Query psy2159
Match_columns 194
No_of_seqs 123 out of 1728
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 17:49:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 100.0 1.4E-37 4.7E-42 224.3 20.1 194 1-194 1-198 (198)
2 1m2o_B GTP-binding protein SAR 100.0 1.2E-35 4.1E-40 212.8 20.2 185 4-193 6-190 (190)
3 1zj6_A ADP-ribosylation factor 100.0 2E-34 6.8E-39 205.7 20.9 164 18-193 13-176 (187)
4 1ksh_A ARF-like protein 2; sma 100.0 1.2E-34 4.1E-39 206.5 19.2 163 19-193 16-178 (186)
5 1fzq_A ADP-ribosylation factor 100.0 4.3E-34 1.5E-38 203.1 20.0 163 19-193 14-176 (181)
6 2x77_A ADP-ribosylation factor 100.0 1.5E-34 5.2E-39 206.5 17.5 163 19-193 20-182 (189)
7 1r8s_A ADP-ribosylation factor 100.0 4.7E-34 1.6E-38 199.3 19.2 160 22-193 1-160 (164)
8 1upt_A ARL1, ADP-ribosylation 100.0 1E-33 3.4E-38 198.8 20.7 163 19-193 5-167 (171)
9 2b6h_A ADP-ribosylation factor 100.0 1.4E-34 4.7E-39 207.6 16.3 170 11-193 20-189 (192)
10 1moz_A ARL1, ADP-ribosylation 100.0 4.2E-34 1.4E-38 203.0 18.5 175 7-193 4-178 (183)
11 2h17_A ADP-ribosylation factor 100.0 1.1E-33 3.6E-38 201.0 19.4 165 17-193 17-181 (181)
12 4dkx_A RAS-related protein RAB 100.0 1.2E-34 4E-39 211.2 14.5 158 18-193 10-174 (216)
13 1zd9_A ADP-ribosylation factor 100.0 3.7E-33 1.3E-37 199.4 19.4 164 18-193 19-183 (188)
14 2h57_A ADP-ribosylation factor 100.0 1.1E-32 3.9E-37 197.0 17.8 165 17-193 17-185 (190)
15 4bas_A ADP-ribosylation factor 100.0 6.1E-33 2.1E-37 199.5 15.8 164 18-193 14-187 (199)
16 3o47_A ADP-ribosylation factor 100.0 1.2E-31 4E-36 206.9 17.3 163 19-193 163-325 (329)
17 3q72_A GTP-binding protein RAD 100.0 2.1E-31 7.1E-36 186.2 16.2 157 20-193 1-162 (166)
18 2nzj_A GTP-binding protein REM 100.0 5.3E-31 1.8E-35 185.5 16.6 158 19-193 2-167 (175)
19 3lvq_E ARF-GAP with SH3 domain 100.0 7.4E-31 2.5E-35 212.9 19.0 165 17-193 318-482 (497)
20 1c1y_A RAS-related protein RAP 100.0 1.1E-30 3.7E-35 182.5 15.1 158 20-193 2-165 (167)
21 1r2q_A RAS-related protein RAB 100.0 1.2E-30 4.1E-35 182.7 15.2 158 18-193 3-167 (170)
22 2hup_A RAS-related protein RAB 100.0 1.1E-30 3.6E-35 188.6 15.1 157 19-193 27-191 (201)
23 2fg5_A RAB-22B, RAS-related pr 100.0 2.2E-30 7.6E-35 185.5 16.6 159 17-193 19-184 (192)
24 1u8z_A RAS-related protein RAL 100.0 1.3E-30 4.5E-35 182.0 15.0 157 20-193 3-165 (168)
25 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-30 7.4E-35 184.5 16.1 156 17-193 16-178 (184)
26 3kkq_A RAS-related protein M-R 100.0 1.6E-30 5.4E-35 184.6 15.1 159 18-193 15-180 (183)
27 3q85_A GTP-binding protein REM 100.0 1.3E-30 4.5E-35 182.6 14.5 156 21-193 2-165 (169)
28 2hxs_A RAB-26, RAS-related pro 100.0 6.8E-31 2.3E-35 185.5 13.0 159 18-193 3-171 (178)
29 3t5g_A GTP-binding protein RHE 100.0 9.8E-31 3.3E-35 185.3 13.6 157 20-193 5-167 (181)
30 3bc1_A RAS-related protein RAB 100.0 2E-30 7E-35 185.3 15.3 159 18-193 8-183 (195)
31 1ek0_A Protein (GTP-binding pr 100.0 4.1E-30 1.4E-34 179.9 16.4 156 20-193 2-167 (170)
32 3cbq_A GTP-binding protein REM 100.0 2.5E-30 8.7E-35 185.8 15.4 160 17-193 19-186 (195)
33 1x3s_A RAS-related protein RAB 100.0 5.7E-30 1.9E-34 183.3 16.9 158 19-193 13-176 (195)
34 2efe_B Small GTP-binding prote 100.0 6E-30 2.1E-34 181.1 16.8 159 17-193 8-173 (181)
35 4dsu_A GTPase KRAS, isoform 2B 100.0 3.5E-30 1.2E-34 183.4 15.5 158 19-193 2-164 (189)
36 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.5E-30 1.9E-34 180.7 16.3 160 18-193 4-172 (177)
37 2bov_A RAla, RAS-related prote 100.0 6.2E-30 2.1E-34 184.6 16.7 158 19-193 12-175 (206)
38 3t1o_A Gliding protein MGLA; G 100.0 1E-30 3.4E-35 187.4 12.2 157 18-193 11-190 (198)
39 3reg_A RHO-like small GTPase; 100.0 1.2E-30 4E-35 187.1 12.5 163 12-193 14-186 (194)
40 1kao_A RAP2A; GTP-binding prot 100.0 2E-30 6.8E-35 180.9 13.2 157 20-193 2-164 (167)
41 2fn4_A P23, RAS-related protei 100.0 3.8E-30 1.3E-34 181.9 14.9 159 18-193 6-170 (181)
42 2g6b_A RAS-related protein RAB 100.0 7E-30 2.4E-34 180.6 16.0 159 17-193 6-172 (180)
43 3oes_A GTPase rhebl1; small GT 100.0 1.1E-30 3.6E-35 188.4 11.9 158 19-193 22-185 (201)
44 2bme_A RAB4A, RAS-related prot 100.0 5.5E-30 1.9E-34 182.1 15.4 157 19-193 8-171 (186)
45 2fh5_B SR-beta, signal recogni 100.0 1E-29 3.4E-34 184.9 17.0 176 18-193 4-214 (214)
46 2a9k_A RAS-related protein RAL 100.0 5.6E-30 1.9E-34 181.9 15.3 159 18-193 15-179 (187)
47 1z06_A RAS-related protein RAB 100.0 6.2E-30 2.1E-34 182.6 15.5 159 18-193 17-186 (189)
48 3clv_A RAB5 protein, putative; 100.0 1.3E-29 4.3E-34 182.5 17.2 155 19-193 5-202 (208)
49 3tw8_B RAS-related protein RAB 100.0 3.6E-30 1.2E-34 182.0 14.0 156 19-193 7-169 (181)
50 1z0f_A RAB14, member RAS oncog 100.0 1.2E-29 4.2E-34 179.0 16.6 158 18-193 12-176 (179)
51 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-29 4.3E-34 179.1 16.7 154 19-193 5-167 (178)
52 1z08_A RAS-related protein RAB 100.0 1.6E-30 5.6E-35 182.2 11.9 158 18-193 3-167 (170)
53 2fu5_C RAS-related protein RAB 100.0 1E-30 3.4E-35 185.6 11.0 157 19-193 6-169 (183)
54 2ew1_A RAS-related protein RAB 100.0 6.4E-30 2.2E-34 184.5 15.1 157 19-193 24-187 (201)
55 1z2a_A RAS-related protein RAB 100.0 2.3E-30 7.7E-35 181.0 12.3 156 19-193 3-165 (168)
56 1z0j_A RAB-22, RAS-related pro 100.0 8.1E-30 2.8E-34 178.5 15.2 158 18-193 3-167 (170)
57 3tkl_A RAS-related protein RAB 100.0 1.4E-29 4.9E-34 181.4 16.7 157 19-193 14-177 (196)
58 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-29 4.9E-34 182.6 16.4 157 19-193 6-169 (203)
59 3q3j_B RHO-related GTP-binding 100.0 2.7E-30 9.1E-35 188.2 12.6 157 18-193 24-201 (214)
60 2atv_A RERG, RAS-like estrogen 100.0 8.3E-30 2.8E-34 183.0 14.7 157 19-193 26-189 (196)
61 3dz8_A RAS-related protein RAB 100.0 2.9E-30 9.8E-35 184.7 11.9 157 19-193 21-184 (191)
62 2bcg_Y Protein YP2, GTP-bindin 100.0 1.7E-29 5.7E-34 182.7 15.9 157 19-193 6-169 (206)
63 2gf9_A RAS-related protein RAB 100.0 1.5E-29 5.1E-34 180.6 15.4 156 20-193 21-183 (189)
64 2oil_A CATX-8, RAS-related pro 100.0 1.5E-29 5.1E-34 181.2 15.2 158 18-193 22-186 (193)
65 2a5j_A RAS-related protein RAB 100.0 1.3E-29 4.5E-34 181.3 14.7 158 18-193 18-182 (191)
66 2o52_A RAS-related protein RAB 100.0 4.8E-30 1.6E-34 185.0 12.5 158 18-193 22-186 (200)
67 2y8e_A RAB-protein 6, GH09086P 100.0 1.3E-29 4.4E-34 178.9 14.4 157 19-193 12-175 (179)
68 2f7s_A C25KG, RAS-related prot 100.0 3.2E-30 1.1E-34 187.9 11.6 159 18-193 22-197 (217)
69 2atx_A Small GTP binding prote 100.0 1.5E-29 5E-34 181.3 14.8 156 20-193 17-191 (194)
70 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-29 5.6E-34 182.3 15.0 160 16-193 20-198 (201)
71 1g16_A RAS-related protein SEC 100.0 7.6E-30 2.6E-34 178.7 12.8 156 20-193 2-163 (170)
72 2ce2_X GTPase HRAS; signaling 100.0 3.4E-29 1.2E-33 174.3 15.8 157 20-193 2-163 (166)
73 2p5s_A RAS and EF-hand domain 100.0 1.8E-29 6.3E-34 181.7 14.8 158 18-193 25-195 (199)
74 2erx_A GTP-binding protein DI- 100.0 1.5E-29 5.1E-34 177.4 13.9 157 20-193 2-165 (172)
75 1ky3_A GTP-binding protein YPT 100.0 2.1E-29 7.2E-34 178.2 14.6 160 18-193 5-176 (182)
76 2yc2_C IFT27, small RAB-relate 100.0 3E-30 1E-34 186.5 10.2 158 19-193 18-190 (208)
77 2gf0_A GTP-binding protein DI- 100.0 2.4E-29 8.3E-34 180.6 14.5 159 18-193 5-169 (199)
78 4gzl_A RAS-related C3 botulinu 100.0 1.1E-29 3.9E-34 183.5 12.9 166 10-193 19-203 (204)
79 3c5c_A RAS-like protein 12; GD 100.0 7.8E-30 2.7E-34 182.0 11.7 159 17-193 17-184 (187)
80 2il1_A RAB12; G-protein, GDP, 100.0 2.9E-29 1E-33 179.7 14.6 158 19-193 24-188 (192)
81 3cpj_B GTP-binding protein YPT 100.0 1.7E-29 5.8E-34 185.0 13.2 157 19-193 11-174 (223)
82 2g3y_A GTP-binding protein GEM 100.0 6.9E-29 2.4E-33 180.2 15.6 158 19-193 35-201 (211)
83 2q3h_A RAS homolog gene family 100.0 4.1E-29 1.4E-33 179.9 14.3 159 17-193 16-193 (201)
84 2j1l_A RHO-related GTP-binding 100.0 2.8E-29 9.7E-34 182.7 13.3 159 17-193 30-207 (214)
85 3cph_A RAS-related protein SEC 100.0 5.6E-29 1.9E-33 180.6 14.8 158 18-193 17-180 (213)
86 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.4E-29 1.5E-33 177.3 13.8 157 19-193 3-178 (186)
87 1vg8_A RAS-related protein RAB 100.0 4.7E-29 1.6E-33 180.3 14.0 160 18-193 5-173 (207)
88 3con_A GTPase NRAS; structural 100.0 8E-29 2.7E-33 176.8 14.8 158 19-193 19-181 (190)
89 2j0v_A RAC-like GTP-binding pr 100.0 3.2E-29 1.1E-33 182.0 12.4 157 19-193 7-178 (212)
90 3gj0_A GTP-binding nuclear pro 100.0 4.2E-30 1.4E-34 187.9 7.6 157 18-193 12-173 (221)
91 2fv8_A H6, RHO-related GTP-bin 100.0 9E-29 3.1E-33 179.1 14.4 173 17-193 21-198 (207)
92 1m7b_A RND3/RHOE small GTP-bin 100.0 5.6E-29 1.9E-33 177.0 12.6 157 19-193 5-181 (184)
93 3bwd_D RAC-like GTP-binding pr 100.0 2.5E-29 8.4E-34 178.1 10.6 157 19-193 6-179 (182)
94 4djt_A GTP-binding nuclear pro 100.0 6.1E-29 2.1E-33 181.2 11.8 158 18-193 8-173 (218)
95 1gwn_A RHO-related GTP-binding 100.0 1.3E-28 4.4E-33 178.2 12.4 158 18-193 25-202 (205)
96 2cjw_A GTP-binding protein GEM 100.0 5.6E-28 1.9E-32 173.1 15.4 158 19-193 4-170 (192)
97 2lkc_A Translation initiation 100.0 1.1E-27 3.9E-32 168.9 16.1 163 17-193 4-169 (178)
98 3llu_A RAS-related GTP-binding 100.0 4.2E-28 1.4E-32 174.2 12.3 165 17-193 16-195 (196)
99 3l0i_B RAS-related protein RAB 100.0 8.3E-30 2.8E-34 183.5 2.9 157 19-193 31-194 (199)
100 2dyk_A GTP-binding protein; GT 99.9 3.1E-27 1.1E-31 164.0 13.1 149 22-194 2-161 (161)
101 2wji_A Ferrous iron transport 99.9 4.2E-27 1.5E-31 164.5 13.7 149 20-193 2-163 (165)
102 2gj8_A MNME, tRNA modification 99.9 9.6E-27 3.3E-31 163.9 14.7 150 20-193 3-164 (172)
103 2zej_A Dardarin, leucine-rich 99.9 7.5E-28 2.5E-32 171.2 8.9 157 21-193 2-176 (184)
104 3th5_A RAS-related C3 botulinu 99.9 1.8E-29 6E-34 182.4 0.0 173 17-193 26-203 (204)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 1.5E-26 5.1E-31 177.0 14.2 159 20-193 2-179 (307)
106 2qu8_A Putative nucleolar GTP- 99.9 2.8E-26 9.5E-31 168.4 14.8 158 19-193 27-203 (228)
107 1svi_A GTP-binding protein YSX 99.9 1.5E-26 5E-31 165.7 13.0 157 19-193 21-193 (195)
108 3r7w_B Gtpase2, GTP-binding pr 99.9 7.2E-27 2.5E-31 177.9 11.9 158 23-193 1-172 (331)
109 3pqc_A Probable GTP-binding pr 99.9 1.6E-26 5.6E-31 165.1 12.1 158 19-193 21-192 (195)
110 2wkq_A NPH1-1, RAS-related C3 99.9 4.5E-26 1.6E-30 175.7 14.1 158 18-193 152-328 (332)
111 2f9l_A RAB11B, member RAS onco 99.9 1E-25 3.4E-30 162.1 14.9 157 19-193 3-166 (199)
112 3iev_A GTP-binding protein ERA 99.9 2.2E-25 7.7E-30 170.5 16.3 159 17-193 6-180 (308)
113 2wjg_A FEOB, ferrous iron tran 99.9 8.7E-26 3E-30 160.7 11.6 151 19-193 5-167 (188)
114 2cxx_A Probable GTP-binding pr 99.9 2.9E-26 9.9E-31 163.3 8.9 159 22-193 2-182 (190)
115 3dpu_A RAB family protein; roc 99.9 2E-25 6.9E-30 182.4 13.8 168 4-193 19-206 (535)
116 3c5h_A Glucocorticoid receptor 99.9 8.5E-27 2.9E-31 174.0 5.2 160 18-193 16-253 (255)
117 3a1s_A Iron(II) transport prot 99.9 7E-25 2.4E-29 163.7 13.9 147 19-192 3-164 (258)
118 1wf3_A GTP-binding protein; GT 99.9 1.8E-24 6E-29 164.8 15.5 155 19-193 5-171 (301)
119 1oix_A RAS-related protein RAB 99.9 1.5E-24 5.1E-29 155.1 14.2 156 20-193 28-190 (191)
120 3iby_A Ferrous iron transport 99.9 2.1E-25 7E-30 166.4 9.4 144 22-192 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 4.5E-25 1.5E-29 161.2 10.8 160 19-193 27-209 (223)
122 3i8s_A Ferrous iron transport 99.9 3.4E-25 1.2E-29 166.9 9.2 147 20-193 2-167 (274)
123 2e87_A Hypothetical protein PH 99.9 1.1E-23 3.7E-28 164.2 17.2 156 19-193 165-334 (357)
124 3b1v_A Ferrous iron uptake tra 99.9 1.5E-24 5.1E-29 162.9 11.8 145 21-193 3-162 (272)
125 3k53_A Ferrous iron transport 99.9 4.7E-24 1.6E-28 160.5 14.0 148 20-193 2-164 (271)
126 2hjg_A GTP-binding protein ENG 99.9 7.5E-24 2.6E-28 169.2 15.0 157 20-193 174-347 (436)
127 1xzp_A Probable tRNA modificat 99.9 6.1E-24 2.1E-28 170.7 14.4 149 20-193 242-403 (482)
128 3gee_A MNME, tRNA modification 99.9 5.5E-24 1.9E-28 170.8 14.0 154 19-193 231-396 (476)
129 4dcu_A GTP-binding protein ENG 99.9 5.6E-24 1.9E-28 170.8 12.8 158 19-193 193-367 (456)
130 3sjy_A Translation initiation 99.9 1.8E-23 6E-28 165.5 15.4 160 17-193 4-190 (403)
131 1nrj_B SR-beta, signal recogni 99.9 3.8E-23 1.3E-27 150.5 14.8 173 18-192 9-217 (218)
132 1cip_A Protein (guanine nucleo 99.9 4.7E-24 1.6E-28 165.3 9.6 136 52-193 180-342 (353)
133 1lnz_A SPO0B-associated GTP-bi 99.9 7.2E-24 2.5E-28 163.7 10.5 155 22-193 159-328 (342)
134 3qq5_A Small GTP-binding prote 99.9 7.1E-24 2.4E-28 167.7 10.2 150 20-193 33-194 (423)
135 1mky_A Probable GTP-binding pr 99.9 2.9E-23 1E-27 165.9 13.3 149 22-193 2-164 (439)
136 1s0u_A EIF-2-gamma, translatio 99.9 4.4E-22 1.5E-26 157.7 18.6 158 19-193 6-196 (408)
137 2hjg_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 168.0 8.5 148 22-193 4-163 (436)
138 1ega_A Protein (GTP-binding pr 99.9 2.5E-22 8.5E-27 153.1 14.9 155 19-193 6-173 (301)
139 3izy_P Translation initiation 99.9 5.9E-24 2E-28 172.2 5.6 158 19-193 2-166 (537)
140 1wb1_A Translation elongation 99.9 8.9E-23 3E-27 164.5 12.4 160 19-193 17-187 (482)
141 3geh_A MNME, tRNA modification 99.9 2.6E-23 9E-28 166.3 8.9 149 19-193 222-382 (462)
142 3ohm_A Guanine nucleotide-bind 99.9 1.6E-22 5.6E-27 154.6 11.9 136 51-193 153-316 (327)
143 1mky_A Probable GTP-binding pr 99.9 4.3E-22 1.5E-26 159.1 14.4 157 20-193 179-353 (439)
144 1zcb_A G alpha I/13; GTP-bindi 99.9 9.1E-23 3.1E-27 158.6 10.1 135 53-193 189-351 (362)
145 1kk1_A EIF2gamma; initiation o 99.9 6.7E-22 2.3E-26 156.8 15.2 159 18-193 7-198 (410)
