... .......+.+++|||++|
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCC
Confidence 99999999999987655568999999999999887777777777654320 001123478999999998
Q ss_pred ---CChHHHHHHHhh
Q psy2159 180 ---QGFGNGFRWLAN 191 (194)
Q Consensus 180 ---~~v~~l~~~l~~ 191 (194)
.|+++.|+||.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 899999999975
No 23
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=6.4e-32 Score=191.62 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=127.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+|++++|.+|+|||||+.++..+.|. .+.||++.... .+..++ .++.+|||+|+++++.++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 58999999999999999999999997 68888876543 345555 789999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC------------CCHHHHHhhhcccCccCCCccCccccc
Q psy2159 98 ASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA------------ASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++++||..+ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+...
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~------------- 146 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG------------- 146 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-------------
Confidence 9999999998 57888775543 57999999999998652 34455555543322
Q ss_pred CCcce-EEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPM-ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. .|++|||++|.||+++|+.+.+.+
T Consensus 147 ----~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 147 ----AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 4 699999999999999999998753
No 24
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=2.5e-31 Score=186.18 Aligned_cols=158 Identities=34% Similarity=0.590 Sum_probs=132.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC-EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+|+++|++|||||||++++.+..+..+.||.+.+...+..++ ..+.+||+||+..+...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 588999999999999999999988877888888777777654 7899999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..+++.....+.|+++++||+|+......+++...++... ......+++++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKK-----------YCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcc-----------cCCCCcEEEEecccccCCC
Confidence 88999988888887765556899999999999977666677766654211 0112346899999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999875
No 25
>KOG0071|consensus
Probab=100.00 E-value=2.7e-31 Score=173.88 Aligned_cols=165 Identities=32% Similarity=0.582 Sum_probs=157.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...++.+|+.+|..++||||++..+...+...+.||+|++.+++.+.+.++.+||.+|++..+..|++|+.+..++|||+
T Consensus 13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 13 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+.+.+..++.+..+..++.+....+.|++|.+||.|++.+.++.|+.+.++... ...+.|.+.++||
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~------------~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER------------IRDRNWYVQPSCA 160 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc------------ccCCccEeecccc
Confidence 9999999999999999999998889999999999999999999999999999877 7888899999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
.+|+|+.|-|.|+.+.+
T Consensus 161 ~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccchhHHHHHHHHHhhc
Confidence 99999999999998865
No 26
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.9e-31 Score=187.56 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=128.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++||+++|.+|||||||++++..+.+. .+.||.+... ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 468999999999999999999988775 4666766543 3555665 56789999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++..+|+....|+..+.......+.|+++++||+|+... ...++.....+... ++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-----------------CAFLET 143 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-----------------CEEEEe
Confidence 99999999999999999887655678999999999999652 23334333333222 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+++
T Consensus 144 Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 27
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=6.1e-31 Score=186.50 Aligned_cols=168 Identities=30% Similarity=0.575 Sum_probs=142.4
Q ss_pred HHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 13 LRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
++.....+..+++++|++|||||||++++.+..+..+.+|.+.+...+..++..+.+||+||+..+...+..+++.+|++
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 33334456899999999999999999999998887788888888888889999999999999998888888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|.++..++.....++..+++.....++|+++++||+|+......+++.+.++... ...+.++++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~------------~~~~~~~~~ 153 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD------------LRDRTWHIQ 153 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc------------cCCCeEEEE
Confidence 99999999888888888888887765556799999999999977666677776665433 344557789
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++||++|+|++++|+||.++
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred EeECCCCCCHHHHHHHHhcC
Confidence 99999999999999999864
No 28
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.7e-31 Score=190.48 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+..+||+++|.+|+|||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45679999999999999999999999886 5788887654 3445555 689999999999999999999999999999
Q ss_pred EEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|||++++.+|..+ ..|+..+... .++.|+++|+||+|+.+. ++.++..+..+...
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-------- 152 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG-------- 152 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------
Confidence 9999999999998 6777777554 267999999999998542 44445555443322
Q ss_pred cccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
..+|++|||++|.| |+++|+.+.+.
T Consensus 153 --------~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 --------AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred --------CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 13799999999998 99999998874
No 29
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=4.9e-31 Score=184.39 Aligned_cols=158 Identities=35% Similarity=0.635 Sum_probs=139.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|++|||||||++++.+..+..+.+|.+.+...+.+.+..+.+||+||+..+...+..+++.+|++++|+|++++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998778899999999889999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....++..+.......+.|+++++||+|+......+++.+.++... .....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCH
Confidence 9999999998887766567899999999999987666777777765532 2334578999999999999
Q ss_pred HHHHHHHhhh
Q psy2159 183 GNGFRWLANY 192 (194)
Q Consensus 183 ~~l~~~l~~~ 192 (194)
+++|++|.++
T Consensus 149 ~~~~~~l~~~ 158 (158)
T cd00878 149 DEGLDWLLQQ 158 (158)
T ss_pred HHHHHHHhhC
Confidence 9999999764
No 30
>KOG0078|consensus
Probab=99.98 E-value=1.3e-31 Score=187.77 Aligned_cols=158 Identities=23% Similarity=0.343 Sum_probs=139.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....++++++|.+|||||+++.++..+.|. .+..|+|.+. .++.+++ ..+++|||.||++++.+...|+++++++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 446789999999999999999999999987 6777777764 5777777 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|||++++.||+++..|+..+-++ ...+.|.++||||+|+.. .++.+..++....++ +.
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-----------------~~ 150 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-----------------IK 150 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhC-----------------Ce
Confidence 9999999999999999977777554 456899999999999876 677788888887766 99
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++||++|.||+++|-.|.+.+
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
No 31
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.98 E-value=3.9e-31 Score=185.61 Aligned_cols=155 Identities=19% Similarity=0.287 Sum_probs=126.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++....+. .+.||.+.. ...+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999988876 456666533 34466666 568899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.+++....|+..+.......+.|+++++||+|+.+ ....++.....+... .+++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 144 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-----------------CPFYETS 144 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-----------------CeEEEec
Confidence 999999999999988887765557899999999999865 223333333332211 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998865
No 32
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=4.8e-31 Score=186.00 Aligned_cols=160 Identities=37% Similarity=0.620 Sum_probs=134.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC-------CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT-------AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+|+++|++|||||||++++.+... ..+.+|.+.+...+.+++..+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 588999999999999999976432 2467788888888999999999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++++++.....++..+++.....+.|+++++||+|+......+++.+.++... .......++++++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~S 150 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA----------EEIGRRDCLVLPVS 150 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccc----------ccccCCceEEEEee
Confidence 99999888888888888887765557899999999999988777777777765532 01223457899999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|+|++++++||.++
T Consensus 151 a~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 151 ALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCcCHHHHHHHHhcC
Confidence 99999999999999763
No 33
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.98 E-value=4e-31 Score=193.30 Aligned_cols=167 Identities=21% Similarity=0.224 Sum_probs=131.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+||+++|.+|+|||||++++....+..+.+|++............+.+||++|++.+..++..+++++|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 48999999999999999999999998788888887766666778899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---------------------CCCHHHHHhhhcccCccCCCccCc
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---------------------~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+|..+..||..+... ...+.|+++|+||+|+.+ ....++...+.+...... ..
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~----~~ 155 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK----ML 155 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc----cc
Confidence 9999999999888754 346789999999999854 233445444443321000 00
Q ss_pred cccc-CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REIL-QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++. .....+|++|||++|.||+++|+++.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000 01125799999999999999999998754
No 34
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=1.8e-31 Score=192.18 Aligned_cols=169 Identities=18% Similarity=0.295 Sum_probs=124.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+||+++|.+|||||||+.++..+.+. .+.||.+.... .+..++ ..+.+|||+|+++++.++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3579999999999999999999999985 67888876543 344555 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
||++++.+|+.+.. |...+... .++.|+++|+||.|+.+... .+++.+ .........++...+. ....+++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~--~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAK--QIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHH--HcCCcEEEE
Confidence 99999999999975 55555432 35799999999999965321 111111 1000000000111111 112368999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|+++.+.+
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 35
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.98 E-value=6.2e-31 Score=185.06 Aligned_cols=156 Identities=30% Similarity=0.487 Sum_probs=131.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
.|+++|++|||||||++++.+..+. .+.||.+.....+..++..+.+||+||+++++..+..+++++|++++|+|.++.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 3789999999999999999988765 678898887777777889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc---
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK--- 178 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 178 (194)
.++.....|+..+.... +++|+++|+||+|+......+++.+.++... -.....+.+++|||++
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEP-----------IARGRRWILQGTSLDDDGS 147 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChh-----------hcCCCceEEEEeeecCCCC
Confidence 88999998888886543 6899999999999987766777666654322 0123457889988888
Q ss_pred ---CCChHHHHHHHhh
Q psy2159 179 ---RQGFGNGFRWLAN 191 (194)
Q Consensus 179 ---~~~v~~l~~~l~~ 191 (194)
++||+++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998875
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.98 E-value=4.6e-31 Score=188.33 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=130.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeC------------CEEEEEEEcCCCccchhhHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMG------------DIVFTTHDLGGHVQARRVWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~d~~g~~~~~~~~~~ 84 (194)
+.+||+++|++|||||||++++....+. .+.+|.+.+.. .+.+. ...+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4579999999999999999999998876 56777776543 33332 278999999999999999999
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++++|++++|+|++++++|..+..|+..+......++.|+++|+||+|+.+ ....++.....+...
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~----------- 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG----------- 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-----------
Confidence 9999999999999999999999999998887655556789999999999865 345556655554433
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 152 ------~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 152 ------IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998753
No 37
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=9.5e-31 Score=183.26 Aligned_cols=155 Identities=20% Similarity=0.320 Sum_probs=127.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.+..+. .+.||.+... ..+..++ ..+.+||++|++++..++..+++++|++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 58999999999999999999998875 5666666543 3455555 568899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
+++..++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++++||
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa 144 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-----------------IPYIETSA 144 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-----------------CeEEEecC
Confidence 999999999988888887765557899999999999865 334445555443322 67999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+++.+.+
T Consensus 145 ~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 145 KTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999875
No 38
>KOG0080|consensus
Probab=99.98 E-value=1.3e-31 Score=179.21 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=141.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccC-CCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPT-LHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t-~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+||+++|.+|+|||||+.++..+.|.+..|+ +|.+ .+.+..++ .++.+|||+||++++.+.+.||+++-++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34568999999999999999999999999876664 7775 45666666 7999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|+|++..++|..+..|+.++-.+...+++-.++|+||+|.. +.++.+|-.++..+.. .-
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~-----------------~L 150 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHR-----------------CL 150 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhC-----------------cE
Confidence 9999999999999999999999888888888899999999987 3678888888887766 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|++|||++.+||+-.|+.++++|
T Consensus 151 FiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEcchhhhccHHHHHHHHHHHH
Confidence 99999999999999999998865
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=4.3e-31 Score=186.23 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=124.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe--C--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM--G--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++....+. .+.+|.+.......+ + ...+.+||++|++.+...+..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 48999999999999999999988765 677888776654433 2 378999999999998888888899999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++++++..+..|+..+.... .+.|+++++||+|+.......+..+..+ .....++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----------------KKNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH-----------------HcCCEEEEEeC
Confidence 9999999999999988887654 3899999999999875332223222222 22377999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+|++++|++|.+++
T Consensus 142 ~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 142 KSNYNFEKPFLWLARKL 158 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 99999999999998765
No 40
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=1.3e-30 Score=186.49 Aligned_cols=163 Identities=31% Similarity=0.495 Sum_probs=132.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEe-----CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM-----GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++....+..+.||.+.+...... .+..+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999998887677888776655444 34789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+|++++.++.....++..+.......++|+++++||+|+......+++...+.... ......++++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 150 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHE-----------LSASTPWHVQPA 150 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccc-----------cCCCCceEEEEe
Confidence 999999888888888888777654456799999999999977666677666554211 011123678999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|+|+++++++|.+.+
T Consensus 151 SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 41
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=9.7e-31 Score=184.39 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=127.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++....+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999999998876 45567666543 345555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ..++.|+++|+||+|+.. ....++.....+... +++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 144 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-----------------LLFLEC 144 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999998887553 336789999999999865 344556666554322 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 145 Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 145 SAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 42
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=5.8e-31 Score=189.30 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.+||+++|.+|||||||++++....+. .+.||.+.... .+..++ ..+.+|||||++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 35689999999999999999999998876 56677766543 445555 578899999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++++|+.+..|+..+.......+.|+++++||+|+.+. ...++.....+... ++++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-----------------IPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-----------------CEEE
Confidence 9999999999999998888876655568999999999998653 34444444443322 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 43
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.7e-31 Score=186.71 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=123.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|+|||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++..+.+.+++++|++++|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 68999999999999999999999886 6778876654 2445555 689999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccCccc
Q psy2159 98 ASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++++||+.+ ..|+..+.... ++.|+++|+||+|+.++ +..++..+..+...
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~----------- 148 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG----------- 148 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC-----------
Confidence 9999999996 67777775543 67999999999998542 33444444443322
Q ss_pred ccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
...|++|||++|++ |+++|+.+.+.
T Consensus 149 -----~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 149 -----AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred -----CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 13799999999995 99999998873
No 44
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=3.2e-31 Score=188.36 Aligned_cols=164 Identities=19% Similarity=0.272 Sum_probs=123.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|.+|+|||||++++..+.+. .+.||.+.... .+..++ ..+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 58999999999999999999999885 68888877654 556666 688999999999999999889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC---ccCCCccCcccccCCcceEEEE
Q psy2159 98 ASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG---LTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+.. +..+.+.... ....++.... .....+.|++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~---~~~~~l~~~~~~~v~~~~~~~~a--~~~~~~~~~e 154 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDP---STIEKLAKNKQKPITPETGEKLA--RDLKAVKYVE 154 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhCh---hhHHHhhhccCCCcCHHHHHHHH--HHhCCcEEEE
Confidence 999999999975 55555433 2579999999999986531 1111221110 0000000011 1122378999
Q ss_pred eccccCCChHHHHHHHhhh
Q psy2159 174 CSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~ 192 (194)
|||++|.|++++|+.+.+.
T Consensus 155 ~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 155 CSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 9999999999999998864
No 45
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-30 Score=189.30 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=129.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||++++.+..+. .+.||.+.+. ..+..+ + ..+.+||+||++++..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 48999999999999999999998876 5677877653 345555 3 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 96 IDASDRSRFPESKYELDNLLAD---DALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|++++++|..+..|+..+... ....+.|+++|+||+|+. .....+++.+..+... ...
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~ 144 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----------------FIG 144 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----------------Cce
Confidence 9999999999999888776543 223678999999999997 4566667766664321 257
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.9e-30 Score=182.32 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++|+++|.+|+|||||++++..+++. .+.+|.+. ....+..++ ..+.+||+||++++..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 368999999999999999999998886 45555542 234566666 46889999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+|..+..|+..+.......++|+++|+||+|+.+ ....++........ ..+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 143 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEW-----------------GCPFMET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHh-----------------CCEEEEe
Confidence 9999999999999988887765557899999999999854 22333333332221 2579999
Q ss_pred ccccCCChHHHHHHHhhhcC
Q psy2159 175 SVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i~ 194 (194)
||++|.|++++|+++.+.++
T Consensus 144 Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQMN 163 (163)
T ss_pred cCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999998763
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.7e-30 Score=183.00 Aligned_cols=155 Identities=23% Similarity=0.378 Sum_probs=128.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+.++. .+.||.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 6777777654 3455554 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCC----CCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 97 DASDRSRFPESKYELDNLLADDAL----TDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+++++++.....|+..+...... .+.|+++|+||+|+.+ ....++......... .+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-----------------FK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-----------------Ce
Confidence 999999999999998888765432 5799999999999863 345555555543322 67
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 48
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.7e-30 Score=190.95 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=126.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+||+++|.+|||||||++++....|. .+.||++.... .+..++ ..+.+|||+|++++..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4679999999999999999999999887 67788876543 345555 7899999999999999999999999999999
Q ss_pred EECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------------CCCHHHHHhhhcccCccCCCccCc
Q psy2159 96 IDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 96 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~--------------~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
||++++.+|... ..|+..+.... ++.|+++|+||+|+.. .++.++..++.+...
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------- 160 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG--------- 160 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC---------
Confidence 999999999985 67777775532 5789999999999853 244455555554433
Q ss_pred ccccCCcce-EEEEeccccCC-ChHHHHHHHhhh
Q psy2159 161 REILQMRPM-ELFMCSVLKRQ-GFGNGFRWLANY 192 (194)
Q Consensus 161 ~~~~~~~~~-~~~~~Sa~~~~-~v~~l~~~l~~~ 192 (194)
. .|++|||++|+ ||+++|+.+...
T Consensus 161 --------~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 161 --------AEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred --------CCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 4 69999999998 899999998765
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=9.6e-31 Score=191.98 Aligned_cols=155 Identities=20% Similarity=0.305 Sum_probs=128.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEE--eC--CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELS--MG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~--~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|||||||++++..+.+. .+.+|.+.+..... .+ ...+.+||++|++++..++..+++++|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67789999999999999999999988886 67888887765443 33 379999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|||++++.+|..+..|+..+... .++.|+++|+||+|+... ...+++ ..... ..+.++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-----------------~~~~~~ 150 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-----------------KNLQYY 150 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHHHh-----------------cCCEEE
Confidence 999999999999999998888654 367999999999998652 233333 22221 226799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.|++++|++|.+.+
T Consensus 151 e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 151 EISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 50
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=1.8e-30 Score=184.28 Aligned_cols=168 Identities=16% Similarity=0.269 Sum_probs=121.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++|++++|.+|||||||+.++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 368999999999999999999998875 6777776543 2445555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+.. |+..+... .++.|+++|+||+|+.+.. ..+.+..... ......++....+ .....++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPITYPQGLAMAK--EIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC-CCCCHHHHHHHHH--HcCCcEEEEe
Confidence 9999999999975 55555443 3579999999999986421 1111111100 0000000001111 1122489999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|+|++++|+.+.+.+
T Consensus 156 Sa~~~~~i~~~f~~l~~~~ 174 (174)
T cd01871 156 SALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred cccccCCHHHHHHHHHHhC
Confidence 9999999999999998753
No 51
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=2.9e-30 Score=181.14 Aligned_cols=153 Identities=19% Similarity=0.326 Sum_probs=126.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++|+++|++|+|||||++++....+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 47999999999999999999998886 5678887654 4566666 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ...+.|+++|+||.|+.. ....++.....+... .++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 142 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-----------------MDFFET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999988877654 234789999999999865 234445444443322 578999
Q ss_pred ccccCCChHHHHHHHhhh
Q psy2159 175 SVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~ 192 (194)
||++|.|++++|++|.+.
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999875
No 52
>KOG0394|consensus
Probab=99.97 E-value=6.4e-31 Score=179.77 Aligned_cols=158 Identities=21% Similarity=0.323 Sum_probs=136.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|+|||||+|++...+|. ++..|+|... +.+..++ ..+++|||+||++++++...+|+++|+.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34579999999999999999999999998 7888988864 4555566 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+|+|++++.||+.+..|-.+++.+.. ...-|+||+|||+|+.. ..+......++. ..
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----------------s~ 150 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----------------SK 150 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----------------hc
Confidence 99999999999999999999998744 34479999999999855 355566677774 34
Q ss_pred cceEEEEeccccCCChHHHHHHHhhh
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++||++|||...||+++|+.+.+.
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHH
Confidence 46899999999999999999998764
No 53
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=4.5e-30 Score=181.18 Aligned_cols=156 Identities=23% Similarity=0.337 Sum_probs=129.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
...||+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3479999999999999999999998876 5677777654 3455565 578999999999999988899999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.+|..+..|+..+... ...+.|+++++||+|+.+ ....++.....+... .+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYG-----------------IKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999999988887654 346789999999999975 345555555554332 5799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999865
No 54
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=3e-30 Score=184.36 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=123.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+|++++|.+|+|||||++++..+.+. .+.||.+.+. ..+..++ ..+.+||++|++++..++..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 48999999999999999999998887 5888998765 4566776 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|++++.+|..+..|+..+.... ....| ++|+||+|+..+...+ .+.+..... .....+++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~-------------a~~~~~~~~e 145 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKY-------------AKAMKAPLIF 145 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHH-------------HHHcCCEEEE
Confidence 9999999999999988886642 23456 6889999986422111 111111110 0111267999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.|++++|+++.+.+
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 55
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=2.2e-30 Score=181.98 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=127.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.+||+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3579999999999999999999988765 4556655432 3444555 5789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++++||+|+... ...++..+..+... +++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-----------------IPYIE 143 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-----------------CcEEE
Confidence 999999999999999888876555568999999999998653 23344444443322 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 144 ~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 144 TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998765
No 56
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=4e-30 Score=181.94 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=125.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|.+|||||||++++....+. .+.||.+... ..+..++ ..+.+||+||++++..++..+++++|++++|+
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 37999999999999999999999886 6778887664 3455555 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+++++++.....|+..+.+.....+.|+++|+||+|+.+... .++........ ..+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-----------------QAEYW 143 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-----------------CCeEE
Confidence 9999999999999998887654444678999999999865322 22223333221 15789
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+.|.+.+
T Consensus 144 e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 144 SVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=4.1e-30 Score=180.72 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++.+..+. .+.+|.... ...+..++ ..+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999988876 455555433 23444554 678999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++++++.....|+..+.......+.|+++++||+|+.+. ...++.....+... .+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-----------------CPFLETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-----------------CEEEEee
Confidence 9999999999998888776655568999999999998652 33444444443322 6899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|++|.+++
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999999875
No 58
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=5e-30 Score=187.60 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=122.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|.+|||||||++++....++ .+.||++.++. .+..++ ..+.+||++|++.+..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 68999999999999999999998887 68888887653 455555 689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++|+.+..+|...+.. ..++.|+++|+||+|+..+... .++.+. .......+++...++..+ ..+|++|||
T Consensus 82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs~e~g~~~ak~~~--~~~y~E~SA 157 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVTHEQGTVLAKQVG--AVSYVECSS 157 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhc-cCCccCHHHHHHHHHHcC--CCEEEEcCC
Confidence 99999999996555544433 3468999999999998653210 010000 000000111111111121 248999999
Q ss_pred ccCCC-hHHHHHHHhhh
Q psy2159 177 LKRQG-FGNGFRWLANY 192 (194)
Q Consensus 177 ~~~~~-v~~l~~~l~~~ 192 (194)
+++++ |+++|+.+...
T Consensus 158 k~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 158 RSSERSVRDVFHVATVA 174 (222)
T ss_pred CcCCcCHHHHHHHHHHH
Confidence 99985 99999998763
No 59
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=5.8e-30 Score=180.29 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=126.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+.++. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 58999999999999999999999886 5677777544 3344444 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+... ...+.|+++++||+|+.+. ...++..+..+... ++++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-----------------FEFFEA 143 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999988887543 3357899999999998653 33445544444322 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 144 Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 144 SAKENINVKQVFERLVDII 162 (165)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 60
>KOG0079|consensus
Probab=99.97 E-value=5.2e-31 Score=174.10 Aligned_cols=153 Identities=21% Similarity=0.355 Sum_probs=136.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++.+++|.+|+|||+|+.++..+.|+ .|..|+|.+ +.+++++| ++++|||++|+++++.+...++++.+++++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 46789999999999999999999888 688888876 45777777 79999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++.+||.+...|+.++.+.. +..|-++|+||.|.++ ....++.+.+...++ +.+|++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-----------------ie~FET 149 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-----------------IELFET 149 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcC-----------------chheeh
Confidence 9999999999999999996654 6889999999999877 566777888887766 889999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++.+|++..|..|.+++
T Consensus 150 SaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQV 168 (198)
T ss_pred hhhhcccchHHHHHHHHHH
Confidence 9999999999999998763
No 61
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4.2e-30 Score=184.97 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=123.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
+|+++|.+|||||||++++..+.+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5889999999999999999988876 4666665443 3445555 4689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
++.++|..+..|+..+..... ..+.|+++|+||+|+.. ....++.....+... ++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 143 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-----------------CEFIEA 143 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEe
Confidence 999999999998888765432 36789999999999864 333444444333222 679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 144 SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 144 SAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 62
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=5.6e-30 Score=179.00 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=119.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
+||+++|++|||||||++++....+.. +.|+.+.....+.+++ ..+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 479999999999999999999888764 3444444445677777 6799999999975 3456789999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+++++|+.+..|+..+......++.|+++|+||+|+.. ..+.++..+..+. ...+.|++|
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~ 139 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD----------------MKRCSYYET 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH----------------hCCCcEEEE
Confidence 99999999999999988776557799999999999742 3344444333321 123789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|+.+.+.+
T Consensus 140 SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 140 CATYGLNVERVFQEAAQKI 158 (158)
T ss_pred ecCCCCCHHHHHHHHHhhC
Confidence 9999999999999998754
No 63
>KOG0098|consensus
Probab=99.97 E-value=2.3e-30 Score=177.39 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=137.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+|++++|..|+|||+|+.+++.+.|. .+..|+|... ..+.+++ .++++|||.|++.+++....+|+++-+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35679999999999999999999999987 5667888764 4555655 79999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++..++|..+..|+.++.++ ..++.-+++++||+|+.. +++.+|...+.++.+ ..|
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-----------------Lif 145 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-----------------LIF 145 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC-----------------cee
Confidence 999999999999999999999766 357889999999999865 888999999988766 778
Q ss_pred EEeccccCCChHHHHHHHhhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++||++++||+|+|......
T Consensus 146 mETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 146 METSAKTAENVEEAFINTAKE 166 (216)
T ss_pred ehhhhhhhhhHHHHHHHHHHH
Confidence 899999999999999876654
No 64
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=8.4e-30 Score=179.54 Aligned_cols=154 Identities=23% Similarity=0.348 Sum_probs=127.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 68999999999999999999998876 4566666543 4455555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ..++.|+++++||+|+.. ....++.....+... ++++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-----------------IPFLET 144 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 999999999999988887554 235789999999999865 344455555554333 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999998865
No 65
>KOG0077|consensus
Probab=99.97 E-value=9.1e-31 Score=176.07 Aligned_cols=193 Identities=62% Similarity=1.023 Sum_probs=176.3
Q ss_pred ccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 2 FEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+|.||+++++.+++++++.|++++|-.++|||||++.+.+++..+..||..|+.+...+++.+++.+|.+|+...++.
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
|..++..+|++++.+|+.+.+.|.+.+..+..++......+.|+++.+||+|.+...+.++++-.++........+....
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~ 160 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL 160 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999998888888766789999999999999998899999888877665555554445
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.....+...++.||...+.+--+.|.|+.+.++
T Consensus 161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 556777889999999999999999999887764
No 66
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=2.8e-30 Score=185.70 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=123.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++..+.+. .+.||.+.... .+..++ ..+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 37999999999999999999999887 46777766543 344454 689999999999999888889999999999999
Q ss_pred CCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++|..+. .|+..+... .++.|+++|+||+|+......++.....+.......++.... .....+.+++|||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA--KRINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEccC
Confidence 99999999886 466666543 357999999999999764333222221111100000000001 1112367999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+++.+.+
T Consensus 157 k~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 157 KLNRGVNEAFTEAARVA 173 (189)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999999999998753
No 67
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=1.3e-29 Score=179.17 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=129.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4579999999999999999999988876 4566766553 3455555 678999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|+++++++..+..|...++.... ..+.|+++++||+|+.. ....+++.+..+... ..+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~ 147 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG----------------DYP 147 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC----------------CCe
Confidence 9999999999999988887766432 35689999999999864 455666666664321 247
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|+.++|+++.+.+
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998764
No 68
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1e-29 Score=186.28 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=126.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||+++|.+..+. .+.||.+... ..+..+ ...+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 48999999999999999999998876 5677877653 445554 37899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
||++++++|..+..|+..+..... ..+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-----------------~~~ 143 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-----------------MES 143 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 999999999999988888766432 24568999999999864 344444454443322 678
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|+|++++|+++.+.+
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 69
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=2.3e-29 Score=175.32 Aligned_cols=157 Identities=30% Similarity=0.567 Sum_probs=132.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
.|+++|++|||||||++++.+.++. .+.||.+.+...+..++..+.+||+||+.++...+..++..+|++++|+|+++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3789999999999999999998876 678888888888888889999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..+.......++|+++++||+|+......+++........ .....++++++||++|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~g 148 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKS------------ITDREVSCYSISCKEKTN 148 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCccc------------ccCCceEEEEEEeccCCC
Confidence 88888888888887765557899999999999877555555544443221 223447899999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
+++++++|.+
T Consensus 149 i~~l~~~l~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred hHHHHHHHhh
Confidence 9999999975
No 70
>KOG0075|consensus
Probab=99.97 E-value=4.3e-30 Score=169.51 Aligned_cols=165 Identities=31% Similarity=0.558 Sum_probs=156.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+..++++.++|..+||||||+|.++.+.+. ...||.|.+...++-+...+.+||.||+++++++|..|++.+++++||
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4788999999999999999999999998776 799999999999999999999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++++.++..+..+.+++......++|+++.+||.|++.+....++...++... ...+.+-.+.+|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~s------------itdREvcC~siS 163 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSS------------ITDREVCCFSIS 163 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccc------------cccceEEEEEEE
Confidence 99999999999999999999998889999999999999999999999999998876 788889999999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
+++..|++-+.+||.++.
T Consensus 164 cke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 164 CKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EcCCccHHHHHHHHHHHh
Confidence 999999999999999864
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.3e-29 Score=178.42 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=121.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.++.+. .+.||.+.... .+..+. ..+.+||+||++++..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998875 45666665443 233333 679999999999999988888999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 98 ASDRSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+++++++..+..|+..+.... ..++.|+++|+||+|+.+ ....++........ ...+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----------------~~~~~e 144 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW-----------------NCAFME 144 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh-----------------CCcEEE
Confidence 999999999988877665432 236799999999999865 23333333333221 257999
Q ss_pred eccccCCChHHHHHHHhhh
Q psy2159 174 CSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~ 192 (194)
|||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999999864
No 72
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=1.7e-29 Score=183.06 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=128.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4679999999999999999999998876 5778877654 3455555 578999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++++|..+..|+..+... ....|+++|+||+|+.+. ...++......... +.++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 145 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-----------------ISLF 145 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999999998887554 367899999999998763 34455555544322 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 146 ETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
No 73
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2.3e-29 Score=181.24 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=126.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||++++....+. .+.+|.+.+.. .+.+++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 48999999999999999999998875 56677766543 355655 6899999999999999888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++.+++.++..|+..+... ...+.|+++++||+|+.. ....++......... .++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-----------------VPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-----------------CeEEE
Confidence 9999999999999988887654 335789999999999853 344455555544322 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 74
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=2.7e-29 Score=176.79 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=126.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+.+||+++|++|+|||||++++..+.+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999988776 345565543 45566666 578999999999999988999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++.....+.. ....++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----------------GMLAVL 144 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHc----------------CCcEEE
Confidence 99999999999999888888653 3467899999999998652 3344444444321 225689
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998754
No 75
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.8e-29 Score=184.24 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=126.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+||+++|++|||||||++++.+..+.. +.+|.+.+. ..+... + ..+.+||++|++++...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5799999999999999999999988763 556766543 334442 3 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++++|..+..|+..+.........|+++++||+|+.+ ....++.....+... ++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-----------------MKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-----------------CEEE
Confidence 999999999999999999887654445678899999999865 334445444443322 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 76
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=2.9e-29 Score=176.13 Aligned_cols=155 Identities=20% Similarity=0.342 Sum_probs=129.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++||+++|++|||||||++++.+..+.. +.+|.+.. ...+.+++ ..+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998874 67777654 34555555 6789999999999998888899999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++++.....|+..+..... ++.|+++++||+|+.. ....++.....+... +.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADENG-----------------LLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHHcC-----------------CEEEE
Confidence 999999999999999888876543 7799999999999874 345556655554422 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999876
No 77
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=1.6e-29 Score=177.25 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=125.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+||+++|.+|+|||||++++.+..+. .+.+|.+.+. ..+.++ ...+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 48999999999999999999998776 5666766654 334444 3789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+... ..+.|+++|+||+|+.. ....++.....+... ++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-----------------LPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEE
Confidence 99999999999998888877543 35799999999999865 344555555554433 5799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~~ 162 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEKC 162 (162)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998753
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=3.3e-29 Score=176.29 Aligned_cols=155 Identities=19% Similarity=0.293 Sum_probs=127.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+|+++|++|||||||++++.+.++. .+.||.+.+. ..+..++ ..+.+||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 368999999999999999999998876 5667776543 4455566 5789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++........ .+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN-----------------GLSFIE 144 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHc-----------------CCEEEE
Confidence 99999999999998888876543 34689999999999865 33445555555332 267999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 145 ~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 145 TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
No 79
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=3.2e-29 Score=175.67 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=126.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 48999999999999999999998875 4555655443 3445555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+... ..++.|+++++||.|+.+ ....++......... +.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-----------------LLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999888876543 347899999999999865 344556655554322 789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998864
No 80
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=1.1e-29 Score=183.39 Aligned_cols=147 Identities=19% Similarity=0.324 Sum_probs=120.5
Q ss_pred EcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 27 LGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 27 ~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+|.+|||||||++++..+.+. .+.+|++.+... +..++ ..+.+||++|++++..++..+++++|++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999988886 578888776543 34443 7999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (194)
.+|..+..|+..+.... .+.|+++|+||+|+... ...++ ....+ ...+.|++|||++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~-~~~~~-----------------~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKS-ITFHR-----------------KKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHH-HHHHH-----------------HcCCEEEEEeCCCCC
Confidence 99999999888887643 57999999999998642 22222 22222 123789999999999
Q ss_pred ChHHHHHHHhhhc
Q psy2159 181 GFGNGFRWLANYI 193 (194)
Q Consensus 181 ~v~~l~~~l~~~i 193 (194)
||+++|++|.+.+
T Consensus 141 ~v~~~F~~l~~~i 153 (200)
T smart00176 141 NFEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=4.1e-29 Score=176.78 Aligned_cols=156 Identities=22% Similarity=0.307 Sum_probs=126.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccch-hhHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d~ii~ 94 (194)
..+|+++|++|||||||++++....+. .+.+|.+... ..+..++ ..+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 469999999999999999999998876 4666766543 3455555 689999999999886 467888899999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+.......+.|+++|+||+|+... ...++.....+.. .++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH-----------------SMPLF 144 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc-----------------CCcEE
Confidence 9999999999999998888877655578999999999998652 2333443343321 26799
Q ss_pred Eecccc---CCChHHHHHHHhhhc
Q psy2159 173 MCSVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~---~~~v~~l~~~l~~~i 193 (194)
+|||++ +.+++++|..+.+.+
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999 999999999999876
No 82
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=4.7e-29 Score=175.01 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|.+|||||||++++....+. ...+|.+.+.. .+..++ ..+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 48999999999999999999988876 34455554432 334444 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....|+..+.+. .++.|+++++||+|+.+.. .++.....+. ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~-----------------~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNFAEK-----------------HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHHHHH-----------------cCCeEEEEeC
Confidence 999999999998888887543 3578999999999985421 2222222211 1267999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+.+.+.+
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
No 83
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=4e-29 Score=175.34 Aligned_cols=153 Identities=26% Similarity=0.409 Sum_probs=132.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
||+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999877 5777876654 4555555 679999999999999988999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++++||..+..|+..+..... .+.|+++++||.|+.+ ..+.++..+...... .+|++||
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~S 142 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-----------------VPYFEVS 142 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-----------------SEEEEEB
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhC-----------------CEEEEEE
Confidence 9999999999999888876543 5689999999999876 677778777776544 8899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|+++.||.++|..+++.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999875
No 84
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=4.2e-29 Score=179.32 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=121.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|+|||||++++.+..+. .+.+|.+... ..+..+ + ..+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999886 5666666553 334444 3 68999999999999999998999999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCC------CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++++|+.+.. |+..+... .++.|+++|+||.|+.+. ...++..+...... ..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----------------~~ 142 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----------------AF 142 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----------------Cc
Confidence 9999999999875 55555432 367899999999998653 23445444443322 12
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
No 85
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=8.6e-29 Score=174.82 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|++|||||||++++.+.++. .+.+|.+.+ ...+..++ ..+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998875 344555554 34455555 6899999999999999888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++++..+..|+.++.... .++.|+++|+||.|+.+ ....++......... +.+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e 145 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-----------------LIFME 145 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEE
Confidence 99999999999999888886542 36799999999999874 345556655554333 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++++|++++|+++.+++
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1e-28 Score=183.74 Aligned_cols=155 Identities=22% Similarity=0.278 Sum_probs=128.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.+|+++|.+|||||||++++..+.+. .+.||.+. ....+.+++ +.+.+||++|++.+..++..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 47999999999999999999988887 56777763 344566666 678899999999998888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhC--------CCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 98 ASDRSRFPESKYELDNLLAD--------DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++.++|+.+..|+..+... ....+.|+++|+||+|+.. ....+++.+.+.. ..