146 4dcu_A GTP-binding protein ENG 99.9 9.2E-23 3.1E-27 163.7 9.4 151 19-193 21-183 (456)
147 3tr5_A RF-3, peptide chain rel 99.9 1.6E-21 5.6E-26 158.3 16.7 113 20-137 12-149 (528)
148 2elf_A Protein translation elo 99.9 2.9E-22 9.9E-27 156.5 11.8 145 23-193 23-178 (370)
149 2xtp_A GTPase IMAP family memb 99.9 3.4E-22 1.2E-26 149.4 11.3 158 18-193 19-206 (260)
150 2qtf_A Protein HFLX, GTP-bindi 99.9 2E-21 6.8E-26 151.4 15.8 160 21-193 178-352 (364)
151 2c78_A Elongation factor TU-A; 99.9 7.2E-22 2.5E-26 156.4 13.4 159 18-193 8-210 (405)
152 1jny_A EF-1-alpha, elongation 99.9 1.1E-22 3.7E-27 162.3 8.7 151 19-185 4-203 (435)
153 3izq_1 HBS1P, elongation facto 99.9 4.7E-22 1.6E-26 164.1 12.3 158 13-185 159-362 (611)
154 3j2k_7 ERF3, eukaryotic polype 99.9 1.1E-21 3.8E-26 156.5 14.0 154 18-187 14-217 (439)
155 2ged_A SR-beta, signal recogni 99.9 6.4E-23 2.2E-27 146.5 6.1 130 19-149 46-183 (193)
156 2aka_B Dynamin-1; fusion prote 99.9 9.7E-22 3.3E-26 149.6 12.7 170 4-191 7-249 (299)
157 3p26_A Elongation factor 1 alp 99.9 8.2E-22 2.8E-26 159.2 12.9 153 18-185 30-228 (483)
158 1d2e_A Elongation factor TU (E 99.9 6.4E-22 2.2E-26 156.2 11.8 157 20-193 2-193 (397)
159 1zo1_I IF2, translation initia 99.9 6.2E-23 2.1E-27 165.0 5.4 160 19-192 2-164 (501)
160 3cb4_D GTP-binding protein LEP 99.9 2.3E-21 7.9E-26 159.2 14.7 154 21-193 4-180 (599)
161 2ywe_A GTP-binding protein LEP 99.9 3.3E-21 1.1E-25 158.0 15.5 155 20-193 5-182 (600)
162 1zun_B Sulfate adenylate trans 99.9 2.1E-21 7.2E-26 154.9 13.9 153 19-185 22-214 (434)
163 4fid_A G protein alpha subunit 99.9 9.6E-22 3.3E-26 150.9 10.0 143 51-193 147-326 (340)
164 2xtz_A Guanine nucleotide-bind 99.9 5.9E-22 2E-26 153.5 8.8 129 64-193 182-343 (354)
165 3lxx_A GTPase IMAP family memb 99.9 2.7E-21 9.4E-26 142.8 11.7 157 18-193 26-212 (239)
166 3lxw_A GTPase IMAP family memb 99.9 7.6E-21 2.6E-25 141.1 12.9 155 18-193 18-206 (247)
167 1g7s_A Translation initiation 99.9 1.6E-21 5.3E-26 160.2 10.0 167 19-192 3-215 (594)
168 3t5d_A Septin-7; GTP-binding p 99.8 4.1E-21 1.4E-25 144.6 9.7 156 20-193 7-202 (274)
169 1f60_A Elongation factor EEF1A 99.8 6.6E-21 2.2E-25 152.8 11.1 152 18-185 4-202 (458)
170 1r5b_A Eukaryotic peptide chai 99.8 2.2E-21 7.7E-26 155.9 7.7 153 18-186 40-243 (467)
171 3avx_A Elongation factor TS, e 99.8 2.6E-20 8.8E-25 160.2 13.5 159 18-193 293-484 (1289)
172 3mca_A HBS1, elongation factor 99.8 3.8E-22 1.3E-26 164.2 1.6 159 19-193 175-395 (592)
173 1jwy_B Dynamin A GTPase domain 99.8 1.2E-19 4.2E-24 139.0 14.9 174 3-193 5-260 (315)
174 2h5e_A Peptide chain release f 99.8 1E-18 3.5E-23 142.0 18.2 114 20-138 12-150 (529)
175 1dar_A EF-G, elongation factor 99.8 7.2E-19 2.4E-23 147.2 16.7 114 19-137 10-144 (691)
176 1pui_A ENGB, probable GTP-bind 99.8 1.7E-19 5.8E-24 130.3 10.2 154 19-193 24-197 (210)
177 1udx_A The GTP-binding protein 99.8 2.4E-19 8.1E-24 141.5 11.5 154 22-193 158-323 (416)
178 3def_A T7I23.11 protein; chlor 99.8 8.4E-19 2.9E-23 131.1 13.7 125 19-144 34-175 (262)
179 2dy1_A Elongation factor G; tr 99.8 2.9E-18 9.9E-23 143.0 17.7 111 20-135 8-139 (665)
180 2qag_A Septin-2, protein NEDD5 99.8 5.3E-20 1.8E-24 143.4 5.5 151 19-192 35-230 (361)
181 2x2e_A Dynamin-1; nitration, h 99.8 1.1E-18 3.8E-23 135.8 10.6 170 3-191 11-254 (353)
182 2j69_A Bacterial dynamin-like 99.8 3E-18 1E-22 143.5 13.6 164 18-193 66-323 (695)
183 2rdo_7 EF-G, elongation factor 99.8 1.5E-17 5.3E-22 139.3 17.6 114 19-137 8-149 (704)
184 1azs_C GS-alpha; complex (lyas 99.8 4.5E-19 1.5E-23 139.0 6.9 133 52-193 204-383 (402)
185 2xex_A Elongation factor G; GT 99.8 2.2E-17 7.6E-22 138.2 17.5 114 19-137 8-142 (693)
186 1wxq_A GTP-binding protein; st 99.8 1.4E-19 4.8E-24 142.4 2.5 80 22-101 1-114 (397)
187 1h65_A Chloroplast outer envel 99.8 2.1E-17 7.3E-22 124.0 13.5 117 19-136 37-168 (270)
188 3t34_A Dynamin-related protein 99.7 8.8E-18 3E-22 131.0 11.1 148 21-188 34-254 (360)
189 3vqt_A RF-3, peptide chain rel 99.7 3.4E-16 1.2E-20 127.8 18.1 110 23-137 33-167 (548)
190 3p32_A Probable GTPase RV1496/ 99.7 1.9E-17 6.6E-22 128.8 10.0 154 18-193 76-282 (355)
191 3l82_B F-box only protein 4; T 99.7 5.5E-17 1.9E-21 115.2 11.0 107 73-193 110-221 (227)
192 1jal_A YCHF protein; nucleotid 99.7 4.1E-16 1.4E-20 120.7 16.1 79 22-100 3-108 (363)
193 1u0l_A Probable GTPase ENGC; p 99.7 2.6E-18 9E-23 130.8 3.0 135 36-192 32-170 (301)
194 2qnr_A Septin-2, protein NEDD5 99.7 3.7E-17 1.3E-21 124.4 7.5 151 19-193 16-212 (301)
195 1yrb_A ATP(GTP)binding protein 99.7 1.7E-16 5.7E-21 118.4 7.0 127 65-193 109-255 (262)
196 2qpt_A EH domain-containing pr 99.6 6.2E-16 2.1E-20 126.4 10.6 114 20-137 64-233 (550)
197 2wsm_A Hydrogenase expression/ 99.6 2.7E-16 9.2E-21 114.4 7.2 147 20-193 29-212 (221)
198 3zvr_A Dynamin-1; hydrolase, D 99.6 6.2E-15 2.1E-19 123.4 16.2 170 5-191 33-274 (772)
199 2www_A Methylmalonic aciduria 99.6 1E-15 3.4E-20 118.8 10.6 109 63-193 165-277 (349)
200 2dby_A GTP-binding protein; GD 99.6 4.3E-15 1.5E-19 115.6 13.5 79 22-100 2-111 (368)
201 2p67_A LAO/AO transport system 99.6 1.6E-16 5.4E-21 123.0 5.5 108 63-192 147-258 (341)
202 2qag_C Septin-7; cell cycle, c 99.6 4.1E-16 1.4E-20 123.2 7.8 151 20-193 30-225 (418)
203 1n0u_A EF-2, elongation factor 99.6 8E-16 2.7E-20 131.3 10.0 122 6-135 7-163 (842)
204 3l2o_B F-box only protein 4; s 99.6 9.8E-16 3.3E-20 113.9 8.7 108 72-193 194-306 (312)
205 3j25_A Tetracycline resistance 99.6 9.9E-16 3.4E-20 127.3 9.4 166 23-193 4-237 (638)
206 4a9a_A Ribosome-interacting GT 99.6 9E-15 3.1E-19 113.8 14.1 110 23-134 74-194 (376)
207 4fn5_A EF-G 1, elongation fact 99.6 1.4E-13 4.9E-18 115.7 16.4 109 23-136 15-151 (709)
208 2hf9_A Probable hydrogenase ni 99.5 1.3E-14 4.4E-19 105.8 7.3 148 19-193 36-222 (226)
209 2qm8_A GTPase/ATPase; G protei 99.5 7.9E-14 2.7E-18 107.6 9.9 161 10-192 43-258 (337)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 1.9E-11 6.5E-16 95.7 17.0 86 15-100 14-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.4 1E-12 3.5E-17 102.7 8.7 89 15-103 16-131 (396)
212 2yv5_A YJEQ protein; hydrolase 99.4 1.1E-12 3.8E-17 99.8 6.8 97 75-192 66-166 (302)
213 2j37_W Signal recognition part 99.1 3.4E-09 1.2E-13 85.5 13.4 162 21-192 101-310 (504)
214 1tq4_A IIGP1, interferon-induc 99.0 1.5E-09 5.2E-14 85.5 10.7 161 20-193 68-251 (413)
215 1puj_A YLQF, conserved hypothe 99.0 7.4E-10 2.5E-14 83.3 6.8 100 69-192 3-103 (282)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 7.3E-11 2.5E-15 92.1 -0.1 108 20-136 161-288 (369)
217 3h2y_A GTPase family protein; 98.9 1.6E-09 5.3E-14 84.6 6.3 101 74-191 55-156 (368)
218 3h2y_A GTPase family protein; 98.9 3.2E-10 1.1E-14 88.4 1.2 124 20-149 159-300 (368)
219 3ec1_A YQEH GTPase; atnos1, at 98.9 3E-09 1E-13 83.0 6.3 102 74-192 57-159 (369)
220 2qag_B Septin-6, protein NEDD5 98.9 4.3E-09 1.5E-13 83.1 6.9 119 12-136 30-190 (427)
221 3sop_A Neuronal-specific septi 98.8 5.7E-09 2E-13 78.0 6.5 109 22-136 3-154 (270)
222 3cnl_A YLQF, putative uncharac 98.7 5.9E-09 2E-13 77.6 2.0 94 72-192 4-98 (262)
223 1puj_A YLQF, conserved hypothe 98.6 3.9E-08 1.3E-12 73.9 6.0 59 18-77 117-177 (282)
224 3cnl_A YLQF, putative uncharac 98.6 8.7E-09 3E-13 76.7 2.2 55 22-77 100-156 (262)
225 2v3c_C SRP54, signal recogniti 98.6 5.5E-08 1.9E-12 77.3 5.6 162 21-192 99-308 (432)
226 1t9h_A YLOQ, probable GTPase E 98.5 4.3E-08 1.5E-12 74.4 3.1 89 81-189 79-171 (307)
227 3dm5_A SRP54, signal recogniti 98.5 2.2E-06 7.5E-11 68.0 12.1 66 64-136 182-253 (443)
228 3szr_A Interferon-induced GTP- 98.5 3.7E-07 1.2E-11 75.7 7.9 24 22-45 46-69 (608)
229 1f5n_A Interferon-induced guan 98.4 4.8E-07 1.6E-11 74.3 6.8 60 18-77 35-103 (592)
230 3kl4_A SRP54, signal recogniti 98.2 7E-06 2.4E-10 65.1 9.3 66 64-136 179-252 (433)
231 1j8m_F SRP54, signal recogniti 98.1 4.4E-05 1.5E-09 57.7 11.9 66 63-136 179-253 (297)
232 2rcn_A Probable GTPase ENGC; Y 98.0 6.9E-06 2.3E-10 63.5 6.0 84 85-189 127-213 (358)
233 1bif_A 6-phosphofructo-2-kinas 97.8 2E-06 6.9E-11 69.1 -1.0 93 19-112 37-143 (469)
234 3tif_A Uncharacterized ABC tra 97.8 3.4E-05 1.2E-09 56.3 5.1 46 13-66 22-68 (235)
235 2pcj_A ABC transporter, lipopr 97.7 4.4E-05 1.5E-09 55.3 5.0 45 14-66 22-67 (224)
236 2onk_A Molybdate/tungstate ABC 97.7 5.4E-05 1.8E-09 55.4 5.3 44 14-65 17-60 (240)
237 3gfo_A Cobalt import ATP-bindi 97.7 5E-05 1.7E-09 56.7 5.0 46 13-66 25-71 (275)
238 1ye8_A Protein THEP1, hypothet 97.7 2.6E-05 8.8E-10 54.5 3.2 23 22-44 1-23 (178)
239 1b0u_A Histidine permease; ABC 97.6 5.8E-05 2E-09 56.0 5.0 46 13-66 23-69 (262)
240 1g6h_A High-affinity branched- 97.6 6.3E-05 2.2E-09 55.6 5.1 46 12-65 23-69 (257)
241 1ji0_A ABC transporter; ATP bi 97.6 7.2E-05 2.5E-09 54.7 5.1 44 14-65 24-68 (240)
242 3fvq_A Fe(3+) IONS import ATP- 97.6 9.8E-05 3.4E-09 57.1 5.9 45 14-66 22-67 (359)
243 1sgw_A Putative ABC transporte 97.6 9.3E-05 3.2E-09 53.2 5.4 36 23-66 37-72 (214)
244 2olj_A Amino acid ABC transpor 97.6 7E-05 2.4E-09 55.6 4.8 45 13-65 41-86 (263)
245 2xxa_A Signal recognition part 97.6 0.00024 8.1E-09 56.5 8.1 66 63-136 182-254 (433)
246 4g1u_C Hemin import ATP-bindin 97.6 5.3E-05 1.8E-09 56.3 4.1 31 14-44 29-60 (266)
247 2ff7_A Alpha-hemolysin translo 97.6 0.00011 3.7E-09 54.1 5.4 43 15-65 28-71 (247)
248 2ixe_A Antigen peptide transpo 97.5 8.4E-05 2.9E-09 55.4 4.7 32 13-44 36-68 (271)
249 1kgd_A CASK, peripheral plasma 97.5 4.1E-05 1.4E-09 53.4 2.8 23 22-44 6-28 (180)
250 1vpl_A ABC transporter, ATP-bi 97.5 0.00012 4E-09 54.1 5.4 31 14-44 33-64 (256)
251 2v9p_A Replication protein E1; 97.5 6.8E-05 2.3E-09 56.8 4.2 35 9-43 113-148 (305)
252 1z6g_A Guanylate kinase; struc 97.5 3.5E-05 1.2E-09 55.5 2.4 36 10-45 11-47 (218)
253 2x8a_A Nuclear valosin-contain 97.5 8E-05 2.7E-09 55.6 4.4 34 10-44 34-67 (274)
254 2yz2_A Putative ABC transporte 97.5 0.00011 3.7E-09 54.6 5.1 45 13-65 24-69 (266)
255 2cbz_A Multidrug resistance-as 97.5 8.7E-05 3E-09 54.2 4.4 31 14-44 23-54 (237)
256 3c8u_A Fructokinase; YP_612366 97.5 0.00013 4.3E-09 52.1 5.2 37 8-44 8-45 (208)
257 4dzz_A Plasmid partitioning pr 97.5 0.001 3.4E-08 46.9 9.9 80 64-148 75-155 (206)
258 2pze_A Cystic fibrosis transme 97.5 0.00011 3.8E-09 53.3 4.9 30 15-44 27-57 (229)
259 1g29_1 MALK, maltose transport 97.5 0.00016 5.6E-09 56.3 6.1 46 14-67 21-67 (372)
260 3tui_C Methionine import ATP-b 97.5 0.00012 4.2E-09 56.7 5.3 44 14-65 46-90 (366)
261 1lvg_A Guanylate kinase, GMP k 97.5 5E-05 1.7E-09 53.9 2.9 23 22-44 5-27 (198)
262 1mv5_A LMRA, multidrug resista 97.5 7.4E-05 2.5E-09 54.8 3.9 32 13-44 19-51 (243)
263 2ihy_A ABC transporter, ATP-bi 97.5 0.00012 3.9E-09 54.9 4.9 31 14-44 39-70 (279)
264 3q5d_A Atlastin-1; G protein, 97.5 0.00017 5.7E-09 57.4 5.9 26 19-44 65-90 (447)
265 3rlf_A Maltose/maltodextrin im 97.5 0.00014 4.7E-09 56.8 5.3 32 14-45 21-53 (381)
266 2qi9_C Vitamin B12 import ATP- 97.5 0.00014 4.9E-09 53.4 5.1 31 14-44 18-49 (249)
267 2yyz_A Sugar ABC transporter, 97.5 0.00015 5E-09 56.2 5.3 33 13-45 20-53 (359)
268 1z47_A CYSA, putative ABC-tran 97.5 0.00015 5.1E-09 56.1 5.3 33 13-45 32-65 (355)
269 1zp6_A Hypothetical protein AT 97.5 7.7E-05 2.6E-09 52.2 3.4 23 22-44 10-32 (191)
270 3ec2_A DNA replication protein 97.5 0.00011 3.9E-09 51.0 4.2 38 6-44 24-61 (180)
271 3tr0_A Guanylate kinase, GMP k 97.5 6.1E-05 2.1E-09 53.4 2.8 22 23-44 9-30 (205)
272 2it1_A 362AA long hypothetical 97.5 0.00016 5.3E-09 56.1 5.3 33 13-45 20-53 (362)
273 3a00_A Guanylate kinase, GMP k 97.5 6.3E-05 2.2E-09 52.7 2.8 21 24-44 4-24 (186)
274 1htw_A HI0065; nucleotide-bind 97.4 0.00012 3.9E-09 50.1 4.0 35 11-45 22-57 (158)
275 1v43_A Sugar-binding transport 97.4 0.00018 6.1E-09 56.0 5.3 33 13-45 28-61 (372)
276 1znw_A Guanylate kinase, GMP k 97.4 7.6E-05 2.6E-09 53.2 2.9 22 23-44 22-43 (207)
277 3nh6_A ATP-binding cassette SU 97.4 0.00013 4.4E-09 55.3 4.0 31 14-44 72-103 (306)
278 2pjz_A Hypothetical protein ST 97.4 0.00025 8.7E-09 52.5 5.5 31 15-45 24-54 (263)
279 1oxx_K GLCV, glucose, ABC tran 97.4 0.00014 4.7E-09 56.3 4.1 46 13-66 22-68 (353)
280 3d31_A Sulfate/molybdate ABC t 97.4 0.00014 4.7E-09 56.1 4.0 33 13-45 17-50 (348)
281 1s96_A Guanylate kinase, GMP k 97.4 9.1E-05 3.1E-09 53.4 2.8 23 23-45 18-40 (219)
282 4gp7_A Metallophosphoesterase; 97.4 8.4E-05 2.9E-09 51.4 2.5 24 19-42 6-30 (171)
283 2bbw_A Adenylate kinase 4, AK4 97.3 0.00014 4.7E-09 53.3 3.6 23 20-42 26-48 (246)
284 3tau_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 51.9 3.6 26 20-45 7-32 (208)
285 2eyu_A Twitching motility prot 97.3 0.00017 5.9E-09 53.4 4.1 33 11-44 16-48 (261)
286 1ixz_A ATP-dependent metallopr 97.3 0.00019 6.6E-09 52.7 4.4 33 11-44 40-72 (254)
287 2j41_A Guanylate kinase; GMP, 97.3 0.00014 4.9E-09 51.4 3.5 25 21-45 6-30 (207)
288 3vaa_A Shikimate kinase, SK; s 97.3 0.00013 4.5E-09 51.6 3.3 33 12-44 15-48 (199)
289 1kag_A SKI, shikimate kinase I 97.3 0.00011 3.9E-09 50.5 2.8 23 22-44 5-27 (173)
290 3lnc_A Guanylate kinase, GMP k 97.3 6.7E-05 2.3E-09 54.4 1.6 36 9-44 14-51 (231)
291 3ney_A 55 kDa erythrocyte memb 97.3 0.00012 4.2E-09 51.8 2.8 24 21-44 19-42 (197)
292 3asz_A Uridine kinase; cytidin 97.3 0.00015 5E-09 51.7 3.1 25 20-44 5-29 (211)
293 2bbs_A Cystic fibrosis transme 97.3 0.00025 8.5E-09 53.4 4.4 31 14-44 56-87 (290)
294 2qor_A Guanylate kinase; phosp 97.3 0.00015 5.3E-09 51.4 3.1 24 21-44 12-35 (204)
295 2bdt_A BH3686; alpha-beta prot 97.3 0.00014 5E-09 50.8 2.9 21 23-43 4-24 (189)
296 4eun_A Thermoresistant glucoki 97.3 0.00018 6.1E-09 50.9 3.4 25 20-44 28-52 (200)
297 2ghi_A Transport protein; mult 97.3 0.0003 1E-08 52.1 4.6 32 13-44 37-69 (260)
298 2jeo_A Uridine-cytidine kinase 97.3 0.00018 6.3E-09 52.6 3.4 33 11-43 14-47 (245)
299 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5.1E-09 49.7 2.8 22 23-44 3-24 (173)
300 1ex7_A Guanylate kinase; subst 97.3 0.00017 5.7E-09 50.7 3.0 21 24-44 4-24 (186)
301 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 7E-09 50.6 3.4 24 21-44 18-41 (202)
302 1ly1_A Polynucleotide kinase; 97.2 0.00018 6E-09 49.7 3.0 21 23-43 4-24 (181)
303 1iy2_A ATP-dependent metallopr 97.2 0.0003 1E-08 52.4 4.4 33 11-44 64-96 (278)
304 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.1E-09 51.1 3.4 22 22-43 1-22 (216)
305 3lw7_A Adenylate kinase relate 97.2 0.00021 7.2E-09 49.0 3.2 19 23-41 3-21 (179)
306 2p5t_B PEZT; postsegregational 97.2 0.00025 8.6E-09 52.2 3.8 34 11-44 22-55 (253)
307 1gvn_B Zeta; postsegregational 97.2 0.00039 1.3E-08 52.2 4.8 24 20-43 32-55 (287)
308 1aky_A Adenylate kinase; ATP:A 97.2 0.00022 7.6E-09 51.2 3.4 25 20-44 3-27 (220)
309 2ffh_A Protein (FFH); SRP54, s 97.2 0.00058 2E-08 54.1 6.0 67 63-136 179-251 (425)
310 3end_A Light-independent proto 97.2 0.0028 9.5E-08 47.8 9.6 68 65-134 157-225 (307)
311 3dl0_A Adenylate kinase; phosp 97.2 0.00022 7.7E-09 50.9 3.4 22 22-43 1-22 (216)
312 3cwq_A Para family chromosome 97.2 0.0035 1.2E-07 44.6 9.6 79 64-148 67-146 (209)
313 2f1r_A Molybdopterin-guanine d 97.2 7.1E-05 2.4E-09 51.9 0.6 51 23-78 4-54 (171)
314 3sr0_A Adenylate kinase; phosp 97.2 0.00022 7.6E-09 50.9 3.2 23 22-44 1-23 (206)
315 3trf_A Shikimate kinase, SK; a 97.2 0.00024 8.1E-09 49.4 3.3 24 21-44 5-28 (185)
316 2rcn_A Probable GTPase ENGC; Y 97.2 0.00018 6E-09 55.7 2.7 26 21-46 215-240 (358)
317 1cke_A CK, MSSA, protein (cyti 97.2 0.00024 8.3E-09 51.1 3.3 23 22-44 6-28 (227)
318 1knq_A Gluconate kinase; ALFA/ 97.2 0.00025 8.7E-09 48.9 3.3 23 22-44 9-31 (175)
319 1y63_A LMAJ004144AAA protein; 97.2 0.0003 1E-08 49.1 3.6 25 20-44 9-33 (184)
320 3tlx_A Adenylate kinase 2; str 97.2 0.00027 9.1E-09 51.7 3.4 25 19-43 27-51 (243)
321 2if2_A Dephospho-COA kinase; a 97.2 0.00025 8.5E-09 50.2 3.2 21 23-43 3-23 (204)
322 1tue_A Replication protein E1; 97.1 0.00045 1.5E-08 49.1 4.4 23 22-44 59-81 (212)
323 3b5x_A Lipid A export ATP-bind 97.1 0.00029 1E-08 58.1 3.9 34 11-44 358-392 (582)
324 3uie_A Adenylyl-sulfate kinase 97.1 0.00027 9.4E-09 50.0 3.3 25 20-44 24-48 (200)
325 2rhm_A Putative kinase; P-loop 97.1 0.00028 9.4E-09 49.3 3.3 23 21-43 5-27 (193)
326 3b85_A Phosphate starvation-in 97.1 0.00019 6.5E-09 51.3 2.4 23 22-44 23-45 (208)
327 1qhx_A CPT, protein (chloramph 97.1 0.00029 1E-08 48.6 3.3 23 22-44 4-26 (178)
328 1kht_A Adenylate kinase; phosp 97.1 0.00029 9.8E-09 49.1 3.3 22 22-43 4-25 (192)
329 2cdn_A Adenylate kinase; phosp 97.1 0.00038 1.3E-08 49.1 3.9 26 18-43 17-42 (201)
330 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00026 9E-09 52.0 3.1 31 14-44 21-52 (250)
331 3cm0_A Adenylate kinase; ATP-b 97.1 0.00027 9.2E-09 49.2 3.0 23 21-43 4-26 (186)
332 2i3b_A HCR-ntpase, human cance 97.1 0.00025 8.5E-09 49.9 2.7 22 23-44 3-24 (189)
333 1zd8_A GTP:AMP phosphotransfer 97.1 0.00034 1.1E-08 50.5 3.4 24 20-43 6-29 (227)
334 2zu0_C Probable ATP-dependent 97.1 0.00028 9.7E-09 52.4 3.1 31 14-44 38-69 (267)
335 2jaq_A Deoxyguanosine kinase; 97.1 0.00031 1.1E-08 49.5 3.1 22 23-44 2-23 (205)
336 1jjv_A Dephospho-COA kinase; P 97.1 0.00032 1.1E-08 49.7 3.1 22 23-44 4-25 (206)
337 1e4v_A Adenylate kinase; trans 97.1 0.00036 1.2E-08 49.8 3.3 22 22-43 1-22 (214)
338 1nks_A Adenylate kinase; therm 97.1 0.00029 1E-08 49.1 2.8 21 23-43 3-23 (194)
339 2c95_A Adenylate kinase 1; tra 97.1 0.00043 1.5E-08 48.5 3.7 24 20-43 8-31 (196)
340 1zak_A Adenylate kinase; ATP:A 97.1 0.00035 1.2E-08 50.2 3.3 25 20-44 4-28 (222)
341 2v54_A DTMP kinase, thymidylat 97.1 0.00043 1.5E-08 48.8 3.6 25 20-44 3-27 (204)
342 2w58_A DNAI, primosome compone 97.1 0.0011 3.6E-08 46.8 5.7 23 22-44 55-77 (202)
343 2nq2_C Hypothetical ABC transp 97.0 0.0003 1E-08 51.9 2.8 32 14-45 23-55 (253)
344 2ehv_A Hypothetical protein PH 97.0 0.00034 1.2E-08 50.9 3.0 22 21-42 30-51 (251)
345 2plr_A DTMP kinase, probable t 97.0 0.00037 1.3E-08 49.4 3.1 23 21-43 4-26 (213)
346 2qt1_A Nicotinamide riboside k 97.0 0.00043 1.5E-08 49.1 3.5 25 20-44 20-44 (207)
347 4a74_A DNA repair and recombin 97.0 0.00033 1.1E-08 50.3 2.9 27 18-44 21-48 (231)
348 1tev_A UMP-CMP kinase; ploop, 97.0 0.00039 1.3E-08 48.5 3.2 23 21-43 3-25 (196)
349 2wwf_A Thymidilate kinase, put 97.0 0.00045 1.5E-08 49.1 3.5 24 20-43 9-32 (212)
350 1nn5_A Similar to deoxythymidy 97.0 0.00049 1.7E-08 48.9 3.7 24 20-43 8-31 (215)
351 3b60_A Lipid A export ATP-bind 97.0 0.001 3.5E-08 54.9 6.0 30 15-44 362-392 (582)
352 1u0l_A Probable GTPase ENGC; p 97.0 0.0004 1.4E-08 52.5 3.4 25 22-46 170-194 (301)
353 3te6_A Regulatory protein SIR3 97.0 0.0017 5.9E-08 49.4 6.8 27 18-44 42-68 (318)
354 1jbk_A CLPB protein; beta barr 97.0 0.00093 3.2E-08 46.1 5.0 25 20-44 42-66 (195)
355 3aez_A Pantothenate kinase; tr 97.0 0.00039 1.3E-08 52.8 3.2 25 19-43 88-112 (312)
356 1uf9_A TT1252 protein; P-loop, 97.0 0.00042 1.4E-08 48.8 3.2 26 19-44 6-31 (203)
357 4e22_A Cytidylate kinase; P-lo 97.0 0.00057 2E-08 50.2 3.9 24 19-42 25-48 (252)
358 1odf_A YGR205W, hypothetical 3 97.0 0.00076 2.6E-08 50.7 4.6 25 19-43 29-53 (290)
359 2pt5_A Shikimate kinase, SK; a 97.0 0.00045 1.5E-08 47.2 3.1 21 23-43 2-22 (168)
360 3iij_A Coilin-interacting nucl 97.0 0.00051 1.7E-08 47.6 3.4 25 20-44 10-34 (180)
361 1via_A Shikimate kinase; struc 97.0 0.00039 1.3E-08 48.0 2.7 22 23-44 6-27 (175)
362 2yl4_A ATP-binding cassette SU 97.0 0.00072 2.5E-08 55.9 4.7 31 14-44 362-393 (595)
363 1svm_A Large T antigen; AAA+ f 97.0 0.00076 2.6E-08 52.6 4.5 37 8-44 155-192 (377)
364 3gd7_A Fusion complex of cysti 97.0 0.00081 2.8E-08 52.7 4.7 32 13-44 38-70 (390)
365 1np6_A Molybdopterin-guanine d 97.0 0.00044 1.5E-08 48.0 2.8 22 23-44 8-29 (174)
366 2gza_A Type IV secretion syste 97.0 0.0007 2.4E-08 52.5 4.2 32 13-44 166-198 (361)
367 2yv5_A YJEQ protein; hydrolase 97.0 0.00044 1.5E-08 52.3 3.0 23 22-45 166-188 (302)
368 3qf4_B Uncharacterized ABC tra 96.9 0.00083 2.9E-08 55.6 4.9 43 14-64 373-416 (598)
369 2kjq_A DNAA-related protein; s 96.9 0.00081 2.8E-08 45.4 4.0 25 20-44 35-59 (149)
370 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00055 1.9E-08 52.4 3.5 35 11-45 160-195 (330)
371 1ak2_A Adenylate kinase isoenz 96.9 0.00058 2E-08 49.5 3.5 27 18-44 13-39 (233)
372 3be4_A Adenylate kinase; malar 96.9 0.00051 1.8E-08 49.2 3.2 25 20-44 4-28 (217)
373 1t9h_A YLOQ, probable GTPase E 96.9 0.00015 5E-09 55.0 0.2 25 21-45 173-197 (307)
374 1p9r_A General secretion pathw 96.9 0.0007 2.4E-08 53.5 4.1 33 11-44 158-190 (418)
375 3tqc_A Pantothenate kinase; bi 96.9 0.00055 1.9E-08 52.2 3.3 25 19-43 90-114 (321)
376 4a82_A Cystic fibrosis transme 96.9 0.00068 2.3E-08 55.9 4.0 43 14-64 359-402 (578)
377 2bwj_A Adenylate kinase 5; pho 96.9 0.00061 2.1E-08 47.8 3.3 24 21-44 12-35 (199)
378 2yvu_A Probable adenylyl-sulfa 96.9 0.00063 2.1E-08 47.4 3.3 25 20-44 12-36 (186)
379 2xb4_A Adenylate kinase; ATP-b 96.9 0.00062 2.1E-08 49.0 3.3 21 23-43 2-22 (223)
380 1rz3_A Hypothetical protein rb 96.9 0.00063 2.2E-08 48.1 3.3 24 20-43 21-44 (201)
381 1ukz_A Uridylate kinase; trans 96.9 0.00074 2.5E-08 47.6 3.6 23 21-43 15-37 (203)
382 2pbr_A DTMP kinase, thymidylat 96.9 0.00064 2.2E-08 47.4 3.2 21 23-43 2-22 (195)
383 1lw7_A Transcriptional regulat 96.9 0.00044 1.5E-08 53.7 2.4 25 21-45 170-194 (365)
384 2vli_A Antibiotic resistance p 96.8 0.00051 1.8E-08 47.6 2.5 23 21-43 5-27 (183)
385 3jvv_A Twitching mobility prot 96.8 0.00066 2.3E-08 52.5 3.3 26 19-44 121-146 (356)
386 2iyv_A Shikimate kinase, SK; t 96.8 0.00062 2.1E-08 47.3 2.9 21 23-43 4-24 (184)
387 2pez_A Bifunctional 3'-phospho 96.8 0.0007 2.4E-08 46.8 3.1 24 20-43 4-27 (179)
388 1nij_A Hypothetical protein YJ 96.8 0.00041 1.4E-08 52.8 2.0 22 24-45 7-28 (318)
389 3umf_A Adenylate kinase; rossm 96.8 0.00077 2.6E-08 48.5 3.3 25 20-44 27-52 (217)
390 2z0h_A DTMP kinase, thymidylat 96.8 0.00075 2.6E-08 47.2 3.2 22 23-44 2-23 (197)
391 1sq5_A Pantothenate kinase; P- 96.8 0.00071 2.4E-08 51.3 3.2 25 20-44 79-103 (308)
392 3r20_A Cytidylate kinase; stru 96.8 0.00087 3E-08 48.7 3.4 26 19-44 7-32 (233)
393 2p65_A Hypothetical protein PF 96.8 0.0012 4.1E-08 45.4 4.1 26 19-44 41-66 (187)
394 2ze6_A Isopentenyl transferase 96.8 0.00068 2.3E-08 49.9 2.8 22 23-44 3-24 (253)
395 3bos_A Putative DNA replicatio 96.8 0.0014 4.8E-08 47.1 4.5 25 20-44 51-75 (242)
396 1vht_A Dephospho-COA kinase; s 96.8 0.00078 2.7E-08 48.2 3.1 23 21-43 4-26 (218)
397 1e6c_A Shikimate kinase; phosp 96.8 0.00074 2.5E-08 46.3 2.8 22 23-44 4-25 (173)
398 2oap_1 GSPE-2, type II secreti 96.8 0.001 3.6E-08 53.9 4.0 25 20-44 259-283 (511)
399 1rj9_A FTSY, signal recognitio 96.8 0.001 3.5E-08 50.4 3.7 23 21-43 102-124 (304)
400 1qf9_A UMP/CMP kinase, protein 96.8 0.00089 3E-08 46.6 3.2 22 22-43 7-28 (194)
401 1zuh_A Shikimate kinase; alpha 96.8 0.00088 3E-08 45.8 3.1 21 23-43 9-29 (168)
402 3k9g_A PF-32 protein; ssgcid, 96.7 0.04 1.4E-06 40.4 12.2 77 65-148 145-221 (267)
403 3n70_A Transport activator; si 96.7 0.0016 5.5E-08 43.5 4.2 26 19-44 22-47 (145)
404 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.00094 3.2E-08 49.3 3.3 22 22-43 5-26 (260)
405 1in4_A RUVB, holliday junction 96.7 0.00093 3.2E-08 51.2 3.2 23 22-44 52-74 (334)
406 2ewv_A Twitching motility prot 96.7 0.00093 3.2E-08 52.0 3.3 25 20-44 135-159 (372)
407 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0017 5.7E-08 50.1 4.5 43 1-43 1-46 (359)
408 1lv7_A FTSH; alpha/beta domain 96.7 0.0011 3.9E-08 48.6 3.5 24 21-44 45-68 (257)
409 1gtv_A TMK, thymidylate kinase 96.7 0.00034 1.2E-08 49.8 0.6 22 23-44 2-23 (214)
410 3b9q_A Chloroplast SRP recepto 96.7 0.00085 2.9E-08 50.7 2.8 22 23-44 102-123 (302)
411 1xjc_A MOBB protein homolog; s 96.7 0.0012 4E-08 45.6 3.3 22 23-44 6-27 (169)
412 3uc9_A Increased recombination 96.7 0.0064 2.2E-07 43.8 7.2 89 18-109 24-123 (233)
413 3qf4_A ABC transporter, ATP-bi 96.7 0.0017 5.8E-08 53.6 4.6 22 23-44 371-392 (587)
414 1njg_A DNA polymerase III subu 96.7 0.0019 6.5E-08 46.2 4.5 23 22-44 46-68 (250)
415 3e70_C DPA, signal recognition 96.7 0.0011 3.8E-08 50.7 3.3 65 65-136 212-282 (328)
416 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00099 3.4E-08 47.8 2.9 24 20-43 22-45 (235)
417 2f6r_A COA synthase, bifunctio 96.7 0.0013 4.5E-08 49.1 3.6 24 20-43 74-97 (281)
418 2vp4_A Deoxynucleoside kinase; 96.6 0.00092 3.1E-08 48.4 2.7 24 21-44 20-43 (230)
419 2yhs_A FTSY, cell division pro 96.6 0.00091 3.1E-08 53.8 2.8 21 23-43 295-315 (503)
420 3vfd_A Spastin; ATPase, microt 96.6 0.0077 2.6E-07 47.0 7.9 26 19-44 146-171 (389)
421 1m7g_A Adenylylsulfate kinase; 96.6 0.0013 4.5E-08 46.8 3.3 25 20-44 24-48 (211)
422 3b9p_A CG5977-PA, isoform A; A 96.6 0.0014 4.7E-08 49.1 3.5 26 19-44 52-77 (297)
423 2chg_A Replication factor C sm 96.6 0.0025 8.7E-08 45.0 4.7 22 23-44 40-61 (226)
424 1uj2_A Uridine-cytidine kinase 96.6 0.0014 4.7E-08 48.1 3.3 24 20-43 21-44 (252)
425 4eaq_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 47.5 3.2 25 20-44 25-49 (229)
426 1cr0_A DNA primase/helicase; R 96.6 0.0015 5E-08 49.0 3.5 30 15-44 28-58 (296)
427 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.3E-08 46.4 2.9 25 20-44 11-35 (192)
428 3kta_A Chromosome segregation 96.6 0.0013 4.5E-08 45.5 3.0 23 21-43 26-48 (182)
429 3gmt_A Adenylate kinase; ssgci 96.6 0.0014 4.7E-08 47.5 3.1 25 20-44 7-31 (230)
430 3nwj_A ATSK2; P loop, shikimat 96.6 0.0012 4E-08 48.6 2.8 33 11-43 34-70 (250)
431 2zan_A Vacuolar protein sortin 96.6 0.017 5.9E-07 45.9 9.6 26 19-44 165-190 (444)
432 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0012 4E-08 52.9 2.8 25 20-44 137-161 (460)
433 2og2_A Putative signal recogni 96.5 0.0019 6.5E-08 50.0 3.9 22 23-44 159-180 (359)
434 1q3t_A Cytidylate kinase; nucl 96.5 0.0018 6.1E-08 47.0 3.5 27 17-43 12-38 (236)
435 3t15_A Ribulose bisphosphate c 96.5 0.0017 5.8E-08 48.8 3.5 26 19-44 34-59 (293)
436 3syl_A Protein CBBX; photosynt 96.5 0.0019 6.6E-08 48.5 3.8 25 19-43 65-89 (309)
437 1sxj_E Activator 1 40 kDa subu 96.5 0.0019 6.6E-08 49.5 3.8 20 24-43 39-58 (354)
438 2dpy_A FLII, flagellum-specifi 96.5 0.002 6.9E-08 51.2 3.9 34 11-45 147-181 (438)
439 2cvh_A DNA repair and recombin 96.5 0.0023 7.9E-08 45.5 3.9 25 19-43 18-42 (220)
440 3h4m_A Proteasome-activating n 96.5 0.0019 6.4E-08 48.0 3.5 26 19-44 49-74 (285)
441 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.002 7E-08 47.1 3.5 25 20-44 38-62 (262)
442 3ozx_A RNAse L inhibitor; ATP 96.5 0.0024 8.1E-08 52.2 4.1 23 23-45 296-318 (538)
443 4f4c_A Multidrug resistance pr 96.5 0.0016 5.6E-08 58.6 3.5 25 20-44 1104-1128(1321)
444 4b4t_M 26S protease regulatory 96.4 0.003 1E-07 50.1 4.6 33 11-44 206-238 (434)
445 4b4t_K 26S protease regulatory 96.4 0.0033 1.1E-07 49.8 4.7 34 10-44 196-229 (428)
446 1a7j_A Phosphoribulokinase; tr 96.4 0.0011 3.7E-08 49.9 1.9 25 19-43 3-27 (290)
447 1sxj_C Activator 1 40 kDa subu 96.4 0.0029 9.8E-08 48.5 4.3 21 24-44 49-69 (340)
448 3ozx_A RNAse L inhibitor; ATP 96.4 0.0011 3.8E-08 54.1 2.1 24 23-46 27-50 (538)
449 2obl_A ESCN; ATPase, hydrolase 96.4 0.0017 5.9E-08 50.0 3.0 25 20-44 70-94 (347)