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----------------~~ 144 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----------------DE 144 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----------------cC
Confidence 99999999999888888653 1335799999999999864 4566676666532 12
Q ss_pred ceEEEEeccccCCChHHHHHHHhhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+.++++||++|.|++++|++|.+.
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999874
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.1e-28 Score=172.93 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=124.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|++|||||||++++.+..+. .+.++.+.+ ...+..++ ..+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999998876 445555544 34555665 57999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+ ....++.....+... ..++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-----------------AMFIET 142 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEE
Confidence 9999999999999988876543 23699999999999944 234444444443322 779999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998764
No 88
>KOG0093|consensus
Probab=99.97 E-value=1.4e-29 Score=167.15 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=134.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.-+|++++|.+.+|||||+.++.+..|. .+..|+|...+ ++-.+. .++++|||.|+++++.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4459999999999999999999999987 57778887643 332222 799999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+++++||..+..|...+... .-.+.|+|+++||||+.+ .++.+......+.++ ..||
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG-----------------fefF 161 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLG-----------------FEFF 161 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhC-----------------hHHh
Confidence 99999999999999998888543 557899999999999866 466777777777766 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||.+.||+.+|+.++..|
T Consensus 162 EtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDII 182 (193)
T ss_pred hhcccccccHHHHHHHHHHHH
Confidence 999999999999999998765
No 89
>KOG0087|consensus
Probab=99.97 E-value=1.4e-29 Score=176.99 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=139.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+|++++|.+++|||-|+.++..++|. +.-+|+|.... .+..++ .+.++|||+||++|++....+|+++.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 346789999999999999999999999998 67778888654 455555 7999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++...+|+++..|+.+++.+. .+++++++|+||+||.. .++.++.+...+... ..
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~-----------------l~ 152 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-----------------LF 152 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcC-----------------ce
Confidence 99999999999999999999998764 36899999999999976 677888888887766 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++||.++.||+++|+.++..|
T Consensus 153 f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EEEecccccccHHHHHHHHHHHH
Confidence 99999999999999999887654
No 90
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=1.5e-28 Score=172.23 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=128.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+|++++|++|||||||++++.+..+. ...+|.+.+.. .+.+++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 48999999999999999999998876 46677766543 344554 68999999999999888888999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
|++++.++.....|+..+.......+.|+++++||+|+.. ....++..+...... .+++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN-----------------MLFIETS 143 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC-----------------CEEEEEe
Confidence 9999999999999888887766667899999999999974 445556555554322 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++++++.+.+
T Consensus 144 a~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 144 AKTRDGVQQAFEELVEKI 161 (161)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
No 91
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1e-28 Score=177.46 Aligned_cols=154 Identities=18% Similarity=0.310 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+.. +.+|.+... ..+..++ ..+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 489999999999999999999998874 777877654 3455555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+.... ..+.|+++++||.|+.+. ...++.....+... ++++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ev 142 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN-----------------IPFFET 142 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999999999999888876542 345899999999998752 34444444443222 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 143 SAKQSINVEEAFILLVKLI 161 (188)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
No 92
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=1.3e-28 Score=180.02 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=128.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....+||+++|++|||||||++++....+..+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567899999999999999999999988877778877654 3455555 57899999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+|++++++|..+..+|...+.. ....+.|+++|+||+|+... ...++......... ..
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~ 153 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-----------------CL 153 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CE
Confidence 999999999999998766554443 33356899999999998652 33344444443222 67
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 93
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.2e-28 Score=180.65 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=128.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+||+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4579999999999999999999998876 5667777654 4566665 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.+|+.+..|+..+... ...+.|+++++||+|+.+ ....++........ .++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-----------------~~~~~ 152 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-----------------GLSFL 152 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-----------------CCEEE
Confidence 99999999999999888877554 335799999999999855 23344444443322 27899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 94
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=3.8e-29 Score=177.46 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 48999999999999999999998876 4666665433 3455565 467899999999999888889999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
++++.+|......|...+... .++.|+++++||+|+.++....+.............++..... ......+++|||+
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~ 157 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK--EIGAHCYVECSAL 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEecCC
Confidence 999999999875444443332 5789999999999986532222111111111100001111111 1122469999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.|++++|+.+.+.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998764
No 95
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.5e-28 Score=177.32 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=123.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|+|||||++++..+.+. .+.+|.+... ..+..++ ..+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999998885 3777877654 3566666 5678999999999998888889999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC------CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|++++.+++.+..|+..+... .++.|+++|+||+|+.+. ...+++.+..... ..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-----------------~~ 141 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-----------------KA 141 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-----------------CC
Confidence 9999999999988888877553 257899999999998542 1223333333221 26
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+++.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
No 96
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=7e-29 Score=176.08 Aligned_cols=152 Identities=17% Similarity=0.291 Sum_probs=117.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
|+++|++|||||||++++.+..+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 578999999999999999998886 4556654443 3455555 46999999999999998888999999999999999
Q ss_pred CCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccCccccc
Q psy2159 100 DRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++|+.+.. |+..+... .++.|+++|+||+|+.... ..++.....+.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------- 143 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR--------------- 143 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH---------------
Confidence 9999999875 66655443 3689999999999986521 11222222211
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++|||++|.|++++|+.+.+.+
T Consensus 144 -~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 -IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred -cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 1224799999999999999999998753
No 97
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=1.6e-28 Score=172.48 Aligned_cols=154 Identities=23% Similarity=0.337 Sum_probs=126.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988775 4556655543 4566666 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+++.+..|+..+.... .++.|+++++||+|+.. ....++..+..+... ++++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG-----------------LPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999999999888887776553 25899999999999865 334555555554322 679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++++++.+++
T Consensus 143 Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998865
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.9e-28 Score=173.00 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=125.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+++|+++|++|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 468999999999999999999988875 4566665443 3445555 68899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|.++++++.....|...+.......+.|+++++||.|+... ...++.....+. ....+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 144 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----------------WGNVPFYET 144 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----------------cCCceEEEe
Confidence 99999999999988887766555568999999999998652 333333333221 122679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++..++
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 99
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=2.1e-28 Score=171.81 Aligned_cols=155 Identities=20% Similarity=0.308 Sum_probs=127.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++....+. .+.++.+.... ....++ ..+.+||+||+.++...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999988876 45555554433 334443 679999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.++.....|+..+.......++|+++|+||+|+.. ....++......... .+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG-----------------VPYVETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEee
Confidence 999999999999999998765567899999999999876 234444444443322 5799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+++
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
No 100
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.1e-28 Score=172.02 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=120.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCCccee--EEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLHPTSE--ELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+||+++|++|||||||++++... .+. .+.+|.+++.. .+..+ ...+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 444 56777776542 33332 379999999999999998899999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+. ....+........ ..++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 141 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN-----------------QLKF 141 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHc-----------------CCeE
Confidence 9999999999998888888776543 56899999999998653 2332332322221 1579
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+.+.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
No 101
>KOG0086|consensus
Probab=99.96 E-value=9.1e-29 Score=164.45 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=133.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..-+|++++|+.|+|||+|++++..+++. +..+|+|... ..++.++ +++++|||.||+++++..+.+|+++.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34579999999999999999999999987 6888888764 4566665 79999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++..++|+.+..|+.+.... ..+++-+++++||.|+.+ ++...|...+.++-. ..+
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-----------------l~f 148 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LMF 148 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-----------------eee
Confidence 999999999999999999998654 457788899999999976 566667776665433 689
Q ss_pred EEeccccCCChHHHHHHHhhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.++||++|+||+|.|-...+.
T Consensus 149 lETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCART 169 (214)
T ss_pred eeecccccccHHHHHHHHHHH
Confidence 999999999999999765543
No 102
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=4.6e-28 Score=176.84 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=128.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+||+++|++|||||||++++....+. .+.+|++.+. ..+.+++ ..+.+||++|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999998776 4566776653 3456655 578899999999999989999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+... ..++.|+++++||+|+.. ....++..+..+... ++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----------------LIFM 146 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999998888876544 235799999999999865 345566666664433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||+++.|++++|+++.+.+
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
No 103
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=3.6e-28 Score=175.67 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchh--------hHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARR--------VWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~--------~~~~~~~~ 88 (194)
.+|+++|.+|||||||++++.+..+. .+.||.+... ..+..++ ..+.+|||||..++.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 48999999999999999999998886 4677766443 3556666 6788999999764321 13345788
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccccc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+|++++|||++++++|+.+..|+..+.... ...+.|+++|+||+|+... ...++.......
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~--------------- 145 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK--------------- 145 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH---------------
Confidence 999999999999999999998888887653 2467999999999999652 233333333221
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+|++|||++|.|++++|+.+.+.+
T Consensus 146 -~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 146 -SWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred -hcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 1136799999999999999999998753
No 104
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=2.9e-28 Score=171.55 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=118.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ii~v~d 97 (194)
+|+++|++|||||||++++....+. .+.+|.... ...+..++ ..+.+||+||+.. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999987775 455555332 33445555 5789999999985 34456778899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 98 ASDRSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.+ ....++..+..+... .+++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 143 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-----------------CLFFEV 143 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-----------------CEEEEe
Confidence 9999999999888777665432 45799999999999854 334445555543322 679999
Q ss_pred ccccC-CChHHHHHHHhhhc
Q psy2159 175 SVLKR-QGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~-~~v~~l~~~l~~~i 193 (194)
||++| .|++++|+++.+.+
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCCchhHHHHHHHHHHHH
Confidence 99999 59999999998765
No 105
>KOG0091|consensus
Probab=99.96 E-value=1.2e-28 Score=165.51 Aligned_cols=160 Identities=19% Similarity=0.316 Sum_probs=137.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEe--C-CEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSM--G-DIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~--~-~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
++..+++++++|.+-+|||+|++.++.++++ -..||+|.+. .-+++ + ..++++|||+||+++++....+|+++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 4567889999999999999999999999998 4678888763 12232 2 279999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++++|+|+++.+||+.+..|+.+....-..|.+++ .+|++|+|+.. .+..+|........+
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------------- 147 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------------- 147 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC----------------
Confidence 99999999999999999999999877766677777 58899999865 677888888877666
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|+++||++|.||++.|+-+.+.+
T Consensus 148 -M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 -MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred -ceEEEecccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 106
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=4.9e-28 Score=177.89 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchhhHhhhhh-cCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFP-AVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~-~~d~ii~ 94 (194)
+||+++|++|+|||||++++..+.+. .+.+|.+ .....+..++ ..+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999887774 5556664 3344556544 689999999998 223344556 8999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++.+|.....|+..+.......+.|+++|+||+|+.+. ...++........ ..+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~-----------------~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF-----------------DCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc-----------------CCeEE
Confidence 9999999999999998888876554568999999999998652 3344443333221 25799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.||+++|+++.+++
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999875
No 107
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=8.3e-28 Score=170.11 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=124.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. ...+|.+.+. ..+..++ ..+.+||+||++.+...+..+++++|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 48999999999999999999998775 4455655443 4455665 56789999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
|++++.++.....|...++.... ..+.|+++++||+|+.. ....+++....+.. ...++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 144 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----------------GNIPY 144 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----------------CCceE
Confidence 99999888888877776655432 34799999999999973 44556655555331 13679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+++.+.+
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 108
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.3e-28 Score=174.28 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCeEEEEcCCCCChHHHHH-HHHcCCC------CccccCCCc-c-ee-E--------EEeCC--EEEEEEEcCCCccchh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQ-MLKNDRT------AQHMPTLHP-T-SE-E--------LSMGD--IVFTTHDLGGHVQARR 80 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~-~~~~~~~------~~~~~t~~~-~-~~-~--------~~~~~--~~~~~~d~~g~~~~~~ 80 (194)
.+||+++|.+|||||||+. ++.+..+ ..+.||++. . .. . +..++ ..+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999995 6655433 246677753 2 11 1 13344 7899999999975 3
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCC---------------------CC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFD---------------------AA 138 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~---------------------~~ 138 (194)
....+++++|++++|||++++.+|..+.. |+..+... .++.|+++|+||+|+.+ ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45667899999999999999999999974 66666443 25789999999999853 23
Q ss_pred CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+.++..+..+... .+|++|||++|.||+++|+.+.++
T Consensus 158 ~~~e~~~~a~~~~-----------------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELG-----------------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhC-----------------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 4445555544333 689999999999999999999875
No 109
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=1.3e-27 Score=167.38 Aligned_cols=154 Identities=23% Similarity=0.351 Sum_probs=122.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|++|+|||||++++.+..+. ...+|.... ...+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 48999999999999999999998775 344444343 23444444 57999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++.....|+..+..... .+.|+++++||+|+.. ....+++.+...... ..++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-----------------AKHFET 142 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 99999999998888877755432 3789999999999875 234455555544322 678999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++++|++++++++.+.+
T Consensus 143 s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 110
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=3.6e-28 Score=172.56 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=119.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++.+..+. .+.||.+... ..+.+++ ..+.+||++|++++...+..++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999998886 5777776653 4556655 578999999999988888788899999999999
Q ss_pred CCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++.++|..+.. |...+... ..+.|+++++||+|+.+.... +++. ...........+..... ......+++||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~-~~~~~~v~~~~~~~~~~--~~~~~~~~~~S 156 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELA-KMKQEPVKPEEGRDMAN--KIGAFGYMECS 156 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhh-hccCCCccHHHHHHHHH--HcCCcEEEEec
Confidence 999999988865 44444332 357899999999998653211 1111 00000000000000011 11235799999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|.|++++|++|.+.
T Consensus 157 a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 157 AKTKEGVREVFEMATRA 173 (175)
T ss_pred cccCcCHHHHHHHHHHH
Confidence 99999999999999875
No 111
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=6.6e-28 Score=170.45 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=121.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
++.+||+++|.+|||||||++++.++.+. .+.||.+... ..+..++ ..+.+||++|++.+...+..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46679999999999999999999999885 5778887654 4566666 6789999999999988888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.. ..+.|+++|+||+|+.+... ..+..+..+... . ..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------~--~~ 142 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG--------------L--PP 142 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcC--------------C--CC
Confidence 999999999888888777765522 24789999999999865321 112222221111 1 23
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHh
Confidence 68999999999999999998754
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.4e-28 Score=170.42 Aligned_cols=156 Identities=17% Similarity=0.268 Sum_probs=114.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.|++++|.+|||||||++++..+.+....++..... ....+ .+..+.+||+||+.++...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 389999999999999999999988864434322222 22233 347899999999998888777888999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+++.++..+..+|...+.... .+.|+++|+||+|+.+.... +++....+.. .....+++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~e~ 144 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---------------REIETCVEC 144 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH---------------hcccEEEEe
Confidence 999999998654444443322 47999999999999764332 1222111110 011369999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+.+.+.+
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999999998764
No 113
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.2e-27 Score=166.64 Aligned_cols=152 Identities=22% Similarity=0.344 Sum_probs=126.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcceeEEE--eC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSEELS--MG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~~~~--~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+.. +.+|.+.+..... .+ ...+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999999998874 4677777655433 32 378999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+.... ..+.|+++++||+|+. .....+++.+...... .+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENG-----------------LLFFET 142 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999888999888887776542 2579999999999995 4556667766665433 789999
Q ss_pred ccccCCChHHHHHHHhh
Q psy2159 175 SVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~ 191 (194)
||+++.|++++|++|.+
T Consensus 143 sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 143 SAKTGENVEELFQSLAE 159 (159)
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 99999999999999864
No 114
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=1.5e-27 Score=169.18 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=115.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+|++++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 48999999999999999999988776 4555543222 3455555 678999999999999988889999999999999
Q ss_pred CCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccCccc
Q psy2159 98 ASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++++++|+... .|+..+... .++.|+++++||+|+.+.. ..++...+.+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~------------- 145 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK------------- 145 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH-------------
Confidence 99999999886 466555432 3578999999999986421 12222222211
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
.....+++|||++|.|++++|+.+.
T Consensus 146 ---~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 146 ---IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred ---hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1224799999999999999999875
No 115
>KOG0072|consensus
Probab=99.96 E-value=1.4e-28 Score=161.88 Aligned_cols=173 Identities=29% Similarity=0.513 Sum_probs=157.1
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
.+++..+-...++.+++++|..|+||||++.++--.+...+.||++.+.+++.+.+.++++||..|+...+..|+.++.+
T Consensus 6 ~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~d 85 (182)
T KOG0072|consen 6 SSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYAD 85 (182)
T ss_pred HHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcc
Confidence 34444444555999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
.|++|||+|.+|..........+..++......+..+++++||+|..-+....|....++... .+.+.
T Consensus 86 t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~------------Lk~r~ 153 (182)
T KOG0072|consen 86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQK------------LKDRI 153 (182)
T ss_pred cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHH------------Hhhhe
Confidence 999999999999998888888888888888888888999999999988889999988888766 77888
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|.+|.+||.+|+|+++.++|+.+.+
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999876
No 116
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.5e-27 Score=171.61 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=123.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
||+++|.+|||||||++++....+.. +.+|... ....+.+++ ..+.+||+||+..+..++..++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988763 4455432 334566666 6899999999999998888899999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++.+++....|+..+.......+.|+++++||+|+.+. ...++..+.... .....++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~S 144 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----------------DWNCGFVETS 144 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----------------hcCCcEEEec
Confidence 999999999998888877655568999999999998652 222222222210 1125689999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+++
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998864
No 117
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=2.7e-27 Score=168.88 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=126.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|+|||||++++....+. .+.||.+.. ...+..++ ..+.+||+||+.++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988876 355665543 44556655 567999999999999888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
.++..+++....++..++......+.|+++++||+|+.. ....++.....+... .+++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 144 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-----------------AAFLESS 144 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-----------------CeEEEEe
Confidence 999999999999999988866557889999999999864 233334443333222 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|+++.|+.++|+++.+.+
T Consensus 145 a~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 145 ARENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
No 118
>KOG0074|consensus
Probab=99.96 E-value=8.2e-28 Score=157.81 Aligned_cols=165 Identities=33% Similarity=0.590 Sum_probs=154.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC-EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
...++++|+++|-.++|||||++.+.+.......||.|++...+.+.+ ..+++||.+|+...+..|..||.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 346899999999999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|++|+..|+++...+.++++.......|+.|..||.|+....+.+++...++... ...+.|.+.+||
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~cs 160 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECS 160 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCc
Confidence 99999999999999999999988888999999999999999889999999988877 788899999999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|.+++|+..-.+|+....
T Consensus 161 als~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccccCccCcchhhhcCC
Confidence 999999999999987653
No 119
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=3.4e-27 Score=164.91 Aligned_cols=154 Identities=20% Similarity=0.311 Sum_probs=124.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
||+++|++|||||||++++.+..+. .+.++.+. ....+..++ ..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999987765 44554442 233455553 6789999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++.....++..+.........|+++++||+|+.+ ....+++........ .+++++||
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S~ 143 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-----------------CPFIETSA 143 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-----------------CcEEEecc
Confidence 99999999999998887765546899999999999875 234455555554322 67999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
+++.|++++|++|.+.+
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998764
No 120
>KOG0081|consensus
Probab=99.95 E-value=4.7e-29 Score=166.84 Aligned_cols=156 Identities=22% Similarity=0.299 Sum_probs=136.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-------C----EEEEEEEcCCCccchhhHhhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-------D----IVFTTHDLGGHVQARRVWRDYF 86 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-------~----~~~~~~d~~g~~~~~~~~~~~~ 86 (194)
-++++.+|.+|+||||++.++.+++|. +...|+|.+. +.+-++ | ..+++|||+||++++++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 357788999999999999999999987 6777777753 333332 1 5799999999999999999999
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++-+++++||++++.||-+++.|+.++..+....+.-+++++||+|+.+ .++.++.....++++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg------------- 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG------------- 155 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC-------------
Confidence 99999999999999999999999999999998889999999999999976 567777888888877
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|||++||-+|.||++..+.++..+
T Consensus 156 ----lPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 156 ----LPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred ----CCeeeeccccCcCHHHHHHHHHHHH
Confidence 8999999999999999999887643
No 121
>KOG0095|consensus
Probab=99.95 E-value=8.5e-28 Score=159.27 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=126.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
--+||+++|..|+|||+|++++..+-|+ -...|+|.+ +++++.++ .++++|||.|++++++....+++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 4579999999999999999999998887 466677665 57788877 789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++...+|+-+.+|+.++-++. ..+..-|+|+||.|+.+. ..++++-+.+. ....+.|.+
T Consensus 86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs----------------~~qdmyfle 148 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFS----------------EAQDMYFLE 148 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHH----------------Hhhhhhhhh
Confidence 999999999999999999997663 244556899999998663 22223333222 223367999
Q ss_pred eccccCCChHHHHHHHhh
Q psy2159 174 CSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~ 191 (194)
+||++..||+.+|..+.-
T Consensus 149 tsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hcccchhhHHHHHHHHHH
Confidence 999999999999988753
No 122
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=6.9e-27 Score=165.23 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=115.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.+..+. .+.+|..... ..+..++ ..+.+||+||++++......+++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 4455544322 3334443 679999999999888888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-------------HHHHHhhhcccCccCCCccCccccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-------------EDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-------------~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++.++......|...+... ..+.|+++|+||+|+.+... .++..+....
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------- 144 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE--------------- 144 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH---------------
Confidence 999888888776544444332 24899999999999876432 2222322222
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.+...++++||++|+|++++|++|.+
T Consensus 145 -~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 -IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 12248999999999999999999876
No 123
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=2e-26 Score=162.64 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+..+++++|++|||||||++++....+. .+.+|.+.. ...+...+ ..+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34579999999999999999999977665 455555533 34456666 56889999999999988888999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.++.....|+..+... ...+.|+++++||+|+.+... ..+..+.+.. ...+.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----------------~~~~~~~ 147 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----------------AQDMYYL 147 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----------------HcCCeEE
Confidence 999999988898888887766443 234689999999999865221 1232233321 1126799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.|++++|++|.+.+
T Consensus 148 ~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
No 124
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=3.4e-26 Score=161.32 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=108.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc----h-----hhHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA----R-----RVWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~----~-----~~~~~~~~~~d 90 (194)
+|+++|++|+|||||++++.+..+. ...+|.+.....+..++..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 7899999999999999999998764 2234566666677777899999999998421 0 11111123468
Q ss_pred EEEEEEECCCCCCh--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRF--PESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|+++..++ .....|+..+... ..+.|+++|+||+|+.......+..+.. ....
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----------------~~~~ 142 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----------------ELEG 142 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----------------hhcc
Confidence 99999999987654 4445566655432 2479999999999997643333322222 1234
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++|||++|.|++++|+++.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHHh
Confidence 7899999999999999999998765
No 125
>KOG0088|consensus
Probab=99.95 E-value=5.8e-28 Score=161.50 Aligned_cols=157 Identities=21% Similarity=0.307 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc--ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP--TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.-.+|++++|..-+|||||+-++..++|. +...|... ...++...+ ..+.||||.||++++++-+-||+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 45689999999999999999999999986 44444332 234555554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++|..||+.++.|..++... ....+.++||+||+|+.+ .+..+|...+.+..+ ..+
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-----------------A~y 152 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-----------------ALY 152 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-----------------hhh
Confidence 999999999999999999999764 345688899999999866 566777777777655 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||+++.||.++|+.+.+.+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKM 174 (218)
T ss_pred eecccccccCHHHHHHHHHHHH
Confidence 9999999999999999987653
No 126
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=3.7e-26 Score=167.49 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=126.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe----CCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM----GDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+|++++|++|||||||++++..+.+. .+.+|.+.......+ +...+.+||++|++++...+..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 456789999999999999999887777665 678888887655443 337899999999999988888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+.....+. ..+.++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYY 146 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999998888876542 57899999999998653222232233322 226799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|.+|.+.+
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 127
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.94 E-value=5.7e-26 Score=163.05 Aligned_cols=155 Identities=16% Similarity=0.249 Sum_probs=115.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.|++++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||++|++.+.......++.+|++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 358999999999999999999977765 4555554443 3445555 56899999999988777667788999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHhhhcccCccCCCccCcccc
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
|+++.++|..+.. |+..+... .++.|+++|+||+|+.++. ..++.....+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 144 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE-------------- 144 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH--------------
Confidence 9999999999875 55555433 2579999999999985421 11222222211
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++|||++|.|++++|+++.+.+
T Consensus 145 --~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 --IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred --hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1124799999999999999999998653
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=9.4e-26 Score=159.33 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=113.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCcc----chhhHhh---hhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQ----ARRVWRD---YFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~~~~~~~---~~~~~d~ 91 (194)
+|+++|.+|||||||++++.+.... ...+|..++.+.+.+++. .+.+|||||+.+ ....... .+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976542 234466667777777776 999999999742 1122222 2456999
Q ss_pred EEEEEECCCC-CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHH-hhhcccCccCCCccCcccccCCcc
Q psy2159 92 IVFIIDASDR-SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVR-HFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 92 ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+++|+|++++ .++.....|...+.... ...++|+++|+||+|+.+.....+.. ..... ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~ 145 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE----------------LWG 145 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh----------------CCC
Confidence 9999999998 78888887777775542 12478999999999986643333322 22221 023
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||+++.|++++|+++.+.+
T Consensus 146 ~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 146 KPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CCEEEEecCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998764
No 129
>KOG0395|consensus
Probab=99.94 E-value=1e-25 Score=161.76 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=136.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+..+++++|.+|+|||+|..++..+.|. .+.||+...+ ..+..++ ..+.++||+|++++..+...++..+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4579999999999999999999999997 6888887644 4555655 6889999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|++++..||+.+..++..+.........|+++|+||+|+.. .++.++......... .+|++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-----------------~~f~E 144 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-----------------CAFIE 144 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-----------------CcEEE
Confidence 99999999999999999997766667789999999999976 677778777755433 56999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+.+.+|+++|..|++.+
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred eeccCCcCHHHHHHHHHHHH
Confidence 99999999999999998865
No 130
>KOG0076|consensus
Probab=99.94 E-value=1.1e-26 Score=157.64 Aligned_cols=165 Identities=33% Similarity=0.593 Sum_probs=146.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCC--------CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRT--------AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
.+....++++|+.++|||||+.+...... ....||+|.+.+++..++..+.+||..|++..+++|..+|..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHh
Confidence 46777899999999999999998765422 3577899999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+++|+++++.|+.....+.....+-...+.|+++.+||.|+.++....|+...++.. +....+..
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~-----------e~~~~rd~ 162 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLA-----------ELIPRRDN 162 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhh-----------hhcCCccC
Confidence 9999999999999999999999988887777899999999999999999999998888741 12556678
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.++||.+|+||++..+|+++.+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHH
Confidence 899999999999999999998765
No 131
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=4.6e-25 Score=154.74 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=105.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC---CC---ccccCCCcceeEEEeC-CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR---TA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~---~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.|+++|++|||||||++++.+.. +. ....|.+.....+.++ +..+.+|||||++++......+++++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68899999999999999999643 22 1233555555566666 78999999999998877777778899999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+++.. .......+..+ ... ..+|+++++||+|+..... .+++.+.+... .....++
T Consensus 82 ~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 143 (164)
T cd04171 82 VAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--------------FLADAPI 143 (164)
T ss_pred EECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--------------CcCCCcE
Confidence 9997732 12222222222 211 2349999999999865321 12333333221 1124689
Q ss_pred EEeccccCCChHHHHHHHhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+++||++|.|++++++++.+
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999999864
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.4e-24 Score=157.93 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccc---------hhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQA---------RRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~---------~~~~~~~ 85 (194)
...++|+++|++|||||||++++.+..+. .+.+|..+....+.+++. .+.+||+||..+. ...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 44579999999999999999999998643 356677777777777664 8999999997431 1111 23
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+..+|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+..... ... .
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~-----------------~ 176 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERL-----------------E 176 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHh-----------------h
Confidence 56799999999999988777655444433 33333578999999999986632221 111 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||+++.|+++++++|.+.|
T Consensus 177 ~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 2236799999999999999999998764
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=9.8e-25 Score=168.41 Aligned_cols=155 Identities=20% Similarity=0.292 Sum_probs=117.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCcc-------chhhHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ-------ARRVWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 90 (194)
..|.++|.|+||||||++++...+.. ..++|..++...+.+ ++..+.+||+||..+ ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47889999999999999999976532 356789999999988 557899999999753 1122334566799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHH--HHHhhhcccCccCCCccCcccccCCc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASED--EVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++++|+|+++.++++....|..++..+. ...++|+++|+||+|+.+..... +.....+. .
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~-----------------~ 301 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAA-----------------L 301 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHh-----------------c
Confidence 9999999998878888888877775542 23578999999999987532221 12222211 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++++||++++|+++++++|.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 26799999999999999999998765
No 134
>KOG0393|consensus
Probab=99.93 E-value=3e-26 Score=161.41 Aligned_cols=168 Identities=19% Similarity=0.309 Sum_probs=130.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+|++++|..++|||+++-.+..+.|+ .+.||+-.++ ..+..+ + +.+.+|||.||++|.++++..|.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4679999999999999999999999988 6888887654 456664 5 689999999999999999889999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
||++.++.||+++. .|+.++..+ .++.|+|+||+|.||+++... +++... ........++...+...+. ..|+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~~g~~lA~~iga--~~y~ 157 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYEQGLELAKEIGA--VKYL 157 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHHHHHHHHHHhCc--ceee
Confidence 99999999999986 566655443 389999999999999854311 111111 1222233344444444444 7899
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+|||+++.|+.++|+..+..
T Consensus 158 EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred eehhhhhCCcHHHHHHHHHH
Confidence 99999999999999987764
No 135
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.2e-24 Score=154.96 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC-------CC-ccccCC------Ccce----eEEEe-----CCEEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR-------TA-QHMPTL------HPTS----EELSM-----GDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~-------~~-~~~~t~------~~~~----~~~~~-----~~~~~~~~d~~g~~~~~ 79 (194)
+|+++|++++|||||++++.+.. +. .+.++. +.+. ..+.+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68899999999999999998742 11 222222 2221 12222 34788999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
..+..+++.+|++++|+|+++..++.....+.. +.. .++|+++++||+|+.... ..+..+.+...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~--------- 146 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDV--------- 146 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHH---------
Confidence 998999999999999999998766655544432 222 468999999999986532 22222222111
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.....++++||++|.|++++|++|.+.+
T Consensus 147 ----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 147 ----LGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ----hCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 111224589999999999999999998876
No 136
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=2e-24 Score=167.62 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccc-hhh-------Hhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQA-RRV-------WRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~-~~~-------~~~~~ 86 (194)
.+..+|+++|.+|||||||+|++.+.++..+.+ |.+...+.+..++..+.+|||||+.+. ..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 345689999999999999999999988754333 444445667788899999999998532 211 12246
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++.+.+... .
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---------------~ 188 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---------------H 188 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---------------C
Confidence 78999999999766 566665544444333 35678899999998653 344555554321 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++||++|.|+++++++|.+.+
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 236799999999999999999998865
No 137
>KOG0083|consensus
Probab=99.93 E-value=6.2e-27 Score=152.40 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=127.9
Q ss_pred EEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++|.+++|||+|+-++.++.|- ...+|+|.+.. .++.++ +++++|||.||+++++....+++++|+.++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6799999999999998888775 46667777653 345554 79999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+..||++...|+.++.++. .....+++++||+|+.+ .+..++-++..+.++ ++|.++||+
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-----------------ipfmetsak 143 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-----------------IPFMETSAK 143 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHC-----------------CCceecccc
Confidence 9999999999999987652 35678899999999954 566677777777766 899999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.||+..|-.|.+.+
T Consensus 144 tg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 144 TGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccccHhHHHHHHHHHH
Confidence 9999999999887754
No 138
>KOG0097|consensus
Probab=99.93 E-value=1.3e-24 Score=143.00 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=132.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.-++.+++|.-|+|||+|+..+..++|. ...+|++...+ .++..| .++++||+.|+++++...+.+++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 3468899999999999999999999886 66667777543 455555 789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++...++..+..|+.+.... ..++..+++++||.|+.. ++..+|.+.+.+.-+ ..|.
T Consensus 90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeeng-----------------l~fl 151 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-----------------LMFL 151 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-----------------eEEE
Confidence 99999999999999999887654 447788899999999865 788999999887755 7899
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++||++|++|++.|-...++
T Consensus 152 e~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 152 EASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred EecccccCcHHHHHHHHHHH
Confidence 99999999999988655443
No 139
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.92 E-value=2.8e-24 Score=155.94 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=126.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcC-CEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV-DAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~-d~ii~v~d 97 (194)
+|+++|++|||||||++++....+..+.++..++....... +..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68899999999999999999998876656555555554443 57899999999999998888889998 99999999
Q ss_pred CCCC-CChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCc-------------cCCC-----
Q psy2159 98 ASDR-SRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL-------------TTGK----- 156 (194)
Q Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~-------------~~~~----- 156 (194)
+++. .++.....++..++... ..++.|+++++||+|+....+.+.+++.++.+.. ....
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67777777777765432 2368999999999999886666666555543210 0000
Q ss_pred -----ccCcccccCCcceEEEEeccccCC-ChHHHHHHHhh
Q psy2159 157 -----EFTPREILQMRPMELFMCSVLKRQ-GFGNGFRWLAN 191 (194)
Q Consensus 157 -----~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 191 (194)
+..+........+.|+++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 112223333457889999998876 69999999865
No 140
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=4.6e-24 Score=164.54 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=117.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccc----hhh---HhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQA----RRV---WRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~---~~~~~~~~d 90 (194)
..|+++|.|+||||||++++...+.. ..++|..++...+.+++ ..+.+||+||..+. ..+ +..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47889999999999999999986532 35678889999999887 89999999997532 122 333456799
Q ss_pred EEEEEEECCCC---CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASDR---SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++++|+|+++. .+++....|..++.... ...++|+++|+||+|+......+++.+.+...
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~---------------- 301 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA---------------- 301 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----------------
Confidence 99999999876 56777766666664432 23578999999999997643333333333210
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..++++++||++++|++++++++.+.++
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 1257999999999999999999998764
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=1.8e-24 Score=148.59 Aligned_cols=134 Identities=20% Similarity=0.273 Sum_probs=95.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc-----cchhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV-----QARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~d~ii~v~d 97 (194)
||+++|++|+|||||++++.+..+. +.+|.+ +++.+ .+||+||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 7999999999999999999987653 233332 23333 789999983 2333333 4789999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++.++... . |.... ..|+++++||+|+.+ ....++..+.++... ..+++++||
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa 127 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAG----------------AEPIFEISS 127 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcC----------------CCcEEEEec
Confidence 9998887652 2 22221 249999999999865 333444444443321 136899999
Q ss_pred ccCCChHHHHHHHh
Q psy2159 177 LKRQGFGNGFRWLA 190 (194)
Q Consensus 177 ~~~~~v~~l~~~l~ 190 (194)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999974
No 142
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=8.1e-24 Score=149.10 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=109.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc---ccCCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH---MPTLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.|+++|++|+|||||++++....+... .+|.......+... +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 488999999999999999998876542 33444444455553 678999999999998888888889999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++... ......+..+ .. .++|+++++||+|+.... .+.+...+....... .. .....++++++||
T Consensus 82 d~~~~~~-~~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVM-PQTIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQG------ED-EWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCcc-HHHHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccc------cc-cccCcCcEEEeec
Confidence 9987542 2222222222 22 578999999999986532 233333332211000 00 0123468999999
Q ss_pred ccCCChHHHHHHHhhh
Q psy2159 177 LKRQGFGNGFRWLANY 192 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~ 192 (194)
++|.|+++++++|.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 149 KTGEGIDDLLEAILLL 164 (168)
T ss_pred ccCCCHHHHHHHHHHh
Confidence 9999999999999875
No 143
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=5.2e-24 Score=153.88 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=98.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-------CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
+||+++|.+|+|||||++++....+. .+.+|++.+. ..+.++ ...+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 48999999999999999999998876 5777887543 334442 2689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCC------------------CCCCCcEEEEeeCCCCCC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADD------------------ALTDVPILILGNKIDIFD 136 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piiiv~nK~D~~~ 136 (194)
+++|+|+++..||+++..|+.++.... ...+.|+++|+||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999887532 234689999999999865
No 144
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=1.7e-23 Score=162.72 Aligned_cols=151 Identities=23% Similarity=0.309 Sum_probs=112.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCcc---------chhhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ---------ARRVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~---------~~~~~~~~~ 86 (194)
..++|+++|.+++|||||+|++.+..+. ..++|.++....+.+ ++..+.+|||+|..+ +.+. ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 3479999999999999999999997642 467888888888888 568999999999722 2222 2247
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.++|++++|+|++++.++.....+. .++......++|+++|+||+|+.+. +++.....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------------------ 324 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------------------ 324 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------------------
Confidence 7899999999999988776654433 3333323357899999999998652 22221110
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 013579999999999999999998753
No 145
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=6e-24 Score=150.80 Aligned_cols=153 Identities=25% Similarity=0.299 Sum_probs=110.6
Q ss_pred EEcCCCCChHHHHHHHHcCCC--C-ccccCCCcceeEEEeC-CEEEEEEEcCCCccc----hhh---HhhhhhcCCEEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRT--A-QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQA----RRV---WRDYFPAVDAIVF 94 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~--~-~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~----~~~---~~~~~~~~d~ii~ 94 (194)
++|++|||||||++++.+... . ...+|..++...+.++ +..+.+||+||..+. ... +...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 579999999999999998864 2 3455677777778888 899999999997431 122 2334678999999
Q ss_pred EEECCCC------CChHHHHHHHHHHHhCCC------CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 95 IIDASDR------SRFPESKYELDNLLADDA------LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 95 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
|+|+++. .++.....+...+..... ..++|+++|+||+|+.......+......