450 1fnn_A CDC6P, cell division co 96.4 0.0033 1.1E-07 48.6 4.7 22 23-44 46-67 (389)
451 1n0w_A DNA repair protein RAD5 96.4 0.0017 5.9E-08 46.9 2.8 25 20-44 23-47 (243)
452 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.5E-08 48.5 3.2 21 23-43 4-24 (301)
453 3cf0_A Transitional endoplasmi 96.4 0.0022 7.7E-08 48.3 3.5 26 19-44 47-72 (301)
454 4b4t_L 26S protease subunit RP 96.4 0.0036 1.2E-07 49.7 4.7 34 10-44 205-238 (437)
455 4f4c_A Multidrug resistance pr 96.4 0.0036 1.2E-07 56.4 5.2 43 14-64 436-479 (1321)
456 2qby_B CDC6 homolog 3, cell di 96.4 0.0042 1.4E-07 48.0 5.0 26 19-44 43-68 (384)
457 4b4t_J 26S protease regulatory 96.4 0.0033 1.1E-07 49.3 4.4 35 9-44 171-205 (405)
458 2px0_A Flagellar biosynthesis 96.4 0.0058 2E-07 46.0 5.5 110 20-136 104-253 (296)
459 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0022 7.6E-08 52.4 3.3 24 22-45 48-71 (538)
460 4fcw_A Chaperone protein CLPB; 96.3 0.0058 2E-07 45.9 5.4 23 22-44 48-70 (311)
461 3euj_A Chromosome partition pr 96.3 0.0019 6.6E-08 51.9 2.8 30 15-44 23-52 (483)
462 1sxj_D Activator 1 41 kDa subu 96.3 0.0045 1.5E-07 47.3 4.8 22 23-44 60-81 (353)
463 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.003 1E-07 48.1 3.8 26 19-44 43-68 (322)
464 2qgz_A Helicase loader, putati 96.3 0.0065 2.2E-07 46.0 5.6 36 8-44 140-175 (308)
465 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0026 8.9E-08 42.8 3.0 20 23-42 25-44 (149)
466 2qby_A CDC6 homolog 1, cell di 96.3 0.0027 9.4E-08 48.9 3.5 26 19-44 43-68 (386)
467 3ake_A Cytidylate kinase; CMP 96.3 0.0024 8.3E-08 45.0 2.9 21 23-43 4-24 (208)
468 3g5u_A MCG1178, multidrug resi 96.3 0.0043 1.5E-07 55.8 5.0 36 21-64 416-451 (1284)
469 1ofh_A ATP-dependent HSL prote 96.2 0.0028 9.5E-08 47.5 3.2 25 20-44 49-73 (310)
470 2v1u_A Cell division control p 96.2 0.0035 1.2E-07 48.4 3.8 26 19-44 42-67 (387)
471 2r62_A Cell division protease 96.2 0.0023 8E-08 47.1 2.6 23 22-44 45-67 (268)
472 3m6a_A ATP-dependent protease 96.2 0.0045 1.6E-07 50.6 4.5 33 12-44 99-131 (543)
473 2ce7_A Cell division protein F 96.2 0.0038 1.3E-07 50.2 4.0 24 21-44 49-72 (476)
474 3j16_B RLI1P; ribosome recycli 96.2 0.0026 8.9E-08 52.7 3.1 25 22-46 104-128 (608)
475 1d2n_A N-ethylmaleimide-sensit 96.2 0.0028 9.6E-08 46.9 3.0 26 19-44 62-87 (272)
476 1nlf_A Regulatory protein REPA 96.2 0.0027 9.2E-08 47.2 2.9 22 22-43 31-52 (279)
477 3eie_A Vacuolar protein sortin 96.2 0.0038 1.3E-07 47.4 3.8 26 19-44 49-74 (322)
478 1p5z_B DCK, deoxycytidine kina 96.1 0.002 6.7E-08 47.5 2.0 27 18-44 21-47 (263)
479 1l8q_A Chromosomal replication 96.1 0.0028 9.7E-08 48.1 2.8 24 21-44 37-60 (324)
480 3co5_A Putative two-component 96.1 0.0023 7.8E-08 42.7 2.0 26 19-44 25-50 (143)
481 4b4t_H 26S protease regulatory 96.1 0.0053 1.8E-07 48.9 4.3 34 10-44 233-266 (467)
482 2dhr_A FTSH; AAA+ protein, hex 96.1 0.0029 9.8E-08 51.2 2.8 23 22-44 65-87 (499)
483 3uk6_A RUVB-like 2; hexameric 96.1 0.0079 2.7E-07 46.3 5.2 24 21-44 70-93 (368)
484 1pzn_A RAD51, DNA repair and r 96.1 0.0055 1.9E-07 47.2 4.2 30 15-44 124-154 (349)
485 2iw3_A Elongation factor 3A; a 96.0 0.0039 1.3E-07 54.2 3.5 22 23-44 701-722 (986)
486 2h92_A Cytidylate kinase; ross 96.0 0.0039 1.3E-07 44.4 3.0 24 21-44 3-26 (219)
487 3u61_B DNA polymerase accessor 96.0 0.057 1.9E-06 40.8 9.6 22 23-44 50-71 (324)
488 3zvl_A Bifunctional polynucleo 96.0 0.0046 1.6E-07 48.9 3.6 23 22-44 259-281 (416)
489 3bk7_A ABC transporter ATP-bin 96.0 0.0036 1.2E-07 51.9 3.1 25 22-46 118-142 (607)
490 2ocp_A DGK, deoxyguanosine kin 96.0 0.0041 1.4E-07 45.1 3.1 23 22-44 3-25 (241)
491 4b4t_I 26S protease regulatory 96.0 0.0073 2.5E-07 47.7 4.6 33 11-44 207-239 (437)
492 3crm_A TRNA delta(2)-isopenten 96.0 0.0043 1.5E-07 47.3 3.2 22 23-44 7-28 (323)
493 3pxg_A Negative regulator of g 96.0 0.0064 2.2E-07 48.8 4.4 26 19-44 199-224 (468)
494 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0042 1.4E-07 50.7 3.3 23 23-45 314-336 (538)
495 2dr3_A UPF0273 protein PH0284; 96.0 0.0042 1.4E-07 44.9 3.0 28 16-43 17-45 (247)
496 3qf7_A RAD50; ABC-ATPase, ATPa 96.0 0.004 1.4E-07 48.3 3.0 20 23-42 25-44 (365)
497 3hws_A ATP-dependent CLP prote 96.0 0.0051 1.8E-07 47.5 3.6 25 20-44 50-74 (363)
498 1um8_A ATP-dependent CLP prote 95.9 0.0042 1.4E-07 48.2 3.1 26 19-44 70-95 (376)
499 2qmh_A HPR kinase/phosphorylas 95.9 0.0049 1.7E-07 43.6 3.1 25 20-44 33-57 (205)
500 3bk7_A ABC transporter ATP-bin 95.9 0.004 1.4E-07 51.6 3.1 23 23-45 384-406 (607)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=1.4e-37 Score=224.26 Aligned_cols=194 Identities=62% Similarity=1.057 Sum_probs=149.2
Q ss_pred CccHHHH----HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 1 MFEIWTK----FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 1 ~~~~~~~----~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
|++++.| +++.+..+++..+..+|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp ------------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC--
T ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcH
Confidence 6778888 888999999889999999999999999999999999988888899999999999999999999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~ 156 (194)
+++..+..+++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++........
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
T 1f6b_A 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 160 (198)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCS
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999998876555789999999999998877888888887653311111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+...........+++++|||++|+|++++|++|.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 11111111234578999999999999999999998764
No 2
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=1.2e-35 Score=212.76 Aligned_cols=185 Identities=61% Similarity=1.019 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++.++++.++.+++..++.+|+++|++|||||||++++.+..+..+.+|.+.+...+.+++..+.+||+||+++++..+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 85 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 85 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 56677888888888899999999999999999999999999988889999999999999999999999999999999989
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++.+|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++... ....+. -
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~----~ 160 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR----I 160 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-------C
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc----c
Confidence 99999999999999999999999999999988765557899999999999988777888888776532 111110 0
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++|||++|.|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 123457899999999999999999998864
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2e-34 Score=205.66 Aligned_cols=164 Identities=26% Similarity=0.555 Sum_probs=141.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+.++|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++++...+..+++++|++++|+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 36789999999999999999999998888888899999888999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.... .....+.++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCAL 160 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhh------------hcCCCcEEEEccCC
Confidence 999999999999999998764456899999999999988777788877765432 23344789999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.|++++|++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998865
No 4
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=1.2e-34 Score=206.48 Aligned_cols=163 Identities=29% Similarity=0.549 Sum_probs=143.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++.+.....+.||.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 67899999999999999999999988866888999988888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....|+..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVT 163 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh------------ccCCceEEEEeeCCC
Confidence 99999999999999988765557899999999999988777777777665422 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 164 ~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDI 178 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998865
No 5
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.3e-34 Score=203.11 Aligned_cols=163 Identities=33% Similarity=0.622 Sum_probs=143.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998888888999988888899999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....|+..++......+.|+++++||+|+.+....+++.+.+.... .....+++++|||++
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSALT 161 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchh------------ccCCceEEEEccCCC
Confidence 99999999999998887655557899999999999988767777777664322 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNV 176 (181)
T ss_dssp CTTHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998875
No 6
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=1.5e-34 Score=206.52 Aligned_cols=163 Identities=36% Similarity=0.585 Sum_probs=144.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.++++|+++|++|||||||++++....+..+.||.+.....+..++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 58899999999999999999999988888888899988888999999999999999999998888899999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSS------------IMNRTWTIVKSSSKT 167 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhh------------ccCCceEEEEccCCC
Confidence 99999999999999998776667899999999999988777777777665432 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 168 ~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 168 GDGLVEGMDWLVERL 182 (189)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999998865
No 7
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=4.7e-34 Score=199.29 Aligned_cols=160 Identities=33% Similarity=0.593 Sum_probs=141.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
++|+++|++|||||||++++.+..+..+.||.+.....+..++..+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 48999999999999999999998888888899988888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
+++.....|+..++.....++.|+++|+||+|+.+....+++...+.... .....+++++|||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDG 148 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc------------ccCccEEEEEcccCCCcC
Confidence 99999999999988765557899999999999988767777777665432 233457899999999999
Q ss_pred hHHHHHHHhhhc
Q psy2159 182 FGNGFRWLANYI 193 (194)
Q Consensus 182 v~~l~~~l~~~i 193 (194)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (164)
T 1r8s_A 149 LYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 8
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1e-33 Score=198.76 Aligned_cols=163 Identities=31% Similarity=0.564 Sum_probs=144.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999999888888999988888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....++..++......+.|+++|+||+|+.+....+++...+.... .....++++++||++
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATK 152 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchh------------ccCCceEEEECcCCC
Confidence 99999999999999988765557899999999999988767777777665432 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 153 ~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 153 GTGLDEAMEWLVETL 167 (171)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998865
No 9
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=1.4e-34 Score=207.56 Aligned_cols=170 Identities=32% Similarity=0.575 Sum_probs=142.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+++.+ ...+.++|+++|++|||||||++++....+..+.||.+.....+..++..+.+||+||++++...+..+++.+|
T Consensus 20 ~~~~~-~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRI-FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGT-TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHh-ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 34444 35678999999999999999999999988888888999888888899999999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.... .....++
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~ 166 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH------------LRSRTWY 166 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceE
Confidence 9999999999999999999999988765556899999999999988767777777765433 3334578
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||++|.|++++|++|.+.+
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEECcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999876
No 10
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-34 Score=202.98 Aligned_cols=175 Identities=31% Similarity=0.524 Sum_probs=147.1
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhh
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF 86 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 86 (194)
.++.+++.+-...++++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++++...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp HHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 35555555422268899999999999999999999988888888999988888999999999999999999999899999
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.... ...
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~ 151 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE------------LKD 151 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT------------CCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccC
Confidence 99999999999999999999999999998765567899999999999988777788877775433 233
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 457899999999999999999998765
No 11
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=1.1e-33 Score=200.97 Aligned_cols=165 Identities=26% Similarity=0.546 Sum_probs=143.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...+.++|+++|.+|||||||++++.+..+..+.+|.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 45678899999999999999999999999988889999998899999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....++..++......+.|+++|+||+|+......+++.+.+.... .....+.++++||
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa 164 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCA 164 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccc------------ccCCceEEEEccC
Confidence 9999999999999999988754457899999999999988777788877765432 2334478999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|++|.+.+
T Consensus 165 ~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTTBTHHHHHHHHHTC-
T ss_pred CCCcCHHHHHHHHHhhC
Confidence 99999999999998764
No 12
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.2e-34 Score=211.21 Aligned_cols=158 Identities=23% Similarity=0.261 Sum_probs=128.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.+||+++|.+|||||||++++..+.|. .+.||++.+. ..+..++ +.+.+|||+|++++..+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 357789999999999999999999999887 6788888764 3444454 7899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++++|..+..|+..+.... .++.|++||+||+|+.+ .++.++..++.+... +.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~ 151 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-----------------VM 151 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-----------------Ce
Confidence 99999999999999999999887643 36789999999999865 567888887776654 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|++|||++|.||+++|+.|.+.+
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998865
No 13
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3.7e-33 Score=199.35 Aligned_cols=164 Identities=29% Similarity=0.513 Sum_probs=143.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++.++|+++|++|||||||++++.+..+. .+.+|.+.+...+...+..+.+||+||++++...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 456789999999999999999999988876 6788999988888889999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....|+..++......+.|+++|+||+|+......+++.+.+.... .....+.++++||
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA 166 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISC 166 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh------------hccCCeeEEEEEC
Confidence 9999999999999999987764457899999999999988766777776665432 2234578999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|++|.+.+
T Consensus 167 ~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTCTTHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999876
No 14
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=197.00 Aligned_cols=165 Identities=33% Similarity=0.588 Sum_probs=141.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCC--CCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
...+.++|+++|++|||||||++++.+.. ...+.+|.+.....+.+++..+.+||+||++++...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 44678899999999999999999999887 3467889998888899999999999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCC--CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDAL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++.....++..++..... .+.|+++|+||+|+.+....+++.+.+.... .....+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 164 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLEN------------IKDKPWHIC 164 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhh------------ccCCceEEE
Confidence 99999988899999999998877554 6899999999999988777788887775322 223457899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999876
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=6.1e-33 Score=199.47 Aligned_cols=164 Identities=30% Similarity=0.555 Sum_probs=139.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+..+|+++|.+|||||||++++.+..+.. +.+|.+.....+...+..+.+||+||++++...+..+++.+|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 4577899999999999999999999998875 48899988888888899999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 96 IDASDRSRFPESKYELDNLLADDAL-------TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
+|++++.+|.....|+..++..... .+.|+++|+||+|+......+++.+.+.... . ...
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~ 161 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT------------LMGDH 161 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH------------HHTTS
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh------------hccCC
Confidence 9999999999999999988765211 3799999999999988777778777765322 1 334
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+++|||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 57899999999999999999998864
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=206.94 Aligned_cols=163 Identities=34% Similarity=0.595 Sum_probs=141.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|.+|+|||||++++.+..+....||.+.....+...+..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 35569999999999999999999999988777899999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....++..++......+.|+++|+||+|+.+....+++...+.... .....++++++||++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATS 310 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTT------------CCSSCEEEEECBTTT
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhh------------hhcCCCEEEEEECCC
Confidence 99999999999999998876667899999999999988777888888876544 344568999999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.||+++|++|.+.+
T Consensus 311 g~gi~el~~~l~~~l 325 (329)
T 3o47_A 311 GDGLYEGLDWLSNQL 325 (329)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999999875
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.98 E-value=2.1e-31 Score=186.17 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=108.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.++|+++|++|||||||++++.+.......++.+.+.. .+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 357999999999999999999998777666666665543 344555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... .+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIET 143 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-----------------CEEEEC
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-----------------CcEEEe
Confidence 9999999999999999998876667899999999999875 445555555554433 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 9999999999999998865
No 18
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=5.3e-31 Score=185.48 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc--chhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ--ARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~--~~~~~~~~~~~~d~i 92 (194)
.+.++|+++|++|||||||++++.+..+....++.+.+ ...+.+++ ..+.+||+||+.. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 35689999999999999999999998887666666665 34566666 4789999999987 566777788999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... ++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 144 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-----------------CK 144 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-----------------SE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-----------------Ce
Confidence 99999999999999998888887765556899999999999975 344555555443322 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 19
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=7.4e-31 Score=212.93 Aligned_cols=165 Identities=31% Similarity=0.566 Sum_probs=147.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...+.++|+++|.+|+|||||++++.+..+..+.||.+.+...+.+++..+.+|||||++++...+..+++.+|++++|+
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 34567899999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.+|.....++..++......++|+++|+||+|+......+++...+.... .....+++++|||
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA 465 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCA 465 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTT------------CCSSCEEEEECBT
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhh------------hhcCCeEEEEEEC
Confidence 9999999999999999998776667899999999999988777888887776543 3445678999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+|++++|++|.+.+
T Consensus 466 ~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 466 TSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp TTTBTHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999876
No 20
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.1e-30 Score=182.46 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=129.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.... .+..+ ...+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4679999999999999999999988775 45666665443 33344 36899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+.. ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 145 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEE
Confidence 99999999999988888887654457899999999999865 34455666555432 1378999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=1.2e-30 Score=182.66 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=130.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..++++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 356789999999999999999999988776 4556666554 3445554 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+ ....++......... ++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LL 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcC-----------------Ce
Confidence 99999999988999988888876542 36789999999999864 345566666554433 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999876
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=188.56 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999998875 566776654 45666776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce-E
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM-E 170 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 170 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....+++.+..+... + .
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 168 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD-----------------ILC 168 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcC-----------------CCE
Confidence 9999999999999998888876543 36799999999999975 456677777665433 5 8
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 169 ~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 169 AIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-30 Score=185.48 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=132.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeC--CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+.. .+..+ ...+.+||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3467889999999999999999999998875 67778776643 33333 3789999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+..+... +
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~ 160 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-----------------A 160 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-----------------C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------C
Confidence 999999999999999988888876542 35789999999999864 455667777665433 7
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999999876
No 24
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=1.3e-30 Score=181.99 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=128.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5689999999999999999999988775 4555655543 3455665 5899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVE 145 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEE
Confidence 99999999999999888887765556899999999999865 455667776665433 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=2.2e-30 Score=184.51 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=128.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+.+||+++|++|||||||++++.+..+. .+.+|.+.....+.+++ ..+.+||++|++++. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4567899999999999999999999998876 46666554556777777 577889999998876 677899999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC----CCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF----DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|||++++.+|..+..|+..+.......+.|+++|+||+|+. .....++..+..... ...
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 154 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRC 154 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----------------CCC
Confidence 999999999999999999998776555689999999999984 245666666666432 126
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++|||++|.|++++|++|.+.+
T Consensus 155 ~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998764
No 26
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.6e-30 Score=184.60 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=133.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 456789999999999999999999988766 5556665543 4455566 45777999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 157 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPY 157 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-----------------CeE
Confidence 9999999999999999988887755557899999999999875 566677776665543 679
Q ss_pred EEeccc-cCCChHHHHHHHhhhc
Q psy2159 172 FMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
+++||+ +|.|++++|++|.+.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHH
Confidence 999999 9999999999998865
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.3e-30 Score=182.56 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC--EEEEEEEcCCCccchh-hHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii~ 94 (194)
.++|+++|++|||||||++++.+..+. ...++.......+..++ ..+.+||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 368999999999999999999876654 23334444556666776 6788999999998876 67777889999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-----------------CcEE
Confidence 999999999999999999998766556899999999999864 566667666665544 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=6.8e-31 Score=185.52 Aligned_cols=159 Identities=17% Similarity=0.245 Sum_probs=129.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC---EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 457789999999999999999999998876 566777644 45677766 799999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCC-CCCCc-EEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDA-LTDVP-ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-iiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|++++.++..+..|+..+..... ..+.| +++|+||+|+.+ ....++.....+...
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 146 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG---------------- 146 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC----------------
Confidence 9999999999889888888777755210 12445 899999999865 345566666654433
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 147 -~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 147 -FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998865
No 29
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=9.8e-31 Score=185.35 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=130.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 5689999999999999999999977765 5666766654 4455666 6789999999999988888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... .++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 147 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLE 147 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-----------------CcEEE
Confidence 99999999999999998887776667899999999999864 456677777766544 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998864
No 30
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=2e-30 Score=185.27 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=132.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee---EEEeC-----------CEEEEEEEcCCCccchhhH
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE---ELSMG-----------DIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~~ 82 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..+ ...+.+||+||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 346789999999999999999999988775 56777776543 44444 3589999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....+++.+..+...
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------- 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------- 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---------
Confidence 999999999999999999999999998888887765557899999999999865 455666666665433
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 159 --------~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 --------IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp --------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
No 31
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=4.1e-30 Score=179.90 Aligned_cols=156 Identities=20% Similarity=0.323 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4679999999999999999999988876 5667777553 4555655 589999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-----ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|+|++++.++.....|+..+.... ..+.|+++++||+|+.+. ...++......... +
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----------------~ 143 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-----------------L 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------C
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----------------C
Confidence 999999999999988888886643 367899999999998642 34444444443323 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999876
No 32
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=185.78 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=125.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchh-hHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d 90 (194)
...+.++|+++|.+|||||||++++.+.... ...++.+ .....+.+++ ..+.+||++|++++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3456789999999999999999999754432 2233333 3345566666 5789999999988765 7778889999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|++++.+|..+..|+..+.......+.|+++|+||+|+.+ ....++.....+...
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~----------------- 161 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS----------------- 161 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-----------------
Confidence 9999999999999999999998887654446899999999999975 355666666554432
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|+++.+.+
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998865
No 33
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.7e-30 Score=183.28 Aligned_cols=158 Identities=21% Similarity=0.283 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999998876 5666766553 4455554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... +.++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC-----------------CEEE
Confidence 9999999999999999888887665557899999999999965 345566666654433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=6e-30 Score=181.09 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=131.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3456789999999999999999999998876 4556666654 3455554 689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+ ....+++.+...... +
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~ 149 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-----------------L 149 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-----------------C
Confidence 999999999988999998888887653 35889999999999965 345666766665433 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998875
No 35
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=3.5e-30 Score=183.44 Aligned_cols=158 Identities=19% Similarity=0.333 Sum_probs=127.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.++++|+++|++|||||||++++.+..+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988765 444454433 34455666 458889999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... +++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-----------------IPFIE 144 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999999999999998888766667899999999999976 345555555554433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 36
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=5.5e-30 Score=180.70 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=128.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 456789999999999999999999988775 5667776653 4556666 5899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+ ....+++.+.... ...
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------~~~ 147 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----------------NGD 147 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------TTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----------------cCC
Confidence 99999999988998888887776532 236789999999999864 4556666666541 123
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
No 37
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=6.2e-30 Score=184.65 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=133.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999988765 4556665543 4556666 589999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....+++....+... .+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 154 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYV 154 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999999988888765556899999999999865 455667776665433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 155 ~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 155 ETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 38
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1e-30 Score=187.43 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=125.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-----------ccCCCcceeEE---Ee--CCEEEEEEEcCCCccchhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----------MPTLHPTSEEL---SM--GDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-----------~~t~~~~~~~~---~~--~~~~~~~~d~~g~~~~~~~ 81 (194)
..+.++|+++|++|||||||++.+.+.....+ .+|.+.+.... .. ....+.+||+||++++...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 34678999999999999999987776544442 23444333221 12 2368999999999999999
Q ss_pred HhhhhhcCCEEEEEEECC------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCC
Q psy2159 82 WRDYFPAVDAIVFIIDAS------DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~ 155 (194)
+..+++++|++++|+|++ +.+++..+..|+..+ .....+.|+++|+||+|+.+....+++.+.++...
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---- 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG---- 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence 999999999999999999 445666666777666 23457899999999999998888889988887644
Q ss_pred CccCcccccCCcce-EEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQMRPM-ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+ +++++||++|.|++++|++|.+.+
T Consensus 165 -------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 -------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 5 899999999999999999998764
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.2e-30 Score=187.13 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=127.4
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhh
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFP 87 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~ 87 (194)
........+.++|+++|.+|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++
T Consensus 14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 334444567899999999999999999999998876 56677766543 345555 56799999999999999999999
Q ss_pred cCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCccc
Q psy2159 88 AVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++|++++|+|++++.++..+. .|+..+... .++.|+++|+||+|+.+ ....++.....+...
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----------- 160 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG----------- 160 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-----------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-----------
Confidence 999999999999999999874 455444332 36799999999999874 355666666665533
Q ss_pred ccCCcceE-EEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPME-LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. ++++||++|.|++++|++|.+.+
T Consensus 161 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 161 ------CVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp ------CSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 44 99999999999999999998864
No 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2e-30 Score=180.91 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=129.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4679999999999999999999988765 445555443 34556666 4699999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-----------------CCEEE
Confidence 99999999999999988887765557899999999999864 344555555554433 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=3.8e-30 Score=181.92 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=131.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 356789999999999999999999998765 5566666554 3456666 57899999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..++......+.|+++|+||+|+.+ ....++......... +++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 148 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAY 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999999988886655557899999999999865 344555555544322 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 42
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7e-30 Score=180.60 Aligned_cols=159 Identities=19% Similarity=0.328 Sum_probs=123.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567889999999999999999999998874 56677776653 345566 58999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ ....++.....+...
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 147 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKEYG----------------- 147 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHHcC-----------------
Confidence 99999999999889988888887765432 6789999999999975 345556655554433
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=188.43 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|.+|||||||++++.+..+. .+.+|.+... ..+.. ....+.+||+||++++...+..+++.+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 47889999999999999999999998876 4556666543 22222 34789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... .+++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 164 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-----------------ATFM 164 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999999999988776667899999999999864 445556655555433 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998865
No 44
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=5.5e-30 Score=182.15 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=130.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999988876 456666644 34566666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 149 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENE-----------------LMF 149 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999988887775532 36789999999999864 455566666654433 789
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+++.+.+
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 150 LETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 45
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=1e-29 Score=184.90 Aligned_cols=176 Identities=22% Similarity=0.218 Sum_probs=126.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC---CEEEEEEEcCCCccchh-hHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARR-VWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+....++.......+.++ +..+.+||+||++++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567899999999999999999999988876666666666667776 57899999999999988 7888899999999
Q ss_pred EEEECCCCC-ChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCc------------------
Q psy2159 94 FIIDASDRS-RFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL------------------ 152 (194)
Q Consensus 94 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~------------------ 152 (194)
+|+|+++.. ++.....+|..++.. ....+.|+++|+||+|+......+++.+.+.....