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------------- 146 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL-------------- 146 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH--------------
Confidence 9999987 456666666666654432 24799999999999976433333210111
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......++++||+++.|++++++++.+.+
T Consensus 147 -~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 147 -ALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred -hcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 122336699999999999999999998753
No 146
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=2.8e-23 Score=144.20 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=115.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..||+++|++|||||||++++....+. .+.++.+.+. ..+..++ ..+.+||+||+..+...+..+...++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 368999999999999999999998854 3444444443 3366777 7899999999999998888888899999999
Q ss_pred EECCCC-CChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDR-SRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|.... .++.... .+...+..... .+.|+++++||+|+......++....+... ...++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~ 143 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIP 143 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEE
Confidence 998776 5565555 44444443322 278999999999997643344444444332 2245999
Q ss_pred eccccCCChHHHHHHHh
Q psy2159 174 CSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~ 190 (194)
+||++|.|+.+++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999874
No 147
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.92 E-value=3.4e-23 Score=148.49 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=114.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccc-------------------cCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHM-------------------PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|.+|+|||||++++.+....... .|.......+...+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4789999999999999999987665221 233334455666778999999999998888888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhhhcccCccCCCccC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE----VRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e----~~~~~~~~~~~~~~~~~ 159 (194)
.+++.+|++++|+|++++.+.. ....+..... .+.|+++++||+|+........ +.+.++....... .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST---K 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch---h
Confidence 8899999999999998865433 2333333322 5799999999999976333333 3333332110000 0
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-.........+++++||++|.|++++++++.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 0000122457899999999999999999999876
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=3.7e-23 Score=156.39 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=103.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d 90 (194)
+|+++|.+|||||||+|++.+.+++.+.+ |.....+....++..+.+|||||...... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987653332 33322333445567899999999754311 1334578899
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.+. +++........ ......+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~------------~~~~~~~ 140 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYA------------ILEDFKD 140 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHH------------hhcCCCc
Confidence 999999999866554 333333333 46899999999998642 22222221111 0011237
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++++++.+.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998865
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.3e-23 Score=144.59 Aligned_cols=141 Identities=22% Similarity=0.339 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc------hhhHhhhh--hcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA------RRVWRDYF--PAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~d 90 (194)
++|+++|.|+||||||+|++++.+.. .+..|+....+.+.+++..+.++|+||.-.. ......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 47999999999999999999998843 3555777777889999999999999994322 22333443 5799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+++.|+|+++ ++.......++++ .++|+++++||+|+.+ ....+.+.+.++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------ 135 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------ 135 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred EEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence 9999999988 4455555666655 4799999999999755 334555666553
Q ss_pred cceEEEEeccccCCChHHHHHHH
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
++++++||++++|+++++++|
T Consensus 136 --~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTTBTHHHHHHHH
T ss_pred --CCEEEEEeCCCcCHHHHHhhC
Confidence 789999999999999999875
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.91 E-value=8.3e-23 Score=142.12 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 89 (194)
++|+++|++|+|||||++++.+...... ..|.......+...+..+.+||+||..+... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 4899999999999999999998765422 2233333455667788999999999765432 123456789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... . ......
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----~-----------------~~~~~~ 132 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----L-----------------SLLAGK 132 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----c-----------------cccCCC
Confidence 99999999998776666543322 367999999999998763322 1 122236
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||+++.|+++++++|.+.+
T Consensus 133 ~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 799999999999999999998765
No 151
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=3.6e-23 Score=142.42 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=114.7
Q ss_pred EEcCCCCChHHHHHHHHcCCC-C-ccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRT-A-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++|++|+|||||++++.+... . ...+|. ......... +..+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998877 3 444554 555444443 578999999999988887788889999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH--hhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVR--HFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
++.++.....++..........+.|+++++||+|+......+... ... ......+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~ 143 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL----------------AKELGVPYFETSAK 143 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH----------------HhhcCCcEEEEecC
Confidence 988888887774444445556789999999999987644333321 111 12233789999999
Q ss_pred cCCChHHHHHHHhh
Q psy2159 178 KRQGFGNGFRWLAN 191 (194)
Q Consensus 178 ~~~~v~~l~~~l~~ 191 (194)
++.|+++++++|.+
T Consensus 144 ~~~~i~~~~~~l~~ 157 (157)
T cd00882 144 TGENVEELFEELAE 157 (157)
T ss_pred CCCChHHHHHHHhC
Confidence 99999999999864
No 152
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.1e-23 Score=143.52 Aligned_cols=144 Identities=24% Similarity=0.286 Sum_probs=103.8
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhhh--cCCEEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYFP--AVDAIVF 94 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~--~~d~ii~ 94 (194)
++|.+|+|||||++++.+..+. . ...|.......+.+++..+.+|||||+.++.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999987633 2 33355566677888888999999999876553 3455554 8999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|.++.+. ...++..+.. .++|+++++||+|+.+..... +........ ..++++
T Consensus 81 v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 136 (158)
T cd01879 81 VVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELL-----------------GVPVVP 136 (158)
T ss_pred EeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhh-----------------CCCeEE
Confidence 999987543 2334444432 468999999999997632221 222222211 257999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++++++.+..
T Consensus 137 iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEccCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=8.1e-23 Score=147.30 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC----CCC------ccccCCCcceeEEEeC--------------CEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND----RTA------QHMPTLHPTSEELSMG--------------DIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~~~d~~g~~~ 77 (194)
++|+++|++++|||||++++... .+. ....|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 111 1234555554444443 67899999999976
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCcc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLT 153 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~ 153 (194)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~-- 153 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL-- 153 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH--
Confidence 6554445567789999999998754433322221 1222 35799999999998753222 22333221110
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......++++++||++|+|++++++++.+++
T Consensus 154 --------~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 154 --------EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred --------HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 00112347899999999999999999999886
No 154
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=4.2e-23 Score=156.38 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=109.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC---------------CEEEEEEEcCCCccch
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG---------------DIVFTTHDLGGHVQAR 79 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~~~~~d~~g~~~~~ 79 (194)
....+||+++|..|||||||++++....+. .+.+|++.+. ..+.++ .+.+.+||++|++++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 446789999999999999999999998876 5778888764 444543 2679999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC-----------CCCCcEEEEeeCCCCCCC--------CCH
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA-----------LTDVPILILGNKIDIFDA--------ASE 140 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~D~~~~--------~~~ 140 (194)
.++..+++++|++|+|+|+++..+|..+..|+..+..... ..+.|++||+||+|+... ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999998876531 135899999999998652 135
Q ss_pred HHHHhhhccc
Q psy2159 141 DEVRHFFGLY 150 (194)
Q Consensus 141 ~e~~~~~~~~ 150 (194)
++.+++.+..
T Consensus 178 e~a~~~A~~~ 187 (334)
T PLN00023 178 DAARQWVEKQ 187 (334)
T ss_pred HHHHHHHHHc
Confidence 6666666553
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=1.5e-23 Score=152.20 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCC-----------CccchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 86 (194)
.+..+|+++|.+|+|||||++++.+..+. ...|+.......+..+ .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999987654 2233222222333333 689999999 345555555554
Q ss_pred h----cCCEEEEEEECCCCCCh----H-----HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhhhcccC
Q psy2159 87 P----AVDAIVFIIDASDRSRF----P-----ESKYELDNLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYG 151 (194)
Q Consensus 87 ~----~~d~ii~v~d~~~~~~~----~-----~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~ 151 (194)
. .++++++|+|.+..... . .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 45788889887652211 0 011112222222 478999999999986532 1223333332100
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......+++++||++| |+++++++|.+.+
T Consensus 162 -----------~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 -----------PWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----------cccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 00000136899999999 9999999998865
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=1.2e-22 Score=164.42 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc----------chhhH-hh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRVW-RD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~-~~ 84 (194)
...+|+++|.+++|||||+|++.+..... ...|.+.....+.+++..+.+|||||..+ +.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999886532 23344444567778888999999999632 22222 23
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++.+|++++|+|+++..++.... ++..+.. .++|+++|+||+|+.+.....+....+.... .
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~ 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------A 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------c
Confidence 578999999999999987776653 3443332 5789999999999975322222222222111 1
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++||++|.|++++|+.+.+.+
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 11235789999999999999999998754
No 157
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=8.2e-23 Score=142.23 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=102.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcCCEE
Q psy2159 25 LFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAI 92 (194)
Q Consensus 25 ~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d~i 92 (194)
+++|.+|+|||||++++.+.... ....|..........++..+.+|||||+..... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 122233444566777889999999999887543 334567889999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|..+..+... ..+...+.. .+.|+++++||+|+.+.... ...+.... ..+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~~----------------~~~~~ 136 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSLG----------------FGEPI 136 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhcC----------------CCCeE
Confidence 99999987543333 233333333 35899999999998763211 22221111 12579
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+++
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEecccCCCHHHHHHHHHhhC
Confidence 999999999999999998864
No 158
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=6.8e-23 Score=163.98 Aligned_cols=155 Identities=24% Similarity=0.298 Sum_probs=112.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCcc----chh---hHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ----ARR---VWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----~~~---~~~~~~~~~d~ 91 (194)
..|+++|.|+||||||+++|.+.+.. .+++|..++...+.+++..+.+||+||..+ ... .+..++..+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 47899999999999999999976543 467789999999999999999999999642 111 12334678999
Q ss_pred EEEEEECCCC----CChHHHHHHHHHHHhCC----------CCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCC
Q psy2159 92 IVFIIDASDR----SRFPESKYELDNLLADD----------ALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGK 156 (194)
Q Consensus 92 ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~ 156 (194)
+++|+|+++. ..+.....+..++.... ...++|++||+||+|+++..... .+...+..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~------- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA------- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-------
Confidence 9999999763 23444444333443221 23578999999999986532221 22222221
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++++||++++|+++++++|.+.+
T Consensus 313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 313 ----------RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 136899999999999999999998765
No 159
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.90 E-value=2.3e-22 Score=145.14 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=100.9
Q ss_pred eEEEEcCCCCChHHHHHHHHc--CCCCccc-------------cCCCc----ceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN--DRTAQHM-------------PTLHP----TSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~--~~~~~~~-------------~t~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|.+++|||||++++.. ..+.... .+.+. ....+..++..+.+|||||++++...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 789999999999999999997 4443211 12222 2345667789999999999999999999
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+++.+|++++|+|+++.. +.....++..... .++|+++++||+|+..... .+++.+.+....
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------- 149 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG--------- 149 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC---------
Confidence 9999999999999998742 3444444444332 4789999999999865322 233333332111
Q ss_pred ccccCCcceEEEEeccccCCChH
Q psy2159 161 REILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
.......++++++||++|.|+.
T Consensus 150 -~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 150 -ATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred -CccccCccCEEEeehhcccccc
Confidence 0012224689999999997653
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=4.4e-22 Score=140.57 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 84 (194)
++++|+++|.+|+|||||++++.+..... ...+.......+..++..+.+||+||..+... ....
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 36789999999999999999999876431 22223333345667788899999999753310 1123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.+..+|++++|+|.+++.+.... ..+..... .+.|+++++||+|+.+. ...+++.+.+....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----------- 144 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL----------- 144 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-----------
Confidence 46789999999999987665443 22222222 46899999999998764 33444444443321
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||+++.|++++++++.+.
T Consensus 145 -~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 -PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 11123679999999999999999998764
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.9e-22 Score=159.52 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=112.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC-CEEEEEEEcCCCcc----chhhHh---hhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARRVWR---DYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~~~---~~~~~~d~ 91 (194)
.|+++|.|+||||||++++++.+.. .+++|..++...+.++ +..+.+||+||..+ ...+.. .+++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7899999999999999999987632 4677888888888887 78999999999753 222323 33566999
Q ss_pred EEEEEECCCC---CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDR---SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|+++. .+++....+..++..+. ...++|++||+||+|+... .+.+....+...
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~---------------- 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLG---------------- 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhC----------------
Confidence 9999999864 45666666666654432 2357999999999998432 223333322211
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++++|+++++++|.+.+
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998765
No 162
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.5e-22 Score=162.45 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=107.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCcc--------chhhHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 87 (194)
+..+|+++|.+|||||||+|++.+.....+.++.+.+ ...+..++..+.+|||||++. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 4468999999999999999999988765444444443 445667788999999999763 2334455788
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+.... . +....... . .
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~-~-~~~~~~~~-g------------~--- 173 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGE-A-DAAALWSL-G------------L--- 173 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccc-h-hhHHHHhc-C------------C---
Confidence 9999999999998765543 233333332 579999999999986421 1 11111111 1 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..+++||++|.|++++|+++.+.+
T Consensus 174 -~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 -GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred -CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1247999999999999999998765
No 163
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2.3e-22 Score=161.33 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 86 (194)
...++|+++|.+|+|||||+|++.+.+.. ....|.+.....+..++..+.+|||||..+.... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 45689999999999999999999987643 2334555556778888999999999998754321 23357
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|++++.++..... |.. ..+.|+++|+||+|+.+..... ..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------~~----------------- 342 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------EE----------------- 342 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------hc-----------------
Confidence 88999999999999877664332 222 3578999999999986532221 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 343 ~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 343 NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 115689999999999999999998764
No 164
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.90 E-value=1.1e-22 Score=146.11 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=113.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEE--eCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELS--MGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 76 (194)
+..+|+++|+.++|||||+++|...... . ..-|.......+. .++..+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4568999999999999999999965421 0 2224555566677 778999999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh-----cccC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF-----GLYG 151 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~-----~~~~ 151 (194)
.+.......++.+|++++|+|+.+.. -......+..+.. .+.|+++++||+|+.. ...++..+.+ +...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~-~~~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGI-QPQTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBS-THHHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccc-ccccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 98888888899999999999998753 2333444444433 5788999999999873 1222222222 1111
Q ss_pred ccCCCccCcccccCC-cceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 152 LTTGKEFTPREILQM-RPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
... ..++++++||.+|.|+++|++.|.+.++
T Consensus 156 ------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3589999999999999999999998764
No 165
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=1.9e-22 Score=143.13 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=105.1
Q ss_pred ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC
Q psy2159 48 QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 48 ~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (194)
.+.||++.+.. .+.+++ ..+.+|||+|++++...+..+++++|++++|||++++.+|..+..|+..+.... .++.
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 57788887653 355555 789999999999999999999999999999999999999999999988887653 3578
Q ss_pred cEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 124 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 124 piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++|+||+|+.. ....++.....+... +.+++|||++|.||+++|++|.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~~~~~~-----------------~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQKAQEYN-----------------TMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999864 345555555543322 5789999999999999999998765
No 166
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.7e-22 Score=141.13 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=96.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccch----hhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR----RVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~~~~~d~ii~v~d~ 98 (194)
+|+++|++|+|||||+|++.+.... . .....+.+... .+||+||+.... ......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-----~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A-----RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C-----ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865311 1 12222333332 369999973222 2222336789999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++..++.. .++..+ ..++|+++++||+|+.+ ...+++.+.++... ...+++++||++
T Consensus 75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~~ 131 (158)
T PRK15467 75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSHD 131 (158)
T ss_pred CCcccccC--HHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECCC
Confidence 98766532 333332 14679999999999865 34555565554422 125899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|+|++++|+++.+.+
T Consensus 132 g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 132 PQSVQQLVDYLASLT 146 (158)
T ss_pred ccCHHHHHHHHHHhc
Confidence 999999999998765
No 167
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=2.7e-22 Score=161.08 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=110.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh-----------Hhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV-----------WRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 84 (194)
..++++++|.+++|||||+|++.+..... ...|.......+..++..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45799999999999999999999876432 223333444566678889999999997543321 123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
+++.+|++++|+|+++..+.... ..+....+ .++|+++|+||+|+. +....+++.+.+....
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------ 313 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------ 313 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence 57889999999999986655443 23333322 478999999999997 2223344444443322
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||++|.|++++|+++.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 12234689999999999999999998764
No 168
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=6.1e-22 Score=158.15 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=108.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRD 84 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~ 84 (194)
...+.++|+++|++|+|||||+|++.+..... ...|.+.....+.+++..+.+|||||+.+.... ...
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 34577899999999999999999999876432 222333345677888999999999998654432 235
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++.+|++++|+|++++.++... |+..+.. .++|+++|+||+|+.+. +.+++ .+..
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~---~~~~-------------- 334 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFF---VSSK-------------- 334 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhh---hhhc--------------
Confidence 67889999999999998776654 5544422 47899999999998653 22111 1111
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+||++ .||+++|+.+.+.+
T Consensus 335 ---~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 335 ---VLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ---CCceEEEEEec-CCHHHHHHHHHHHH
Confidence 14688999998 68999998887754
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=7.8e-22 Score=138.26 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=105.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 87 (194)
...+|+++|++|+|||||++++.+.......+ +.......+...+..+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999876542222 11112233444568899999999764332 2334577
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.+|++++|+|++++ +.....++...+.. .+.|+++++||+|+.. .....+....+.. ..
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---------------~~ 141 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---------------LG 141 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---------------cc
Confidence 89999999999986 23333333333332 3689999999999873 2233333333322 22
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+..+++++|++++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHHhhC
Confidence 246789999999999999999998754
No 170
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=3.5e-22 Score=146.75 Aligned_cols=171 Identities=25% Similarity=0.293 Sum_probs=117.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCccee-E-EEeC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSE-E-LSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~-~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+|+++|++|||||||++++.++.+.. +.+|.+.... . .... ..++.+||++|+++++..+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999999884 5556554332 2 2222 46799999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCCcc-CcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEF-TPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (194)
+|.....++.+....|...+......+.|+++++||+|+....... .+........ ..... ............+++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREV--VLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCc--chhhhHhHHhhhhhcccceeE
Confidence 9999955566655545444444333579999999999998743221 1111111000 00000 000001111233899
Q ss_pred eccc--cCCChHHHHHHHhhhc
Q psy2159 174 CSVL--KRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~--~~~~v~~l~~~l~~~i 193 (194)
+|++ .+.++.++|..+.+.+
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHH
Confidence 9999 9999999999887654
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=9.4e-22 Score=161.50 Aligned_cols=161 Identities=24% Similarity=0.272 Sum_probs=115.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-c--cCCCcceeEEEeCCE-EEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-M--PTLHPTSEELSMGDI-VFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+..++.+|+++|++++|||||++++.+..+... . .|.......+..++. .+.+|||||++.+..++...+..+|++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 456788999999999999999999998776532 2 234444455666544 899999999999999988889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++.. ..+....+... ...+.|+++++||+|+... ..+++...+..... ....+ ....+++
T Consensus 163 ILVVda~dgv-~~qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~-------~~~~~-~~~~~~v 228 (587)
T TIGR00487 163 VLVVAADDGV-MPQTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGL-------VPEDW-GGDTIFV 228 (587)
T ss_pred EEEEECCCCC-CHhHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhh-------hHHhc-CCCceEE
Confidence 9999988743 23333333322 2257899999999998653 45556555533210 00001 1235799
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|+|++++++++..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999864
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=5.3e-22 Score=144.13 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe---------------------------CC----
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM---------------------------GD---- 64 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~---------------------------~~---- 64 (194)
.+|+++|+.|+|||||++.+.+..... ...|.......+.+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 378999999999999999997652210 11111111111111 02
Q ss_pred --EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--
Q psy2159 65 --IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-- 140 (194)
Q Consensus 65 --~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-- 140 (194)
..+.+||+||++++...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999988887777788899999999998742222223333333222 23579999999998653222
Q ss_pred --HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 141 --DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 141 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++.+.++.. ....++++++||++|+|+++++++|.+.+
T Consensus 158 ~~~~i~~~~~~~--------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFVKGT--------------IAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHhcc--------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2233333221 12246799999999999999999999876
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.2e-21 Score=155.79 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccc--hhhH------hhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQA--RRVW------RDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~------~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+.+.. ..+.|.++....+..++. .+.+|||+|..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 456788888888887764 8899999998432 2222 2336789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+.+... ..... . . .+. .
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~-~--------------~~~--~ 337 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-D-E--------------ENK--P 337 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-H-h--------------cCC--C
Confidence 999999999998766665432 2233322235789999999999865311 11111 0 0 010 1
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++.+||++|.|+++++++|.+.+
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 258899999999999999998765
No 174
>PRK00089 era GTPase Era; Reviewed
Probab=99.89 E-value=1.4e-21 Score=149.51 Aligned_cols=155 Identities=22% Similarity=0.309 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccch--------hhHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQAR--------RVWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 87 (194)
+...|+++|++|||||||+|++.+.+.....+....+ ......++..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 5567899999999999999999998765433322222 22333455799999999975432 22333567
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+++...++... ....
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~------------~~~~ 144 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKD--KEELLPLLEELS------------ELMD 144 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCC--HHHHHHHHHHHH------------hhCC
Confidence 89999999999882 33334444444432 46899999999999632 223333332221 1122
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||+++.|++++++++.+.+
T Consensus 145 ~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 145 FAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 46799999999999999999998875
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.88 E-value=1.5e-21 Score=140.96 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCcceeEEEe-CCEEEEEEEcCCCc----------cchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTSEELSM-GDIVFTTHDLGGHV----------QARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~----------~~~~~~~~~~ 86 (194)
....+|+++|++|+|||||++++.+.++ ..+.++.+.+...-.+ -+..+.+||+||.. ++......++
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 4668999999999999999999998763 4555565544322111 13689999999953 2333334444
Q ss_pred hc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 87 PA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 87 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.. .+++++|+|.+++.+. ...++...+.. .+.|+++++||+|+......++....+....
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l------------ 164 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL------------ 164 (196)
T ss_pred HhCccceEEEEEEecCCCCCH--HHHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH------------
Confidence 43 4678888998775433 22233333332 4689999999999876433333222222111
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......++++||+++.|++++++.|.+.+
T Consensus 165 -~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 165 -KFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -HhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 11136789999999999999999998875
No 176
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=144.13 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccch--------hhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQAR--------RVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~ 86 (194)
.+..-++++|.|++|||||+|++.+.+.+.+++ |...-.+.+..++..+.++||||.-+-+ ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 455678899999999999999999999875444 4444456677788999999999955422 2233457
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+++|+++||+|++++ +.....++.+.+.. .+.|+++++||+|+..... ...+.+.+.. .
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---------------~ 143 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---------------L 143 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---------------h
Confidence 889999999999884 34444455554443 5679999999999877544 3444444443 3
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..+..++++||++|.|++.|.+.+.+.++
T Consensus 144 ~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 144 LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 34568999999999999999999988763
No 177
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.5e-21 Score=135.56 Aligned_cols=151 Identities=26% Similarity=0.276 Sum_probs=106.5
Q ss_pred EEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeC-CEEEEEEEcCCCccchh-------hHhhhhhcCCEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-------VWRDYFPAVDAIV 93 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ii 93 (194)
++|++|||||||++++.+..... ...|........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 57999999999999999875542 222333334444444 57999999999876542 3445778999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|.++........ +..... ..+.|+++++||+|+.......+......... ......++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 143 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA 143 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence 999999977665554 222222 26889999999999977544444322111111 2334578999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+++.|++++++++.+.+
T Consensus 144 ~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 144 VSALTGEGIDELREALIEAL 163 (163)
T ss_pred EeeeccCCHHHHHHHHHhhC
Confidence 99999999999999998764
No 178
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.88 E-value=4.6e-21 Score=161.06 Aligned_cols=161 Identities=21% Similarity=0.216 Sum_probs=116.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+..++..|+++|+.++|||||+++|....+.. ...|.......+.+++..+.+|||||+..+..++...+..+|+++
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 45688999999999999999999998876542 122344444567777899999999999999999988899999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|+++.. .......+... ...+.|+++++||+|+... ..+++...+.... .....+ ...+++++
T Consensus 366 LVVdAddGv-~~qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~-------~~~e~~-g~~vp~vp 431 (787)
T PRK05306 366 LVVAADDGV-MPQTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYG-------LVPEEW-GGDTIFVP 431 (787)
T ss_pred EEEECCCCC-CHhHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhc-------ccHHHh-CCCceEEE
Confidence 999998743 22323333322 2257899999999999653 3444444433221 000011 12378999
Q ss_pred eccccCCChHHHHHHHhh
Q psy2159 174 CSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~ 191 (194)
+||++|.|+++++++|..
T Consensus 432 vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 432 VSAKTGEGIDELLEAILL 449 (787)
T ss_pred EeCCCCCCchHHHHhhhh
Confidence 999999999999999864
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.1e-21 Score=155.21 Aligned_cols=146 Identities=23% Similarity=0.285 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc--------chhhHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+..... ...|.+.....+..++..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999887532 22344555677888889999999999886 223345567889
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+.+..+. ....+..++.. .++|+++++||+|+... .++..+.... . .-
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l-g----------------~~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL-G----------------LG 137 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc-C----------------CC
Confidence 999999999875332 22333333333 37899999999997541 1222222211 1 12
Q ss_pred EEEEeccccCCChHHHHHHHhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.++++||++|.|++++++++.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 3799999999999999999976
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=3.4e-21 Score=151.53 Aligned_cols=157 Identities=19% Similarity=0.273 Sum_probs=112.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccch-------hhHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQAR-------RVWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 91 (194)
.|.++|.|+||||||+|++.+.+.. .+.+|..+....+..++ ..+.++|+||..+.. .....+++.+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6889999999999999999986542 46678888888888875 579999999975421 122345788999
Q ss_pred EEEEEECC---CCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDAS---DRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|++ ....+.....++.++... ....++|+++|+||+|+.......+....+... .. .
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-------------~~-~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-------------LG-W 306 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-------------hC-C
Confidence 99999988 344566666666665443 122468999999999986532222222222110 00 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||+++.|+++++++|.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12589999999999999999998865
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=6e-21 Score=153.28 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=106.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCCc--------cchhhHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 90 (194)
+|+++|.+|||||||+|++.+.....+ ..|.+.....+..++..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 478999999999999999998775432 234444567778889999999999963 33444566788999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|..+.. ......+..++.. .++|+++|+||+|+..... ...+.. .. ....
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~~-~l----------------g~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEFY-SL----------------GFGE 136 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCcccc--cHHHHH-hc----------------CCCC
Confidence 999999998743 3333334444433 4789999999999865221 111111 11 1135
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++++++.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 89999999999999999998765
No 182
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=8.9e-21 Score=130.56 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=128.5
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----------c---ccCCCcceeEEEeCC-EEEEEEEcCCCccchhhH
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------H---MPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----------~---~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~ 82 (194)
....+.+|++.|+-++||||+++.+....... . ..|+..+++...+.+ ..+.+++||||+++.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34577899999999999999999999876421 1 135566677777776 899999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.-+.++++++|+++|.+.+..+ ....+.++..... ..|++|.+||.|+....+++++.+.++...
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----------- 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----------- 150 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc-----------
Confidence 9999999999999999998888 3333444444422 299999999999999999999999987641
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...++++.+|.++++..+.++.+..+
T Consensus 151 ----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 ----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----CCCceeeeecccchhHHHHHHHHHhh
Confidence 24789999999999999999988764
No 183
>KOG4252|consensus
Probab=99.87 E-value=1.7e-23 Score=142.91 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=131.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce----eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS----EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++++++|..++||||++++++.+-|. .+..|++.+. ..+...+..+.+||++|++++......+|+++.+-
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 456789999999999999999999988776 5666777653 23334457889999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++||+-+|..||+....|...+... ...+|.++|-||+|+.+ .....++....++.. ..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~R 157 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KR 157 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hh
Confidence 9999999999999999999998554 47899999999999987 355556655555433 66
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+|+++..||.+.|.+|.+++
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 89999999999999999998764
No 184
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=3.2e-21 Score=137.51 Aligned_cols=144 Identities=20% Similarity=0.287 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCccee--EEEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
.+..+|+++|++|+|||||+|++.+.. ...+.++.+.+.. ....+ ..+.+||+||... +......+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 577899999999999999999999886 3455556555432 22233 3799999999532 22233344
Q ss_pred hh---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCcc
Q psy2159 86 FP---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 86 ~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~ 158 (194)
++ .++++++|+|.+..-+.... .+..++.. .+.|+++++||+|+.+... .+++++.++..
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-------- 161 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-------- 161 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--------
Confidence 44 35899999999875433332 33333333 4789999999999875322 23333333321
Q ss_pred CcccccCCcceEEEEeccccCCChH
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
...+.++++||++|+|++
T Consensus 162 -------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 -------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -------cCCCceEEEECCCCCCCC
Confidence 123579999999999974
No 185
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=1.1e-20 Score=155.81 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC-------CC-ccccC------CCccee----EEEe---CC--EEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR-------TA-QHMPT------LHPTSE----ELSM---GD--IVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~-------~~-~~~~t------~~~~~~----~~~~---~~--~~~~~~d~~g~~~~~ 79 (194)
+++++|+.++|||||++++.... +. ++.++ .|.+.. .+.+ ++ ..+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 78899999999999999998752 11 22222 234332 2333 22 789999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
..+..++..+|++++|+|+++..+......|+... . .+.|+++++||+|+.... .++..+.+....
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~l-------- 150 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEVI-------- 150 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHHh--------
Confidence 98899999999999999999876666555444332 2 467999999999986532 222222221110
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++|++|.+.+
T Consensus 151 -----g~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 151 -----GLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -----CCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 11113589999999999999999998865
No 186
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=1.5e-20 Score=156.72 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=113.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEe----CCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSM----GDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
+..+...|+++|+.++|||||++++....+.. ...|.......+.. .+..+.+|||||++.+..++..++..+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999876652 12233333333332 348999999999999999999899999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+++.... .....+..+ . ..+.|+++++||+|+... ..+++.+.+..... ... .....+
T Consensus 320 DiaILVVDA~dGv~~-QT~E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l-------l~e-~~g~~v 385 (742)
T CHL00189 320 DIAILIIAADDGVKP-QTIEAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNL-------IPE-KWGGDT 385 (742)
T ss_pred CEEEEEEECcCCCCh-hhHHHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhcc-------chH-hhCCCc
Confidence 999999999874322 222223332 1 257899999999998763 34445444432210 000 011247
Q ss_pred EEEEeccccCCChHHHHHHHhhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++++||++|.|+++++++|...
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhh
Confidence 89999999999999999998753
No 187
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.2e-20 Score=159.23 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCcc----------chhh-Hhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRV-WRDY 85 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~~ 85 (194)
..+|+++|.+|||||||+|++.+.+.. ....|.+.....+.+++..+.+|||||..+ +... ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 479999999999999999999998743 233345555566778888899999999642 1111 1234
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
++.+|++++|+|+++..+..... .+..+.. .++|+++|+||+|+.+....+.+.+.+.... ..
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~~ 592 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------DR 592 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------cC
Confidence 67899999999999877666554 3444432 4789999999999976433334433332211 12
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++++.+.+.+
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2335679999999999999999987753
No 188
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=3.3e-20 Score=137.21 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=106.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~i 92 (194)
+++++|++|+|||||++++.+.... ..++|..+..+.+.+++..+++||+||+.+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987532 34567777888888999999999999975432 1234568899999
Q ss_pred EEEEECCCCCC-hHHHHHHH----------------------------------------HHHHhCC-------------
Q psy2159 93 VFIIDASDRSR-FPESKYEL----------------------------------------DNLLADD------------- 118 (194)
Q Consensus 93 i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~~~------------- 118 (194)
++|+|+++... ...+...+ ..++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999977442 11111111 1111110
Q ss_pred -----------CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 119 -----------ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 119 -----------~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.....|+++|+||+|+.. .++.....+. ..++++||++|.|++++|+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~~~-------------------~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLARQ-------------------PNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHhcC-------------------CCEEEEcCCCCCCHHHHHH
Confidence 112368999999999854 3444432211 3489999999999999999
Q ss_pred HHhhhcC
Q psy2159 188 WLANYID 194 (194)
Q Consensus 188 ~l~~~i~ 194 (194)
.+.+.++
T Consensus 220 ~i~~~L~ 226 (233)
T cd01896 220 RIWDKLG 226 (233)
T ss_pred HHHHHhC
Confidence 9988763
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=1.1e-20 Score=152.00 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=108.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccchh-----------hHh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQARR-----------VWR 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 83 (194)
...++|+++|.+|+|||||+|++++.......+..+.+ ...+..++..+.+|||||..+... ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35689999999999999999999987643333322222 344556788999999999643211 112
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++.+|++++|+|++++.+.... ..+..+ .. .++|+++++||+|+.+....+++.+.+....
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~-~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------ 313 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLA-LE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------ 313 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------
Confidence 357789999999999987654443 223333 22 4689999999999875333344444443222
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||++|.|++++++.+.+.
T Consensus 314 ~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 314 PFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 12234689999999999999999998763
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=2.6e-20 Score=157.22 Aligned_cols=149 Identities=22% Similarity=0.282 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce----eEEEeCCEEEEEEEcCCCcc--------chhhHhhhhhc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS----EELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPA 88 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~ 88 (194)
..+|+++|.+++|||||+|++++.....+.++.+.+. .....++..+.+|||||... +......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 3579999999999999999999877654444444443 34556778999999999763 22334456789
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|++++|+|+++. +......+...+.. .++|+++|+||+|+.... .+....... . .
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-g------------~---- 410 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-G------------L---- 410 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-C------------C----
Confidence 9999999999763 34444444444433 679999999999986421 122222211 1 1
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++||++|.|++++++++.+.+
T Consensus 411 ~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCeEEEECCCCCCchHHHHHHHHhc
Confidence 2357899999999999999998765
No 191
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=9e-21 Score=156.24 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=109.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC---C-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT---A-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~---~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.|+++|++++|||||+++|.+... + . ...|.+.....+.+++..+.+||+||++++...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 3688999999999999999997432 2 1 22344445566778889999999999999988888888999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHH----HHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+++.. ..+....+.. +.. .+.| +++++||+|+.+....+ ++.+.+.... . ....+
T Consensus 81 VDa~~G~-~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~------------~-~~~~~ 142 (581)
T TIGR00475 81 VDADEGV-MTQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI------------F-LKNAK 142 (581)
T ss_pred EECCCCC-cHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC------------C-CCCCc
Confidence 9998742 2333333322 222 3567 99999999997632222 2333332211 0 12478
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|+|++++++++.+.+
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHH
Confidence 99999999999999999987653
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=1.5e-20 Score=150.67 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=104.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.+++++++++|++++|||||+++|+...-. ....|.+.....++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 467899999999999999999999843211 1223455555667778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---- 139 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---- 139 (194)
+..+.+|||||++++.......+..+|++++|+|+++..++.....+...++... ...|+++++||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998876655555788999999999987322322222222222221 2347999999999865211
Q ss_pred --HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 140 --EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 140 --~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
.+++.+.++... .....++++++||++|+|++++
T Consensus 161 ~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCcccc
Confidence 123444443322 2223478999999999999873
No 193
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.85 E-value=1.1e-21 Score=130.67 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=80.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCccee--EEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
||+|+|++|||||||+++|.+..+. .+.++.+.+.. .... ....+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 6899999999999999999998876 22222233222 2222 335689999999998887767778999999999
Q ss_pred EECCCCCChHHHHH---HHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 96 IDASDRSRFPESKY---ELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 96 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
+|++++.++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 45555432 35699999999998
No 194
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.85 E-value=9.4e-21 Score=151.75 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=103.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCC--CC--------------------------------ccccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDR--TA--------------------------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 62 (194)
..++.++++++|+.++|||||+++|+... .. ....|.+.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 45688899999999999999999998521 11 012233334455666
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAAS-- 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-- 139 (194)
++..+.+||+||++++.......+..+|++++|+|+++.+++..... ....+.... ...|+++++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 78999999999999887666666789999999999998753322111 111222221 2357999999999964211
Q ss_pred ----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 140 ----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 140 ----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+++.+.++... .....++++++||++|.|+.+
T Consensus 161 ~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence 123333343322 222457899999999999986
No 195
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.85 E-value=5.8e-20 Score=132.25 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC----------C---------ccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT----------A---------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
++++|+++|+.++|||||+++|+.... . ....|.......++.++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 467899999999999999999985310 0 111133333344555678899999999998877
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYGLTT 154 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~~~~ 154 (194)
.....+..+|++++|+|+.... .......+..+.. .++| +|+++||+|+..... .+ ++.+.+....