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998832 355555666655433 22357899999999999876666665554432211
Q ss_pred ----cCCCccCcccccCCcceEEEEeccccC------CChHHHHHHHhhhc
Q psy2159 153 ----TTGKEFTPREILQMRPMELFMCSVLKR------QGFGNGFRWLANYI 193 (194)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~------~~v~~l~~~l~~~i 193 (194)
...++..+........+.|++|||++| .||+++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 011111112111112678999999999 99999999998764
No 46
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=5.6e-30 Score=181.94 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=132.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 356789999999999999999999988775 4555555543 3455666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....+++.+..+... +++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 157 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNY 157 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999999888887765556899999999999865 455667777665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 158 VETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=6.2e-30 Score=182.62 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=129.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccch-hhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 456789999999999999999999988876 4666666543 4566666 689999999999988 788889999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... +
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~ 159 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------M 159 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-----------------C
Confidence 999999999999999999988887765567899999999999865 345555555554333 5
Q ss_pred EEEEeccccC---CChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKR---QGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~---~~v~~l~~~l~~~i 193 (194)
+++++||++| .|++++|++|.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 7999999999 99999999998865
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=1.3e-29 Score=182.54 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC-------------------------------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD------------------------------- 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~------------------------------- 64 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46789999999999999999999998876 5666766543 3344443
Q ss_pred --------EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 --------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.+||+||++++...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999998899988888888765 2489999999999432
Q ss_pred -CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 -AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++.+.++... ++++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDNN-----------------LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 456677777776543 6899999999999999999998764
No 49
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-30 Score=182.03 Aligned_cols=156 Identities=19% Similarity=0.324 Sum_probs=128.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46689999999999999999999998775 455555543 45667777 78999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+ ....++......... .++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-----------------IQL 147 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999988888886643 5799999999999865 344555555554433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 148 FETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.2e-29 Score=179.03 Aligned_cols=158 Identities=19% Similarity=0.260 Sum_probs=131.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 346789999999999999999999998875 4566666553 4455555 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....+++.+..+... ++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 153 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LL 153 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999888887776542 35789999999999864 455667776665433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998865
No 51
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=1.3e-29 Score=179.15 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=122.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.++++|+++|++|||||||++++.+..+..+.||.+... ..+..++ ..+.+||+||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 467899999999999999999999998887778877653 4456666 5789999999987 4567889999999
Q ss_pred EECCCCCChHHHHHHHHHHHh--CCCCCCCcEEEEeeCCCCC----CCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLA--DDALTDVPILILGNKIDIF----DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~piiiv~nK~D~~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|++++.++..+..|+..+.. ....++.|+++|+||+|+. .....++..+..... ..+
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 143 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------KRC 143 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH----------------SSE
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh----------------cCC
Confidence 999999999999886544432 2233679999999999984 245566666655432 127
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+++.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 899999999999999999998764
No 52
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1.6e-30 Score=182.16 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=123.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 356789999999999999999999988875 5667777654 3455554 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+ ....++..+..+... ++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AK 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------Ce
Confidence 9999999998899988887776543 225789999999999865 455666666665433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 53
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=1e-30 Score=185.60 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45789999999999999999999988765 556666654 34566777 78999999999999988889999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ..++.|+++|+||+|+.+ ....++.....+... +++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 147 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IKF 147 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888887654 235789999999999975 345666666665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 148 METSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EECCC---CCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 54
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.4e-30 Score=184.55 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988876 5667766543 4566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 165 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYY 165 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999888888776542 35789999999999864 445556655554322 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 166 LETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 55
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=2.3e-30 Score=181.02 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999998775 5667766553 4555555 58999999999999888889999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+ ....+++....+... .++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 143 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRF 143 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999988999888888876643 6789999999999865 445666666665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 56
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=8.1e-30 Score=178.50 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=129.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 346789999999999999999999998865 5667777654 3455555 6899999999999999989999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+... ..+..|+++|+||+|+.+ ....++.....+... .+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AI 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-----------------CE
Confidence 9999999998898888887777653 346789999999999865 344555555554333 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999875
No 57
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=181.39 Aligned_cols=157 Identities=21% Similarity=0.312 Sum_probs=130.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.++.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45689999999999999999999998876 455666544 45666776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... .++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 155 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPF 155 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CcE
Confidence 9999999999999988887775542 35789999999999875 344455555555433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998865
No 58
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=182.60 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45689999999999999999999998875 5667776554 3445554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+... .++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEF 147 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-----------------CeE
Confidence 999999998999888888877654 235789999999999976 345556666555433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 148 FEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 59
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.7e-30 Score=188.23 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=126.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|.+|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||++|++++...+..+++.+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 346789999999999999999999998876 46777776653 233333 78999999999999999999999999999
Q ss_pred EEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------------CCCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--------------~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++.. ...|+..+... .++.|+++|+||+|+.+ ....++.....+...
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 174 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG------- 174 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-------
Confidence 9999999999998 56777777554 26899999999999964 355566666655433
Q ss_pred CcccccCCcce-EEEEeccccCCC-hHHHHHHHhhhc
Q psy2159 159 TPREILQMRPM-ELFMCSVLKRQG-FGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~-~~~~~Sa~~~~~-v~~l~~~l~~~i 193 (194)
+ .+++|||++|.| ++++|+++.+.+
T Consensus 175 ----------~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 175 ----------AEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp ----------CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ----------CCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 5 899999999998 999999998754
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.3e-30 Score=183.01 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||+++ ...+..+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 56789999999999999999999998876 55666665543 355555 6799999999998 7778888999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 167 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFY 167 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999988888887654456899999999999865 455566666554433 6899
Q ss_pred EeccccCC-ChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
++||++|. |++++|++|.+.+
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHH
Confidence 99999999 9999999998764
No 61
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.9e-30 Score=184.70 Aligned_cols=157 Identities=17% Similarity=0.268 Sum_probs=129.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+||+++|++|||||||++++.+..+. .+.+|.+.+.. .+.. .+..+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46789999999999999999999998765 45566665543 3333 3489999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 162 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-----------------FDF 162 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888877653 346799999999999865 355556665555433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
No 62
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.7e-29 Score=182.70 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=130.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999998876 4666666554 4566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPF 147 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999988888776542 35789999999999976 345556665554433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 148 LETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 63
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=1.5e-29 Score=180.62 Aligned_cols=156 Identities=20% Similarity=0.297 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4579999999999999999999998875 5667776654 3444454 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++..+..+... .+++
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 162 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-----------------FEFF 162 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEE
Confidence 99999998999988888877654 245789999999999865 344556666655433 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 163 ~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 163 EASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 64
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=181.15 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=129.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345689999999999999999999998876 4566666544 3344444 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++......... +.
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 163 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-----------------LL 163 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CE
Confidence 9999999998898888888887654 346799999999999865 345566666554433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 65
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=1.3e-29 Score=181.25 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=127.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 346789999999999999999999998876 455565554 34566666 6899999999999999888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 159 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-----------------LI 159 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999988888876542 35799999999999865 455666666654433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 66
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=4.8e-30 Score=184.96 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=123.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 356789999999999999999999988775 455666544 45566676 7899999999999888888899999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++.....+... +.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 163 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LM 163 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999998888876542 26799999999999864 455566666654433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
No 67
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.3e-29 Score=178.87 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.++++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999988776 455666543 35566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 153 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-----------------VMF 153 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------CeE
Confidence 9999999888999988888876542 35789999999999864 344556665554433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 154 ~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 154 IETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998875
No 68
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=3.2e-30 Score=187.88 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=129.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC------------CEEEEEEEcCCCccchhhH
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG------------DIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~------------~~~~~~~d~~g~~~~~~~~ 82 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.++ ...+.+||+||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356789999999999999999999998775 4556665543 234443 4689999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++.....+...
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~--------- 172 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG--------- 172 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---------
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC---------
Confidence 999999999999999999988988888887775554447899999999999865 445566666665433
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 173 --------~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 173 --------IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp --------CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --------CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
No 69
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-29 Score=181.33 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 5689999999999999999999998775 5667776654 3555665 7899999999999999999999999999999
Q ss_pred EECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccCc
Q psy2159 96 IDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 96 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
+|++++.++.... .|+..+... .++.|+++|+||+|+.+. ...++..+..+...
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------- 165 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--------- 165 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT---------
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC---------
Confidence 9999999999887 566666553 258999999999999763 22333333332211
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++++||++|.|++++|++|.+.+
T Consensus 166 -------~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 -------ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp -------CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 13799999999999999999998764
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=1.6e-29 Score=182.26 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=123.1
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
++....++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 35567889999999999999999999998876 4566666654 4566666 589999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCC
Q psy2159 92 IVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~ 156 (194)
+++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.. ..++.....+..
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 171 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI------ 171 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC------
Confidence 99999999998898884 454444332 2579999999999997642 122222222111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++||++|.|++++|++|.+.+
T Consensus 172 ----------~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 ----------SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp ----------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123799999999999999999998754
No 71
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=7.6e-30 Score=178.65 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=123.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4579999999999999999999988875 5666666544 4555555 689999999999999888889999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIE 143 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999888988888888776542 35789999999999954 345555555554433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 144 SSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=3.4e-29 Score=174.33 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=127.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||+.++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3578999999999999999999988765 4455555442 3455555 5689999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+|++++.++.....|+..+.......+.|+++++||+|+.+ ....++..+..+... ++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-----------------IPYIET 144 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-----------------CeEEEe
Confidence 99999988888888888876654445899999999999876 445556666554433 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
No 73
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.8e-29 Score=181.66 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=119.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 356789999999999999999999998875 566666654 34566666 6799999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--------CCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--------DAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+. .....++.........
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~------------- 170 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG------------- 170 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-------------
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-------------
Confidence 9999999999999988887766543 23578999999999985 2334445555444323
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 171 ----~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ----ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ----CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998865
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.5e-29 Score=177.37 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4579999999999999999999998775 56666665543 334444 5799999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|++++.++.....|+..+... ...++.|+++|+||+|+.+ ....++......... ++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 9999988888888887776553 2235789999999999865 344444444443322 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999875
No 75
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.1e-29 Score=178.23 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=116.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..+ ...+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356789999999999999999999998865 556666544 3445544 3689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC---CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.. ....++.....+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---------------- 148 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---------------- 148 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----------------
Confidence 999999999999999988888776542 236789999999999854 2345555555431
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1236799999999999999999998764
No 76
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=3e-30 Score=186.50 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCC--cceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLH--PTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
.+.++|+++|++|||||||++++.+. .+. .+.+|.+ .....+.++ ...+.+||+||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35679999999999999999999988 655 5667776 345566776 46899999999999999999999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC---CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ....+++.+..+...
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~------------- 164 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT------------- 164 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-------------
Confidence 999999999999999999988888876543 25799999999999965 455667777665533
Q ss_pred CCcceEEEEecccc-CCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLK-RQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~-~~~v~~l~~~l~~~i 193 (194)
++++++||++ |.|++++|++|.+.+
T Consensus 165 ----~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 165 ----LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ----CEEEECCC-------CHHHHHHHHHH
T ss_pred ----CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 7899999999 999999999998754
No 77
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.4e-29 Score=180.61 Aligned_cols=159 Identities=15% Similarity=0.192 Sum_probs=127.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 456789999999999999999999998776 45666665443 334444 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+ ....++......... +++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-----------------CAF 147 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------CeE
Confidence 9999999888888887776665432 135789999999999976 344555555554333 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998865
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=1.1e-29 Score=183.53 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=120.1
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhh
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~ 85 (194)
..+..+....+.++|+++|.+|||||||++++....+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 98 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 34455556678899999999999999999999988776 5556665443 3444555 567799999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhccc
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLY 150 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~ 150 (194)
++.+|++++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.... ..++.....+.
T Consensus 99 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 175 (204)
T 4gzl_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE- 175 (204)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh-
Confidence 99999999999999999999987 5555554432 689999999999987632 22222222221
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++|++|.+.+
T Consensus 176 ---------------~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 176 ---------------IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ---------------TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ---------------cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1224699999999999999999998864
No 79
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.96 E-value=7.8e-30 Score=182.00 Aligned_cols=159 Identities=22% Similarity=0.263 Sum_probs=125.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 4467789999999999999999999998865 5677777654 3344555 67899999999988775 5688999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.. ....++..+..+...
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG----------------- 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-----------------
Confidence 999999999999999988888765421 25789999999999864 455666666665533
Q ss_pred eEEEEecc-ccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSV-LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa-~~~~~v~~l~~~l~~~i 193 (194)
++++++|| ++|.|++++|++|.+.+
T Consensus 159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcEEEEeecCccccHHHHHHHHHHHH
Confidence 68999999 89999999999998765
No 80
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=179.70 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=123.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35678999999999999999999988775 456666544 45566666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+.. ....+
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~ 166 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------TGMRF 166 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCeE
Confidence 999999998999888877666443 335799999999999865 34455555555331 23689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 167 ~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 167 CEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 81
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-29 Score=184.99 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=124.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45689999999999999999999998876 456666654 34566776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++.....+... +++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 152 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-----------------LLF 152 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999988888876542 35789999999999865 445566666654433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 153 ~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 153 TETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp EECCCC-CCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 82
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.9e-29 Score=180.22 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC--CccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDA 91 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 91 (194)
.+.+||+++|.+|||||||++++.+... ....++.+.+ ...+.+++ ..+.+||++|+.. +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4568999999999999999999996443 3333444444 34566776 4678999999886 45566777888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|||+++..+|..+..|+..+.......+.|+++|+||+|+.+ ....++......... +
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-----------------~ 177 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------C 177 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-----------------C
Confidence 999999999999999998888776543345799999999999864 344444444333222 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++|||++|.||+++|++|.+.+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998764
No 83
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=4.1e-29 Score=179.91 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=118.5
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..++.++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3467889999999999999999999988765 5666666544 3456666 5778999999999999989999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCc
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~ 157 (194)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+. ...++.....+...
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 167 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK------ 167 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC------
Confidence 9999999999999887 5666665432 48999999999998642 23333333332211
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++|||++|.|++++|++|.+.+
T Consensus 168 ----------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 ----------AASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ----------CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 24899999999999999999998764
No 84
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=182.73 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=104.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 3457789999999999999999999988775 4556655443 3455555 5899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCc
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~ 157 (194)
++|+|++++.++..+. .|+..+... .++.|+++|+||+|+.... ..++.....+..
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------- 180 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV------- 180 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-------
Confidence 9999999999999887 566555443 2578999999999997642 222222222221
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...++++|||++|.|++++|++|.+.+
T Consensus 181 ---------~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 181 ---------GAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp ---------TCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 124899999999999999999998764
No 85
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.6e-29 Score=180.58 Aligned_cols=158 Identities=19% Similarity=0.310 Sum_probs=127.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 356789999999999999999999988875 566666654 35566777 6899999999999998888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++......... +++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~ 158 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPF 158 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------CEE
Confidence 99999999888988888888776542 24789999999999854 344555555554333 579
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 86
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=4.4e-29 Score=177.27 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999988775 5566666543 3455555 567799999999999998899999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.......
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------- 150 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE---------- 150 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH----------
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh----------
Confidence 99999998898887 5655554432 489999999999986531 22222222221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ..++++++||++|.|++++|+++.+.+
T Consensus 151 ----~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 151 ----I--GAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ----T--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----c--CCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 1 124899999999999999999998865
No 87
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=4.7e-29 Score=180.26 Aligned_cols=160 Identities=20% Similarity=0.294 Sum_probs=127.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 356789999999999999999999998875 5666666543 3444554 6899999999999998888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ....+++...... ...
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~ 148 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----------------KNN 148 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------TTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------cCC
Confidence 999999999889998888877765421 24789999999999975 3445555555531 123
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=8e-29 Score=176.85 Aligned_cols=158 Identities=18% Similarity=0.318 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.++++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 46689999999999999999999988765 3445554433 3455665 569999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|+++..++..+..|+..+.......+.|+++|+||+|+.+ ....+++.+..+... +++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 161 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-----------------IPFIE 161 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999988998888887776654445799999999999876 455666666665433 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
No 89
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=3.2e-29 Score=181.98 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46789999999999999999999988876 56677776543 445555 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHhhhcccCccCCCccCcccc
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA----------SEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----------~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.........
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~------------ 152 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG------------ 152 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC------------
Confidence 99999999999887 5666665432 489999999999986531 3444444443221
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 153 ----~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 153 ----AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 14799999999999999999998764
No 90
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=4.2e-30 Score=187.88 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=126.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEE--EeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEEL--SMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|.+|||||||++++..+.+. .+.+|.+.+.... ..++ ..+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 457789999999999999999996665544 5677887765443 3333 7899999999999999889999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+....... ..+.++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 152 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQYY 152 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHHH-----------------HTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999999888887653 58899999999999764333222222222 236899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
No 91
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9e-29 Score=179.14 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=119.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+....++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 3456789999999999999999999998876 4556665544 3456666 6899999999999999889999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+....+........+...... ....+.+
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~ 176 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV--RIQAYDY 176 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH--hcCCCEE
Confidence 9999999988888884 555555432 2589999999999986532111111111000000000000000 1112379
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 92
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=5.6e-29 Score=176.96 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.||.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 56789999999999999999999998876 4667766554 2344444 689999999999999999999999999999
Q ss_pred EEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|+|++++.++..+ ..|+..+... .++.|+++|+||+|+.++ ...++..+..+..
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------- 153 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI--------- 153 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc---------
Confidence 9999999999888 4566655443 257999999999998642 3334444433221
Q ss_pred cccccCCcceEEEEeccc-cCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
...++++|||+ +|.|++++|+++.+.+
T Consensus 154 -------~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 -------GAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp -------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred -------CCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 12579999998 6899999999998764
No 93
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=2.5e-29 Score=178.09 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 46789999999999999999999988765 45566554332 233333 567799999999999999999999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHhhhcccCccCCCccCcc
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.....+...
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------- 153 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG---------- 153 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT----------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC----------
Confidence 99999999999887 4665554432 479999999999986531 2333333332211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 154 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 ------APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp ------CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 14799999999999999999998764
No 94
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=6.1e-29 Score=181.25 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=126.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe---CC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM---GD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~---~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
....++|+++|.+|||||||++++.+..+. .+.+|.+........ ++ ..+.+||+||++++...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 356789999999999999999999987766 456777765544333 22 789999999999999888899999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... +
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~ 149 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-----------------Y 149 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-----------------C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------C
Confidence 999999999999999888877775542 24589999999999876 344555555554433 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 150 EYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp EEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998864
No 95
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=178.21 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=122.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....++|+++|++|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 356789999999999999999999998876 45677665542 344444 78999999999999999899999999999
Q ss_pred EEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++..+ ..|+..+... .++.|+++|+||+|+.++ ...++.....+..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 174 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-------- 174 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc--------
Confidence 99999999999988 5666666443 257999999999998642 3333333333221
Q ss_pred CcccccCCcceEEEEeccc-cCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
+ ...+++|||+ +|.|++++|++|.+.+
T Consensus 175 ------~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 ------G--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp ------T--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ------C--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 2579999999 6899999999998753
No 96
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=5.6e-28 Score=173.14 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--CCccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDA 91 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 91 (194)
.+.++|+++|.+|||||||++++.+.. +....++.+.+ ...+.+++ ..+.+||++|+.. ...+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999999633 33323334443 34566776 4678899999876 44566777888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|||+++..+|.....|+..+.......+.|+++|+||+|+.. ....++......... .
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-----------------~ 146 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-----------------X 146 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-----------------C
Confidence 999999999999999988887776543446799999999999864 344444433332222 5
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++|||++|.||+++|+++.+.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 799999999999999999998764
No 97
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.1e-27 Score=168.92 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=122.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+..+..+|+++|++|||||||++++.+..+. .+.+ |.......+..++..+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4568899999999999999999999998776 2333 344455678888999999999999999988888899999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|++++.. ......+..+.. .+.|+++|+||+|+.+. ..+++...++... .... ......++++
T Consensus 84 ~v~d~~~~~~-~~~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~ 149 (178)
T 2lkc_A 84 LVVAADDGVM-PQTVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYN-------LVPE-EWGGDTIFCK 149 (178)
T ss_dssp EEEETTCCCC-HHHHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTT-------CCBT-TTTSSEEEEE
T ss_pred EEEECCCCCc-HHHHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcC-------cChh-HcCCcccEEE
Confidence 9999988543 333333433322 57899999999999764 3455555543322 0000 0012368999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.95 E-value=4.2e-28 Score=174.20 Aligned_cols=165 Identities=13% Similarity=0.225 Sum_probs=112.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEE--e---CCEEEEEEEcCCCccchhhH---hhhhhc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELS--M---GDIVFTTHDLGGHVQARRVW---RDYFPA 88 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~--~---~~~~~~~~d~~g~~~~~~~~---~~~~~~ 88 (194)
...+.+||+++|.+|||||||++++.+........+.+.+...+. . ....+.+||+||++++.... ..++++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 346789999999999999999999887544443333333333222 2 33799999999999987766 788999
Q ss_pred CCEEEEEEECCCC--CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCccc
Q psy2159 89 VDAIVFIIDASDR--SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 89 ~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+|++++|+|+++. +++.....|+..+.. ..++.|+++|+||+|+.++.. ..++........ ..
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~---------~~ 164 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL---------AD 164 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH---------HH
Confidence 9999999999997 445555556665532 236899999999999865211 111111111000 00
Q ss_pred -ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 -ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+.+++|||++ .|++++|+.+.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0113347899999999 99999999998865
No 99
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=8.3e-30 Score=183.47 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+ .....+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 35689999999999999999999988776 3444444 4456667777 68999999999999998899999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++......... +++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 172 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPF 172 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-----------------CCB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888877543 3457999999999998652 22223333332222 578
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 173 ~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 173 LETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCCCC---HHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999876
No 100
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=3.1e-27 Score=163.99 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=108.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc-------chhhHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 90 (194)
.+|+++|++|+|||||++++.+..+.. ...|.......+..++..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 489999999999999999999887542 22234445567778889999999999887 3455667788999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|+++..+ ....++..++.. .+.|+++|+||+|+.+. .+++.+.. . .+ ..+
T Consensus 82 ~~i~v~d~~~~~~--~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~-~--------------~~--~~~ 137 (161)
T 2dyk_A 82 VVLFAVDGRAELT--QADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY-G--------------LG--FGD 137 (161)
T ss_dssp EEEEEEESSSCCC--HHHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG-G--------------GS--SCS
T ss_pred EEEEEEECCCccc--HhHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH-h--------------CC--CCC
Confidence 9999999998543 333445555443 57899999999998653 11111111 1 11 126
Q ss_pred EEEeccccCCChHHHHHHHhhhcC
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++++||++|.|++++|+++.+.++
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHCC
T ss_pred eEEEecccCCChHHHHHHHHHhCc
Confidence 899999999999999999998764
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.2e-27 Score=164.54 Aligned_cols=149 Identities=22% Similarity=0.310 Sum_probs=109.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--c
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--A 88 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 88 (194)
++.+++++|++|||||||++++.+..+. ...| |.......+.+++..+.+|||||+.++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3578999999999999999999987653 2223 4455566778888999999999998764 33455554 7
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+|++++|+|+++ +.....|+..+.. .+.|+++|+||+|+.. .... +.....+...
T Consensus 82 ~~~~i~v~D~~~---~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~--------------- 138 (165)
T 2wji_A 82 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILG--------------- 138 (165)
T ss_dssp CSEEEEEEETTC---HHHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT---------------
T ss_pred CCEEEEEecCCc---hhHhHHHHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhC---------------
Confidence 999999999987 4445556666654 3789999999999753 1111 1222222111
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 139 --~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 --VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp --SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred --CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998876
No 102
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=9.6e-27 Score=163.89 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~ 87 (194)
+..+|+++|++|||||||++++.+..... ...|.+.....+.+++..+.+|||||+.+.... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876532 223444456778888989999999998753211 123578
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+++..++. ...|+..+... ...+.|+++|+||+|+..... ... ...
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----~~~-----------------~~~ 138 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL-----GMS-----------------EVN 138 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----EEE-----------------EET
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh-----hhh-----------------hcc
Confidence 999999999999988876 34566555443 235799999999999854210 000 112
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998865
No 103
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.95 E-value=7.5e-28 Score=171.25 Aligned_cols=157 Identities=17% Similarity=0.250 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCCcceeEEEe-------CCEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLHPTSEELSM-------GDIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+++|+++|++|||||||++++.+. .+. .+.+|.+.+...... ....+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 333 467777776544332 3468999999999999888888899999
Q ss_pred EEEEEEECCCC-CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HH-HhhhcccCccCCCccCccccc
Q psy2159 91 AIVFIIDASDR-SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED----EV-RHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 91 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----e~-~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+..... +. ....+. .
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------------~ 145 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNK--------------R 145 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC--------------T
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHh--------------c
Confidence 99999999997 47888888888876542 578999999999986532111 11 111111 1
Q ss_pred CC-cceEEEEeccccCC-ChHHHHHHHhhhc
Q psy2159 165 QM-RPMELFMCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~-~~~~~~~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
+. ....++++||++|. +++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11 11259999999997 9999999998754
No 104
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.8e-29 Score=182.39 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=120.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 3467899999999999999999999987775 4455554433 2333343 5677999999999999999999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+.............+........ ..+++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~ 181 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKY 181 (204)
Confidence 9999999999999887 455554332 247999999999998753211111110000000000011111111 12378
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998754
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=1.5e-26 Score=176.95 Aligned_cols=159 Identities=15% Similarity=0.237 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEe-CCEEEEEEEcCCCccc-----hhhHhhhhhcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQA-----RRVWRDYFPAV 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 89 (194)
...||+++|.+|||||||++++.+.... .+.+|.+.....+.+ ++..+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4579999999999999999999987433 577888888888876 5689999999999988 67788889999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCH--------HHHHhhhcccCccCCCccCc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASE--------DEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~--------~e~~~~~~~~~~~~~~~~~~ 160 (194)
|++++|+|++++.++..+..|...+... ...++.|+++++||+|+.+.... +++.+..+.
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~----------- 150 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE----------- 150 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH-----------
Confidence 9999999999999999887654333221 11367999999999998762112 233333322
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+...++++++||++ .++.++|..+++.+
T Consensus 151 ---~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 151 ---FGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ---TTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred ---cCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 222247899999999 89999999888754
No 106
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=2.8e-26 Score=168.43 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCC------ccc---hhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGH------VQA---RRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~---~~~~~~~~ 86 (194)
.+.++|+++|++|||||||++++.+..+. ....|.......+..++..+.+|||||+ ++. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46789999999999999999999988764 1222445555666778899999999999 331 12233457
Q ss_pred hcCCEEEEEEECCCCCChHHH--HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHH---HHHhhhcccCccCCCccC
Q psy2159 87 PAVDAIVFIIDASDRSRFPES--KYELDNLLADDALTDVPILILGNKIDIFDA--ASED---EVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~---e~~~~~~~~~~~~~~~~~ 159 (194)
..+|++++|+|++++.++... ..++..+... ..+.|+++|+||+|+.+. ...+ ++....+.
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------- 174 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---------- 174 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH----------
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh----------
Confidence 788999999999998887632 3455555332 357999999999999763 2222 12222211
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+.+++++|||++|.|++++|++|.+.+
T Consensus 175 -----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 -----VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -----CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 11237899999999999999999998764
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.5e-26 Score=165.65 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCccee--EEEeCCEEEEEEEcCC----------CccchhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTSE--ELSMGDIVFTTHDLGG----------HVQARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~d~~g----------~~~~~~~~~~~ 85 (194)
.+.++|+++|++|||||||++++.+..+ ..+.++.+.+.. ....+ ..+.+||+|| ++.+...+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999874 355555554432 23333 3799999999 66677777777
Q ss_pred hhcC---CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 86 FPAV---DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 86 ~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+....++..+.+....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------- 163 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTL----------- 163 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-----------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHH-----------
Confidence 7776 9999999999877666532 2222222 5789999999999977443333222222111
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|++|.+.+
T Consensus 164 -~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 -NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp -TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -cccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 112346899999999999999999998876
No 108
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=7.2e-27 Score=177.93 Aligned_cols=158 Identities=18% Similarity=0.284 Sum_probs=114.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh---hHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~ii~v 95 (194)
||+++|.+|||||||++++.+..++. +.||++.....+. ...++++|||+||+++.+ .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765543 5678888776653 347999999999999964 468899999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccCcccc-cCCcc
Q psy2159 96 IDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREI-LQMRP 168 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (194)
+|+++. +.....+|.+++.. ...++.|+++++||+|+..+... .++........ ++. .....
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~l---------a~~~~~~~~ 148 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEEL---------LELGLDGVQ 148 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTT---------SSSSCSCCC
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHH---------HhhcccccC
Confidence 999987 55555555444321 12368999999999999764221 12222221111 000 01135
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.|++|||++ .+|.++|..+++.+
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred ceEEEeccCC-CcHHHHHHHHHHHH
Confidence 7899999998 58999999998865
No 109
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=1.6e-26 Score=165.14 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEE-EeCCEEEEEEEcCC----------CccchhhHhhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL-SMGDIVFTTHDLGG----------HVQARRVWRDYFP 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~d~~g----------~~~~~~~~~~~~~ 87 (194)
...++|+++|++|||||||++++.+.....+.++.+.+.... ...+..+.+||+|| ++.+...+..+++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 356799999999999999999999988776666666554322 22234688999999 5556666677776
Q ss_pred cC---CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 88 AV---DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 88 ~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+ |++++|+|.++..+.... .+...+.. .+.|+++|+||+|+.+....++..+.+.... .
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------------~ 163 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF------------S 163 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------H
T ss_pred cCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH------------h
Confidence 65 999999999875443332 22222222 3789999999999976444444433332211 1
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 12336799999999999999999999876
No 110
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=4.5e-26 Score=175.67 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=122.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....++|+++|.+|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 456789999999999999999999988775 5566665543 3455666 45669999999999999999999999999
Q ss_pred EEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+. ...++.....+..
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 301 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-------- 301 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc--------
Confidence 999999998898887 4555554432 48999999999998543 2233333333221
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++|||++|.|++++|++|.+.+
T Consensus 302 --------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 302 --------GAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp --------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 124799999999999999999998764
No 111
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=1e-25 Score=162.11 Aligned_cols=157 Identities=20% Similarity=0.307 Sum_probs=123.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc--ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP--TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...++++++|++|||||||++++.+..+. .+.+|.+. ..+.+.+++ ..+.+||++|++++...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998775 45566554 346677777 46789999999998888888888999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.+ ....++......... +.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~ 144 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSF 144 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CeE
Confidence 999999988888887777666432 235689999999999865 344555555543322 678
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||+++.|++++|++|.+.+
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=2.2e-25 Score=170.45 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=119.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeC-CEEEEEEEcCCCccch----------hh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMG-DIVFTTHDLGGHVQAR----------RV 81 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~ 81 (194)
...++..|+++|.+|||||||+|++.+.++..+.+ |..........+ +..+.+|||||+.+.. ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 34577789999999999999999999988764333 334445566777 8999999999986543 45
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
...++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+....+...
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~---------- 151 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK---------- 151 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH----------
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh----------
Confidence 56678899999999999998777776655555543 478999999999997 433333333333221
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++||++|.|++++|+++.+.+
T Consensus 152 ----~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 152 ----HPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ----CTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ----ccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 11336799999999999999999998865
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=8.7e-26 Score=160.71 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP-- 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 87 (194)
.+.++|+++|++|||||||++++.+..+. ...+ |.......+..++..+.+||+||+.++. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 36679999999999999999999987543 2233 3444566778888999999999998764 34555554
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.+|++++|+|.++ +.....|+..+.. .+.|+++++||+|+..... .++.....+...
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------------- 142 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC---------------
Confidence 4999999999875 6666677776654 5789999999999754110 012222222211
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 143 --~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 143 --VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp --SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 114
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=2.9e-26 Score=163.28 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=108.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCC-----------CccchhhHhhhhhc-
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPA- 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 88 (194)
++|+++|++|||||||++++.+..+. .+.|+.......+..+ .+.+||+|| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998765 3445544445555555 789999999 56666777777776
Q ss_pred CCEEEEEEECCCCCChHHHH-HHHHH--------HHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 89 VDAIVFIIDASDRSRFPESK-YELDN--------LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... .++.....+....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~------- 151 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEV------- 151 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTC-------
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhh-------
Confidence 67666666666666777663 33221 1111112578999999999997643 3334333333220
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......+++++||++|.|++++|++|.+.+
T Consensus 152 ---~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 152 ---PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ---CGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---hhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 0000024689999999999999999998764
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=2e-25 Score=182.41 Aligned_cols=168 Identities=16% Similarity=0.179 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHh-----CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEE--------EeC----CE
Q psy2159 4 IWTKFREVLLRL-----GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEEL--------SMG----DI 65 (194)
Q Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~--------~~~----~~ 65 (194)
+..|++...... ....+.+||+++|.+|||||||++++.+..+. .+.+|.+.+.... ..+ +.
T Consensus 19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~ 98 (535)
T 3dpu_A 19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98 (535)
T ss_dssp HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence 455666665521 12457789999999999999999999998875 5677877776533 122 47
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHH
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEV 143 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~ 143 (194)
.+.+||+||++.+...+..+++.+|++++|+|+++ ++....|+..+.... ++.|+++|+||+|+.+ ....+++
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHH
Confidence 99999999999999988889999999999999976 456667777776543 4689999999999976 3456666
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+.... .+++++||++|.|++++++++.+.+
T Consensus 174 ~~~~~~~~-----------------~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 174 NERFPAIE-----------------NRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHCGGGT-----------------TCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHhcC-----------------CceEEEecCcccCHHHHHHHHHHHH
Confidence 66665543 5799999999999999999998765
No 116
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.5e-27 Score=173.98 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=112.9
Q ss_pred cCCCCeEEEEcCC---------CCChHHHHHHHHcC---CCC-ccccCC-Ccc--eeE----------------EEeCCE
Q psy2159 18 WKKSGKLLFLGLD---------NAGKTFLLQMLKND---RTA-QHMPTL-HPT--SEE----------------LSMGDI 65 (194)
Q Consensus 18 ~~~~~~i~v~G~~---------~~GKStli~~~~~~---~~~-~~~~t~-~~~--~~~----------------~~~~~~ 65 (194)
..+.+||+++|.+ |||||||++++.+. .+. .+.+|. +.. ... ++....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567899999999 99999999999984 343 333432 221 111 122337
Q ss_pred EEEEEE-----------------------cCCCccchhhHhhhhh---------------------cCCEEEEEEECCCC
Q psy2159 66 VFTTHD-----------------------LGGHVQARRVWRDYFP---------------------AVDAIVFIIDASDR 101 (194)
Q Consensus 66 ~~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 101 (194)
.+.+|| ++|++++...+..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 6666666666666666 79999999999998
Q ss_pred --CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC
Q psy2159 102 --SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179 (194)
Q Consensus 102 --~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (194)
.++..+..|+..+.......+.|+++|+||+|+......++....... ...++++++||++|
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----------------~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----------------KKNLQVVETSARSN 239 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----------------SSSCCEEECBTTTT
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----------------cCCCeEEEEECCCC
Confidence 899999998888765422357999999999998653222333333321 11367999999999
Q ss_pred CChHHHHHHHhhhc
Q psy2159 180 QGFGNGFRWLANYI 193 (194)
Q Consensus 180 ~~v~~l~~~l~~~i 193 (194)
.|++++|++|.+.+
T Consensus 240 ~gv~elf~~l~~~l 253 (255)
T 3c5h_A 240 VNVDLAFSTLVQLI 253 (255)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=7e-25 Score=163.74 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhh--h
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYF--P 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 87 (194)
.+.++|+++|++|||||||+|++.+..+. . ...|.......+..++..+.+||+||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 35679999999999999999999987654 2 23344444566777789999999999987653 234444 5
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHhhhcccCccCCCccCcccc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--A--ASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~--~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+|++++|+|+++.+ ....++..+.. .+.|+++++||+|+.. . ...+++.+.+ +
T Consensus 83 ~~d~ii~V~D~t~~~---~~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---g------------ 140 (258)
T 3a1s_A 83 DADLVILVADSVNPE---QSLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL---G------------ 140 (258)
T ss_dssp CCSEEEEEEETTSCH---HHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH---C------------
T ss_pred CCCEEEEEeCCCchh---hHHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc---C------------
Confidence 799999999999854 34445566544 4799999999999754 1 2223333332 2
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++|+++.+.
T Consensus 141 -----~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 141 -----IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 679999999999999999999875
No 118
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=1.8e-24 Score=164.83 Aligned_cols=155 Identities=22% Similarity=0.206 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCcc--------chhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~ 86 (194)
.+..+|+++|.+|||||||+|++.+.++..+. .|.......+..++..+.+|||||+.+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 35568999999999999999999998876332 233333345566789999999999876 344556678
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|+++..+. ...++...+... .++.|+++++||+|+..... ++.+.++.. .