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g--- 152 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGP-MPQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG--- 152 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc---
Confidence 6677788999999999987742 2233333443332 3556 789999999864211 12 2333333322
Q ss_pred CCccCcccccCCcceEEEEeccccCCCh
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
.....++++++||.+|.|+
T Consensus 153 ---------~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 153 ---------FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ---------ccccCCeEEEeeCccccCC
Confidence 2234588999999999985
No 196
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=4.9e-20 Score=134.33 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=95.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc----------------------------------cccCCCcceeEEEeCCEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ----------------------------------HMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 68 (194)
+|+++|++++|||||+++|+...-.. ...|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58899999999999999997543210 12244444556667788999
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhh
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHF 146 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~ 146 (194)
+|||||+.++.......+..+|++++|+|+++.. ...... ...++... ...++++++||+|+..... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV-LEQTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc-cHhHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999887766666788999999999998753 122222 22222221 2245788999999865211 1122222
Q ss_pred hcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 147 FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
++... ...+...++++++||++|.|+.+
T Consensus 157 ~~~~~----------~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFA----------AKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHH----------HHcCCCCceEEEEeCCCCCCCcc
Confidence 21110 00222336799999999999875
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=1.2e-19 Score=149.89 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC--CC------ccc------cCCCcc----eeEEEeC-----CEEEEEEEcCCCccc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR--TA------QHM------PTLHPT----SEELSMG-----DIVFTTHDLGGHVQA 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~--~~------~~~------~t~~~~----~~~~~~~-----~~~~~~~d~~g~~~~ 78 (194)
-+++++|+.++|||||+.++.... +. ++. .+.+.+ ...+.+. +..+++|||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 388999999999999999998632 11 111 112222 2233332 478999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCcc
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
...+..++..+|++++|+|+++.........|. .... .+.|+++++||+|+.... .++..+.+...
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-------- 153 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-------- 153 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH--------
Confidence 988889999999999999998865544433332 2222 468999999999986532 22222222111
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.....++++||++|.|+++++++|.+.+
T Consensus 154 -----lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 154 -----IGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred -----hCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 011124589999999999999999998765
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=7.5e-20 Score=142.41 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=111.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 88 (194)
..|+++|.|++|||||.|+|++.+.+- +..|.+..++..+..+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 578899999999999999999998764 4445666678899999999999999977432 223345678
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|+++||+|.... .....+.+..++.. .++|+++|+||+|-.. ..+...++... ..
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efysl-----------------G~ 139 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSL-----------------GF 139 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhc-----------------CC
Confidence 9999999998773 34444555555543 5799999999999752 12223333322 12
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..+++||.+|.|+.+|.+++++.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 4589999999999999999999875
No 199
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=2.6e-19 Score=132.67 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=113.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++|+|||||++++....-. . ...|.......+..++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5789999999999999999864211 0 011223334567778899999999999999888
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhhhcccCccCC---
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTG--- 155 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~e~~~~~~~~~~~~~--- 155 (194)
+..+++.+|++++|+|+++... .....++..+.. .++|+++++||+|+... ...+++++.+......-+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 8888999999999999988543 233444444432 47899999999998752 223334444332100000
Q ss_pred ---------------------------CccCc--------------ccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 156 ---------------------------KEFTP--------------REILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 156 ---------------------------~~~~~--------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++|.. .-......+|++..||.++.|++.|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 00000 0001334678888999999999999999998763
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=7.6e-20 Score=145.44 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcc------ccCCCcceeE----------------E----Ee------CCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH------MPTLHPTSEE----------------L----SM------GDIV 66 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~------~~t~~~~~~~----------------~----~~------~~~~ 66 (194)
+++++|+++|++++|||||+++|.+...... .-|....... . +. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999976432211 0111111000 0 01 2468
Q ss_pred EEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HH
Q psy2159 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DE 142 (194)
Q Consensus 67 ~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e 142 (194)
+.+||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998743123333333332211 23579999999998753222 22
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.. .....++++++||++|+|+++++++|.+.+
T Consensus 159 i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 159 IKEFVKG--------------TVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHhhhhh--------------cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2222211 111247899999999999999999998754
No 201
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.84 E-value=7.3e-20 Score=134.41 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=97.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeCCEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~~~~~~ 68 (194)
+|+++|++++|||||+.+|+...-. ....|.......+..++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4789999999999999998642110 011234444566778889999
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC------ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CC--
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS------RFPESKYELDNLLADDALTDVPILILGNKIDIFDA-AS-- 139 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~-- 139 (194)
+||+||+..+...+...++.+|++++|+|+++.. ........+... .. ...+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 9999999877776666778899999999998842 111222222222 21 134689999999999742 11
Q ss_pred -HHHHHhh----hcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 140 -EDEVRHF----FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 140 -~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
.+++.+. ++... ...+.++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCC
Confidence 2233332 22222 23345889999999999986
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.83 E-value=6.4e-20 Score=151.39 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=98.7
Q ss_pred cCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchhh------Hhhhh--hcCCEEEEEE
Q psy2159 28 GLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV------WRDYF--PAVDAIVFII 96 (194)
Q Consensus 28 G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~d~ii~v~ 96 (194)
|.+|||||||+|++.+..+. . ...|.+.....+++++..+.+||+||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987652 2 222344444567788889999999999876542 33333 3689999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
|.++.+ ....+..++.+ .+.|+++++||+|+.+.... .+.....+..+ .+++++|
T Consensus 81 Dat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-----------------~pvv~tS 136 (591)
T TIGR00437 81 DASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-----------------VPVVPTS 136 (591)
T ss_pred cCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-----------------CCEEEEE
Confidence 998743 23333344433 47899999999998642211 12222222212 6799999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|+|++++++++.+.
T Consensus 137 A~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 137 ATEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999764
No 203
>KOG3883|consensus
Probab=99.83 E-value=4.1e-19 Score=118.49 Aligned_cols=157 Identities=21% Similarity=0.311 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcce-eEEEeCC---EEEEEEEcCCCccc-hhhHhhhhhcCCE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTS-EELSMGD---IVFTTHDLGGHVQA-RRVWRDYFPAVDA 91 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~-~~~~~~~---~~~~~~d~~g~~~~-~~~~~~~~~~~d~ 91 (194)
+.+++++.|..++|||+++..+...... ...||+...+ ..++.+. ..+.++||.|...+ ..+-..+++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5679999999999999999999876543 4556655443 2333332 47999999999887 4566677888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|++..+++||+.+...-..+-++......|+++++||+|+.+ ....+-...|.+.+. +
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-----------------v 150 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-----------------V 150 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhh-----------------e
Confidence 999999999999999988777777777778899999999999944 556666666666555 8
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++|.++.++-|-|..+...+
T Consensus 151 kl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 151 KLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred eEEEEEeccchhhhhHHHHHHHhc
Confidence 899999999999999999887654
No 204
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=2.3e-19 Score=147.26 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-----ccCCCcceeEEEe----------------CCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----MPTLHPTSEELSM----------------GDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~ 77 (194)
.++.-|+++|++++|||||++++.+..+... +.+++.+...... ....+.+|||||++.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 3566789999999999999999998866522 2223332211111 012388999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHH
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEV 143 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~ 143 (194)
+..++..+++.+|++++|+|+++..... ....+..+ .. .+.|+++++||+|+.+... .+++
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQ-TQEALNIL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9999998999999999999998732211 11222222 22 4789999999999864211 0111
Q ss_pred Hh-----------hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 144 RH-----------FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 144 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.. .+....-. .+.+...+ ......+++++||++|+|++++.+++..
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~-~e~~~~i~-~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFE-AERFDRVT-DFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-HHhhhhhh-hcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 11 01111000 00000000 1123578999999999999999998864
No 205
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.83 E-value=4.1e-19 Score=138.70 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=112.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRD 84 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~ 84 (194)
+-...++++++|.|++|||||+|.|.+.+-+.+++ |.+.-.+.+.++|..+.+.||.|..+.... ...
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 44688999999999999999999999998764444 555556788999999999999998764322 123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+..+|.+++|+|.+.+.+-.... +.+ ....++|+++|.||.|+......... +...
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-~~~~---------------- 349 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE-KLAN---------------- 349 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh-hccC----------------
Confidence 477899999999999863222222 222 12367999999999999875553333 1111
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+||++|+|++.+.+.|.+.+
T Consensus 350 ---~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 350 ---GDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ---CCceEEEEecCccCHHHHHHHHHHHH
Confidence 13689999999999999999987754
No 206
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.83 E-value=2.8e-19 Score=147.29 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC--CCCcc-----------------ccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND--RTAQH-----------------MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|+.++|||||+++++.. .+... ..|+......+.+++.++.+|||||+.++...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6899999999999999999863 22211 1123333346778889999999999999998888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+++.+|++++|+|+.+. ...+...+|..+.. .++|+++++||+|+..... .+++.+.+......
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~------- 150 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD------- 150 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc-------
Confidence 899999999999999874 35666667766654 4689999999999865322 23344444322210
Q ss_pred ccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
.....++++++||++|. |++.+|+.+.+.+
T Consensus 151 ---~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 151 ---DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ---cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 01123679999999995 8999999998876
No 207
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.83 E-value=2.4e-19 Score=142.59 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=103.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe---------------------C-----CE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM---------------------G-----DI 65 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~---------------------~-----~~ 65 (194)
.+++++++++|+.++|||||+.+|.+..... ...|.........+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4688999999999999999999997642211 11222221110000 1 25
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----H
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----D 141 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~ 141 (194)
.+.+||+||++++..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.... +
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988776666667789999999999753222222223222111 23478999999998763222 2
Q ss_pred HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 142 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++...++. .....++++++||++|.|+++++++|.+.+
T Consensus 163 ~i~~~l~~--------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKG--------------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhcc--------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 23322221 112247899999999999999999998754
No 208
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=7.4e-19 Score=131.45 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc-
Q psy2159 4 IWTKFREVLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA- 78 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~- 78 (194)
+...++..+..++... ....++|.|.|++|||||++++.+.+.. .+++|.+...+.++.+...++++||||.-+-
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 4456777888888665 5556667799999999999999998753 6888999999999999999999999995421
Q ss_pred --------hhhHhhhhhcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhc
Q psy2159 79 --------RRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148 (194)
Q Consensus 79 --------~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~ 148 (194)
.......-+-.++|+|++|++.-. +.+.....+.++... .+.|+++|+||+|..+....+++...+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 122233345578999999998754 455556677777555 4489999999999987656666666654
Q ss_pred ccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 149 LYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
... ......+++..+.+++.+-+.+..
T Consensus 307 ~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 307 EEG----------------GEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred hhc----------------cccccceeeeehhhHHHHHHHHHH
Confidence 432 123567788888888877665544
No 209
>KOG1489|consensus
Probab=99.83 E-value=1.3e-19 Score=134.54 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=117.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccch----h---hHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQAR----R---VWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~----~---~~~~~~~~~d~ 91 (194)
.+.++|.|++|||||++++...+.. ..++|+.|..+++.+++. .+++-|.||.-+.. . .+..+++.++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 5779999999999999999987653 678899999999999885 59999999965422 2 24455788999
Q ss_pred EEEEEECCCC---CChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCH--HHHHhhhcccCccCCCccCcccccC
Q psy2159 92 IVFIIDASDR---SRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASE--DEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 92 ii~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
.+||+|++.. +.++.....+.++-.+ ....+.|.++|+||+|+++.... .++.+.++.
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~---------------- 341 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN---------------- 341 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC----------------
Confidence 9999999998 7777777766666443 45577999999999998753222 334444422
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++++||++++|+.++.+.|.+.
T Consensus 342 ---~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 ---PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ---CcEEEeeeccccchHHHHHHHhhc
Confidence 369999999999999999988664
No 210
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.82 E-value=3.5e-19 Score=150.33 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh----------Hhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV----------WRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 86 (194)
+..+|+++|+||||||||+|++++.+.. ....|.......+..++..+.++|+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3568999999999999999999986542 1223443444566777889999999998765321 22232
Q ss_pred --hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccc
Q psy2159 87 --PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 87 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
..+|++++|+|.++.+. ...++.++.+ .++|+++++||+|+.+... ..+..+..+..+
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG------------ 142 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLG------------ 142 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC------------
Confidence 47899999999988543 3344445443 4789999999999864222 222222222222
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+++++||++|+|++++++.+.+.
T Consensus 143 -----~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 143 -----CPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred -----CCEEEEEeecCCCHHHHHHHHHHh
Confidence 679999999999999999998764
No 211
>KOG0090|consensus
Probab=99.82 E-value=1.6e-19 Score=127.11 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=133.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhh---cCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP---AVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~d~ii~v~d~ 98 (194)
-.++++|+.+||||+|.-+|..+.+..+.++..++.....+++....++|.||+++.+.-...++. .+.++|||+|+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDS 118 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEec
Confidence 478899999999999999999998888888999999999999888999999999998886666665 78999999998
Q ss_pred CC-CCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCC--------------------
Q psy2159 99 SD-RSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG-------------------- 155 (194)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~-------------------- 155 (194)
.. ......+.+.+.+++... .....|++|++||.|+.-+.+.+-+++.++++-...+
T Consensus 119 a~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tl 198 (238)
T KOG0090|consen 119 ATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTL 198 (238)
T ss_pred cccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 54 334566667777777654 3567899999999999988888888777765431111
Q ss_pred --CccCccc-ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 --KEFTPRE-ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 --~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.++-- .+....+.|.++|++++ +++++-+|+.+.+
T Consensus 199 g~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 199 GKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1111111 22335678999999999 8999999997754
No 212
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=6.1e-19 Score=145.26 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC--CCCcc-------------ccCCCcc----eeEEEeCCEEEEEEEcCCCccchhhH
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND--RTAQH-------------MPTLHPT----SEELSMGDIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~--~~~~~-------------~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~ 82 (194)
-+|+++|+.++|||||++++... .+... ..+.+.+ ...+.+++..+.+|||||+.++...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 48999999999999999999973 22211 1123333 23456678999999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcccCccCCCccC
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE---DEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~~~~~~~~~~~ 159 (194)
..+++.+|++++|+|+.+.. .......+..... .++|.++++||+|+...... +++.+.+.....
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~------- 153 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA------- 153 (607)
T ss_pred HHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc-------
Confidence 99999999999999998743 3344455555443 47899999999998764332 333333322110
Q ss_pred cccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
......++++++||++|. |+..+++.+.+.+
T Consensus 154 ---~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 154 ---TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred ---cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 011234789999999998 6899999988866
No 213
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.82 E-value=3e-19 Score=120.33 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc----cchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV----QARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~d~ii~v~d 97 (194)
.|++++|+.|||||||+++|.+.... +..|. .+.+.+ .++||||.- .+.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~~KTq-----~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-YKKTQ-----AIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-cCccc-----eeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 38999999999999999999986442 21221 223332 458999944 233333444568999999999
Q ss_pred CCCCCC-hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSR-FPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.+ |+- .+... ..+|+|-|+||+|+. ++...+..+++++..+ .. .+|++|
T Consensus 73 at~~~~~~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG--------------~~--~if~vS 127 (143)
T PF10662_consen 73 ATEPRSVFPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAG--------------VK--EIFEVS 127 (143)
T ss_pred CCCCCccCCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcC--------------CC--CeEEEE
Confidence 998643 222 11111 468999999999998 3556677777776644 22 369999
Q ss_pred cccCCChHHHHHHHhh
Q psy2159 176 VLKRQGFGNGFRWLAN 191 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~ 191 (194)
+.+|+|+++|.++|.+
T Consensus 128 ~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 128 AVTGEGIEELKDYLEE 143 (143)
T ss_pred CCCCcCHHHHHHHHhC
Confidence 9999999999999853
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.82 E-value=7.5e-19 Score=144.74 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=103.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEEe----CC-------E-----EEEEEEcCCCc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELSM----GD-------I-----VFTTHDLGGHV 76 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~~----~~-------~-----~~~~~d~~g~~ 76 (194)
..|+..|+++|++++|||||++++.+.......+ +.+.+...... .+ . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4678889999999999999999998765432222 33322211111 00 1 27899999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHH
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDE 142 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e 142 (194)
.+..++...+..+|++++|+|+++... ......+..+ .. .+.|+++++||+|+.+... ...
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQ-PQTIEAINIL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 999988888899999999999987311 1112222222 22 4789999999999853111 011
Q ss_pred -----------HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 143 -----------VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 143 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+...+...+-.. ..+...+.+ ...++++++||++|+|++++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~-e~~~~~~~~-~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSA-DRFDRVKDF-TKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhcc-CCCceEeeccCCCCCChHHHHHHHHH
Confidence 111121111000 000000111 23578999999999999999988753
No 215
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=1.6e-18 Score=135.06 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=120.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 84 (194)
.+++++++|.|++|||||+|++.+.+=.- ...|.+.-...+++++.++.++||.|..+-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999987553 34455555677888999999999999653211 1234
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.+..+|.+++|+|++.+ +......+..++.. .+++++|++||-|+.+. ...++.+..+....
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------- 320 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------- 320 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence 57789999999999985 45555556666655 68999999999998774 55666666665544
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++.+||++|.++.++|+++.+.
T Consensus 321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 44556789999999999999999998764
No 216
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.81 E-value=2e-18 Score=126.86 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=101.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc-----------------cccC-------CCcc-----------------eeEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-----------------HMPT-------LHPT-----------------SEELS 61 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~-----------------~~~t-------~~~~-----------------~~~~~ 61 (194)
+++++|+.++|||||++++....+.. ...| .+.+ .+.++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 57899999999999999999765431 0001 1111 13344
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhh--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
..+..+.+.|+||+.++.......+. .+|++++|+|+.+... ......+..+ .. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 55688999999999988665444443 6899999999877432 2233333333 33 4689999999999865333
Q ss_pred HHHH----HhhhcccCccC--------CCccCcccc-cCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 140 EDEV----RHFFGLYGLTT--------GKEFTPREI-LQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 140 ~~e~----~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.++. .+.+...+... .+.-..... ......+++.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3333 33332111000 000000111 1223458999999999999999988754
No 217
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.4e-18 Score=121.97 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=97.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCCEEEEEEEcCCCcc----------chhhHhhhhh--
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ----------ARRVWRDYFP-- 87 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 87 (194)
.|+++|++|+|||||++.+.+.... ...++.+.+.. .+..+ ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999999954443 44455444332 22333 3899999999543 2233333443
Q ss_pred -cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 -AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+++++++|......... ..+...+.. .+.|+++++||+|+................. . ...
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l----------~-~~~ 143 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKEL----------K-LFE 143 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHH----------H-hcc
Confidence 4578899999877532221 222222222 3589999999999865332222222222111 0 012
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||+++.|+.+++++|.+.+
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 336789999999999999999998754
No 218
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=1.4e-18 Score=143.78 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=103.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
-|+++|+.++|||||++++.+..... ...|+......+.. ++..+.+||+||++++.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 46788999999999999999643221 23344433334433 457799999999998877667778899999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+|+++.. .....+.+. ++.. .+.| +++|+||+|+.+....++..+.+.... ........+++++
T Consensus 82 Vda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l----------~~~~~~~~~ii~V 146 (614)
T PRK10512 82 VACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL----------REYGFAEAKLFVT 146 (614)
T ss_pred EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------HhcCCCCCcEEEE
Confidence 9988742 233333333 2222 2345 579999999865322223222222110 0011223679999
Q ss_pred ccccCCChHHHHHHHhhh
Q psy2159 175 SVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~ 192 (194)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 147 AATEGRGIDALREHLLQL 164 (614)
T ss_pred eCCCCCCCHHHHHHHHHh
Confidence 999999999999999764
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.80 E-value=2.1e-18 Score=136.70 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=107.0
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCC----------C---------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT----------A---------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
...+++++|+++|+.++|||||+++|++... . ....|.......+..++..+.++|+||+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 3467899999999999999999999986311 0 11112222223333456789999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCH-----HHHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASE-----DEVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~-----~e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. .......+..+.. .++| +|+++||+|+.+.... +++...+...
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 88776666678899999999988743 2333344443332 3567 6789999998642211 2333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC--------ChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ--------GFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~~i 193 (194)
. ......+++++||++|. ++.++++.+.+.+
T Consensus 162 ~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 162 D------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred C------------CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2 22234789999999983 6788888887654
No 220
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=4.8e-18 Score=134.48 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
.+++=+.++|+-..|||||+..+.+.......+ |.......+..+ ...+.+.|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 466778899999999999999999877653332 555555666664 36899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++.- .++..+-+. +....+.|+++.+||+|+++. .++.+...+...+ ...+.++ +...++
T Consensus 83 ILVVa~dDGv-~pQTiEAI~----hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~g-------l~~E~~g-g~v~~V 148 (509)
T COG0532 83 ILVVAADDGV-MPQTIEAIN----HAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYG-------LVPEEWG-GDVIFV 148 (509)
T ss_pred EEEEEccCCc-chhHHHHHH----HHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcC-------CCHhhcC-CceEEE
Confidence 9999998842 222222222 223378999999999999864 4555555555443 1122222 337899
Q ss_pred EeccccCCChHHHHHHHh
Q psy2159 173 MCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~ 190 (194)
++||++|+|+++|++.+.
T Consensus 149 pvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 149 PVSAKTGEGIDELLELIL 166 (509)
T ss_pred EeeccCCCCHHHHHHHHH
Confidence 999999999999999875
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=5.7e-18 Score=119.20 Aligned_cols=154 Identities=19% Similarity=0.297 Sum_probs=108.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCcceeE--EEeCCEEEEEEEcCCCcc----------chhhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSEE--LSMGDIVFTTHDLGGHVQ----------ARRVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~----------~~~~~~~~~ 86 (194)
....|+++|.+++|||||||++++.+ .+.++.|.|.+..- ++.++ .+.++|.||..- ...+...|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 55699999999999999999999966 57888888887643 33333 388999999542 122333344
Q ss_pred h---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccC
Q psy2159 87 P---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 87 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~ 159 (194)
+ +..++++++|+.++. ........+++.+ .+.|+++++||+|+...... ..+.+.+....
T Consensus 102 ~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-------- 168 (200)
T COG0218 102 EKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-------- 168 (200)
T ss_pred hhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--------
Confidence 3 357889999998853 4444455555555 68999999999999874333 23333333221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+ ++..|+.++.|++++.+.|.+.+
T Consensus 169 -----~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 169 -----PDDQW-VVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred -----Cccce-EEEEecccccCHHHHHHHHHHHh
Confidence 11222 88899999999999999998765
No 222
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.78 E-value=4.4e-19 Score=124.68 Aligned_cols=130 Identities=23% Similarity=0.368 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEe---CCEEEEEEEcCCCccchhhHhhh---hhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARRVWRDY---FPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~---~~~~d~ii~ 94 (194)
.-.++++|++|||||+|..+|..+....+.++..++.. ... .+..+.++|+||+++.+...... ...+.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 34688999999999999999999977766666644443 222 34689999999999988754443 778999999
Q ss_pred EEECCC-CCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC
Q psy2159 95 IIDASD-RSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYG 151 (194)
Q Consensus 95 v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~ 151 (194)
|+|++. ........+++.+++... .....|++|++||.|+..+.+...++..++.+.
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei 141 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEI 141 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHH
Confidence 999974 334566667777776542 246799999999999998888888877776643
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.3e-17 Score=132.31 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=105.3
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcC-------CCC------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKND-------RTA------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
+-.+++++++++|++++|||||+++|++. ++. ....|.......++.++..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34578899999999999999999999862 110 01112222223344456789999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HH----HHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-ED----EVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~~----e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. .......+..+.. .++|.+ +++||+|+.+... .+ ++...+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 87766666678899999999998743 2333333433322 457755 6799999864211 12 333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
. ......+++++||.+|. ++.++++.|.+.+
T Consensus 162 ~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 162 D------------FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred C------------CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 2 11224789999999984 6788888877643
No 224
>PLN03126 Elongation factor Tu; Provisional
Probab=99.78 E-value=1.4e-17 Score=134.08 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=103.2
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCC------Cc-------------cccCCCcceeEEEeCCEEEEE
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT------AQ-------------HMPTLHPTSEELSMGDIVFTT 69 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~------~~-------------~~~t~~~~~~~~~~~~~~~~~ 69 (194)
|...+.....+++++++++|++++|||||+++|+.... .. ...|+......++.++..+.+
T Consensus 69 ~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~l 148 (478)
T PLN03126 69 RAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAH 148 (478)
T ss_pred HHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEE
Confidence 34445555678899999999999999999999995211 00 111222223345556789999
Q ss_pred EEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HH
Q psy2159 70 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EV 143 (194)
Q Consensus 70 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~ 143 (194)
+|+||+.++.......+..+|++++|+|+.+.. .....+.+..+.. .++| +++++||+|+.+... .+ ++
T Consensus 149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i 223 (478)
T PLN03126 149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEV 223 (478)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence 999999988776677778899999999988753 3344444444433 3667 788999999865211 22 23
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCC
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (194)
...+.... +....++++++||.+|.
T Consensus 224 ~~~l~~~g------------~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 224 RELLSSYE------------FPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHhcC------------CCcCcceEEEEEccccc
Confidence 33333322 22245889999998874
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.5e-17 Score=131.97 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=103.0
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC-------C-----C-------ccccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR-------T-----A-------QHMPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~-------~-----~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
+...+++++|+++|+.++|||||+++|.+.. + . ....|.......++.++..+.+|||||+
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 4456788999999999999999999997420 0 0 0222333333334445678999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-H----HHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-E----DEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~----~e~~~~~~~ 149 (194)
+++..........+|++++|+|+.+.. .......+..+.. .+.|.+ +++||+|+.+... . +++...++.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~-~~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 988766666677899999999998743 2333333444332 356655 6899999865211 1 234444433
Q ss_pred cCccCCCccCcccccCCcceEEEEeccccCC--------ChHHHHHHHhh
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLKRQ--------GFGNGFRWLAN 191 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~ 191 (194)
.. .....++++++||.+|. ++.++++++.+
T Consensus 161 ~~------------~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 161 YD------------FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred cC------------CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 22 22233789999999875 34556666543
No 226
>KOG0096|consensus
Probab=99.77 E-value=1.3e-18 Score=120.18 Aligned_cols=156 Identities=20% Similarity=0.307 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....+++++|..|.||||++++....+|. .+.+|+|.......+. ..++..|||.|++.+......++-...+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35678899999999999999999999998 5888999877654432 379999999999999888888887788999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+.||++..-++.++..|..++.... .++|+++++||.|.........-... .......+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~-----------------~rkknl~y~~ 148 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSF-----------------HRKKNLQYYE 148 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccccccee-----------------eecccceeEE
Confidence 9999999888999999999998764 56999999999997543212122222 2334478999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
.||+++.|++.-|-|+.+++
T Consensus 149 iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 149 ISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred eecccccccccchHHHhhhh
Confidence 99999999999999998875
No 227
>KOG1673|consensus
Probab=99.77 E-value=1.3e-18 Score=116.42 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=125.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..-+++|.++|.+..|||||+-.+.+..+. .+..|.|.+. +++...+ ..+.+||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 345679999999999999999999999886 4566677763 5566665 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHhhhcccCccCCCccCcccccCCcce
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++||++.+++...+..|+.+..... ...-.|++++|.|+.-..+++ ++......+ .+..+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~Y-------------Ak~mnA 161 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKY-------------AKVMNA 161 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHH-------------HHHhCC
Confidence 99999999999999999999986542 333447899999976644442 233222221 233446
Q ss_pred EEEEeccccCCChHHHHHHHhhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..+.||+.+..||+++|.-+..+
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHH
Confidence 78999999999999999877654
No 228
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=126.13 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=114.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC-CEEEEEEEcCCCccc--------hhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQA--------RRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~--------~~~~~~~~ 86 (194)
..-..|.++|-.++|||||+|++++.... +.+.|.+++...+.++ +..+.+-||.|.-+. ........
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 45567889999999999999999977643 6899999999999987 589999999995431 12223335
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|.++.|+|++++.....+ .-...++..-...++|+|+|.||+|+..+.. ....+.. ..
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---------------~~ 330 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---------------GS 330 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---------------cC
Confidence 679999999999999543333 3444555554556699999999999866432 1122211 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.+||++|.|++.|.+.|.+.+
T Consensus 331 --~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 331 --PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred --CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 1589999999999999999998765
No 229
>KOG1423|consensus
Probab=99.77 E-value=2.2e-17 Score=122.36 Aligned_cols=166 Identities=23% Similarity=0.244 Sum_probs=109.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh------------h
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------------V 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------------~ 81 (194)
..+.++++++|.|++|||||.|.+.+.+.+. +..|.....+.+..+...+.++||||.-.-.. -
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3577899999999999999999999998763 44455555677888889999999999543211 1
Q ss_pred HhhhhhcCCEEEEEEECCCCCC--hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCH----------------HH
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSR--FPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASE----------------DE 142 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~----------------~e 142 (194)
....+..+|+++.++|+++... ...+...+..+ ...|-+++.||+|.... ... .+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1224667999999999996322 22222333333 46789999999997641 001 11
Q ss_pred HHhhhcccCccCCCccCcccccCCcc-eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRP-MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.... .-+..+..+++.. -.+|.+||++|+|++++.++|+.+.
T Consensus 223 v~~~f~~~p----~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 223 VQEKFTDVP----SDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHHhccCC----cccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111111100 0111122223322 2599999999999999999998764
No 230
>CHL00071 tufA elongation factor Tu
Probab=99.77 E-value=1.5e-17 Score=132.47 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=98.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-------c------------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-------Q------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-------~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..+++++++++|++++|||||+++|++.... . ...|.......++.++..+.+.|+||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3578899999999999999999999964211 0 11122222233445667899999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYG 151 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~ 151 (194)
+.......+..+|++++|+|+.... .......+..+.. .++| +|+++||+|+.+... .+ ++...+....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8776666788999999999998643 2333344443332 4567 778999999975221 12 3333333322
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.....++++++||.+|.+
T Consensus 163 ------------~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 ------------FPGDDIPIVSGSALLALE 180 (409)
T ss_pred ------------CCCCcceEEEcchhhccc
Confidence 122347899999998863
No 231
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=1.4e-17 Score=121.94 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=76.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc------------cc----------CCCcceeEEEe-----CCEEEEEEEcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH------------MP----------TLHPTSEELSM-----GDIVFTTHDLGGH 75 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~d~~g~ 75 (194)
+|+++|+.|+|||||+++++....... .. |.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 588999999999999999987543211 01 11111122222 2378999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9988888888999999999999987655432 333343322 358999999999975
No 232
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=2.3e-17 Score=132.32 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=103.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC--C-------------------------c-------cccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT--A-------------------------Q-------HMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~--~-------------------------~-------~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+.++|||||+.+|+...- . . ...|+......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 457899999999999999999998874211 0 0 11123333445566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCCh-------HHHHHHHHHHHhCCCCCCC-cEEEEeeCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF-------PESKYELDNLLADDALTDV-PILILGNKIDI 134 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-piiiv~nK~D~ 134 (194)
++..++++|+||+++|.......+..+|++++|+|+++. .| ......+..... .++ ++|+++||+|+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence 778999999999999998888889999999999999873 23 233333333222 355 57889999997
Q ss_pred CC-CCC-------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 135 FD-AAS-------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 135 ~~-~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+ ... .+++...++..+ .....++|+++||.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence 62 111 234444444333 333357899999999999853
No 233
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=6e-18 Score=123.91 Aligned_cols=163 Identities=14% Similarity=0.265 Sum_probs=101.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeC-CEEEEEEEcCCCccchh-----hHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-----~~~~~~~~~d~i 92 (194)
||+++|+.||||||+.+.++.+..+ ...+|..++...+... ...+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7899999999999999999987655 3557777777777654 57999999999986544 346678999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|||+|+...+ +.....++...++. ...++..+.+.++|+|+..+...+++.+.....-. ..........+.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~------~~~~~~~~~~~~ 153 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIR------DELEDLGIEDIT 153 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHH------HHHHHTT-TSEE
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHH------HHhhhccccceE
Confidence 9999998544 44444444443332 34589999999999998763222222222111000 000011112478
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+|.-+ +.+-++|..+++.+
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTT
T ss_pred EEeccCcC-cHHHHHHHHHHHHH
Confidence 99999988 58999999988765
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=2.6e-17 Score=130.57 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=105.7
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
+..+++++++++|+.++|||||+++|++.... ....|.......+..++..+.+.||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 44578899999999999999999999863110 11112332233344456789999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-H----HHHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-E----DEVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~----~e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.... .......+..+.. .+.|.+ +++||+|+.+... . .++.+.+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 87776666688999999999998743 2333344433322 457876 6899999864211 1 1333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC----------ChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~ 192 (194)
. ......+++++||.+|. ++..+++.|.+.
T Consensus 162 ~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 D------------FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred C------------CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 2 22235789999999875 567788877654
No 235
>PRK13351 elongation factor G; Reviewed
Probab=99.75 E-value=6.7e-17 Score=136.51 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC--------------C-------ccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT--------------A-------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+..+|+++|+.|+|||||++++....- . ....|+......+..++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 345899999999999999999985321 0 1333555556678888999999999999998
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
...+..+++.+|++++|+|+++....... ..|..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 88888899999999999999886554433 33433322 47899999999998763
No 236
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.75 E-value=6.8e-17 Score=121.77 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=81.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--C-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--A-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++++|||||++++....- . ....|+......+..++..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 578999999999999999974211 0 0112334445667788899999999999988888
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+...++.+|++++|+|+.+.. .......+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV-EPQTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC-CHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 888899999999999998743 2223333443332 4689999999999875
No 237
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=3.5e-17 Score=131.28 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=103.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC--C--------------------------------ccccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT--A--------------------------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~--~--------------------------------~~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+.++|||||+.+|+...- . ....|.......++.
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 457889999999999999999999875210 0 011133334455667
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---Ch---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDNLLADDALTDVP-ILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 135 (194)
++..+.++|+||+.++.......+..+|++++|+|++... .+ .+....+..+.. .++| +|+++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 7889999999999998887777788999999999998742 11 233444443322 3555 67999999953
Q ss_pred C----CCCHHHHHh----hhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 136 D----AASEDEVRH----FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 136 ~----~~~~~e~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
. ....+++.+ .+.... .....++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence 2 122333333 333222 222358899999999999864
No 238
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=4.3e-17 Score=132.48 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhh--hcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYF--PAV 89 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~--~~~ 89 (194)
..++.++|+|++|||||.|++++.+.. ....|++.-.+.+.+.+..+++.|+||--... ...+.++ ...
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999987653 45567777778888999999999999954322 2333333 357
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|+++-|+|+++.+ ..-..-.++++ -+.|++++.|++|..+ ..+.+++.+.++
T Consensus 83 D~ivnVvDAtnLe---RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----------------- 138 (653)
T COG0370 83 DLIVNVVDATNLE---RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG----------------- 138 (653)
T ss_pred CEEEEEcccchHH---HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-----------------
Confidence 9999999999954 44444445544 4789999999999755 566666666664
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++.+.+.+.
T Consensus 139 ---vPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 139 ---VPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ---CCEEEEEeecCCCHHHHHHHHHHh
Confidence 789999999999999999998763
No 239
>KOG1145|consensus
Probab=99.75 E-value=3.9e-17 Score=129.15 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=118.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+.+++.-+.++|+-..|||||+..+.+........ |.+...-.+.. +|.++++.|||||..|.+++.......|.+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 55688888899999999999999999887653222 44444444444 568999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+..+|.- ..+.. +.+++....+.|+++.+||+|++.. +++.+...+-.++ -..+ .-...+.++
T Consensus 229 VLVVAadDGV-mpQT~----EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~g-------i~~E-~~GGdVQvi 294 (683)
T KOG1145|consen 229 VLVVAADDGV-MPQTL----EAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQG-------IVVE-DLGGDVQVI 294 (683)
T ss_pred EEEEEccCCc-cHhHH----HHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcC-------ccHH-HcCCceeEE
Confidence 9999988842 33322 3334445578999999999998764 4555555554433 1111 122346899
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|.|++.|-++++-
T Consensus 295 piSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILL 313 (683)
T ss_pred EeecccCCChHHHHHHHHH
Confidence 9999999999999988753
No 240
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=7.6e-17 Score=121.39 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--Ccc-----------------------ccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--AQH-----------------------MPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~~~-----------------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
+|+++|++|+|||||+++++...- ... ..++......++.++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 688999999999999999985321 110 0111222346777889999999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFG 148 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~ 148 (194)
+.......++.+|++++|+|+++... .....++ ..... .++|+++++||+|+..... .+++++.++
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLF-EVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHH-HHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 88766777899999999999987432 2223333 33332 5789999999999866432 355555443
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.74 E-value=3.8e-17 Score=130.04 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=95.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--c----------------------------------cccCCCcceeEEEeCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--Q----------------------------------HMPTLHPTSEELSMGDI 65 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 65 (194)
++++++|+.++|||||+++++...-. . ...|.+.....++.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743211 0 01123333455666778
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHH
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEV 143 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~ 143 (194)
.+.++||||+.++.......+..+|++++|+|+..... .+....+..+... ...++++++||+|+..... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999887666667889999999999876432 2222222222221 2346899999999865211 1222
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+.+.... ........+++++||++|+|+++
T Consensus 157 ~~~~~~~~----------~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFA----------EQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHH----------HHcCCCCccEEEeecccCCCCcc
Confidence 33222110 00122246799999999999886
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=3.5e-17 Score=118.33 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=96.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCc---ce--eEEEeC-CEEEEEEEcCCCccchhhH-----hhhhhc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHP---TS--EELSMG-DIVFTTHDLGGHVQARRVW-----RDYFPA 88 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~---~~--~~~~~~-~~~~~~~d~~g~~~~~~~~-----~~~~~~ 88 (194)
+++|+++|.+|+|||||+|.+.+..... ..++.+. +. ..+..+ ...+.+||+||..+..... ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999865432 2222221 11 111111 2478999999986432211 222567
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-C--------CHHHHHhhhcccCccCCCccC
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-A--------SEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~--------~~~e~~~~~~~~~~~~~~~~~ 159 (194)
+|+++++.+ + ++......+...+.. .+.|+++|+||+|+... . ..+++.+.+...- . .
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~-----~-~ 147 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC-----L-E 147 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH-----H-H
Confidence 888888743 2 355555555555544 36899999999998431 1 1222222221110 0 0
Q ss_pred cccccCCcceEEEEeccc--cCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVL--KRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~--~~~~v~~l~~~l~~~i 193 (194)
.....+....+++.+|+. .+.++..+.+.+...|
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 000112334679999998 6789999999998765
No 243
>PLN03127 Elongation factor Tu; Provisional
Probab=99.74 E-value=1.9e-16 Score=126.98 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=103.9
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcC------CCC-------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKND------RTA-------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~------~~~-------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
...+++++|+++|+.++|||||+++|.+. ... ....|.+.....++.++..+.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34678999999999999999999999732 100 02223444344455566889999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. ..+....+..+.. .++| +|+++||+|+.+... .+ ++.+.+...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 87665555567799999999987643 2333333333322 4678 578899999865211 11 222222221
Q ss_pred CccCCCccCcccccCCcceEEEEeccc---cCCC-------hHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVL---KRQG-------FGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------v~~l~~~l~~~i 193 (194)
. .....++++++||. +|.| +.++++++.+.+
T Consensus 211 ~------------~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 K------------FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred C------------CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 1 22234788898875 4554 778888887654
No 244
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.74 E-value=4.7e-17 Score=123.05 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=82.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++|+|||||++++...... . ...|.......+.+++..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5789999999999999998753211 0 122334445667778899999999999988777
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..++..+|++++|+|++...... ....|..+.. .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG-TEKLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCccCCC
Confidence 788899999999999998865433 2233333322 46899999999998764
No 245
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=3.9e-17 Score=131.92 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--c------------cc----------------------cCCCcceeEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q------------HM----------------------PTLHPTSEELS 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~------------~~----------------------~t~~~~~~~~~ 61 (194)
.+.+++|+++|+.++|||||+++|+...-. . .. .|+......++
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 478899999999999999999999854321 1 01 12222334455
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--C
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA--S 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~ 139 (194)
.++..+.++||||+..+.......+..+|++++|+|+..... ......+... ... ...|+++++||+|+.... .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHH-HHh--CCCceEEEEEeeccccchhHH
Confidence 667899999999999886655555789999999999976431 1111111111 111 235789999999986421 1
Q ss_pred HHHHHhhhcccCccCCCccCcccccC-CcceEEEEeccccCCChHHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l 185 (194)
.+++.+.+.... .... ....+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~----------~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFA----------EQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHH----------HhcCCCCCceEEEEEeecCCCcccc
Confidence 233333332111 0011 23478999999999999764
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.73 E-value=2.1e-16 Score=128.90 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC--Cc---c--------------------ccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT--AQ---H--------------------MPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~--~~---~--------------------~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+.-+|+++|++++|||||+++++...- .. + ..|+......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 455899999999999999999974211 00 0 0012222345777889999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFG 148 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~ 148 (194)
+.++......+++.+|++++|+|+++.. ......++... .. .++|+++++||+|+..... .+++++.+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVC-RL---RDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHH-Hh---cCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 9988887777889999999999998743 22333444333 22 5789999999999876433 245555443
No 247
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=2.7e-16 Score=115.20 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=78.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEeC----------CEEEEEEEcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSMG----------DIVFTTHDLG 73 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~d~~ 73 (194)
+|+++|+.++|||||+.+|....-. . ...|+........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6889999999999999999854211 0 011222222222332 5789999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
|+.++......+++.+|++++|+|+.+...... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999988899999999999999988654433 333444333 467999999999975
No 248
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.73 E-value=1.1e-16 Score=128.19 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=105.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEE---------------EeC-------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEEL---------------SMG------------- 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~---------------~~~------------- 63 (194)
.+++++|.++|+-..|||||+.+|.+..... ..-|+....... .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3678899999999999999999999864431 111211111100 010
Q ss_pred -----CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 64 -----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 64 -----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
...+.++|+||++.+-+.....+..+|++++|+|+.+.....+..+.+..+ ... .-.|+++++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence 247899999999988776666688899999999998742223333333322 211 235789999999987522
Q ss_pred CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++..+.+.... ........+++++||++|.|+++|++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l----------~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFV----------KGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHH----------HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222222222111 00112357899999999999999999998654
No 249
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.72 E-value=5.5e-16 Score=119.02 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe------------------------CCEEEEEEEcCCC-
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM------------------------GDIVFTTHDLGGH- 75 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~------------------------~~~~~~~~d~~g~- 75 (194)
|+++|.|++|||||+|++++..+. .++.|..++.+.... ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 478999999999999999988753 345666776654432 2257999999998
Q ss_pred ---ccchhhHhh---hhhcCCEEEEEEECCC
Q psy2159 76 ---VQARRVWRD---YFPAVDAIVFIIDASD 100 (194)
Q Consensus 76 ---~~~~~~~~~---~~~~~d~ii~v~d~~~ 100 (194)
.++..+... .++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444444 4889999999999973
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.8e-16 Score=116.21 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=109.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh-------hHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ 91 (194)
.+++++|+|.+|||||++.+++.+.. ..++|..+..+.+++.+..+++.|+||.-+..+ ......+.||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 37899999999999999999987643 678899999999999999999999998543221 23345789999
Q ss_pred EEEEEECCCCCC-hHHHHH----------------------------------------HHHHHHhCC------------
Q psy2159 92 IVFIIDASDRSR-FPESKY----------------------------------------ELDNLLADD------------ 118 (194)
Q Consensus 92 ii~v~d~~~~~~-~~~~~~----------------------------------------~~~~~~~~~------------ 118 (194)
+++|+|+..... .+.+.. .+..++...
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999986443 111111 111111110
Q ss_pred ------------CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHH
Q psy2159 119 ------------ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGF 186 (194)
Q Consensus 119 ------------~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 186 (194)
+..-+|.++|.||+|+.. .+++....+. ...+++||+.+.|++++.
T Consensus 224 vTlDd~id~l~~nrvY~p~l~v~NKiD~~~---~e~~~~l~~~-------------------~~~v~isa~~~~nld~L~ 281 (365)
T COG1163 224 VTLDDLIDALEGNRVYKPALYVVNKIDLPG---LEELERLARK-------------------PNSVPISAKKGINLDELK 281 (365)
T ss_pred CcHHHHHHHHhhcceeeeeEEEEecccccC---HHHHHHHHhc-------------------cceEEEecccCCCHHHHH
Confidence 112378899999999866 3444444432 358999999999999999
Q ss_pred HHHhhhc
Q psy2159 187 RWLANYI 193 (194)
Q Consensus 187 ~~l~~~i 193 (194)
+.|.+.+
T Consensus 282 e~i~~~L 288 (365)
T COG1163 282 ERIWDVL 288 (365)
T ss_pred HHHHHhh
Confidence 9998865
No 251
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.71 E-value=2.9e-16 Score=131.45 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=98.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--------------c----------------------ccCCCcceeEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--------------H----------------------MPTLHPTSEELS 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--------------~----------------------~~t~~~~~~~~~ 61 (194)
.++.++|+++|++++|||||+++|+...-.. . ..|+......++
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 5677899999999999999999998643210 0 012223334556
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CC
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--AS 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~ 139 (194)
.++..+.++||||+.++.......+..+|++++|+|+..... ......+..+... ..+|+++++||+|+.+. ..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHH
Confidence 677889999999998876655556889999999999976432 2222222222111 23678999999998641 11
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+++...+.... ........+++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~----------~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFA----------AKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHH----------HHcCCCCccEEEEecccCCCccc
Confidence 223333322110 00122336799999999999874
No 252
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.5e-16 Score=122.53 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=103.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC------------------------Cc----------cccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT------------------------AQ----------HMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~------------------------~~----------~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+..+|||||+-+|+..-- +. ..-|+......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 357899999999999999999999986411 00 01122333345566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---C---hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---R---FPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+.+.+++.|+||+..+-.-....++.+|+.|+|+|+.+.+ + -.+.++. .++.. ...-..+||++||+|+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH--~~La~-tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH--AFLAR-TLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH--HHHHH-hcCCceEEEEEEcccccc
Confidence 6788999999999988777677788999999999998864 1 1111211 11111 113567899999999986
Q ss_pred --CCCHHHHHhhhcccCccCCCccCcccc--cCCcceEEEEeccccCCChHH
Q psy2159 137 --AASEDEVRHFFGLYGLTTGKEFTPREI--LQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 137 --~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
....+++.+.+..+. +. +....++|+++||.+|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~----------k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLL----------KMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHH----------HHcCCCccCCeEEecccccCCcccc
Confidence 333444444443311 11 233357899999999999865
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=7e-16 Score=102.25 Aligned_cols=103 Identities=24% Similarity=0.373 Sum_probs=73.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhhhcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYFPAV 89 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~~ 89 (194)
+|+++|.+|+|||||+|+|++.+.. ....|.......+.+++..+.++||||..... ......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986543 23445555566778899999999999965321 1122334789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
|++++|+|.+++. -+.....+..+ + .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~-~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI-TEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS-HHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC-CHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 9999999977621 12223333333 2 67899999998
No 254
>KOG1707|consensus
Probab=99.70 E-value=6.8e-17 Score=128.56 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=120.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce---eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS---EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
......||+++|..|+||||||-.+...+++...|..-+.+ ..+.-......+.|++..++.+......++.+|++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 46788999999999999999999999999875444322221 233334466899999877777777677799999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCH--HH-HHhhhcccCccCCCccCcccccCCcc
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFDAASE--DE-VRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~--~e-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++++++++.+.+...|..++.+.. ..+.|+|+|+||+|....... +. +........ ..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~---------------Ei 149 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA---------------EI 149 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH---------------HH
Confidence 99999999999999876666665432 367999999999998773222 22 222322211 11
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..++|||++-.++.++|....+.+
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhhee
Confidence 2379999999999999999877653
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.70 E-value=1.6e-15 Score=123.69 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccc------------------------cCCCcceeEEEeCCEEEEEEEcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHM------------------------PTLHPTSEELSMGDIVFTTHDLG 73 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~------------------------~t~~~~~~~~~~~~~~~~~~d~~ 73 (194)
.+.-+|+++|++++|||||+++++... ..... .|+......+++++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456699999999999999999986321 11100 01111234567788999999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|+.++.......++.+|++++|+|+++.. ......++ ..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~-~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLM-EVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHH-HHHHh---cCCCEEEEEECccccC
Confidence 99988776677789999999999998732 22333333 33333 5789999999999864
No 256
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.1e-16 Score=118.94 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=111.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC---CccccCCCcceeEEEeCC-EEEEEEEcCCCccchh-------hHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT---AQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARR-------VWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ 91 (194)
.+.++|.|++|||||++.+...+. ..+++|..|+.+.+...+ ..+.+-|.||.-+..+ .+..+++.+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 466899999999999999998764 378899999999998744 6799999999664321 24455778999
Q ss_pred EEEEEECCCCCC---hHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 92 IVFIIDASDRSR---FPESKYELDNLLAD-DALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 92 ii~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++.|+|++..+. .++......++..+ ....++|.+||+||+|+..+ ...++..+.+....
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--------------- 305 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--------------- 305 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc---------------
Confidence 999999987553 34444444444333 45578999999999996553 33444444443211
Q ss_pred cceE-EEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPME-LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~-~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+. ++++||.+++|++++...+.+.+
T Consensus 306 -~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 306 -GWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred -CCCcceeeehhcccCHHHHHHHHHHHH
Confidence 122 22299999999999999988765
No 257
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=4.9e-16 Score=112.30 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhhh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRDY 85 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 85 (194)
.+|+++|.+|+||||++|.+++.+... ...|..........++..+.++||||..+... .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876542 23466666677778899999999999654321 11222
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCHH--------HHHhhhcccCccCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFDAASED--------EVRHFFGLYGLTTGK 156 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~--------e~~~~~~~~~~~~~~ 156 (194)
..+.|++++|+++.+. + ......+..+.+... ..-.++++++|+.|.....+.+ .+...++.
T Consensus 81 ~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~------- 151 (196)
T cd01852 81 APGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK------- 151 (196)
T ss_pred CCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH-------
Confidence 4578999999998762 1 122222333322211 1126889999999976643333 23333333
Q ss_pred ccCcccccCCcceEEEEe--ccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMC--SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+...|-.. |+..+.++.+|++.+.+.+
T Consensus 152 -------c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 -------CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred -------hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 23332222222 3677889999999987654
No 258
>KOG4423|consensus
Probab=99.69 E-value=1.8e-18 Score=119.13 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=124.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC---EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+++|+|..|+|||+++.++....++ .+-.|++... .....+. +++++||..||+++..+..-+++.+.+.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 48899999999999999999998887 5677777753 3344444 6789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASE---DEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
||++...+|+....|..++-... +....|+++..||||..+.... ..+.++.+ .+.+.
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----------------engf~ 169 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----------------ENGFE 169 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----------------ccCcc
Confidence 99999999999999999986653 3334778999999998663222 23333332 33445
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++|+|.+.+++|+.+.+++.+
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHH
Confidence 689999999999999999998864
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.68 E-value=2e-15 Score=127.40 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+-.+|.++|++++|||||++++....-. ....|+......+..++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 3457899999999999999999753110 1122444455677888999999999999988
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
...+...++.+|++++|+|+.+... ......+..+.. .++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~-~qt~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVE-PQSETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 7778888999999999999987532 222333333322 46899999999998763
No 260
>KOG0462|consensus
Probab=99.68 E-value=1.1e-15 Score=120.96 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=111.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------c------ccc----CCCcceeEEEeCC---EEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------Q------HMP----TLHPTSEELSMGD---IVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------~------~~~----t~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~ 81 (194)
++.++.+-..|||||..++....-. + ... |+......+.+.+ +.++++|||||.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 6789999999999999999864221 1 111 2222234455555 89999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
....+.-|+++++|+|++... ..+....+....+ .+..+|.|+||+|++.+ .++++...+....
T Consensus 142 VsRslaac~G~lLvVDA~qGv-qAQT~anf~lAfe----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF---------- 205 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGV-QAQTVANFYLAFE----AGLAIIPVLNKIDLPSA-DPERVENQLFELF---------- 205 (650)
T ss_pred ehehhhhcCceEEEEEcCcCc-hHHHHHHHHHHHH----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh----------
Confidence 888899999999999998854 2232322323323 57889999999999874 4555555554432
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..+.-+++.+|||+|.|++++++++++.++
T Consensus 206 ---~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 206 ---DIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ---cCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 233357999999999999999999998763
No 261
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.9e-16 Score=113.94 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcc-eeEEEeCCEEEEEEEcCCCcc-------chhhHhhhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPT-SEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYF 86 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~-~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~ 86 (194)
..++++++++|..|+||||++|+++..... .+..+..++ ...-.+++..+.+||+||..+ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 458899999999999999999999965443 334344443 334456678999999999775 566677788
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---------CCHHHHHhhhcccCccCCCc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---------ASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---------~~~~e~~~~~~~~~~~~~~~ 157 (194)
...|.++++++..++. .......+.+++... .+.|+++++|.+|.... .+...+++.++... .
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~---~-- 187 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA---E-- 187 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH---H--
Confidence 8899999999998864 444455666665432 45899999999997542 12222222222110 0
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ....-.+..+++..|...+-|++++..++++.+
T Consensus 188 -~-~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 188 -A-LGRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred -H-HHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 0 000111245788888899999999999998876
No 262
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.67 E-value=1.9e-15 Score=117.49 Aligned_cols=136 Identities=19% Similarity=0.315 Sum_probs=98.9
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.+...+.+++..+.+||.+|+...++.|..++.++++++||+|+++ ...+......+..+.......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4555566778888999999999999999999999999999999999987 245777778888888888888
Q ss_pred CCcEEEEeeCCCCCCC-----------------CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 122 DVPILILGNKIDIFDA-----------------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~-----------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
+.|+++++||.|+... .+.++..+++....... ......+.+..+.++|.+-.++..
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~------~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRL------NRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHh------ccCCCCceEEEEEeeecccHHHHH
Confidence 9999999999997541 11222222221111000 000022456677899999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+.+.+.|
T Consensus 325 v~~~v~~~I 333 (342)
T smart00275 325 VFDAVKDII 333 (342)
T ss_pred HHHHHHHHH
Confidence 998876543
No 263
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.66 E-value=2.9e-15 Score=126.50 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=83.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
-+|+++|++++|||||++++....-. . ...|+......+.+++..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 38899999999999999999742211 0 11233444567788899999999999998887
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
.+...++.+|++++|+|+.+..... ....+..+ .. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 7888899999999999998754333 23333333 22 46899999999998763
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.66 E-value=2.1e-15 Score=116.32 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=100.0
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC----------CChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR----------SRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.....+.+++..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.......
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 55666667788889999999999999999999999999999999999873 45777778888888888888
Q ss_pred CCcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 122 DVPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 122 ~~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
++|+++++||.|+.. ....++..+++..... .......+.+....++|.+..++.
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~-------~~~~~~~~~~~~~~t~a~Dt~~i~ 300 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFL-------DLNRNPNKEIYPHFTCATDTENIR 300 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHH-------HhhcCCCCeEEEEeccccchHHHH
Confidence 999999999999643 1122222222221110 000012355667789999999999
Q ss_pred HHHHHHhhhc
Q psy2159 184 NGFRWLANYI 193 (194)
Q Consensus 184 ~l~~~l~~~i 193 (194)
.+|+.+.+.|
T Consensus 301 ~vf~~v~~~i 310 (317)
T cd00066 301 FVFDAVKDII 310 (317)
T ss_pred HHHHHHHHHH
Confidence 9999887643
No 265
>PRK00007 elongation factor G; Reviewed
Probab=99.65 E-value=8.5e-15 Score=123.64 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC--C-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT--A-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
-+|+++|++++|||||++++....- . ....|+......+..++..+.++||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 4899999999999999999974211 0 111244444566778889999999999988776
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.....++.+|++++|+|+..... ......+..+.. .++|.++++||+|+..
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~-~qt~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVE-PQSETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcc-hhhHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 66777889999999999876432 222333444433 4689999999999876
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.64 E-value=1e-14 Score=115.18 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe---------------------C---CEEEEEEEcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM---------------------G---DIVFTTHDLGG 74 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~---------------------~---~~~~~~~d~~g 74 (194)
++|+++|.|++|||||+|++++.++. .++.|..++.+.+.. + ...+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999988764 245566676654331 1 25689999999
Q ss_pred Cc----cchhhHhhh---hhcCCEEEEEEECC
Q psy2159 75 HV----QARRVWRDY---FPAVDAIVFIIDAS 99 (194)
Q Consensus 75 ~~----~~~~~~~~~---~~~~d~ii~v~d~~ 99 (194)
.. +...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 333443344 88999999999996
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.63 E-value=1.5e-14 Score=122.07 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=78.7
Q ss_pred EcCCCCChHHHHHHHHcCCCC---------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh
Q psy2159 27 LGLDNAGKTFLLQMLKNDRTA---------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 27 ~G~~~~GKStli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
+|++++|||||+++|....-. ....|++.....+.+++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999543211 12224444556788889999999999999887777788
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+|++++|+|++....... ...+..+.. .++|+++++||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999999988654332 233333322 4789999999999875
No 268
>KOG1191|consensus
Probab=99.62 E-value=7e-15 Score=115.32 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccch-h--------hHh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQAR-R--------VWR 83 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~-~--------~~~ 83 (194)
..+..++|+++|+|++|||||+|.+.+..-+.+.|..|.+ ...++.+|+++.+.||+|-.+.. . .-.
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 3467799999999999999999999999887666544443 56788999999999999977611 1 112
Q ss_pred hhhhcCCEEEEEEECCC--CCChHHHHHHHHHHHhC-----CCCCCCcEEEEeeCCCCCCCCCHHH--HHhhhcccCccC
Q psy2159 84 DYFPAVDAIVFIIDASD--RSRFPESKYELDNLLAD-----DALTDVPILILGNKIDIFDAASEDE--VRHFFGLYGLTT 154 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~-----~~~~~~piiiv~nK~D~~~~~~~~e--~~~~~~~~~~~~ 154 (194)
..+..+|++++|+|+.. -++-..+...+...-.. ......|++++.||.|+....+... ...+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~---- 419 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE---- 419 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccc----
Confidence 23677999999999933 22222222333332111 1123489999999999876422111 11111110
Q ss_pred CCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..........+|+++++|++.|.+++.+.+
T Consensus 420 ---------~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 420 ---------GRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ---------cCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 122233466699999999999999988764
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=3.3e-14 Score=115.77 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=74.9
Q ss_pred EEEEEEEcCCCccc-----hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-
Q psy2159 65 IVFTTHDLGGHVQA-----RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA- 138 (194)
Q Consensus 65 ~~~~~~d~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~- 138 (194)
..+.++||||.... .......+..+|+++||+|.....+..+ ..+...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 45888999997542 2234456889999999999987433332 2233333321 1135999999999986422
Q ss_pred -CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 139 -SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 139 -~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+.+...+.... ......+..++++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L----------~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTL----------MKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHH----------HhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2455555543210 001234567999999999999999999876
No 270
>PRK13768 GTPase; Provisional
Probab=99.61 E-value=9.3e-15 Score=109.37 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=76.4
Q ss_pred EEEEEEEcCCCccch---hhHhhhh---hc--CCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 65 IVFTTHDLGGHVQAR---RVWRDYF---PA--VDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~---~~~~~~~---~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
..+.+||+||+.+.. ..+..++ .. .+++++++|+.......... .++...... ...++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 368999999987643 3333332 22 79999999997654433332 222221111 11478999999999998
Q ss_pred CCCCHHHHHhhhcccC----ccCCC-c--cCc----ccc--cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 136 DAASEDEVRHFFGLYG----LTTGK-E--FTP----REI--LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 136 ~~~~~~e~~~~~~~~~----~~~~~-~--~~~----~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....++..+.++... ..... + ... ... ......+++++||++++|++++.++|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 7655555555544200 00000 0 000 000 001235789999999999999999998875
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.59 E-value=1.7e-14 Score=112.86 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=109.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------cccc----------CCCcceeEEEe-----CCEEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------QHMP----------TLHPTSEELSM-----GDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------~~~~----------t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~ 79 (194)
++.++.+-..|||||..++....-. +... |+..+...+.+ ..+.++++|||||.++.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 5678889999999999999875321 1222 22222223333 22789999999999988
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
......+..|.+.++|+|++..-.=+.+...+..+ + .+.-++-|+||+||+.+ +++.+++.++..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~A-dpervk~eIe~~--------- 155 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAA-DPERVKQEIEDI--------- 155 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCC-CHHHHHHHHHHH---------
Confidence 87777788899999999999854333334444444 2 57889999999999874 344555444332
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.+...-..+.||||+|.||++++++|++.++
T Consensus 156 ----iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 156 ----IGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ----hCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 2334467899999999999999999999873
No 272
>KOG1532|consensus
Probab=99.58 E-value=5.6e-15 Score=108.22 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=108.5
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----------------------------------CCCcceeE
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----------------------------------TLHPTSEE 59 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----------------------------------t~~~~~~~ 59 (194)
+.+...++.-|+++|..|||||||+++|..+-.....| ..||+-+.
T Consensus 12 a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 12 ASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred ccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 34556678888899999999999999998652221110 12222221
Q ss_pred EE-------------------eCCEEEEEEEcCCCccchhh-------Hhhhh-hcCCEEEEEEECCC---CCChHHHHH
Q psy2159 60 LS-------------------MGDIVFTTHDLGGHVQARRV-------WRDYF-PAVDAIVFIIDASD---RSRFPESKY 109 (194)
Q Consensus 60 ~~-------------------~~~~~~~~~d~~g~~~~~~~-------~~~~~-~~~d~ii~v~d~~~---~~~~~~~~~ 109 (194)
++ -+..++-++|||||-+...+ ...+. ...-+++||+|... +.+|..-.-
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl 171 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML 171 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH
Confidence 11 01256889999998864321 11122 34568899999744 556766666
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC---ccCc--------ccccCCcceEEEEecccc
Q psy2159 110 ELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK---EFTP--------REILQMRPMELFMCSVLK 178 (194)
Q Consensus 110 ~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~Sa~~ 178 (194)
+.-.++.. .+.|.|++.||+|+.+..=..++..-++...+..+. .+.- ..+.--+....+.+||.+
T Consensus 172 YAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 172 YACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 66666655 789999999999997733333333333222211110 0000 001112457789999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|.++.+.+
T Consensus 249 G~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 249 GEGFDDFFTAVDESV 263 (366)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999999987654
No 273
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=9.2e-14 Score=119.97 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=94.6
Q ss_pred CChHHHHHHHHcCCCCcccc---CCCcceeEEEeCC------------------EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 32 AGKTFLLQMLKNDRTAQHMP---TLHPTSEELSMGD------------------IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 32 ~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
++||||+.++.+...+...+ |.......+..+. -.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 55999999999887653222 4333333343331 12899999999999888877788899
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHhhh---------
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEVRHFF--------- 147 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~~~~~--------- 147 (194)
++++|+|+++.-. ......+. .+.. .++|+++++||+|+.+... .++..+.+
T Consensus 552 ivlLVVDa~~Gi~-~qT~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFK-PQTIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCC-HhHHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999987311 11222222 2232 3689999999999864211 01111111
Q ss_pred --cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 148 --GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+ -....+....+. ...++++++||++|+|+++|.++|..
T Consensus 627 ~L~~~G-~~~e~~~~~~d~-~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELG-FDADRFDRVQDF-TRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcC-cchhhhhhhhhc-CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1111 000000011112 34578999999999999999998853
No 274
>KOG1490|consensus
Probab=99.55 E-value=2.3e-14 Score=112.67 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhCCc-CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-
Q psy2159 5 WTKFREVLLRLGLW-KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR- 79 (194)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~- 79 (194)
+.-++..+.+++.. .+.-.++++|-|++|||||+|.+...... ..++|.+...+.+.+.-..+++.||||.-+..
T Consensus 151 LeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 151 LEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred HHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcch
Confidence 34456677777744 45556667799999999999999987754 46667777888888888899999999954321
Q ss_pred --------hhHhhhhhcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHh
Q psy2159 80 --------RVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRH 145 (194)
Q Consensus 80 --------~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~ 145 (194)
..+....+--.+|+|+.|++... |.......++++. .-+.++|+|+|+||+|+....+. +++.+
T Consensus 231 EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~ 308 (620)
T KOG1490|consen 231 EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQ 308 (620)
T ss_pred hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHH
Confidence 11222344557899999998744 4556566777763 44578999999999998662222 23333
Q ss_pred hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 146 FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+. ....++++.+|..+.+||.++....++.
T Consensus 309 ~~~----------------~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 309 TII----------------DDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred HHH----------------hccCceEEEecccchhceeeHHHHHHHH
Confidence 332 2233789999999999999887776654
No 275
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.55 E-value=1.4e-14 Score=107.28 Aligned_cols=125 Identities=13% Similarity=0.002 Sum_probs=60.1
Q ss_pred EEEEEEcCCCccchhhHhhhh--------hcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+.++|||||.+....+.... ...-++++++|.....+-.... ..+..... ....+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 699999999998765444322 3456889999987654422221 22222211 1115789999999999976
Q ss_pred CCCHHHHHhhhcccCcc--------CCCcc---CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 AASEDEVRHFFGLYGLT--------TGKEF---TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 ~~~~~e~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. .+...+++...... ..... ....+. .....++++|+++++|+.+++..+.+.+
T Consensus 171 ~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF-GLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC-SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22 22222221100000 00000 000111 1123799999999999999999987653
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.55 E-value=1.4e-13 Score=107.54 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=115.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------ccc------CCCcce----eEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------HMP------TLHPTS----EELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------~~~------t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|.++.+-..|||||+..++..+-. . ... ..|.++ .-+.+++.+++++|||||.++.....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 7899999999999999999976432 1 111 122222 24677889999999999999999999
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh---cccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF---GLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~---~~~~~~~~~~~~~ 160 (194)
..++-+|++++++|+.+.. +.+.+..+...+. .+.+.|+|+||+|.+..-+.+-+.+.+ -...+.+.
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de----- 156 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE----- 156 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh-----
Confidence 9999999999999998753 7788877777776 477889999999998754443333333 33332222
Q ss_pred ccccCCcceEEEEeccccC----------CChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKR----------QGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~i 193 (194)
....+++..|++.| .++..||+.|++.+
T Consensus 157 -----QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 157 -----QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred -----hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 23367888888765 37999999998865
No 277
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.55 E-value=6.7e-14 Score=105.97 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCcc-----------ccCCCcce--eEEEeCC--EEEEEEEcCCCccchh---h-
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----------MPTLHPTS--EELSMGD--IVFTTHDLGGHVQARR---V- 81 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~-----------~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~---~- 81 (194)
.++|+++|++|+|||||+|++++..+... .+|..... ..+..++ .++.+|||||...... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 46899999999999999999999876532 22332222 2344455 5799999999543210 0
Q ss_pred ----------------------Hhhhhh--cCCEEEEEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 82 ----------------------WRDYFP--AVDAIVFIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 82 ----------------------~~~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+...+. .+|+++|+++.+.. ..... ...+..+. ...|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 101222 46788888887652 23333 33344432 2589999999999865
No 278
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.54 E-value=2e-13 Score=100.57 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+...++..|+++|++|+|||||++.+.+.... ......|. .......+..+.++|+||.. ... ....+.+|++++
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 34567778889999999999999999875222 11111221 22233466889999999864 222 334678999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCCCC-CHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|.+.... .....+...+.. .+.|. ++++||.|+.+.. ..+++.+.+.... .. ......+++
T Consensus 110 viDa~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~---------~~-~~~~~~ki~ 174 (225)
T cd01882 110 LIDASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF---------WT-EVYQGAKLF 174 (225)
T ss_pred EEecCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH---------HH-hhCCCCcEE
Confidence 999876432 222333333332 35675 5599999987422 1233333332211 00 011336799
Q ss_pred EeccccCC
Q psy2159 173 MCSVLKRQ 180 (194)
Q Consensus 173 ~~Sa~~~~ 180 (194)
++||++.-
T Consensus 175 ~iSa~~~~ 182 (225)
T cd01882 175 YLSGIVHG 182 (225)
T ss_pred EEeeccCC
Confidence 99998764
No 279
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=8.9e-14 Score=104.05 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc------CCCcc--------------------eeEEEeCC------EE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP------TLHPT--------------------SEELSMGD------IV 66 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~------t~~~~--------------------~~~~~~~~------~~ 66 (194)
++..+|..+|+-..||||+.+++.+-....... |+... .......+ +.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 688999999999999999999999864432111 11000 01111111 67
Q ss_pred EEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHH
Q psy2159 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDE 142 (194)
Q Consensus 67 ~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e 142 (194)
+.++|.|||+-.-+....-..-.|++++|++.+++..-.+.++.+..+--. .-+.++++-||+|+... ...++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 999999999977665555555679999999999988777777766655322 34678999999999762 23344
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++++++- .-..+.+++++||..+.|++-++++|.+.|+
T Consensus 165 Ik~FvkG--------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKG--------------TVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhcc--------------cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 4444432 2244578999999999999999999998773
No 280
>KOG0082|consensus
Probab=99.51 E-value=2.4e-13 Score=104.27 Aligned_cols=142 Identities=20% Similarity=0.312 Sum_probs=101.2
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.....+.+.+.++.++|.+||...+.-|.+++.+++++++|+++++ -..+.+....+..+.....+.
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 6677777889999999999999999999999999999999999999876 223555567888888899999
Q ss_pred CCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCc-------cCcccccCC--cceEEEEeccccCCChHHHHHHHhh
Q psy2159 122 DVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKE-------FTPREILQM--RPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+.++|+.+||.|+.. .....-+...+..+...+... .++.+.... +.+-...+.|.+-.+|+.+|+...+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 999999999999865 122222333333332111100 001111111 3455666799999999999998876
Q ss_pred hc
Q psy2159 192 YI 193 (194)
Q Consensus 192 ~i 193 (194)
.|
T Consensus 342 ~I 343 (354)
T KOG0082|consen 342 TI 343 (354)
T ss_pred HH
Confidence 54
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.51 E-value=1.3e-13 Score=104.35 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc------------------------------------cccCCCcceeEEEe
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------------------------------------HMPTLHPTSEELSM 62 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~ 62 (194)
+..++++..|.-.-||||||-+|+.+.-.- ..-|++..+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456799999999999999999999864221 00133333445556
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASE 140 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~ 140 (194)
..+++.+-|||||++|.+-+..-.+-||+.|+++|+... .-....+...+... ..-..+++.+||+||.+ ....
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHH--hCCcEEEEEEeeecccccCHHHH
Confidence 779999999999999998777778889999999998652 22222222222221 13467899999999977 2333
Q ss_pred HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 141 DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 141 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
+++...+.. ++...+.....++|+||..|+||-
T Consensus 160 ~~I~~dy~~----------fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLA----------FAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHH----------HHHHcCCCcceEEechhccCCccc
Confidence 444443321 122344555789999999999874
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.51 E-value=7.7e-14 Score=90.41 Aligned_cols=138 Identities=21% Similarity=0.284 Sum_probs=94.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhH----hhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW----RDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~~~~~~d~ii~v~d 97 (194)
.|++++|..|+|||||.+.+-+...-. -.| .-++++.. -.+||||.-..+..| .-...++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-kKT-----QAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-KKT-----QAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-ccc-----ceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 479999999999999999998763321 111 12223221 246999965333322 333578999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
.+++++.-.- .+..+ ..+|+|-+++|.|+.++.+.+-.+.++...+ .-++|.+|+.
T Consensus 74 and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----------------a~~IF~~s~~ 129 (148)
T COG4917 74 ANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----------------AEPIFETSAV 129 (148)
T ss_pred ccCccccCCc--ccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----------------CcceEEEecc
Confidence 9886542111 11111 3467999999999998777777777775422 3579999999
Q ss_pred cCCChHHHHHHHhh
Q psy2159 178 KRQGFGNGFRWLAN 191 (194)
Q Consensus 178 ~~~~v~~l~~~l~~ 191 (194)
++.|++++++.|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998864
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=4.3e-13 Score=113.75 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC---------------CCCc----cccCCCcceeE----EEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND---------------RTAQ----HMPTLHPTSEE----LSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~~~d~~g~ 75 (194)
.+--+|+++|+.++|||||++++... .+.. ...|+...... ++.++..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999752 1111 22233332222 3445689999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhh
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFF 147 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~ 147 (194)
.++.......++.+|++++|+|+....... ....+..... .+.|.++++||+|... ....+++...+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 998887788899999999999987743222 2233333322 4678899999999864 33444555444
No 284
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=2.4e-13 Score=99.38 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcc-----ccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhH----hhh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQH-----MPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVW----RDY 85 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 85 (194)
++|+++|..||||||++|.+++...... ..|..........++..+.++||||..+.. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998876432 235555666778899999999999954321 111 122
Q ss_pred hhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCH
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDA-LTDVPILILGNKIDIFDAASE 140 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~ 140 (194)
..+.+++++|+.... |..... .+..+.+... ..-..++|+.|..|.......
T Consensus 81 ~~g~ha~llVi~~~r---~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR---FTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB----SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCc---chHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccH
Confidence 456899999999873 433332 2222222110 012568999999997765543
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.50 E-value=2.4e-12 Score=97.56 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=81.0
Q ss_pred HHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhhH---
Q psy2159 11 VLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRVW--- 82 (194)
Q Consensus 11 ~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--- 82 (194)
.+..+. ...+.++|+++|.+|+||||++|++++.....+.+ +..+.......++..+.++||||..+.....
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~ 106 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQA 106 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHH
Confidence 444444 33578899999999999999999999876542222 2222233445678999999999977543211
Q ss_pred hhhh------hcCCEEEEEEECCCCCChHHH-HHHHHHHHhCC-CCCCCcEEEEeeCCCCCC--CCCHHHH
Q psy2159 83 RDYF------PAVDAIVFIIDASDRSRFPES-KYELDNLLADD-ALTDVPILILGNKIDIFD--AASEDEV 143 (194)
Q Consensus 83 ~~~~------~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piiiv~nK~D~~~--~~~~~e~ 143 (194)
...+ ...|+++||..++... +... ...+..+.... ..--.++|+++|+.|..+ ..+.++.
T Consensus 107 ~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~f 176 (313)
T TIGR00991 107 VNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDF 176 (313)
T ss_pred HHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHH
Confidence 1111 2589999996655432 3333 23333332221 112257899999999653 4455443
No 286
>PTZ00258 GTP-binding protein; Provisional
Probab=99.49 E-value=1.1e-12 Score=102.86 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA 78 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~ 78 (194)
...++|+++|.|+||||||+|++++.... .++.|..++.+.+..++ ..+.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56679999999999999999999887653 36667888888777653 34899999996532
Q ss_pred h----h---hHhhhhhcCCEEEEEEECC
Q psy2159 79 R----R---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 79 ~----~---~~~~~~~~~d~ii~v~d~~ 99 (194)
. . .....++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 2333467899999999984
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=1.4e-12 Score=97.13 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=76.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccch--h-h-------H
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQAR--R-V-------W 82 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--~-~-------~ 82 (194)
....+++|+++|.+|+|||||+|++++....... .|..........++..+.++||||..+.. . . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4468899999999999999999999998654322 23333444555678899999999977542 1 1 1
Q ss_pred hhhhh--cCCEEEEEEECCCCCChHHH-HHHHHHHHhCCC-CCCCcEEEEeeCCCCCC
Q psy2159 83 RDYFP--AVDAIVFIIDASDRSRFPES-KYELDNLLADDA-LTDVPILILGNKIDIFD 136 (194)
Q Consensus 83 ~~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 136 (194)
..++. ..|++++|..++... +... ...+..+..... .--.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 12232 578888887665432 2222 233333332211 11257999999999754
No 288
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.46 E-value=2.5e-12 Score=99.09 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=66.9
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+..+.++||+|....... ....+|.+++|.+........... ...++. .-++|+||.|+......+.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh------hheEEeehhcccchhHHHH
Confidence 3577899999998743322 456799999997644433333322 222222 2389999999876433333
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+....... ......-..+++.+||+++.|++++++.|.+.+
T Consensus 215 ~~~el~~~L~l~------~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 215 AAAEYRSALRLL------RPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHhcc------cccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333332211000 000001113699999999999999999998753
No 289
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.44 E-value=6.2e-12 Score=107.01 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--c----------c-------ccCCCcceeEEEe----CCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q----------H-------MPTLHPTSEELSM----GDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~----------~-------~~t~~~~~~~~~~----~~~~~~~~d~~g~ 75 (194)
.+--+|+++|+.++|||||+.+++...-. . + .-|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44457999999999999999999753211 0 0 0122222222222 3578999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.++.......++.+|++++|+|+.... .......|..... .+.|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~-~~~t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGV-MPQTETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCC-CccHHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 998887888899999999999987743 2233344444333 3567899999999763
No 290
>KOG0458|consensus
Probab=99.43 E-value=4.4e-13 Score=107.16 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC----------------------CCC--cccc----------CCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND----------------------RTA--QHMP----------TLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~----------------------~~~--~~~~----------t~~~~~~~~~~~~ 64 (194)
+.++.++++|+-.+|||||+.++... .|. .... |.......++-+.
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 47789999999999999999998864 010 0000 1111223445556
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChHHHH--HHHHHHHhCCCCCCCcEEEEeeCCCCCC--C
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFPESK--YELDNLLADDALTDVPILILGNKIDIFD--A 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~--~ 137 (194)
..+++.|.||+..|-.-...-...+|+.++|+|++..+ +|+... .....++. ...-..+||++||+|+.. .
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr--~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLR--SLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHH--HcCcceEEEEeecccccCccH
Confidence 88999999998887776666678899999999997632 233111 11111111 123567899999999977 3
Q ss_pred CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
...++++..+.... ...++ .....+.|+|||+.+|+|+...
T Consensus 333 ~RF~eIk~~l~~fL-~~~~g------f~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFL-KESCG------FKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHH-HHhcC------cccCCcceEecccccCCccccc
Confidence 44455555443211 00000 4445578999999999987543
No 291
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.42 E-value=5.7e-12 Score=91.08 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=63.0
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDE 142 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e 142 (194)
....++++.|..-.....+ .-+|.++.|+|+.+..+... ....++ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 3455667777321111111 12578999999987443211 101111 1223899999999752 34555
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.... ...+++++||++|+|++++|+++.+++
T Consensus 160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555554322 347799999999999999999998764
No 292
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.40 E-value=1.6e-11 Score=94.21 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=93.6
Q ss_pred HHHHHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCC------C-----Ccccc-C---------------CCcc--e
Q psy2159 8 FREVLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDR------T-----AQHMP-T---------------LHPT--S 57 (194)
Q Consensus 8 ~~~~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~------~-----~~~~~-t---------------~~~~--~ 57 (194)
.+..+..+.... +...+.++|++|+|||||++.+...- . ....+ + ..+. .
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI 99 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee
Confidence 445667776444 45566688999999999999877520 0 00000 0 0000 0
Q ss_pred eE--------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhC
Q psy2159 58 EE--------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD 117 (194)
Q Consensus 58 ~~--------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 117 (194)
.. .+..+..+.+.||+|..... ......+|.++++.+.. +..++......+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l--- 170 (300)
T TIGR00750 100 RSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL--- 170 (300)
T ss_pred eecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH---
Confidence 00 11235678999999864211 23466678888875432 334444333333
Q ss_pred CCCCCCcEEEEeeCCCCCCCCCHHHHHhhh----cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 118 DALTDVPILILGNKIDIFDAASEDEVRHFF----GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 118 ~~~~~~piiiv~nK~D~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.++|.++++||+|+............+ .... ........+++++||+++.|++++++++.+.
T Consensus 171 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 171 ---MEIADIYVVNKADGEGATNVTIARLMLALALEEIR----------RREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ---hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcc----------ccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 356789999999987643322212111 1111 0000111358999999999999999999874
No 293
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.39 E-value=1.9e-12 Score=96.43 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=72.9
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLT 153 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~ 153 (194)
+++..+.+.++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.... ++..+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 566777778899999999999999877 78888887765532 57999999999999653222 122233322
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....++++||++|.|++++|+.+.+.
T Consensus 96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 -------------IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 22679999999999999999988653
No 294
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=2.2e-11 Score=94.60 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=60.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc---
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA--- 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~--- 78 (194)
++++++|.|+||||||+|++++.... .+++|..++.+.+..++ ..+.+.|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999998742 36678888877777654 25899999996532
Q ss_pred -hh---hHhhhhhcCCEEEEEEECC
Q psy2159 79 -RR---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 79 -~~---~~~~~~~~~d~ii~v~d~~ 99 (194)
.. .....++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12 2333467899999999984
No 295
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.38 E-value=6.7e-12 Score=108.12 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEe----------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSM---------------- 62 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~---------------- 62 (194)
..+--+|+++|+.++|||||+++++...-. . ...|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345558999999999999999999864321 0 11122222222333
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
++..++++||||+.++.......++.+|++++|+|+.+.-.. .....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 257889999999999988888888999999999998875322 23344555443 578999999999987
No 296
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=7.2e-12 Score=107.79 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEeC----------CEEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSMG----------DIVFTTH 70 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~ 70 (194)
+--+|+++|+.++|||||++++....-. . ...|+......+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 3448999999999999999999864211 0 001122212223333 5679999
Q ss_pred EcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 71 d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
||||+.++.......++.+|++++|+|+.+.-. ......|..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-VQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-ccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999888777888899999999999887432 233344555443 468999999999986
No 297
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.4e-12 Score=96.96 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=111.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
-|+..|+-..|||||++.+.+.... ....|++..+.....++....++|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 3567799999999999999987654 2455677777777888889999999999988776677788999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|.++.- -.+..+.+.-+ .. ......++|+||+|+.++...++..+.+.... .....+++.+|+
T Consensus 82 ~~deGl-~~qtgEhL~iL-dl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~ 144 (447)
T COG3276 82 AADEGL-MAQTGEHLLIL-DL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA 144 (447)
T ss_pred eCccCc-chhhHHHHHHH-Hh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence 997632 12222222222 22 13345699999999987544444444432221 134467899999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+||++|.+.|.+..
T Consensus 145 ~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 145 KTGRGIEELKNELIDLL 161 (447)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999999998754
No 298
>KOG1144|consensus
Probab=99.36 E-value=5e-12 Score=103.65 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc--ccc---CCCccee------------------EEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMP---TLHPTSE------------------ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~---t~~~~~~------------------~~~~~~~~~~~~d~~g~ 75 (194)
.++.-|+++|+-.+|||-|+..+.+..... ... -+|.++- .+..+ .+.++||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP--g~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP--GLLVIDTPGH 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC--eeEEecCCCc
Confidence 466778899999999999999998754431 000 1111111 01111 3788899999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC------CCCH---------
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD------AASE--------- 140 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~------~~~~--------- 140 (194)
+.|..++....+.||.+|+|+|+.+.-. ......+..+.. .+.|+||.+||+|..- ..+.
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGle-pqtiESi~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLE-PQTIESINLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCC-cchhHHHHHHHh----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999999977321 122233333332 6899999999999642 1111
Q ss_pred ---HHHHhhhccc------CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 141 ---DEVRHFFGLY------GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 141 ---~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++...++.. +..+...+. ......+.+.++|+||.+|+||.+|+-+|+++
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~Lyy-kNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYY-KNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhee-ecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 1122221111 112222221 11123345679999999999999999999875
No 299
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.35 E-value=8.4e-13 Score=96.90 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=91.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC------CCC--ccccCCCc-------------------ce--eEE--------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND------RTA--QHMPTLHP-------------------TS--EEL-------- 60 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~------~~~--~~~~t~~~-------------------~~--~~~-------- 60 (194)
..+...|.+.|+||+|||||++.|... +.. ...|+... .. -.+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 447788999999999999999988753 111 12221111 10 000
Q ss_pred ------------EeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2159 61 ------------SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128 (194)
Q Consensus 61 ------------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 128 (194)
+--|+.+.++.|.|..+..- ....-+|.+++|.-+...+..+..+.-+.++.. ++|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~v 173 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFV 173 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEE
Confidence 11246677888876443222 234569999999998877777777776777632 999
Q ss_pred eeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 129 GNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 129 ~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+||+|++. +....+++..+..... ....-..+++.+||.++.|+++++++|.+.
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999654 2333445554443220 001112589999999999999999998763
No 300
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.33 E-value=1.5e-11 Score=95.72 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-----cc---ccCCCcceeEEEeCC-EEEEEEEcCCCc
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-----QH---MPTLHPTSEELSMGD-IVFTTHDLGGHV 76 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-----~~---~~t~~~~~~~~~~~~-~~~~~~d~~g~~ 76 (194)
+.++..++.++ ..+++|+|+|.+|+|||||||.+.+-.-. .+ ..|..++ .+..+. -++.+||.||..
T Consensus 22 s~i~~~l~~~~--~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 22 SKIREALKDID--NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIG 97 (376)
T ss_dssp HHHHHHHHHHH--H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GG
T ss_pred HHHHHHHHHhh--cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCC
Confidence 45566666654 56789999999999999999999864322 11 1122222 222233 269999999965
Q ss_pred cchhhH-----hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC---------CCCCCH--
Q psy2159 77 QARRVW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI---------FDAASE-- 140 (194)
Q Consensus 77 ~~~~~~-----~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~---------~~~~~~-- 140 (194)
...-.. ..-+...|.+|++.+- .|.....++...+.. .++|+++|-||+|. +.....
T Consensus 98 t~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~ 170 (376)
T PF05049_consen 98 TPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEK 170 (376)
T ss_dssp GSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHT
T ss_pred CCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHH
Confidence 322111 2224567988876542 366666555555554 58899999999995 112222
Q ss_pred --HHHHhhhcccCccCCCccCcccccCCcceEEEEecccc--CCChHHHHHHHhhhc
Q psy2159 141 --DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK--RQGFGNGFRWLANYI 193 (194)
Q Consensus 141 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~l~~~l~~~i 193 (194)
+++++.+.... ...+....++|-+|..+ ..++..|.+.|.+.+
T Consensus 171 ~L~~IR~~c~~~L----------~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 171 LLQEIRENCLENL----------QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHHHHHHHHHHHH----------HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH----------HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 22232222111 01233445688888865 456888888887655
No 301
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.32 E-value=1.2e-11 Score=92.13 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCC------CC--ccccCCCccee-----------------E----
Q psy2159 10 EVLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDR------TA--QHMPTLHPTSE-----------------E---- 59 (194)
Q Consensus 10 ~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~------~~--~~~~t~~~~~~-----------------~---- 59 (194)
..+..+- ..-+...|.+.|.||+|||||+..|...- .. ...|+...+-+ .
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 3444443 45577899999999999999999887531 11 11121111100 0
Q ss_pred --------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC
Q psy2159 60 --------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119 (194)
Q Consensus 60 --------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 119 (194)
++=-|+.+.++.|.|..+... ....-+|.+++|.-+.-.+..+.++.-+.++..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--- 192 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--- 192 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence 011235678888877554332 234468999998876666666666665655532
Q ss_pred CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 120 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 120 ~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++|+||.|... +....++...+.... .......-..+++.+||.+|+|++++++.+.+.
T Consensus 193 ------i~vINKaD~~~A~~a~r~l~~al~~~~--------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 193 ------IIVINKADRKGAEKAARELRSALDLLR--------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred ------eeeEeccChhhHHHHHHHHHHHHHhhc--------ccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 89999999654 233444444444321 000011123579999999999999999998764
No 302
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.5e-11 Score=90.11 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=107.7
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC----------CC--cccc-------CCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR----------TA--QHMP-------TLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~----------~~--~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
....+++.+|..+|+-..|||||...+...- +. ...| |+...-..++..++.+..+|+||+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence 4567899999999999999999998776421 11 1111 333333445556789999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCC-----CHHHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAA-----SEDEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-----~~~e~~~~~~~ 149 (194)
.+|-.-.....-+.|+.|+|+.+++.. ..+.++.+.-..+ -+.| +++++||+|+.++. -..|+++.+..
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 988764444455689999999988853 4555543333322 3554 56777999998732 23456667766
Q ss_pred cCccCCCccCcccccCCcceEEEEecccc-CC-------ChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLK-RQ-------GFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~-------~v~~l~~~l~~~i 193 (194)
+. ......+++.-||.. .+ .+.+|++++.+++
T Consensus 161 y~------------f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 161 YG------------FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred cC------------CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 65 555567788888743 22 3677777776655
No 303
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.32 E-value=9.6e-12 Score=98.87 Aligned_cols=135 Identities=21% Similarity=0.363 Sum_probs=94.4
Q ss_pred CCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 53 LHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 53 ~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
.|.....+.+ ++..+.++|.+|+...+.-|..++.++++++||+++++ ...+.+....+..+.......
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred CCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 3444456777 88999999999999999999999999999999999864 223566677888888887788
Q ss_pred CCcEEEEeeCCCCCC-----C---------------CCHHHHHhhhcccCccCCCccCcccccCC-cceEEEEeccccCC
Q psy2159 122 DVPILILGNKIDIFD-----A---------------ASEDEVRHFFGLYGLTTGKEFTPREILQM-RPMELFMCSVLKRQ 180 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-----~---------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 180 (194)
+.|++|++||.|+.. . ...++..+++..... ........ +.+.+..++|.+..
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~------~~~~~~~~~~~~~~h~t~a~d~~ 376 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFL------RLNRNNSPSRRIYVHFTCATDTE 376 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHH------CTHSTTTTCS-EEEEEESTTSHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHH------HhccCCCCCcceEEEEeeecccH
Confidence 999999999999643 0 122222222221110 00000111 55677899999999
Q ss_pred ChHHHHHHHhhhc
Q psy2159 181 GFGNGFRWLANYI 193 (194)
Q Consensus 181 ~v~~l~~~l~~~i 193 (194)
++..+|+.+.+.|
T Consensus 377 ~~~~v~~~v~~~i 389 (389)
T PF00503_consen 377 NIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcC
Confidence 9999999987753
No 304
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.31 E-value=3.5e-11 Score=90.61 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=58.4
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-----------------EEEEEEcCCCccc----h
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-----------------VFTTHDLGGHVQA----R 79 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~~~~d~~g~~~~----~ 79 (194)
++++|.|+||||||+|++++.+.. .++.|+.++.+.+...+. .+.++|+||.... .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999998763 367788888877777653 4999999996532 1
Q ss_pred h---hHhhhhhcCCEEEEEEECC
Q psy2159 80 R---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 80 ~---~~~~~~~~~d~ii~v~d~~ 99 (194)
. .....++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 2233467899999999874
No 305
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.31 E-value=1.6e-11 Score=89.40 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 122 DVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..|.++++||+|+.... ...++.+.++.. .+..+++++||++|.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---------------NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---------------CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999997532 234455544331 1346799999999999999999998764
No 306
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.28 E-value=4.7e-11 Score=83.90 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=55.5
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHh-CCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLA-DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.-|+|+|.+..+.... + .+... ..=++|+||.|+.+ ..+.+...+...+..
T Consensus 119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~n--------------- 173 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVN--------------- 173 (202)
T ss_pred ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------
Confidence 37888888877542221 1 11001 13389999999987 555677777776543
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+..+++.+|+++|+|++++++|+..+.
T Consensus 174 p~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 174 PEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 457899999999999999999997653
No 307
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.28 E-value=1.8e-10 Score=92.60 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred HHH-HHHHHHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC------EEEEEEEcCCC
Q psy2159 4 IWT-KFREVLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD------IVFTTHDLGGH 75 (194)
Q Consensus 4 ~~~-~~~~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~d~~g~ 75 (194)
+|+ .++++..... .......|+|+|..++|||||+.+|-+.+- +.++.+..+...+..+ ..+.+|-+.|.
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~ 83 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGD 83 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCC
Confidence 444 3344443322 335667999999999999999999876543 3344444444333321 47899999887
Q ss_pred ccchhhHhhhhhc----CCEEEEEEECCCCCChH
Q psy2159 76 VQARRVWRDYFPA----VDAIVFIIDASDRSRFP 105 (194)
Q Consensus 76 ~~~~~~~~~~~~~----~d~ii~v~d~~~~~~~~ 105 (194)
..+..+....+.. --++++|+|.+.|..+.
T Consensus 84 ~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~ 117 (472)
T PF05783_consen 84 PSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIM 117 (472)
T ss_pred cchHhHhcccCCcccccceEEEEEecCCChHHHH
Confidence 6666666554432 24788899999865433
No 308
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.26 E-value=1.4e-11 Score=82.16 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=63.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cc-cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
.+++++|..|+|||+|+.++....+.. +. +|.+ +........+.++.++.|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 479999999999999999998776642 22 3333 2222344566789999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
...++... |...++ .....+.|.++++||.|+..
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHh
Confidence 98877655 544443 33446788999999999743
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1e-10 Score=97.90 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c---cc----------------cCCCcceeEEEeCC-EEEEEEEcCCCcc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q---HM----------------PTLHPTSEELSMGD-IVFTTHDLGGHVQ 77 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~---~~----------------~t~~~~~~~~~~~~-~~~~~~d~~g~~~ 77 (194)
+--+|.++|+-++||||+..+++...-. . +. -|+......+...+ ..++++|||||-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4448899999999999999998864321 1 10 02222234566675 9999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhhcc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFFGL 149 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~ 149 (194)
+.......++-+|+++.|+|+...- ..+....|.+..+ .+.|.++++||+|... ....+++...+..
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 9999899999999999999997743 3444555666544 4799999999999865 3445566555544
No 310
>KOG0410|consensus
Probab=99.25 E-value=6.6e-11 Score=88.97 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=102.9
Q ss_pred HhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCcc---------ch
Q psy2159 14 RLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQ---------AR 79 (194)
Q Consensus 14 ~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~---------~~ 79 (194)
+.+... +..-|.++|-.+||||||++.|++.... +.+.|.+++......++ ..+.+.||.|.-. |+
T Consensus 170 r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 170 RVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred hhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 344333 4456669999999999999999965432 68889999988777754 6778889998432 22
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc----EEEEeeCCCCCCCCCHHHHHhhhcccCccCC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP----ILILGNKIDIFDAASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----iiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~ 155 (194)
+ .......+|.++-|.|+++|..-.+....+.-+ +.-..++.| ++=|-||+|..+....+| +
T Consensus 250 A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~------ 315 (410)
T KOG0410|consen 250 A-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K------ 315 (410)
T ss_pred H-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc------c------
Confidence 2 223355689999999999998444444444333 332223223 356778888765433322 0
Q ss_pred CccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 156 KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.+||++|+|++++.+.+-..
T Consensus 316 -------------n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 316 -------------NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred -------------CCccccccccCccHHHHHHHHHHH
Confidence 126889999999999999887654
No 311
>KOG0461|consensus
Probab=99.24 E-value=1.3e-10 Score=88.15 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---cccc-------CCCcceeEEEeC---------CEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMP-------TLHPTSEELSMG---------DIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~-------t~~~~~~~~~~~---------~~~~~~~d~~g~~~~~~ 80 (194)
..+++.++|+-.||||||.+++..-... ...| |.+.....+... ...+.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 4479999999999999999998864321 1111 222222222221 15679999999987766
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~ 155 (194)
.........|..++|+|+....--.. ..-.+-++ .....++|+||+|+.++ ...++....+.+-.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL---- 155 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL---- 155 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHH----
Confidence 66666777899999999866321111 11223333 33467888898887663 22333333332211
Q ss_pred CccCcccccC-CcceEEEEeccccC----CChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQ-MRPMELFMCSVLKR----QGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~Sa~~~----~~v~~l~~~l~~~i 193 (194)
++.+ ..+.+++++||+.| +++.|+.+.|-.++
T Consensus 156 ------e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 156 ------ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred ------HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 1122 23478999999999 89999999887654
No 312
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=2.7e-10 Score=87.69 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=61.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC------------------EEEEEEEcCCCcc--
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD------------------IVFTTHDLGGHVQ-- 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~------------------~~~~~~d~~g~~~-- 77 (194)
.+++.++|.|++|||||.|.++..... .++.|+.|+.+.+.... ..+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999998753 58889999977655421 3589999988553
Q ss_pred --chhh---HhhhhhcCCEEEEEEECCC
Q psy2159 78 --ARRV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 78 --~~~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
...+ +...++.+|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3333 3444688999999999863
No 313
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.23 E-value=2.7e-10 Score=85.93 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.2
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 122 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+-++++||+|+.+. ...+++.+.+... .+..+++++||++|+|++++.+||.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---------------np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---------------NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---------------CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566999999999762 2344444444332 2457899999999999999999998753
No 314
>KOG3905|consensus
Probab=99.22 E-value=2.7e-10 Score=85.85 Aligned_cols=155 Identities=20% Similarity=0.264 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC------EEEEEEEcCCCccchhhHhhhhhc---C-
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPA---V- 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~d~~g~~~~~~~~~~~~~~---~- 89 (194)
...+|+++|..|+|||||+.++-+.+...... +..+......+ .++.+|-+.|..-...+....+.. +
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs--gLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGS--GLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCC--CcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 45688899999999999999998876433333 33333333322 578899998987666665554432 2
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCC---------------------------------------------------
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADD--------------------------------------------------- 118 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 118 (194)
..+|++.|.+++...-.....|...+.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 36788899999744333332222222110
Q ss_pred ----------CCCCCcEEEEeeCCCCCC------CCC---HHH----HHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 119 ----------ALTDVPILILGNKIDIFD------AAS---EDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 119 ----------~~~~~piiiv~nK~D~~~------~~~---~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
...++|++||+||+|... +.. .+- +++++-.++ ...+.+|
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----------------aaLiyTS 271 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----------------AALIYTS 271 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----------------ceeEEee
Confidence 123489999999999733 111 111 333333333 6789999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
+|+..|++-+..+|++.+
T Consensus 272 vKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 272 VKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccccchHHHHHHHHHHh
Confidence 999999999999998753
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.22 E-value=1.2e-09 Score=85.56 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC----CCC-----------ccc-------cCCCcce---e
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND----RTA-----------QHM-------PTLHPTS---E 58 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~----~~~-----------~~~-------~t~~~~~---~ 58 (194)
-+..++++..+=+ -.+.|.++|+.++|||||+|+|.+. ... -+. .|.+|.. +
T Consensus 3 ~~~iykDIa~RT~---G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~k 79 (492)
T TIGR02836 3 KVDIYKDIAERTQ---GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNE 79 (492)
T ss_pred chhHHHHHHHHhC---CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCc
Confidence 3445566555443 4578999999999999999999987 322 111 2444433 3
Q ss_pred EEEeC---C--EEEEEEEcCCCccch--------h---------------------hHhhhhh-cCCEEEEEE-ECCC--
Q psy2159 59 ELSMG---D--IVFTTHDLGGHVQAR--------R---------------------VWRDYFP-AVDAIVFII-DASD-- 100 (194)
Q Consensus 59 ~~~~~---~--~~~~~~d~~g~~~~~--------~---------------------~~~~~~~-~~d~ii~v~-d~~~-- 100 (194)
.+++. + .++.++||+|...-. . -....+. .+|..++|. |.+-
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d 159 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD 159 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence 33332 1 689999999944211 1 0233455 788888887 6641
Q ss_pred --CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh-cccCccCCCccCcccccCCcceEEEEec--
Q psy2159 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF-GLYGLTTGKEFTPREILQMRPMELFMCS-- 175 (194)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S-- 175 (194)
.+.+......+...++. .++|+++++||+|-.... ..++.+.+ +++. .+++++|
T Consensus 160 I~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-----------------vpvl~v~c~ 218 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKE---LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-----------------VPVLAMDVE 218 (492)
T ss_pred cccccchHHHHHHHHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-----------------CceEEEEHH
Confidence 12234444333333333 689999999999943221 23333333 2222 4445544
Q ss_pred cccCCChHHHHHHHhh
Q psy2159 176 VLKRQGFGNGFRWLAN 191 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~ 191 (194)
-.+.+.+..+++.++.
T Consensus 219 ~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 219 SMRESDILSVLEEVLY 234 (492)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 4667778888877654
No 316
>KOG3886|consensus
Probab=99.19 E-value=4.7e-11 Score=85.74 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC----CCccccCCCcceeEEEeC-CEEEEEEEcCCCccchh-----hHhhhhhcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR----TAQHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAV 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-----~~~~~~~~~ 89 (194)
...|++++|.+|||||++=..++.+. ....++|++..-..+.+- +..+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 34689999999999999877777554 235666777766666554 48999999999995432 234567889
Q ss_pred CEEEEEEECCCCCChHHH---HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH
Q psy2159 90 DAIVFIIDASDRSRFPES---KYELDNLLADDALTDVPILILGNKIDIFDAASE 140 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 140 (194)
+++++|||++..+-..+. ..-+..+++ ..|...+.+..+|+|+...-..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchH
Confidence 999999999775422222 223344433 4588899999999999774333
No 317
>KOG0085|consensus
Probab=99.16 E-value=3.1e-11 Score=86.89 Aligned_cols=135 Identities=16% Similarity=0.276 Sum_probs=93.4
Q ss_pred eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC----------CCCCChHHHHHHHHHHHhCCCCCCCcEEE
Q psy2159 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA----------SDRSRFPESKYELDNLLADDALTDVPILI 127 (194)
Q Consensus 58 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~piii 127 (194)
..++.....+.+.|.+|+...++-|.+++.++-.+++++.+ ++++..++....+..++..+.+.+.++|+
T Consensus 192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIl 271 (359)
T KOG0085|consen 192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 271 (359)
T ss_pred cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEE
Confidence 34444557788999999999988888888887777776554 34667888888999999999999999999
Q ss_pred EeeCCCCCC-CCCHHHHHhhhcccCccCCCc---cCccccc-------CCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 128 LGNKIDIFD-AASEDEVRHFFGLYGLTTGKE---FTPREIL-------QMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 128 v~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+||.|+.+ .+....+...+.......+.. ..++... +...+.-..+.|.+-+|+..+|.+..+.
T Consensus 272 FLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDt 347 (359)
T KOG0085|consen 272 FLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 347 (359)
T ss_pred EechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHH
Confidence 999999876 344555555554443222211 1111111 1112334457788889999999887653
No 318
>KOG3887|consensus
Probab=99.14 E-value=4.2e-10 Score=81.56 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh---hHhhhhhcCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~ii~ 94 (194)
.+|+++|...|||||+.+.++.+..+. ...|..++...+...=..+.+||.|||-.+.. -....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 469999999999999999888775542 34455555555555457899999999886443 23456788999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccc--cCCcce
Q psy2159 95 IIDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREI--LQMRPM 169 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 169 (194)
|+|+.+. +.+....+.....+ ...+++.+-+.+.|.|-.. +...+.-+...+.-. ....+ ...-.+
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~-------d~l~d~gle~v~v 178 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTN-------DELADAGLEKVQV 178 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhh-------HHHHhhhhccceE
Confidence 9998773 44444445544443 3457788889999999544 333332222221111 00111 122234
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|+-+|-. ..++.|.|..+++++
T Consensus 179 sf~LTSIy-DHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 179 SFYLTSIY-DHSIFEAFSKVVQKL 201 (347)
T ss_pred EEEEeeec-chHHHHHHHHHHHHH
Confidence 55556554 456889998888764
No 319
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.13 E-value=8.5e-09 Score=76.32 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCC-Ccc--ccCCCcc--------------------------
Q psy2159 8 FREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQH--MPTLHPT-------------------------- 56 (194)
Q Consensus 8 ~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~--~~t~~~~-------------------------- 56 (194)
+.+....+|.. .....++++|+.|+||||+++.+.+..+ +.. ..|..+.
T Consensus 11 i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~ 90 (240)
T smart00053 11 LQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFD 90 (240)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHH
Confidence 33444466643 3566899999999999999999998742 110 0000000
Q ss_pred -----------------------eeEEEe--CC-EEEEEEEcCCCccc-------------hhhHhhhhhc-CCEEEEEE
Q psy2159 57 -----------------------SEELSM--GD-IVFTTHDLGGHVQA-------------RRVWRDYFPA-VDAIVFII 96 (194)
Q Consensus 57 -----------------------~~~~~~--~~-~~~~~~d~~g~~~~-------------~~~~~~~~~~-~d~ii~v~ 96 (194)
.-.++. ++ ..+.++|+||.... ..+...+++. .+.+++|+
T Consensus 91 ~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vv 170 (240)
T smart00053 91 EVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVT 170 (240)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEE
Confidence 001111 11 46899999997521 1234446664 45888899
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|+...-.-.........+ ...+.|+++|+||.|..+
T Consensus 171 da~~d~~~~d~l~ia~~l----d~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 171 PANVDLANSDALKLAKEV----DPQGERTIGVITKLDLMD 206 (240)
T ss_pred ECCCCCCchhHHHHHHHH----HHcCCcEEEEEECCCCCC
Confidence 876532222212222222 225789999999999876
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.6e-10 Score=86.72 Aligned_cols=124 Identities=24% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-c------------------------cccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-Q------------------------HMPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~------------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
+-...|+.+|.+|||||-..++--.-. + ..-++....-+++|.+..+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 336778999999999999987643111 0 001122234567888999999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE---DEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~ 149 (194)
+++..-.-.-+..+|..+.|+|+... .+.-...+.+ .....++|++=.+||.|.....+. +|+.+.++.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfe---VcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFE---VCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHH---HHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 99988777778889999999998773 3333322333 334489999999999997653332 344554443
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.12 E-value=8.1e-10 Score=77.73 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.7
Q ss_pred EEEEEEEcCCCcc----chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 65 IVFTTHDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 65 ~~~~~~d~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
..+.++|+||... ....+..++..+|++++|.+++...+-... ..+...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 4589999999753 235677788999999999999885544433 334444333 344589999984
No 322
>KOG0468|consensus
Probab=99.10 E-value=3.3e-10 Score=92.33 Aligned_cols=111 Identities=19% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----------C----------CCcceeEEEeC-----CEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----------T----------LHPTSEELSMG-----DIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----------t----------~~~~~~~~~~~-----~~~~~~~d~~g 74 (194)
+-.++.++|+-.+|||+|+..|.....+...+ + +..+..++-.. .+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 44467788999999999999998765432111 1 11111222221 26789999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.......++.+|++++++|+.+.-.+...+ .+...++ .+.|+++|+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh----ccCcEEEEEehhHHH
Confidence 9999988888899999999999998865444322 2333333 689999999999953
No 323
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.10 E-value=4.7e-10 Score=78.08 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=60.4
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
.+.....+++|++++|+|++++..... ..+..++.. .++|+++++||+|+.+....+++....+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---------- 68 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES---------- 68 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh----------
Confidence 456667778999999999987543322 122222222 46899999999998542111111111111
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||+++.|++++++.+.+.+
T Consensus 69 -------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 -------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred -------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 124689999999999999999998754
No 324
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.08 E-value=2.5e-09 Score=88.11 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccch-------hh---Hhhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RV---WRDYF 86 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~---~~~~~ 86 (194)
+++|+++|.+|+||||++|.+++....... .|..........++..+.++||||..... .. ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 358999999999999999999997643222 22222222334577899999999976431 11 12223
Q ss_pred h--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q psy2159 87 P--AVDAIVFIIDASDRSRFPESKYELDNLLADDAL-TDVPILILGNKIDIFD 136 (194)
Q Consensus 87 ~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~ 136 (194)
. .+|++++|..++...........+..+...... -=..+||+.|+.|..+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 3 479999998776433222333344444332110 1156799999999765
No 325
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.07 E-value=5.7e-10 Score=84.65 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc-----------cCCCcce--eEEEeCC--EEEEEEEcCCCccch---hhH
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-----------PTLHPTS--EELSMGD--IVFTTHDLGGHVQAR---RVW 82 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~---~~~ 82 (194)
.++|+|+|.+|+|||||+|.|++....... .+..... ..+..++ .++.++||||....- ..|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 468999999999999999999987553221 1111111 2233344 689999999944210 000
Q ss_pred -----------hh-------------hhhcCCEEEEEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 83 -----------RD-------------YFPAVDAIVFIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 83 -----------~~-------------~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.. .-...|+++|.++++... .... ...+..+. ...++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 00 113478999999986532 3333 34455552 3578999999999855
No 326
>PRK12289 GTPase RsgA; Reviewed
Probab=99.05 E-value=8.3e-10 Score=86.14 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred hHhhhhhcCCEEEEEEECCCCCC-hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSR-FPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
+....+.++|.+++|+|+.++.. ...+..++... .. .++|+++|+||+|+......+++.+.+....
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g-------- 149 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQQWG-------- 149 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHHhcC--------
Confidence 34445789999999999987652 33445555444 22 5799999999999965322233333333322
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+++++||+++.|++++++.+...
T Consensus 150 ---------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 150 ---------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ---------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 568999999999999999998654
No 327
>KOG1707|consensus
Probab=99.04 E-value=6.5e-09 Score=83.77 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=98.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
.++.+++.++|+.++|||.+++.+.+..+.. ...+..+. ...+...| ..+.+-|.+-. ...-+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 3567789999999999999999999987763 32333332 22233333 45555566544 222222222 579999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.++||++++.+|......+...-.. ...|+++|++|+|+.+ ...+++....++..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~----------------- 559 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP----------------- 559 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-----------------
Confidence 9999999999999988766655333 6799999999999865 34446666655442
Q ss_pred ceEEEEeccccCCChHHHHHHHhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+.+..|.+...+ .++|..|..
T Consensus 560 --~P~~~S~~~~~s-~~lf~kL~~ 580 (625)
T KOG1707|consen 560 --PPIHISSKTLSS-NELFIKLAT 580 (625)
T ss_pred --CCeeeccCCCCC-chHHHHHHH
Confidence 244555553223 777777654
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.03 E-value=1.6e-09 Score=77.85 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=63.8
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~ 156 (194)
+...+..+++.+|++++|+|++++... .. ..+ ... ..++|+++|+||+|+.+. ...+++..+.....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-~~-~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----- 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-LI-PRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA----- 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-cc-hhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-----
Confidence 567778888999999999999875421 11 111 111 146899999999998653 22333333320000
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..........++++||++|.|+++++++|.+.+
T Consensus 92 ----~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 92 ----AAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred ----HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000111123589999999999999999998754
No 329
>KOG0705|consensus
Probab=99.01 E-value=5.9e-10 Score=89.03 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=115.9
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
++...+++|+.++|..++|||+++.++..+.|.+-..+.+... +.+..++ ..+.+.|.+|... .+|...+|+
T Consensus 24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 4456789999999999999999999999998886555555543 3344443 5677778877443 556778999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+|+||.+.+..+|+.+......+..+......|+++++++.-... .+...+..... .+..
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~----------------~~~k 162 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS----------------AQMK 162 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH----------------HhcC
Confidence 999999999999999998888877666667788899988654322 22222333332 2233
Q ss_pred ceEEEEeccccCCChHHHHHHHhhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+++++|.+|.++...|+.+..+
T Consensus 163 rcsy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 163 RCSYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred ccceeecchhhhhhHHHHHHHHHHH
Confidence 3679999999999999999988764
No 330
>KOG0460|consensus
Probab=99.01 E-value=2.3e-09 Score=81.33 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=108.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcC----C------CC--cccc---CCCc--ceeEEEeC--CEEEEEEEcCCCcc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKND----R------TA--QHMP---TLHP--TSEELSMG--DIVFTTHDLGGHVQ 77 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~----~------~~--~~~~---t~~~--~~~~~~~~--~~~~~~~d~~g~~~ 77 (194)
..+++++|.-+|+-..|||||--.+..- . |. ...| ..|. +...++|. .+.+.-.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4578999999999999999998877652 1 11 0111 1222 23344443 47888999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHhhhcccCc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA-----SEDEVRHFFGLYGL 152 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-----~~~e~~~~~~~~~~ 152 (194)
|-.-.-.-...-|+.|+|+..+|.. .++.++.+.-..+. .-..+++.+||.|+.++. ..-|+++.+..++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g- 204 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG- 204 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC-
Confidence 8764444456689999999998864 66766655555443 235678889999998532 2345666666666
Q ss_pred cCCCccCcccccCCcceEEEEeccc---cCC-------ChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVL---KRQ-------GFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~-------~v~~l~~~l~~~i 193 (194)
......+++.-||. +|. .|.+|++++-.+|
T Consensus 205 -----------f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 205 -----------FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred -----------CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 66677888887764 442 3666666665544
No 331
>PRK00098 GTPase RsgA; Reviewed
Probab=98.97 E-value=1.9e-09 Score=82.76 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=60.6
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+.++|.+++|+|+.++.........+...+.. .++|+++|+||+|+.+. ....++...++..
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~------------- 140 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYRAI------------- 140 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-------------
Confidence 458899999999998887665553333333333 57899999999999632 1112223333221
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+++++||+++.|++++++.+..
T Consensus 141 ----g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 141 ----GYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ----CCeEEEEeCCCCccHHHHHhhccC
Confidence 257999999999999999998754
No 332
>KOG1486|consensus
Probab=98.97 E-value=1.9e-08 Score=73.56 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh-------hHhhhhhcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVD 90 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~d 90 (194)
..+++++|.|.+|||||+..++.-... ..+.|...-.+.+.+++..+++.|.||--+..+ ..-...+-+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 348999999999999999999865432 455566666789999999999999999543221 1222456789
Q ss_pred EEEEEEECCCCC
Q psy2159 91 AIVFIIDASDRS 102 (194)
Q Consensus 91 ~ii~v~d~~~~~ 102 (194)
.+++|.|++..+
T Consensus 142 lilMvLDatk~e 153 (364)
T KOG1486|consen 142 LILMVLDATKSE 153 (364)
T ss_pred EEEEEecCCcch
Confidence 999999997744
No 333
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=9.7e-09 Score=82.82 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
++++-+.++||||+|||||++.+......++...+...+..+....+.+++..+| ....++ ....+.+|.+++++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~m-iDvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQM-IDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHH-HhHHHhhheeEEEecc
Confidence 4566666999999999999999987644444444444444555556899999999 334443 3447789999999998
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC-CCHHHHHhhhcc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDA-ASEDEVRHFFGL 149 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-~~~~e~~~~~~~ 149 (194)
+- .|+...-.+..++.. ++.| ++-|+|+.|+... ....++++.++.
T Consensus 144 nf--GfEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 144 NF--GFEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred cc--CceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhh
Confidence 76 455444444455554 3444 5677899999873 344455554433
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=4.6e-09 Score=80.20 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=63.6
Q ss_pred hhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 83 RDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.............
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~------------ 136 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALA------------ 136 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHh------------
Confidence 44578899999999999887 67777776665533 47899999999999654111111111211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+++++||+++.|++++++.+..
T Consensus 137 -----~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 -----LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----CCCeEEEEECCCCccHHHHHhhhcc
Confidence 2267899999999999999998764
No 335
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.3e-08 Score=79.51 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=64.7
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
..++|.+++|++.....++..+..|+... .. .++|+++|+||+|+.+....+.+....+.+ .
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y--------------~ 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIY--------------R 179 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHHH--------------H
Confidence 46799999999998877888888777644 22 578999999999997643222333332221 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....+++++||+++.|+++++++|...
T Consensus 180 ~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112689999999999999999998764
No 336
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.4e-08 Score=70.80 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC-CEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG-DIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g 74 (194)
...+++++|.||+|||||+|++.+.....+.++.+.+.....+. +..+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 46788899999999999999999887766666655554332222 23578999998
No 337
>KOG0099|consensus
Probab=98.84 E-value=2.1e-08 Score=73.72 Aligned_cols=83 Identities=23% Similarity=0.474 Sum_probs=59.7
Q ss_pred CcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC-------CC---ChHHHHHHHHHHHhCCCCCCC
Q psy2159 54 HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------RS---RFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 54 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~---~~~~~~~~~~~~~~~~~~~~~ 123 (194)
|.....+..+..++.++|.+||...++-|.+.+.++-++++|+..+. .. .+.+....+..+-.......+
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 33344566677889999999999999999999999999999998764 11 122222333333333445678
Q ss_pred cEEEEeeCCCCCC
Q psy2159 124 PILILGNKIDIFD 136 (194)
Q Consensus 124 piiiv~nK~D~~~ 136 (194)
.+|+.+||.|+..
T Consensus 271 svIlFLNKqDlla 283 (379)
T KOG0099|consen 271 SVILFLNKQDLLA 283 (379)
T ss_pred heeEEecHHHHHH
Confidence 8999999999754
No 338
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.83 E-value=2e-08 Score=70.01 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=57.4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+.++|++++|+|+.++... ....+...+.. ...++|+++|+||+|+.+. +++..++..+. .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~------------~ 66 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPT---WVTARWVKILS------------K 66 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHh-ccCCCCEEEEEEchhcCCH---HHHHHHHHHHh------------c
Confidence 36789999999999886322 11223333332 1246899999999999643 23333332221 0
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
... ...+++||+.+.|++++++++.+.
T Consensus 67 ~~~-~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 67 EYP-TIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred CCc-EEEEEeeccccccHHHHHHHHHHH
Confidence 111 236889999999999999998764
No 339
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.82 E-value=3.7e-08 Score=76.04 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=100.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-c----------------ccCCCcceeEEEe------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-H----------------MPTLHPTSEELSM------------------ 62 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~----------------~~t~~~~~~~~~~------------------ 62 (194)
.+.+..+.++|+-+.|||||+-+|....... . .-|-+.....+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4677788899999999999999888764431 0 0011111111111
Q ss_pred -----CCEEEEEEEcCCCccchhhHhh--hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 63 -----GDIVFTTHDLGGHVQARRVWRD--YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 63 -----~~~~~~~~d~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.+.-+.+.|+.|++.+-+.... +-+..|-.++++.+++..+.. .++.+--. .. -+.|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~-~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIA-LA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhh-hh---hcCCEEEEEEecccC
Confidence 1245899999999987653322 335689999999888743222 22222222 21 578999999999998
Q ss_pred CCCCH----HHHHhhhcccCccCCCc---cCc---ccc--cCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 136 DAASE----DEVRHFFGLYGLTTGKE---FTP---REI--LQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 136 ~~~~~----~e~~~~~~~~~~~~~~~---~~~---~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
++... +++...++...+....- ... +.. .+....|+|.+|+.+|+|.+-|.+-+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 74433 34444443322111100 011 111 222357999999999999887665543
No 340
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.81 E-value=1.3e-08 Score=71.84 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~ 75 (194)
....+++++|.|++|||||+|++.+.....+.+..|.+.. .+..+ ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 4558999999999999999999999877665555555542 22333 46889999983
No 341
>KOG0466|consensus
Probab=98.81 E-value=5e-09 Score=78.53 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcc------ccCCCc-----------------------------ceeEEEeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQH------MPTLHP-----------------------------TSEELSMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~------~~t~~~-----------------------------~~~~~~~~~ 64 (194)
-.++|.-+|+-..||||+++.+.+-..... .-|+.. +.-..+..+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 346888999999999999998877522110 001000 000111111
Q ss_pred --------EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 --------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+.+.++|+||++-.-+....-..-.|++++++..++...-.+..+.+..+-.. .=+.++++-||+|+..
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIK 193 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhh
Confidence 46899999999976665555455568888888877755555554444433211 2357899999999977
Q ss_pred CCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 137 AAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 137 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+.. .++..+..+... ..-....+++++||.-+.|++-+.++|+++++
T Consensus 194 e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 322 222222222221 12334478999999999999999999998873
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.79 E-value=2.1e-08 Score=70.93 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
......+..+|.+++|+|++++...... . +...+ .++|+++++||+|+.+.....+..+.++.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~---------- 73 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES---------- 73 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh----------
Confidence 3445567889999999999875432221 1 22221 35799999999998643111122222221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....++.+||+++.|++++.+.+.+.
T Consensus 74 -------~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 -------KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 11457899999999999999998775
No 343
>KOG0459|consensus
Probab=98.78 E-value=3.7e-09 Score=81.78 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC------------------------CC----------ccccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR------------------------TA----------QHMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~------------------------~~----------~~~~t~~~~~~~~~~~~ 64 (194)
+.+.+++++|+-.+||||+-..+.... .+ +...|++.....++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 578899999999999999877655420 00 11224445556677777
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC---CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----C
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----A 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~ 137 (194)
..+++.|.||+..+....-.-..++|..++|+++.- +..|+.--+.-..........-...|+++||+|-+. .
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 899999999999887766666788999999998743 222332211111111111224578899999999765 2
Q ss_pred CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 138 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
...+|+...+..... ...........|++||..+|.++.+..+
T Consensus 237 eRy~E~~~k~~~fLr-------~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLR-------KLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHH-------HhcccCCCCceeeecccccccchhhccc
Confidence 233444444433220 0111233456799999999999887543
No 344
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.78 E-value=7e-08 Score=75.37 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=62.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC-C---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccch-
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT-A---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~-~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~- 79 (194)
+++.++|.|++|||||.+.+++... . .++.|..++.+.+..++ ..+.+.|.||.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999876 3 36668889888777655 368999999976421
Q ss_pred ------hhHhhhhhcCCEEEEEEECCC
Q psy2159 80 ------RVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 80 ------~~~~~~~~~~d~ii~v~d~~~ 100 (194)
......++.+|+++.|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 234556789999999999853
No 345
>KOG1954|consensus
Probab=98.77 E-value=1.2e-07 Score=73.01 Aligned_cols=123 Identities=22% Similarity=0.260 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC--c--cccCCCcceeEE---------------E----e---------------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA--Q--HMPTLHPTSEEL---------------S----M--------------- 62 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~--~--~~~t~~~~~~~~---------------~----~--------------- 62 (194)
..=|+++|+-..||||+|+.++...++ . ..||.+.....+ + +
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 345788999999999999999999887 2 233322211111 0 0
Q ss_pred ----CC---EEEEEEEcCCCcc-----------chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc
Q psy2159 63 ----GD---IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP 124 (194)
Q Consensus 63 ----~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (194)
.+ .+++++||||--+ +.....=+...+|.|+++||+.-.+--++....+..+.. +.-.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Edk 213 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDK 213 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccce
Confidence 01 3599999999443 223344467889999999999877666666666666643 4557
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 125 ILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 125 iiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
+-||+||.|..+ .+++...+...
T Consensus 214 iRVVLNKADqVd---tqqLmRVyGAL 236 (532)
T KOG1954|consen 214 IRVVLNKADQVD---TQQLMRVYGAL 236 (532)
T ss_pred eEEEeccccccC---HHHHHHHHHHH
Confidence 889999999855 45555554443
No 346
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.77 E-value=6.2e-08 Score=67.39 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=43.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee-EEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE-ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+++||||++|++.+.....+.++.+.+.. .+...+..+.+|||||.
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 34567899999999999999999998766666777766542 11112347899999993
No 347
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.77 E-value=2.5e-08 Score=68.20 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=39.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc--eeEEEeCCEEEEEEEcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT--SEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~ 75 (194)
.+++++|.+|+||||++|++.+........+.+.+ ...+..++ .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 38899999999999999999988765443333333 33444444 6799999995
No 348
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=4.5e-08 Score=68.05 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=54.0
Q ss_pred CEEEEEEECCCCCChHHHHHHHH-HHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELD-NLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
|.+++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+.+. +++..++..+. ....
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~-------------~~~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR-------------HSYP 59 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH-------------hhCC
Confidence 789999999887654432 232 23222 57899999999998542 33333221110 0112
Q ss_pred eEEEEeccccCCChHHHHHHHhhh
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++.+||+++.|++++.+.+.+.
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHHH
Confidence 568999999999999999988653
No 349
>KOG1143|consensus
Probab=98.75 E-value=4.8e-08 Score=75.24 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-----------------ccc-------CCCcce--eEEEe-----------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----------------HMP-------TLHPTS--EELSM----------- 62 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-----------------~~~-------t~~~~~--~~~~~----------- 62 (194)
-+.++.++|...+|||||+-.+..+.... ... +.|++. +.++|
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 45789999999999999999888764321 111 222221 11222
Q ss_pred -CCEEEEEEEcCCCccchhhHhhhhhc--CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 63 -GDIVFTTHDLGGHVQARRVWRDYFPA--VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 63 -~~~~~~~~d~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
...-++++|.+|+.+|....-..+.+ .|...+|++++....+.. ++.+--++- .+.|++++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 22468999999999887654443332 578888888766433222 222222221 4789999999999987554
Q ss_pred HHHHHhhhcccCccCCCccCc-------------ccccCCcceEEEEeccccCCChHHHHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTP-------------REILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.+...+.+.....+..+...+ ...+.....++|.+|+.+|+|++-+-.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 444433332222222222111 122344567899999999999876543
No 350
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=2.7e-08 Score=78.29 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=66.2
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCcc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT 153 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~ 153 (194)
.+++......+...++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.+ ....+++.+++....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-- 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-- 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH--
Confidence 44677778888888999999999977431 1111222221 3679999999999865 344555555542211
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+..+.....++.+||++|.|++++++.+.+
T Consensus 121 --------k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 121 --------KELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred --------HHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 001111125899999999999999999865
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=4.3e-08 Score=74.53 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC
Q psy2159 73 GGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG 151 (194)
Q Consensus 73 ~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~ 151 (194)
|||- .........+..+|++++|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+++.+.++..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~- 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK- 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-
Confidence 5543 223344556788999999999987654332 2233332 257999999999985421122222223211
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...++.+||+++.|++++.+.+.+.+
T Consensus 77 ----------------~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 77 ----------------GIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ----------------CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 14689999999999999998887643
No 352
>KOG1491|consensus
Probab=98.73 E-value=7e-08 Score=73.37 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=65.7
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGG 74 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g 74 (194)
++...+++++.++|.|++||||+.|.+++.... .++.|++++...+.... ..++++|.+|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 344457889999999999999999999998765 47779999877765532 4699999998
Q ss_pred Cccc----hhh---HhhhhhcCCEEEEEEECCC
Q psy2159 75 HVQA----RRV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 75 ~~~~----~~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
.... ..+ +...++.+|+++-|+++.+
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 6542 222 3445678999999998754
No 353
>KOG2486|consensus
Probab=98.72 E-value=7.3e-08 Score=71.43 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccc-cCCCcceeE-EEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHM-PTLHPTSEE-LSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~-~t~~~~~~~-~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
..+.++++.|.+++|||+|+|.+...+.. ... ++.+.+... ...-+..+.++|.||..+ .......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 45689999999999999999999987654 222 244444322 222346889999999332 12233333
Q ss_pred hhc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhhhcccCccCCC
Q psy2159 86 FPA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS------EDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 86 ~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------~~e~~~~~~~~~~~~~~ 156 (194)
+.. --.+.+++|++-+ ++....-..+++.+ .+.|+.+|.||||...... ...+...+....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~----- 283 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI----- 283 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc-----
Confidence 322 2345556676552 33333333444444 6899999999999765211 111111111111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
........+.+.+|+.++.|+++|.-.+.+
T Consensus 284 -----~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 -----RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred -----ccceeccCCceeeecccccCceeeeeehhh
Confidence 011112234667999999999988655543
No 354
>KOG1487|consensus
Probab=98.72 E-value=5.8e-08 Score=71.32 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=95.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--cc-ccCCCcceeEEEeCCEEEEEEEcCCCccch----h---hHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--QH-MPTLHPTSEELSMGDIVFTTHDLGGHVQAR----R---VWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~---~~~~~~~~~d~i 92 (194)
++.++|.|.+||||++..+.+...+ .+ +.|.-...+.+.+.+-++++.|.||--+.. . ......+-|+++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli 140 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLI 140 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEE
Confidence 8899999999999999999986433 22 223333346677888999999999854321 1 122335678999
Q ss_pred EEEEECCCCCChHHHHH-----------------------------------------HHHHHHhCC-------------
Q psy2159 93 VFIIDASDRSRFPESKY-----------------------------------------ELDNLLADD------------- 118 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~-----------------------------------------~~~~~~~~~------------- 118 (194)
++|.|+..|-+...+.+ .+.++..+.
T Consensus 141 ~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd 220 (358)
T KOG1487|consen 141 FIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADD 220 (358)
T ss_pred EEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhh
Confidence 99999865433322221 111111110
Q ss_pred -----CC--CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 119 -----AL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 119 -----~~--~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.. .-.|.+.+.||+|... .+|+.-.. +....+++||.++=|++++++.+-+
T Consensus 221 LIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~-------------------~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 221 LIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIY-------------------TIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred hhhhhccCceeeeeeeeecccceee---eeccceee-------------------eccceeecccccccchHHHHHHHhh
Confidence 11 1367788888888532 33332222 3366899999999999999998876
Q ss_pred hc
Q psy2159 192 YI 193 (194)
Q Consensus 192 ~i 193 (194)
.+
T Consensus 279 yL 280 (358)
T KOG1487|consen 279 YL 280 (358)
T ss_pred cc
Confidence 54
No 355
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.71 E-value=5.4e-08 Score=66.57 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=50.2
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
...+..+|++++|+|+.++.+... ..+..++.... .++|+++++||+|+.+.....++.+.++...
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~----------- 71 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG----------- 71 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC-----------
Confidence 445788999999999988764432 22333333211 5789999999999865322233334343222
Q ss_pred ccCCcceEEEEeccccCCC
Q psy2159 163 ILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~ 181 (194)
..++++||+++.+
T Consensus 72 ------~~ii~iSa~~~~~ 84 (141)
T cd01857 72 ------IVVVFFSALKENA 84 (141)
T ss_pred ------CeEEEEEecCCCc
Confidence 5688999987763
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.66 E-value=7.6e-08 Score=73.59 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=43.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
..+.++++++|.|++||||++|++.+.+...+.++.+.+.. .+..+ ..+.++||||..
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 34668999999999999999999999877655555555433 23333 468899999964
No 357
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.66 E-value=2.8e-07 Score=70.92 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-----------cccCCCcceeEE--EeCC--EEEEEEEcCCCccc---hh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----------HMPTLHPTSEEL--SMGD--IVFTTHDLGGHVQA---RR 80 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~---~~ 80 (194)
--.+.|+++|+.|+|||||+|.|++..... ..+|+....... .-++ ..+++.||||-.+. ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 356799999999999999999999874321 112222222222 2334 68999999995431 11
Q ss_pred hH-----------hhh--------------hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 81 VW-----------RDY--------------FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 81 ~~-----------~~~--------------~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
.| ..+ -..+++++|.+.++.-. ...+. .....+. ...-+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 11 111 13478889988765532 33332 3344443 34568889999998
Q ss_pred CCCCCHHHHHh
Q psy2159 135 FDAASEDEVRH 145 (194)
Q Consensus 135 ~~~~~~~e~~~ 145 (194)
....+..+.++
T Consensus 175 lT~~El~~~K~ 185 (373)
T COG5019 175 LTDDELAEFKE 185 (373)
T ss_pred CCHHHHHHHHH
Confidence 66444444333
No 358
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=8.4e-08 Score=72.96 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~ 75 (194)
.+..+++++|.||+|||||+|++.+.....+.+..+.+. ..+..+ ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 467899999999999999999999877654444444332 233443 36799999997
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.63 E-value=1.8e-06 Score=59.25 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..++|++.|+||+||||++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4568999999999999999998874
No 360
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=1.3e-07 Score=72.31 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=62.7
Q ss_pred cCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 72 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 72 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
.|||- .........+..+|++++|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+++.+.++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~ 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc
Confidence 45554 222334555788999999999987654332 2233332 268999999999985431122233333211
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...++.+||+++.|++++.+.+.+.
T Consensus 80 -----------------~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 80 -----------------GIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1467899999999999999988764
No 361
>KOG2655|consensus
Probab=98.61 E-value=2.9e-07 Score=71.25 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----------cccCCCcceeE--EEeCC--EEEEEEEcCCCccch------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------HMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQAR------ 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~------ 79 (194)
-.+.++++|++|.|||||+|.|+...... ...|+...... ++-+| .++++.||||..+.-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 34789999999999999999999875431 11122333333 33344 688999999954311
Q ss_pred --------hhHhhh-----------h--hcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 80 --------RVWRDY-----------F--PAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 80 --------~~~~~~-----------~--~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+....+ + ..+++.+|.+.++.-. +.... .....+. ....+|-|+-|+|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 111111 1 2578899988875532 33332 2333332 45778899999997653
Q ss_pred CCH
Q psy2159 138 ASE 140 (194)
Q Consensus 138 ~~~ 140 (194)
...
T Consensus 174 ~El 176 (366)
T KOG2655|consen 174 DEL 176 (366)
T ss_pred HHH
Confidence 333
No 362
>KOG0447|consensus
Probab=98.61 E-value=2.3e-06 Score=69.27 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=89.6
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-c-------ccc-----------------------------------
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q-------HMP----------------------------------- 51 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~-------~~~----------------------------------- 51 (194)
......-.+++|+|...+||||.+..+.....- . ..|
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 334456779999999999999999988865321 0 000
Q ss_pred --------------CCCcceeEEEe--CC-EEEEEEEcCCCc-------------cchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 52 --------------TLHPTSEELSM--GD-IVFTTHDLGGHV-------------QARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 52 --------------t~~~~~~~~~~--~~-~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
|+.+..-.++. +| ....++|.||.- ...++...+.++.+++|+|+- .
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---D 458 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---D 458 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---c
Confidence 11111111122 23 467788999932 234556677889999999983 1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcc
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGL 149 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~ 149 (194)
.|.+..+....++..+....+...|+|+||.|+.+ -.+++.+++.++-
T Consensus 459 GSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 459 GSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred CCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 24566666777788888888999999999999977 3567788887753
No 363
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.61 E-value=1e-07 Score=73.90 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=47.5
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC-CEEEEEEEcCCCc
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG-DIVFTTHDLGGHV 76 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~ 76 (194)
..++..+..+++++|-|++||||+||+|.+.....+.+..|.|...-.+. +..+.++||||--
T Consensus 125 ~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 125 KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 33345667899999999999999999999998877777667765433322 1348999999954
No 364
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=1.4e-07 Score=67.74 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--------ccccCCCccee--EEEeCCEEEEEEEcCCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--------QHMPTLHPTSE--ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~~~d~~g~ 75 (194)
+..+++++|.+|+|||||+|++.+.... ...+..+.+.. .+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 5578999999999999999999985431 11222223322 222232 5799999993
No 365
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.58 E-value=1.5e-07 Score=66.58 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+++||||++|++.+..+..+.++.+.+. ..+.++ ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3455789999999999999999999877654333333322 223333 56889999994
No 366
>KOG0465|consensus
Probab=98.58 E-value=2.7e-07 Score=75.05 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-c--------------------cccCCCcceeEEEeCCEEEEEEEcCCCccch
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~--------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 79 (194)
--+|.+..+-.+||||+-++.....-- . ..-|+......+.....+++++||||+-++.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 347888899999999999987764211 0 0001111223344556899999999999988
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
-.....++-.|+.|+|+|....- ..+....|.+... -+.|-+..+||+|....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcCC
Confidence 77777788899999998876532 3444555666644 37899999999997653
No 367
>KOG1547|consensus
Probab=98.56 E-value=6.3e-07 Score=65.30 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCCC----------cceeEEEeCC--EEEEEEEcCCCccc---hhhH
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTLH----------PTSEELSMGD--IVFTTHDLGGHVQA---RRVW 82 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~~----------~~~~~~~~~~--~~~~~~d~~g~~~~---~~~~ 82 (194)
=.++|+++|.+|.||||++|+++...... ..++.+ .....++.++ .++++.||||..+. ..+|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46899999999999999999998765432 111111 1123445566 57899999995431 1111
Q ss_pred -----------hhh------------h--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 83 -----------RDY------------F--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 83 -----------~~~------------~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
.+| + ..+++++|.+..+.-+--.-..+.+..+.+ -.-++-|+-|.|-..-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 111 1 246788888877653211222233334422 2456788899996553
Q ss_pred CCHHHHHhhh
Q psy2159 138 ASEDEVRHFF 147 (194)
Q Consensus 138 ~~~~e~~~~~ 147 (194)
.+..+.++.+
T Consensus 200 eEr~~FkqrI 209 (336)
T KOG1547|consen 200 EERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 368
>KOG1534|consensus
Probab=98.54 E-value=1.2e-07 Score=67.66 Aligned_cols=127 Identities=11% Similarity=0.097 Sum_probs=71.8
Q ss_pred EEEEEEEcCCCccchh---hHhhh---hhc---CCEEEEEEECCC-CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 65 IVFTTHDLGGHVQARR---VWRDY---FPA---VDAIVFIIDASD-RSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~---~~~~~---~~~---~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
-.+.++|+|||-+... ..+++ ++. --+++|++|..- .++...+..-+..+.. ...-..|-|=|++|+|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA-Mi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA-MISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHH
Confidence 4689999999987542 22222 222 246788887643 1122222222222211 11246889999999999
Q ss_pred CCCCCHHHHHhhhcccCccCC------Cc-cCcccc--------cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 135 FDAASEDEVRHFFGLYGLTTG------KE-FTPREI--------LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~~~e~~~~~~~~~~~~~------~~-~~~~~~--------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..+...++++.++..-...-. ++ .++.+- ....-+.|++....+.++|+-++..|-..
T Consensus 177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 988777788777755321111 00 011000 01123578888888888888887776543
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=2.5e-07 Score=64.29 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=39.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+|+||||++|++.+...... ..|..... +..+ ..+.++||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence 35678899999999999999999998764332 22333322 2332 46899999983
No 370
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.52 E-value=6.9e-07 Score=65.86 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCC----ccccCCCcceeEEEe---CCEEEEEEEcCCCccchh------hHh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTA----QHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARR------VWR 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~----~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~ 83 (194)
.+-.-|.|+|++++|||+|+|++.+. .+. ....|.|.-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 44556678899999999999999998 554 123345554433333 357899999999764322 112
Q ss_pred hhhh--cCCEEEEEEECCCCC
Q psy2159 84 DYFP--AVDAIVFIIDASDRS 102 (194)
Q Consensus 84 ~~~~--~~d~ii~v~d~~~~~ 102 (194)
..+. -++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 2233 378999988876533
No 371
>KOG0464|consensus
Probab=98.44 E-value=1e-07 Score=74.51 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=85.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-----c--ccc--------------CCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-----Q--HMP--------------TLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-----~--~~~--------------t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|.++.+-.+||||...++....-. . -.. |+.....+++..|.++.++||||+.+++-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 7889999999999999998764321 0 011 222223456667899999999999999988
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhh
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFF 147 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~ 147 (194)
...+++-.|+++.|||.+-.- -.+....|.+. ...++|-+..+||+|+.. +...+.+++.+
T Consensus 119 verclrvldgavav~dasagv-e~qtltvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGV-EAQTLTVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCc-ccceeeeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 888899999999999987643 22223344444 236899999999999866 33344444444
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.41 E-value=3.4e-06 Score=75.79 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=66.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCcc-----ccC--CCcceeEEEe-CCEEEEEEEcCCCc--------cchhhHhhhh-
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQH-----MPT--LHPTSEELSM-GDIVFTTHDLGGHV--------QARRVWRDYF- 86 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~~~d~~g~~--------~~~~~~~~~~- 86 (194)
.+++|++|+||||+++.- +..++-. ..+ ++.+. .++. =...-.++|++|.- .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 568899999999999987 3444311 111 12121 1110 11244688999822 2234455544
Q ss_pred --------hcCCEEEEEEECCCCCC--h-------HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 87 --------PAVDAIVFIIDASDRSR--F-------PESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 87 --------~~~d~ii~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+++|+++|+.+.-. - ..++.++.++... .....|+.|++||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 34799999999876321 1 2334455555433 335799999999999876
No 373
>KOG0448|consensus
Probab=98.36 E-value=1.5e-05 Score=66.05 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=72.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--cccc----------CCCcc-----------------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMP----------TLHPT----------------------------- 56 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~----------t~~~~----------------------------- 56 (194)
...+.||++.|...+||||++|++...+.- ...+ +.|..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 478899999999999999999999987542 1111 11110
Q ss_pred -----eeEEEeCC-------EEEEEEEcCCCc---cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCC
Q psy2159 57 -----SEELSMGD-------IVFTTHDLGGHV---QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 57 -----~~~~~~~~-------~~~~~~d~~g~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 121 (194)
...+-.+. -.+.+.|.||.. +..+....+..++|++|+|.++.+ .+......+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc---c
Confidence 00111111 247788999966 345566777889999999998766 455554443333332 2
Q ss_pred CCcEEEEeeCCCCCC
Q psy2159 122 DVPILILGNKIDIFD 136 (194)
Q Consensus 122 ~~piiiv~nK~D~~~ 136 (194)
+..++|+.||-|...
T Consensus 261 KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 261 KPNIFILNNKWDASA 275 (749)
T ss_pred CCcEEEEechhhhhc
Confidence 445556667879765
No 374
>KOG0467|consensus
Probab=98.36 E-value=9.3e-07 Score=73.60 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=74.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------ccc------CCCccee--EEEe--CCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------HMP------TLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------~~~------t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++.++.+-..|||||+..|...... + ... |.|.+.+ .+.+ .++.+.++|+|||-++.+...
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 6778899999999999998865431 1 101 2233322 2223 568899999999999999888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
...+-+|++++++|+.+.-- .+....+.+.. ..+...++|+||+|.
T Consensus 91 sas~l~d~alvlvdvvegv~-~qt~~vlrq~~----~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVC-SQTYAVLRQAW----IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeeccccc-hhHHHHHHHHH----HccCceEEEEehhhh
Confidence 88889999999999876432 22222232221 246678999999994
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=1.5e-06 Score=60.61 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++++|+.|+||||+++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999998865
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.35 E-value=3.1e-06 Score=66.85 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=59.6
Q ss_pred cchhhHhhhhhcCC-EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccC
Q psy2159 77 QARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTT 154 (194)
Q Consensus 77 ~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~ 154 (194)
.+...... +...+ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+ ....+++.+++....
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~--- 126 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA--- 126 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH---
Confidence 34444444 34444 899999998733 11122233322 3679999999999965 333445554433211
Q ss_pred CCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.....++.+||+++.|++++++.+.+.
T Consensus 127 -------k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 -------KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -------HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011122358999999999999999998654
No 377
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.33 E-value=2.3e-05 Score=61.92 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 2 FEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
|+-+..++++..+=+ -.+-+.|+||-.+|||||+++|...
T Consensus 1 Me~~~iykDIa~RT~---GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 1 MENFDIYKDIAERTG---GDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred CcchhHHHHHHHhcC---CceEEEeecCcccCchhHHHHHHHH
Confidence 344556666666554 3467899999999999999999864
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.32 E-value=2.8e-07 Score=63.89 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=32.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCc------ceeEEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHP------TSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~------~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..++++|++|||||||+|.|.+.....+.. ..+. ...-+.+++ ...+.||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCc
Confidence 577788999999999999999874322111 1000 122333322 347789999654
No 379
>PRK12288 GTPase RsgA; Reviewed
Probab=98.30 E-value=9.8e-07 Score=69.04 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=34.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCccc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
-++++|.+|+|||||+|+|.+.....+....+ .+ ..-+.+++ ...++||||-.++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 36789999999999999999875443222111 11 11223322 1248999997654
No 380
>KOG0463|consensus
Probab=98.29 E-value=5.4e-06 Score=64.30 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-------------------cccCCCcce----------------------e
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------------------HMPTLHPTS----------------------E 58 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-------------------~~~t~~~~~----------------------~ 58 (194)
-+.++.++|.-.+|||||+-.+...+... ...+++-++ .
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 45699999999999999998777653320 011111111 1
Q ss_pred EEEe-CCEEEEEEEcCCCccchhh--HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 59 ELSM-GDIVFTTHDLGGHVQARRV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 59 ~~~~-~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.+-. ...-++++|..|++.|-.. +.+--+-.|.-.+.+-++-.- .-...+.+.-.+. ...|+++|++|+|..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 1111 1245889999999987653 222223456666666543311 2222222222222 468999999999998
Q ss_pred CCCCHHHHHhhhcccCccCCCccCccc------------cc-CCcceEEEEeccccCCChHHHHHH
Q psy2159 136 DAASEDEVRHFFGLYGLTTGKEFTPRE------------IL-QMRPMELFMCSVLKRQGFGNGFRW 188 (194)
Q Consensus 136 ~~~~~~e~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 188 (194)
+..-.+|-.+.+..+.....+++.... +. ..+..++|.+|-.+|.|++-+.-.
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 876666655555444433333332211 11 334568999999999998766443
No 381
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.28 E-value=8.9e-06 Score=62.93 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCc-------cccCCCcc---------eeEEEe------------------------C
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTLHPT---------SEELSM------------------------G 63 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~~~~---------~~~~~~------------------------~ 63 (194)
.++.|.-||||||+++++....... -+..++.+ ....++ +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 3455999999999999999764321 11111111 111111 1
Q ss_pred CEEEEEEEcCCCccchhhHhhhh--------hcCCEEEEEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
+....++.+.|...-......+. -..|+++.|+|+.+-..... ......+-+.. . =+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---A---D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---A---DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---C---cEEEEecccC
Confidence 13355666766544322222221 13588999999987322111 22222222221 2 2999999999
Q ss_pred CCCCCHHHHHhhhcccC
Q psy2159 135 FDAASEDEVRHFFGLYG 151 (194)
Q Consensus 135 ~~~~~~~e~~~~~~~~~ 151 (194)
..+...+.++..+..+.
T Consensus 158 v~~~~l~~l~~~l~~ln 174 (323)
T COG0523 158 VDAEELEALEARLRKLN 174 (323)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88655667777776544
No 382
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.26 E-value=2.2e-06 Score=67.60 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-----CccccCCCcceeEEEeC-CEEEEEEEcCCCccchhhHhhh---------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-----AQHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDY--------- 85 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~--------- 85 (194)
..++.++|.+|+|||||+|++.+... ....+..+.+.....+. +..+.++||||......+....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 35899999999999999999998542 12233333333322222 1346799999976543321111
Q ss_pred -hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 -FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 -~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
-+......+.++....-.+..+. ++ +++. ..+..+.+.++|.+...
T Consensus 234 ~~~~i~~~~~~l~~~q~~~~ggl~-~~-d~~~---~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 234 PKKEIKPKTYQLNPNQTLFLGGLA-RF-DYLK---GEKTSFTFYVSNELNIH 280 (360)
T ss_pred CCCccCceEEEeCCCCEEEEceEE-EE-EEec---CCceEEEEEccCCceeE
Confidence 12345666666654421111110 00 1111 13455677777777654
No 383
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.26 E-value=1.1e-05 Score=62.51 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=40.4
Q ss_pred EEEEEEcCCCccchhhHhhhhh--------cCCEEEEEEECCCCCChH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDASDRSRFP-ESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
...++.+.|...-......+.. ..++++.|+|+.+-.... .......++ .. .=+|++||.|+..
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY------ADRILLTKTDVAG 164 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh------CCEEEEeccccCC
Confidence 3466777777654443333211 248899999987522111 101111122 11 2289999999876
Q ss_pred CCCHHHHHhhhcc
Q psy2159 137 AASEDEVRHFFGL 149 (194)
Q Consensus 137 ~~~~~e~~~~~~~ 149 (194)
+ .+++.+.+..
T Consensus 165 ~--~~~~~~~l~~ 175 (318)
T PRK11537 165 E--AEKLRERLAR 175 (318)
T ss_pred H--HHHHHHHHHH
Confidence 3 3556666544
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=9.2e-06 Score=63.99 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=55.3
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+.++|.+++|+++..+-....+..++.. +.. .+.|.+||+||+|+.++ .++..+.+.. .
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~-a~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~--------------~- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLAL-AWE---SGAEPVIVLTKADLCED--AEEKIAEVEA--------------L- 168 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHH-HHH---cCCCEEEEEEChhcCCC--HHHHHHHHHH--------------h-
Confidence 5789999999999643222233333333 333 56788999999999764 2222222221 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
....+++.+|++++.|++++.+++.
T Consensus 169 ~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCcEEEEECCCCccHHHHHHHhh
Confidence 1236789999999999999999875
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=4.9e-06 Score=64.44 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=38.8
Q ss_pred CEEEEEEEcCCCccchhh----Hhhh--------hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 64 DIVFTTHDLGGHVQARRV----WRDY--------FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
+..+.++||||....... ...+ ....+..++|+|++.. ...+. ....+.+. -.+.-+++||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~-~a~~f~~~----~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALS-QAKAFHEA----VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHH-HHHHHHhh----CCCCEEEEEC
Confidence 467999999996532211 1111 1246788999999852 33333 23333221 1345799999
Q ss_pred CCCCC
Q psy2159 132 IDIFD 136 (194)
Q Consensus 132 ~D~~~ 136 (194)
.|...
T Consensus 269 lD~t~ 273 (318)
T PRK10416 269 LDGTA 273 (318)
T ss_pred CCCCC
Confidence 99644
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=98.23 E-value=2.6e-06 Score=66.74 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.++++|++|+|||||+|+|.+.....+.+..+ .+ ..-+.+++. ..++||||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCccc
Confidence 37888999999999999999765443332222 11 122333221 26889999654
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.22 E-value=3.1e-06 Score=66.85 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC-----CccccCCCcceeEEE--eCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT-----AQHMPTLHPTSEELS--MGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~-----~~~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 76 (194)
+..++.++|.+|||||||+|++.+... ..+.+..|.+..... +++ ...++||||..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 345899999999999999999986431 112333333433332 322 24799999974
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=98.22 E-value=1.3e-05 Score=62.32 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=39.0
Q ss_pred CEEEEEEEcCCCccchh-h---Hhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR-V---WRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~-~---~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... . ...+ ....|.+++|+|+.... +.......+... -.+--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~----~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA----VGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence 35689999999764322 1 1111 12478899999986632 323333333221 123578999999755
No 389
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.16 E-value=2.7e-06 Score=63.61 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccc-----------cCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHM-----------PTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..++++|++|+|||||+|++.+.....+. .|..... +.+++ -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCccc
Confidence 46778899999999999999986433211 1222222 22322 27899999754
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.13 E-value=2.1e-05 Score=59.65 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=65.4
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH--HHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED--EVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--e~~~~~~~~~~~~~~~~~~ 160 (194)
+.-..+.|-.++|+.+.+|+--......+.-+.+. .++..+||+||+|+.++.... +....+...+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g--------- 141 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG--------- 141 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCC---------
Confidence 33345578888889888887444444444444444 678889999999998865554 3444554444
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++.+|++++.+++++.+++...+
T Consensus 142 --------y~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 142 --------YPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred --------eeEEEecCcCcccHHHHHHHhcCCe
Confidence 8999999999999999999886543
No 391
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.12 E-value=2.9e-05 Score=58.91 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCEEEEEEEcCCCccchhhHh-------hhh-----hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 63 GDIVFTTHDLGGHVQARRVWR-------DYF-----PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
.+..+.++||||......... ... ..+|.+++|+|++. ..+.. .+...+.+.. .+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHH-HHHHHHHhhC----CCCEEEEE
Confidence 346889999999764332211 111 23799999999975 23333 3334443321 24579999
Q ss_pred CCCCCC
Q psy2159 131 KIDIFD 136 (194)
Q Consensus 131 K~D~~~ 136 (194)
|.|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999755
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=4.5e-05 Score=61.14 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCccchhhH----hhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVW----RDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|........ ..+ ....+-+++|+|+.... ........+.+ .-.+--+++||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---~a~~~a~~F~~----~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---AAEAQAKAFKD----SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---hHHHHHHHHHh----ccCCcEEEEECccCCC
Confidence 4688999999965433211 111 22468899999987532 22223333322 1235678899999643
No 393
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.10 E-value=2.5e-05 Score=53.80 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=34.4
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
+..+.++||+|... .. ..++..+|.+++|..++-.+.+.-.+ ... ....=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~--~~-~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--SE-VDIASMADTTVVVMAPGAGDDIQAIK---AGI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--hh-hhHHHhCCEEEEEECCCchhHHHHhh---hhH------hhhcCEEEEeCCC
Confidence 45788899988542 22 34677889888887665222111111 111 1223389999988
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4e-06 Score=63.49 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-.+++|++|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 56677999999999999999753
No 395
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.08 E-value=5.6e-05 Score=53.68 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
+.-.++++|+.|+|||||++.+.+.. .++.+.+.+++..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~~i 63 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL--------IPNGDNDEWDGITP 63 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC--------CCCCcEEEECCEEE
Confidence 34466788999999999999999862 23445666666443
No 396
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.99 E-value=1.2e-05 Score=61.55 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=35.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccC-----CC--cc--eeEEEeCCEEEEEEEcCCCccc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPT-----LH--PT--SEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t-----~~--~~--~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
..++++|++|+|||||+|.+.+......... .+ .+ ...+...+ ...++|+||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 5788999999999999999998654322110 11 11 12233321 2268999998654
No 397
>KOG1424|consensus
Probab=97.99 E-value=1e-05 Score=64.94 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
..+.|.++|-|++||||+||.|.+.+...++.|.|-+.. ++.+.. .+-+.||||..
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~-~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP-SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC-CceecCCCCcc
Confidence 457889999999999999999999999888888887753 444443 56788999965
No 398
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.97 E-value=6.4e-05 Score=58.89 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEEEEcCCCccchhhHhhhh-------hcCCEEEEEEECCCCCC--h--------------------HHHHHHHHHHHh
Q psy2159 66 VFTTHDLGGHVQARRVWRDYF-------PAVDAIVFIIDASDRSR--F--------------------PESKYELDNLLA 116 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~~--~--------------------~~~~~~~~~~~~ 116 (194)
...++.+.|...-..+...+. -..|+++.|+|+.+-.. + ......+..-+.
T Consensus 94 d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~ 173 (341)
T TIGR02475 94 DHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLA 173 (341)
T ss_pred CEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHHH
Confidence 466778888665444433321 14688999999864210 0 001111111111
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 117 DDALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 117 ~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
. .=+|++||+|+..+...+++++.+..
T Consensus 174 ~------AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 174 C------ADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred h------CCEEEEeccccCCHHHHHHHHHHHHH
Confidence 1 23999999999876666666666654
No 399
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.95 E-value=9.3e-06 Score=58.55 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=33.9
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
++..+++......++ ++||+|||||||++++.+-+ .++.+.+.++|.
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--------~~~~G~I~i~g~ 64 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--------EPDSGSITVDGE 64 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--------CCCCceEEECCE
Confidence 455666666555555 67999999999999999873 345566666663
No 400
>PRK00098 GTPase RsgA; Reviewed
Probab=97.94 E-value=1.9e-05 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCcc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~ 77 (194)
...++++|++|+|||||+|++.+........... .+ ...+..++ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3467789999999999999998765432211110 11 12222322 237889999763
No 401
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=6.5e-06 Score=59.21 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=28.9
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.++..+++.-++..++ ++||.|+|||||++.+++.
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 3566677777777777 7799999999999999987
No 402
>KOG2423|consensus
Probab=97.91 E-value=1.1e-05 Score=62.94 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCCc
Q psy2159 5 WTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~ 76 (194)
++.+|++.. +-..++++.+.++|-|++||||+||+|..++.+.+.|..|.+. ..+.+- ..+-++|+||..
T Consensus 292 I~llRQf~k-Lh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm-krIfLIDcPGvV 363 (572)
T KOG2423|consen 292 IQLLRQFAK-LHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM-KRIFLIDCPGVV 363 (572)
T ss_pred HHHHHHHHh-hccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH-hceeEecCCCcc
Confidence 344444432 2246789999999999999999999999999998888777652 222222 467788999954
No 403
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=1e-05 Score=59.54 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=29.5
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTA 47 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~ 47 (194)
+++.+++......++ ++|++|||||||++.+.+-..+
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456667777666666 7799999999999999987544
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=9.8e-05 Score=41.68 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=29.9
Q ss_pred hhhhcCCEEEEEEECCCCCCh--HHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRF--PESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
...+-.++++|++|++....+ ++....+.++... +.++|+++|+||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 334567999999999886654 4444556666444 35899999999998
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.90 E-value=3.2e-05 Score=54.64 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=39.2
Q ss_pred CEEEEEEEcCCCccchh----hHhhhh--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.+.|++|...... ....+. ...+.+++|+|.... .........+.+.. + ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---~~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---QDAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---hHHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 35688899999753221 111111 248999999998643 23334455553332 2 3567779999755
No 406
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=9.6e-05 Score=58.31 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...++++|++|+||||++..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999998875
No 407
>PRK13695 putative NTPase; Provisional
Probab=97.85 E-value=0.00044 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++++++|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
No 408
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.84 E-value=0.0011 Score=46.99 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
+.+.+.++|+|+.... .....+..+|.+++++..+.. +.......+..+.. .+.|+.+++||+|.... ..++
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~-~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRH----FGIPVGVVINKYDLNDE-IAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc-hHHH
Confidence 4568999999966422 234456789999999987743 46666555554432 35678999999997543 3445
Q ss_pred HHhhhcc
Q psy2159 143 VRHFFGL 149 (194)
Q Consensus 143 ~~~~~~~ 149 (194)
+.+.++.
T Consensus 163 ~~~~~~~ 169 (179)
T cd03110 163 IEDYCEE 169 (179)
T ss_pred HHHHHHH
Confidence 5555544
No 409
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.84 E-value=2.3e-05 Score=60.80 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=26.2
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++......++ ++||+||||||+++.+.+-
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555565565555 6699999999999999997
No 410
>KOG2484|consensus
Probab=97.82 E-value=1.7e-05 Score=61.85 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
++++++.|+|-|++||||+||+|...+...+.++.|.+.. .+.++ ..+.+.|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCcee
Confidence 6788999999999999999999999998888887777653 33333 578999999944
No 411
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.81 E-value=0.00042 Score=57.16 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCcCCCCeEEEE-cCCCCChHHHHHHHHcC
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFL-GLDNAGKTFLLQMLKND 44 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~-G~~~~GKStli~~~~~~ 44 (194)
..++.+++..-......+|+++ ||+||||||.++.+...
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 3456666654444555667765 99999999999999875
No 412
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.81 E-value=3.2e-05 Score=56.60 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..++..++ ++||+|||||||+|.+..-
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455566666666555 7799999999999999876
No 413
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.81 E-value=4.4e-05 Score=54.42 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=28.2
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+..++..++...+...+ ++|++|||||||+|.+.+-
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 34667777776666555 5699999999999999886
No 414
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.79 E-value=0.0004 Score=43.60 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=56.1
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhh-HhhhhhcCCEEEEEEECCCCC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 102 (194)
+++.|.+|+||||+...+...-.. .+. ...-.+ .+.++|+++....... .......+|.++++++.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~--~v~~~~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK--RVLLID--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC--eEEEEC--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 567799999999999987764111 111 112222 7889999987643331 134466789999998876643
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
....................+..++.|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 444333332232232334455555554
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.78 E-value=0.00039 Score=57.09 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC--------CCC-ccccC---------------CCcceeEE-----------EeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND--------RTA-QHMPT---------------LHPTSEEL-----------SMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~--------~~~-~~~~t---------------~~~~~~~~-----------~~~~ 64 (194)
..-.++++|++|+||||++..|... +.. ....+ .+...... .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4456778899999999999887742 110 00001 11111111 1124
Q ss_pred EEEEEEEcCCCccchhhHh----hhh-hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWR----DYF-PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~----~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.++||+|......... .+. ......++|++... +.......+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 6789999999653322111 110 11234667777654 34455544544422 246679999999754
No 416
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.78 E-value=2e-05 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
..++.+++..++-+|. ++||+|||||||++++.+.
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 4667777777777776 7799999999999998875
No 417
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.77 E-value=1.7e-05 Score=59.24 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..+..++. ++||.|||||||++++.+-
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 455666666666666 7799999999999999985
No 418
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.77 E-value=4.2e-05 Score=54.19 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=34.0
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
-++.++...++..++ ++||+|+|||||++.+... ..++.+.+.+++..
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--------e~pt~G~i~~~~~d 65 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--------ERPTRGKILVNGHD 65 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--------hcCCCceEEECCee
Confidence 345555666667777 4599999999999999987 34555666665543
No 419
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=5.9e-05 Score=66.94 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEE-eCCEEEEEEEcCCCc--------cchhhHhhh----
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELS-MGDIVFTTHDLGGHV--------QARRVWRDY---- 85 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~---- 85 (194)
.+|+|++|+||||++.... .+|+.... +.++....++ .-+-.-.++||.|-. ...+.|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4688999999999988543 33331111 1111111111 111345666887722 233455544
Q ss_pred -----hhcCCEEEEEEECCCCCC---------hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 -----FPAVDAIVFIIDASDRSR---------FPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 -----~~~~d~ii~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+..++||+.+|+++.-+ -..++..+.++.+. -....|+++++||.|+.+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 245799999999876222 12233445555432 225689999999999876
No 420
>PRK04195 replication factor C large subunit; Provisional
Probab=97.74 E-value=8.4e-05 Score=61.07 Aligned_cols=38 Identities=34% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.++.......+...+++.|++|+||||+++.+.+.
T Consensus 25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444333344567778899999999999999875
No 421
>PRK07261 topology modulation protein; Provisional
Probab=97.73 E-value=9.8e-05 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+|+++|++|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999998754
No 422
>KOG3859|consensus
Probab=97.73 E-value=9.3e-05 Score=55.38 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-----cccCCCcceeEEEe--CC--EEEEEEEcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----HMPTLHPTSEELSM--GD--IVFTTHDLGGH 75 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-----~~~t~~~~~~~~~~--~~--~~~~~~d~~g~ 75 (194)
.++|+.+|..|.|||||+..+++-++.. ..|++.....+.++ ++ .++++.||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 4789999999999999999999988752 23333333333333 33 68999999983
No 423
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.71 E-value=3.2e-05 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999975
No 424
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00056 Score=54.28 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC------CC-cccc---------------CCCcceeEE-------------E-eC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR------TA-QHMP---------------TLHPTSEEL-------------S-MG 63 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~------~~-~~~~---------------t~~~~~~~~-------------~-~~ 63 (194)
.+..|+++|++||||||++..+...- .. .... ..+...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34578899999999999999887421 10 0000 111111100 0 01
Q ss_pred CEEEEEEEcCCCccchh----hHhhhh--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... .....+ ...+.+++|+|++.. .......+..+.. -..-=+++||.|...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCC
Confidence 35789999999754221 112222 235778888887542 3444444545421 123358899999755
No 425
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.71 E-value=3.7e-05 Score=59.94 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
+..+++..++..++ ++||+||||||+++.+.+-..
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34556666676666 889999999999999998743
No 426
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.70 E-value=8e-05 Score=51.84 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHhCCcCCC-CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEE
Q psy2159 11 VLLRLGLWKKS-GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 11 ~~~~~~~~~~~-~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 68 (194)
+++.+++.... -.+.+.||+|||||||++.++.- +.++.+.+.+.|..+.
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--------isp~~G~l~f~Ge~vs 68 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDVS 68 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--------cCCCCceEEEcCcccc
Confidence 45556655433 35678899999999999999987 4456666666664443
No 427
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.66 E-value=0.0019 Score=52.15 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=42.4
Q ss_pred CEEEEEEEcCCCccch----hhHhhhhh---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQAR----RVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|..... .....++. ...-+.+|++.+. ....+...+..+.. .+ +-=+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~----~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSR----LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCC----CC-CCEEEEecccccc
Confidence 4678999999976432 12222333 2346677888765 33444444444421 11 2358899999755
Q ss_pred CCCHHHHHhhhc
Q psy2159 137 AASEDEVRHFFG 148 (194)
Q Consensus 137 ~~~~~e~~~~~~ 148 (194)
. .-.+...+.
T Consensus 372 ~--~G~i~~~~~ 381 (424)
T PRK05703 372 S--LGSILSLLI 381 (424)
T ss_pred c--ccHHHHHHH
Confidence 3 224444443
No 428
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.66 E-value=2e-05 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
..++.|+.||||||++..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999987664
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.65 E-value=0.00098 Score=45.36 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC------CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
.-|.+|+||||+.-.+...-... +....-++.+ ...+.++|+|+... ......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-----GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence 33899999999987666431110 1111111111 16789999997542 33345688899999999875
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
.. ++......+..+.... ...++.+++|+.+.
T Consensus 78 ~~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PT-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred hh-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 43 3555445454543322 45678899999974
No 430
>KOG1533|consensus
Probab=97.63 E-value=5.7e-05 Score=55.09 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEEEEEEcCCCccchh---h---HhhhhhcCCEEEEEEECC------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 65 IVFTTHDLGGHVQARR---V---WRDYFPAVDAIVFIIDAS------DRSRFPESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~---~---~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
..+.++|+|||.+... . ....++..|.=+.++.+. +|..|-.. .+..+... -.-..|=+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tM-l~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATM-LHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHH-HhhcccchhhhhHh
Confidence 5689999999987432 1 111233355444444433 33333222 22222111 11356778889999
Q ss_pred CCCC
Q psy2159 133 DIFD 136 (194)
Q Consensus 133 D~~~ 136 (194)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9754
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.63 E-value=8.7e-05 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++|+.|||||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 35668899999999999999987
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=97.62 E-value=4.8e-05 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+|+|++||||||+.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.62 E-value=5.4e-05 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+|+++|+|||||||+.+.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 434
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.61 E-value=7.9e-05 Score=53.48 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
++..+++...+.. ++++|+.|||||||++.+.+.. .++.+.+.+++..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~~g~~ 55 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL--------RPQSGAVLIDGEP 55 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceeEEECCEE
Confidence 4555665555554 5577999999999999999862 2334555555543
No 435
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=8.2e-05 Score=54.44 Aligned_cols=45 Identities=31% Similarity=0.480 Sum_probs=31.1
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
+..+++..++...+ ++|++|+|||||++++.+- .+++.+.+.+++
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--------~d~t~G~i~~~g 65 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--------VDPTSGEILFNG 65 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--------cCCCcceEEecc
Confidence 34455556666555 7799999999999999984 444444555544
No 436
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.00083 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4557888899999999999999876
No 437
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=0.00013 Score=52.74 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=37.6
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
+..+..+++..+...++ |+|..|+|||||+|.+.+. ..++.+.+.+++..+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--------l~~t~G~I~Idg~dV 70 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--------LKPTSGQILIDGVDV 70 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--------cccCCceEEECceec
Confidence 34667777777777766 6699999999999999987 445556666655443
No 438
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.58 E-value=3.8e-05 Score=56.29 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
++..+++..+..+++ ++|++|+|||||++.+.+.-.
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 556677777777877 779999999999999998733
No 439
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=4.6e-05 Score=57.86 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
...++..+...|. ++|.+|+|||||++++..- ..|+.+.+.++|..+.-.+-.+....++
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--------e~PtsG~v~v~G~di~~l~~~~Lr~~R~ 83 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--------ERPTSGSVFVDGQDLTALSEAELRQLRQ 83 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--------CCCCCceEEEcCEecccCChHHHHHHHh
Confidence 3445555555555 9999999999999999887 4466788888886666655555444444
No 440
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=5.8e-05 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578899999999999999986
No 441
>PF05729 NACHT: NACHT domain
Probab=97.56 E-value=0.00055 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++|.|++|+||||++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 457799999999999998864
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00052 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.-.++++|+.||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 33456889999999999998874
No 443
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.56 E-value=9.9e-05 Score=54.71 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=35.2
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEE
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d 71 (194)
...+++..+...++ ++|++||||||+++.+.+- +.++.+.+.++|..+.-+|
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--------iept~G~I~i~g~~i~~~d 69 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--------IEPTSGEILIDGEDISDLD 69 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--------cCCCCceEEECCeecccCC
Confidence 34455555566665 6699999999999988876 4556666666665444433
No 444
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.56 E-value=0.00069 Score=50.79 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++|.|||||||+.+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999988753
No 445
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00046 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..-.++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999997765
No 446
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=0.00011 Score=53.70 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=26.5
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666655554 558899999999999999986
No 447
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.53 E-value=9.9e-05 Score=53.85 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=26.3
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555665555555 458899999999999999986
No 448
>KOG2485|consensus
Probab=97.53 E-value=0.0003 Score=53.48 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCC-cCCCCeEEEEcCCCCChHHHHHHHHcCC-----CCccccCCCccee---EEEeC-CEEEEEEEcCCC
Q psy2159 6 TKFREVLLRLGL-WKKSGKLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSE---ELSMG-DIVFTTHDLGGH 75 (194)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~~~~~~-----~~~~~~t~~~~~~---~~~~~-~~~~~~~d~~g~ 75 (194)
.++..-+.+... ...+.++.|+|-||+|||||+|++.... ...+.+..|.+.. .+.+. .-.+.+.||||.
T Consensus 127 ~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 127 TILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred HHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 344554444443 4578899999999999999999776543 3345555555542 23333 246888899994
Q ss_pred c
Q psy2159 76 V 76 (194)
Q Consensus 76 ~ 76 (194)
-
T Consensus 207 l 207 (335)
T KOG2485|consen 207 L 207 (335)
T ss_pred C
Confidence 3
No 449
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.53 E-value=8e-05 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++|+|||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999854
No 450
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.53 E-value=0.00018 Score=52.78 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 455556555555 4558899999999999999986
No 451
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00012 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+.++..+++..+...+. ++||.|||||||.+.+.+.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35777788888888888 5699999999999999987
No 452
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.52 E-value=0.0018 Score=51.28 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-----C----ccccCC---------------CcceeEE-----------EeCCE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-----A----QHMPTL---------------HPTSEEL-----------SMGDI 65 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-----~----~~~~t~---------------~~~~~~~-----------~~~~~ 65 (194)
...++++||.|+||||.+-.|..... . .+..|- +.....+ .+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55666889999999999887664322 0 011111 1111111 12336
Q ss_pred EEEEEEcCCCccchhh----Hhhhhhc--CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRV----WRDYFPA--VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~ 136 (194)
.+.++||.|....... ...++.. ..-+-+|++++. ....+...+..+. ..|+ =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~------~~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFS------LFPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhc------cCCcceeEEEcccccC
Confidence 7999999997754432 2222222 234555677665 3456566565553 2333 47889999655
No 453
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00011 Score=53.66 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++..++++|+.|+|||||++.+.+.
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC
Confidence 444554443347789999999999999999986
No 454
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.52 E-value=0.00033 Score=49.41 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=29.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
-+.++|++|||||||++++...- ...+.....+...+..+.+ |.+|.+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l-----~~~g~~vg~Ik~~~~~~~~-d~~g~D 55 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDMDV-DKPGKD 55 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHH-----hhcCCeEEEEEEcCCCccc-CCCCcH
Confidence 46688999999999999998651 1122233555554433333 666643
No 455
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.0002 Score=53.18 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=25.2
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455555555 4558899999999999999986
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.52 E-value=0.00019 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++..++. .++++|+.|||||||++.+.+.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555555444 4568899999999999999986
No 457
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.52 E-value=0.0023 Score=41.40 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=57.4
Q ss_pred EEE-cCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC
Q psy2159 25 LFL-GLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 25 ~v~-G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
.++ +.+|+||||+...+...-.... +....-++.+ +..+.++|+|+.... .....+..+|.++++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh
Confidence 344 7789999998776654311100 1111111111 127899999986533 23446778999999987655
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 101 RSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
. +.......+..+.+....+...+.+|+|+
T Consensus 77 ~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3 45555555555544322114567788875
No 458
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00012 Score=53.78 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
..++.+++...+..++ ++|++|||||||.+.+.+..-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4666777776565555 899999999999999998744
No 459
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.00089 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
++..++++|++|+||||++..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355677889999999999987764
No 460
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.50 E-value=0.00021 Score=51.92 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455555555444 4568899999999999999986
No 461
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.50 E-value=0.00023 Score=50.29 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|++++|+|+.++.+... ..+.+.+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643222 12222311 0114689999999999965
No 462
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.50 E-value=0.00013 Score=53.32 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=26.4
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455666665555 4558899999999999999986
No 463
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.49 E-value=0.00012 Score=53.74 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=26.8
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666655554 558899999999999999986
No 464
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.49 E-value=0.00013 Score=54.48 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556666665555 4558899999999999999986
No 465
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.48 E-value=0.00015 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
.+.++|++|+|||||+|.+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 455889999999999999998643
No 466
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.48 E-value=0.00014 Score=55.94 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=27.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..++..+. ++|+.||||||+++.+.+.
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 455666677777655 8899999999999999987
No 467
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.48 E-value=0.00026 Score=51.75 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++...+. .++++|+.|||||||++.+.+.
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445555555555 4568899999999999999986
No 468
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.47 E-value=0.00014 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456666666555 4558899999999999999986
No 469
>PRK10867 signal recognition particle protein; Provisional
Probab=97.45 E-value=0.00074 Score=54.52 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCccchh----hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.++||+|...... ....+ .-..+.+++|+|... -.+.......+.+. . ...=+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~---gq~av~~a~~F~~~---~-~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT---GQDAVNTAKAFNEA---L-GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc---HHHHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence 35689999999543221 11111 124678899999754 23444444444321 1 1234667898853
No 470
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00027 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555554 558899999999999999986
No 471
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.45 E-value=0.00024 Score=52.19 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=25.4
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555554 558899999999999999886
No 472
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.45 E-value=0.00013 Score=43.41 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998875
No 473
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=0.00026 Score=52.54 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455566555555 4558899999999999999986
No 474
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00017 Score=56.73 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=57.0
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+++..+...++ ++|..|||||||+..+++-.. |..+.+-.+| .-+|-...++|+.++...+.+.+.+=
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--------PqsG~I~ldg---~pV~~e~ledYR~LfSavFsDyhLF~ 410 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--------PQSGEILLDG---KPVSAEQLEDYRKLFSAVFSDYHLFD 410 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--------CCCCceeECC---ccCCCCCHHHHHHHHHHHhhhHhhhH
Confidence 44555666677 559999999999999998733 4445566665 22334445567777777666554443
Q ss_pred EEEECCCCCChHHHHHHHHHHH
Q psy2159 94 FIIDASDRSRFPESKYELDNLL 115 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~ 115 (194)
-.+......+...+..|+..+-
T Consensus 411 ~ll~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 411 QLLGPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred hhhCCccCCChHHHHHHHHHHH
Confidence 3444444455666666666654
No 475
>KOG0734|consensus
Probab=97.44 E-value=0.0012 Score=54.00 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=67.1
Q ss_pred cHHHHHHH--HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 3 EIWTKFRE--VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
+|..|+++ -+.++| .+-+.-|+++||||.|||-|.+.+.+..-...+..-|.....+.. -.|..+.+.
T Consensus 318 EiVefLkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V---------GvGArRVRd 387 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV---------GVGARRVRD 387 (752)
T ss_pred HHHHHhcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh---------cccHHHHHH
Confidence 35556665 455565 567778999999999999999999986333222222222221111 134556666
Q ss_pred hHhhhhhcCCEEEEE--EECCC----CCChHHHHHHHHHHHhC--CCCCCCcEEEEe
Q psy2159 81 VWRDYFPAVDAIVFI--IDASD----RSRFPESKYELDNLLAD--DALTDVPILILG 129 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v--~d~~~----~~~~~~~~~~~~~~~~~--~~~~~~piiiv~ 129 (194)
++...-..+=+|||+ +|+-. +......++.+.+++.. -..++-++||++
T Consensus 388 LF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 388 LFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred HHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 777666677777775 22211 22232344556666543 233456777666
No 476
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.44 E-value=0.0003 Score=51.08 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34445444444 5568899999999999999986
No 477
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00027 Score=52.37 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455556555555 4558899999999999999986
No 478
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.43 E-value=0.00022 Score=50.89 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..++...++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44455454444 5568899999999999999987
No 479
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00016 Score=52.67 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
++.+++.-+...|+ ++|+.|+||||+++++.+. ..+..+.+.++|..
T Consensus 19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--------~~~~~G~I~~~G~d 66 (237)
T COG0410 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--------VRPRSGRIIFDGED 66 (237)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeeEEECCee
Confidence 44555666666666 7799999999999999987 33445666666544
No 480
>KOG0469|consensus
Probab=97.42 E-value=0.00074 Score=54.67 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=82.3
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---------ccccC------CCcceeE--------------------E
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---------QHMPT------LHPTSEE--------------------L 60 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---------~~~~t------~~~~~~~--------------------~ 60 (194)
+...+--++-++.+-..|||||..+|..+.-- ++..| .+.+++. -
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 33344446778889999999999998865211 11111 1111111 1
Q ss_pred EeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--C-C
Q psy2159 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--D-A 137 (194)
Q Consensus 61 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~-~ 137 (194)
+.++..++++|.||+.++.+.....++--|+.+.|+|.-+.--. +....+.+.+. ..+..+++.||+|.. + .
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~----ERIkPvlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLVMNKMDRALLELQ 168 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHH----hhccceEEeehhhHHHHhhc
Confidence 12347899999999999999888889999999999998663322 22333444443 244557889999942 2 5
Q ss_pred CCHHHHHhhhcc
Q psy2159 138 ASEDEVRHFFGL 149 (194)
Q Consensus 138 ~~~~e~~~~~~~ 149 (194)
.+.+++.+.++.
T Consensus 169 ~~~EeLyqtf~R 180 (842)
T KOG0469|consen 169 LSQEELYQTFQR 180 (842)
T ss_pred CCHHHHHHHHHH
Confidence 566666655543
No 481
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.42 E-value=0.00069 Score=46.43 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=29.3
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.++...++.. ++++|+.|+|||||++.+.+.. .+..+.+.+++
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~~~ 61 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--------EPDEGIVTWGS 61 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCceEEEECC
Confidence 3344444444 4588999999999999999863 23445566655
No 482
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.42 E-value=0.0015 Score=45.29 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred HhCCcCCC-CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKS-GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~-~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++...++ -.++++|+.|+|||||++.+.+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33434333 45668899999999999999986
No 483
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.41 E-value=0.00034 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444444444 4558899999999999999986
No 484
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.41 E-value=0.0003 Score=52.09 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.++...++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554444 4558899999999999999986
No 485
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.41 E-value=0.0024 Score=48.80 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=71.7
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccch----------------
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------------- 79 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------------- 79 (194)
+...+-.+++++|++|.|||+++++|.....+... ... ....+....+|......
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d----~~~-----~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD----EDA-----ERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC----CCC-----ccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 34456678999999999999999999986432211 111 11244444554432211
Q ss_pred --------hhHhhhhhcCCEEEEEEECCC---CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhc
Q psy2159 80 --------RVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148 (194)
Q Consensus 80 --------~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~ 148 (194)
......++....=++++|--+ ..+....+..+..+....+.-++|++.+|++-=..--....++...++
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~ 206 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE 206 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC
Confidence 112234667788888998543 223444455555554445557899999998533211122245555554
Q ss_pred c
Q psy2159 149 L 149 (194)
Q Consensus 149 ~ 149 (194)
.
T Consensus 207 ~ 207 (302)
T PF05621_consen 207 P 207 (302)
T ss_pred C
Confidence 4
No 486
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.40 E-value=0.00033 Score=51.43 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455555554544 558899999999999999986
No 487
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.40 E-value=0.00032 Score=54.95 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++...... ..+..=++++||||+|||||.+++...
T Consensus 63 lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 63 FVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455666655322 333334567799999999999999864
No 488
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.40 E-value=0.00033 Score=51.29 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=25.5
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++...+. .++++|+.|+|||||++.+.+.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344555554444 5558899999999999999986
No 489
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.40 E-value=0.00033 Score=53.07 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d 71 (194)
.+++++|++|+|||||++.+.+. ..+..+.+.+++..+..+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~--------~~~~~G~i~~~g~~v~~~d 153 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI--------LSTGISQLGLRGKKVGIVD 153 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc--------cCCCCceEEECCEEeecch
Confidence 58899999999999999999987 3344566666666666555
No 490
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.40 E-value=0.00037 Score=50.89 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=24.9
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++...++. .++++|+.|||||||++.+.+.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455454444 4568899999999999999986
No 491
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.40 E-value=0.00038 Score=51.15 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++...+. .++++|+.|+|||||++.+.+.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554444 4558899999999999999986
No 492
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00032 Score=51.16 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++...+.. ++++|+.|||||||++.+.+.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334454545554 558899999999999999986
No 493
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.00047 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++...++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444444444 4558899999999999999976
No 494
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.39 E-value=0.00036 Score=50.96 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345555555454 4558899999999999999986
No 495
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.39 E-value=0.00037 Score=50.33 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=24.2
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++...+. .++++|+.|+|||||++.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444444 4568899999999999999986
No 496
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.0004 Score=49.09 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44455554444 5558899999999999999986
No 497
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.39 E-value=0.0002 Score=52.93 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5666776666665 558899999999999999986
No 498
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.39 E-value=0.00034 Score=51.29 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456666665555 4558899999999999999986
No 499
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.39 E-value=0.00031 Score=52.18 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 344555555455 4558899999999999999986
No 500
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.00098 Score=53.35 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=58.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-----c---ccc---------------CCCcceeEE----------EeCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-----Q---HMP---------------TLHPTSEEL----------SMGDIVFT 68 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-----~---~~~---------------t~~~~~~~~----------~~~~~~~~ 68 (194)
.-++++|++||||||++..+...... - ... ..+...... ...+..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 34678899999999999988752100 0 000 111111111 11356789
Q ss_pred EEEcCCCccc-hh---hHhhhhh-----cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 69 THDLGGHVQA-RR---VWRDYFP-----AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 69 ~~d~~g~~~~-~~---~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
++||+|.... .. .+..++. ...-.++|+|++.. ..........+ + .-.+-=+++||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~----~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-E----SLNYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-c----CCCCCEEEEEcccCCC
Confidence 9999996522 11 1222222 23467889998773 34444444443 1 1123357888888654
Done!