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---------------~ 144 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPE--EAMKAYHEL---------------L 144 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHH--HHHHHHHHT---------------S
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchH--HHHHHHHHh---------------c
Confidence 899999999999886433 345554444432 24789999999999865321 122222221 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|++++++++.+.+
T Consensus 145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 235799999999999999999998765
No 119
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=1.5e-24 Score=155.13 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCCE--EEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGDI--VFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++++++|++|||||||++++.+..+. .+.+|.+.+ .+.+.+++. .+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4578999999999999999999998876 566666653 466777774 56679999999988888888899999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|.++..++..+..|+..+... ...+.|+++++||+|+.+ ....++........ .+.++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~-----------------~~~~l 169 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-----------------GLSFI 169 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------TCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHc-----------------CCEEE
Confidence 99999988888877777665432 235689999999999865 34455555554332 26789
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||+++.|++++|++|.+.+
T Consensus 170 d~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 170 ETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.1e-25 Score=166.39 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh----------hHhhhh--
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF-- 86 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 86 (194)
.+|+++|++|||||||+|++.+.... ....|.......+.+++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 37999999999999999999988643 233344455677888899999999999887653 455566
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCCCccCccc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
..+|++++|+|+++.+ ....+...+.. .+.|+++|+||+|+.+. ...+.+.+.+ +
T Consensus 82 ~~~d~vi~VvDas~~~---~~~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g----------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLE---RHLYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL---G----------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHH---HHHHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH---C-----------
T ss_pred CCCCEEEEEeeCCCch---hHHHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---C-----------
Confidence 7899999999998843 33333333332 47899999999997542 2223333333 2
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++|+++.+.
T Consensus 141 ------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999999764
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=4.5e-25 Score=161.16 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCc----ceeEEE-eCCEEEEEEEcCCCc----------cchhhH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHP----TSEELS-MGDIVFTTHDLGGHV----------QARRVW 82 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~----~~~~~~-~~~~~~~~~d~~g~~----------~~~~~~ 82 (194)
.+..+|+++|.+|+|||||++++.+.. .....++.+. ....+. .++..+.+|||||.. .+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 357899999999999999999999986 3333333322 233333 345789999999953 334555
Q ss_pred hhhhhc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhhhcccCccCC
Q psy2159 83 RDYFPA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE----VRHFFGLYGLTTG 155 (194)
Q Consensus 83 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e----~~~~~~~~~~~~~ 155 (194)
..++.. +|++++|+|.++..+ .....+...+.. .+.|+++|+||+|+.+.....+ +.+.+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~---- 177 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR---- 177 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh----
Confidence 556655 778999999988533 333333344333 5789999999999976322222 222222110
Q ss_pred CccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
........+++++||++|.|++++|++|.+.+
T Consensus 178 ------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 178 ------DAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp ------HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------hcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 00012447899999999999999999998865
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3.4e-25 Score=166.85 Aligned_cols=147 Identities=22% Similarity=0.247 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh----------hHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~ 86 (194)
+.++|+++|++|||||||+|++++..+. ....|.......+..++..+.+|||||+.++.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4679999999999999999999988743 223344445567777888999999999887552 223333
Q ss_pred --hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCCCccCc
Q psy2159 87 --PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 87 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
+.+|++++|+|+++.+ ....+...+.. .+.|+++|+||+|+.+. ...+++.+.+ +
T Consensus 82 ~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---g--------- 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE---RNLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARL---G--------- 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH---HHHHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH---T---------
T ss_pred hhcCCCEEEEEecCCChH---HHHHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhc---C---------
Confidence 6899999999998843 33344444433 37899999999998542 1223333332 1
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|+++++++|.+.+
T Consensus 143 --------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 --------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=1.1e-23 Score=164.23 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=118.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 86 (194)
....+++++|++|||||||++++.+..+. ....|.+.....+..++..+.+|||||..... .....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 56789999999999999999999988753 24456666677777788999999999985421 2223445
Q ss_pred hcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 87 PAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
..+|++++|+|+++.. ++.....++..+.... .+.|+++|+||+|+......++..+.+...
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~-------------- 308 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKEK-------------- 308 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHT--------------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHhc--------------
Confidence 6799999999998876 5677777777776542 278999999999987633333344433221
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|+|+++++++|.+.+
T Consensus 309 ---~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 309 ---GLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ---TCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---CCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 26789999999999999999998764
No 124
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=1.5e-24 Score=162.95 Aligned_cols=145 Identities=25% Similarity=0.391 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-Ccccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--cC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AV 89 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~~ 89 (194)
..+|+++|++|||||||+|++.+... ....| |.......+.. +..+.+||+||+.++. .....++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 46899999999999999999998753 22222 33333334444 6789999999998765 44555665 59
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|++++|+|+++. .....|...+.. .+.|+++++||+|+.. ....+++.+.+ .
T Consensus 82 d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g-------------- 137 (272)
T 3b1v_A 82 DSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL---G-------------- 137 (272)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--------------
T ss_pred CEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---C--------------
Confidence 999999999884 344455555544 4789999999999753 12223333322 2
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 138 ---~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ---VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=4.7e-24 Score=160.48 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhh--hc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PA 88 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~ 88 (194)
+..+|+++|++|||||||+|++.+..+. . ...|.......+..++..+.+||+||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4579999999999999999999988663 1 22344444567778889999999999887655 455555 67
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+|++++|+|+++. .....++..+... ...|+++++||+|+.+ ....+++.+.++
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------------- 139 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG---------------- 139 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------
Confidence 9999999999883 4455566666553 2389999999999743 223344444332
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 140 ----VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ----SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ----CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998753
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=7.5e-24 Score=169.17 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=113.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCC----------ccchhhHh-h
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGH----------VQARRVWR-D 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 84 (194)
...+|+++|.+|+|||||+|++.+..... ...|.+.....+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 55899999999999999999999887642 333445555678889999999999998 33443333 4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++.+|++++|+|+++..++... .++..+.. .++|+++|+||+|+.+... .+++.+.+....
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l----------- 317 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----------- 317 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC-----------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhc-----------
Confidence 67889999999999998877664 34444433 5799999999999976432 344544433221
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+.+.+.+
T Consensus 318 -~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 318 -QFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp -GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -ccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 112236799999999999999999987653
No 127
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=6.1e-24 Score=170.71 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=116.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCc-cch--------hhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHV-QAR--------RVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 86 (194)
..++|+++|.+|+|||||+|++.+.+.. ....|.++....+.+++..+.+|||||+. +.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 3479999999999999999999987643 34456677778899999999999999987 543 2234568
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|++++.++... ..+ +.+ .++|+++|+||+|+.+....+++.+...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------------------ 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------------------ 376 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------------------
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------------------
Confidence 899999999999998777553 233 332 3689999999999977555556555432
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 114689999999999999999998753
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=5.5e-24 Score=170.83 Aligned_cols=154 Identities=20% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhH--------hhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 86 (194)
...++|+++|++|+|||||+|++.+.... ....|.+.....+.+++..+.+|||||+.++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45678999999999999999999987643 23335555667888999999999999997755332 3467
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|++++.++.....+. .++... .++|+++|+||+|+.+....+. +.+...
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~---------------- 369 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG---------------- 369 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----------------
T ss_pred ccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----------------
Confidence 8899999999999988886433222 222221 3789999999999977543321 112110
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 370 ~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 370 TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 015689999999999999999998764
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=5.6e-24 Score=170.79 Aligned_cols=158 Identities=12% Similarity=0.142 Sum_probs=115.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCC----------CccchhhHh-
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGG----------HVQARRVWR- 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 83 (194)
....+++++|.+|+|||||++++.+.... ....|.+.....+..++..+.+||||| ++++.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999977643 233345555677888999999999999 566665544
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
.+++.+|++++|+|+++.. .....++...+.. .++|+++|+||+|+.+ ....+++.+.++...
T Consensus 273 ~~~~~ad~~llviD~~~~~--~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 337 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI--IEQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF---------- 337 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCc--CHHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----------
Confidence 3678999999999998843 3444444444443 5799999999999975 334455555554432
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+++.+.+
T Consensus 338 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 338 --QFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp --GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred --ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 122346799999999999999999998754
No 130
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=1.8e-23 Score=165.47 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=115.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCc-------------------ceeEEEeCCEEEEEEEcC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHP-------------------TSEELSMGDIVFTTHDLG 73 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~-------------------~~~~~~~~~~~~~~~d~~ 73 (194)
...++++|+++|++++|||||+++|.+...... ..+.+. ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 346789999999999999999999998543211 111000 000001122789999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhhhcc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED----EVRHFFGL 149 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----e~~~~~~~ 149 (194)
|++++...+...+..+|++++|+|+++..++.+...++..+... ...|+++++||+|+.+....+ ++.+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999899999999999999999987788888777665443 236899999999997632222 22222221
Q ss_pred cCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|+++++++|.+.+
T Consensus 161 --------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 --------------TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp --------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred --------------hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 223357899999999999999999998755
No 131
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=3.8e-23 Score=150.47 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=120.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc----CCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA----VDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~d~ii 93 (194)
..+..+|+++|++|+|||||++++.+..+....++..++.. ..+....+.+||+||++++...+..+++. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 45778999999999999999999999876543222222221 11245789999999999998888888877 89999
Q ss_pred EEEECC-CCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc----c-----------CccC
Q psy2159 94 FIIDAS-DRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASEDEVRHFFGL----Y-----------GLTT 154 (194)
Q Consensus 94 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~----~-----------~~~~ 154 (194)
+|+|++ ++.++.....|+..++... ...+.|+++|+||+|+......+++.+.+.. . .+..
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~ 167 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 167 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999 8889999999988887642 2367999999999999876554432221110 0 0000
Q ss_pred -----------C--CccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 155 -----------G--KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 155 -----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
. ....+........+.++.+|+..+ +++++++|+.+.
T Consensus 168 ~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~-~i~~~~~~~~~~ 217 (218)
T 1nrj_B 168 NEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWREWIDEK 217 (218)
T ss_dssp ---------CTTC----CCCGGGSSSCEEEEECBTTTT-BCHHHHHHHHHH
T ss_pred ccccchhhhcccccCCCCccccccCCceEEEeccccCC-cHHHHHHHHHhh
Confidence 0 001111112233567888888776 699999999764
No 132
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.90 E-value=4.7e-24 Score=165.26 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=106.3
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|+|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 5555566777888999999999999999999999999999999999998 567889999999998876667
Q ss_pred CCcEEEEeeCCCCCC-----------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 122 DVPILILGNKIDIFD-----------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-----------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
+.|+++++||+|+.. ..+.++..+++......- ........+.+++|||+++.||++
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l------~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDL------NKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTT------CSCTTTCCEEEEECCTTCHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHh------hcccCCCceEEEEEECcCchhHHH
Confidence 899999999999852 244566665554211000 000013457899999999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+++.+.+
T Consensus 334 vF~~v~~~i 342 (353)
T 1cip_A 334 VFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=7.2e-24 Score=163.68 Aligned_cols=155 Identities=23% Similarity=0.349 Sum_probs=117.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCcc----chhhHhhh---hhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRDY---FPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~----~~~~~~~~---~~~~d 90 (194)
.+|+++|.++||||||++++...+.. ...+|..++...+.+++ ..+.+||+||+.+ ...+...+ +..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36889999999999999999987642 35678888888888886 8999999999643 33343444 44599
Q ss_pred EEEEEEECCC---CCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASD---RSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++++|+|+++ ..++.....|+.++..... ..++|+++|+||+|+... .+++....+... .
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~--------------~ 302 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEKLT--------------D 302 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHHCC--------------S
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHHhh--------------c
Confidence 9999999988 6778888888877766532 357999999999998652 122222222111 0
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++++|+++++++|.+.+
T Consensus 303 -~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 303 -DYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp -CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 15689999999999999999998875
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=7.1e-24 Score=167.70 Aligned_cols=150 Identities=18% Similarity=0.289 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCE-EEEEEEcCCCccchhh-------Hhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQARRV-------WRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~~~~ 87 (194)
...+|+++|+.|+|||||++++.+..+. ....|..+....+.+.+. .+.+|||||+.++... ...++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 5679999999999999999999988764 234456666777887774 9999999999876543 455788
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+. .......|+..+.. .+.|+++|+||+|+......+......+...
T Consensus 113 ~aD~vllVvD~~---~~~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g---------------- 169 (423)
T 3qq5_A 113 RADCGILVTDSA---PTPYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAEELKGLYESRYE---------------- 169 (423)
T ss_dssp SCSEEEEECSSS---CCHHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCTHHHHHSSCCTT----------------
T ss_pred cCCEEEEEEeCC---ChHHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHHHHHHHHHHHcC----------------
Confidence 899999999982 23445566666554 3789999999999987554434333333322
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 170 -~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 170 -AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp -CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5799999999999999999999876
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=2.9e-23 Score=165.86 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=103.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc---------chhhHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 88 (194)
.+|+++|.||||||||+|++.+.+... ...|.+.....+..++..+.+|||||+.. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 378999999999999999999887542 33344555778888999999999999764 23456667899
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH-HhhhcccCccCCCccCcccccCCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEV-RHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. ..+. .+.. . .+.
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~--------------lg~- 139 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-S--------------LGF- 139 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-G--------------GSS-
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-h--------------cCC-
Confidence 99999999998754433 3344444433 468999999999974310 1122 2221 1 111
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++||++|.|++++++++.+.+
T Consensus 140 -~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 140 -GEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp -CSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred -CCEEEEeccCCCCHHHHHHHHHHhc
Confidence 2479999999999999999998754
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=4.4e-22 Score=157.71 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----cccc--CCCcceeEEEe---------------C--------CEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMP--TLHPTSEELSM---------------G--------DIVFTT 69 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 69 (194)
++.++|+++|+.++|||||+++|.+.... ...+ |++........ + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 46789999999999999999999965332 1222 55544332222 1 168999
Q ss_pred EEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----CHHHHHh
Q psy2159 70 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA----SEDEVRH 145 (194)
Q Consensus 70 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----~~~e~~~ 145 (194)
||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.. ..+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999998887777788899999999999764344444444433222 235899999999997632 2345555
Q ss_pred hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 146 FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+... .....+++++||++|.|+++++++|.+.+
T Consensus 163 ~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGT--------------IAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTS--------------TTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhc--------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 55431 12347899999999999999999998755
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=1.2e-23 Score=168.04 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=100.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCc--------cchhhHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+.....+.++.+.+ ...+..++..+.+|||||+. ++...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999998776555555443 44555677899999999986 4556677788999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. .+..+.. . .+ .-
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~-~--------------lg--~~ 139 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-S--------------LG--FG 139 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCSSG-G--------------GS--SC
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHH-H--------------cC--CC
Confidence 9999999998865544 3456665544 578999999999986521 1111111 0 11 12
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++||++|.|++++++++.+.+
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhc
Confidence 589999999999999999998765
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.89 E-value=2.5e-22 Score=153.08 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCc-cc--------hhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHV-QA--------RRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~-~~--------~~~~~~~ 85 (194)
.+..+++++|++|||||||+|++.+.++..+. .|.....+.+..++..+.+|||||+. .. ......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34568899999999999999999998764322 23333345667788999999999987 32 2223456
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
++.+|++++|+|.++ +.....++...+.. .+.|+++++||+|+... .+.+.+.+.... ..
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~------------~~ 145 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLA------------SQ 145 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHH------------TT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHH------------Hh
Confidence 778999999999976 44444455555443 57899999999998651 233333332211 00
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....++++||++|.|++++++++.+.+
T Consensus 146 ~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred cCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 1113689999999999999999998764
No 139
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=5.9e-24 Score=172.22 Aligned_cols=158 Identities=19% Similarity=0.148 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+++.+|+++|++++|||||+++|.+..+. ....|.......+.. ++..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999999976654 223344555555555 45789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA---SEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
|+|+++... ......+..+.. .+.|+++++||+|+.... ..+++...- ... . ......++
T Consensus 82 VVDa~dg~~-~qt~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~-~~~----------e-~~~~~~~i 144 (537)
T 3izy_P 82 VVAADDGVM-KQTVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYD-VVC----------E-DYGGDVQA 144 (537)
T ss_dssp ECBSSSCCC-HHHHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTT-SCC----------C-CSSSSEEE
T ss_pred EEECCCCcc-HHHHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhh-hhH----------H-hcCCCceE
Confidence 999998653 334444444433 478999999999987521 112222211 100 0 11124689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++++++...+
T Consensus 145 v~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhHHHHHHHhh
Confidence 9999999999999999998753
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=8.9e-23 Score=164.50 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=113.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC----CC------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR----TA------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~----~~------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
.++++|+++|+.++|||||+++|.+.. .. ....|.+.....+.+++..+.+||+||++++...+...+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 467899999999999999999999876 21 12346666667788889999999999999998888888999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
+|++++|+|+++.. ..+..+.+..+.. .+.|.++++||+|+.+....+++.+.+.... ... ...
T Consensus 97 aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l----------~~~~~~~ 161 (482)
T 1wb1_A 97 IDLALIVVDAKEGP-KTQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL----------QSTHNLK 161 (482)
T ss_dssp CCEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH----------HHSSSGG
T ss_pred CCEEEEEEecCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHH----------hhhcccc
Confidence 99999999998743 3334444443322 4688899999999976322222322222111 001 122
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhh
Confidence 46899999999999999999998754
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2.6e-23 Score=166.35 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhhH--------hhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 86 (194)
...++|+++|++|+|||||+|++.+..... ...|.+.....+..++..+.+|||||+.+....+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 356789999999999999999999865432 2233444456788899999999999986654322 3357
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|.+++.+... ..++..+ ...|+++|+||+|+....... ..+. . .
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~--------------~-~ 355 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY--------------P-E 355 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC--------------C-T
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH--------------h-c
Confidence 88999999999998765544 3344443 236999999999987632211 1111 0 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 235799999999999999999998764
No 142
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=1.6e-22 Score=154.64 Aligned_cols=136 Identities=18% Similarity=0.302 Sum_probs=104.3
Q ss_pred cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCC
Q psy2159 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDAL 120 (194)
Q Consensus 51 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (194)
||+|.....+..++..+++||++|++++++.|..++++++++++|+|++ +.+++.+...++..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3566666778888999999999999999999999999999999999665 566788888899999887777
Q ss_pred CCCcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 121 TDVPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 121 ~~~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
.+.|+++++||+|+.. ..+.++..+++....... .....+.+.++++||+++.||
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~-------~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL-------NPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS-------CTTTTSCEEEEECCTTCHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh-------cccccCCcEEEEEEeecCHHH
Confidence 8899999999999754 134444444432111000 001234578899999999999
Q ss_pred HHHHHHHhhhc
Q psy2159 183 GNGFRWLANYI 193 (194)
Q Consensus 183 ~~l~~~l~~~i 193 (194)
+++|+.+.+.+
T Consensus 306 ~~vF~~v~~~I 316 (327)
T 3ohm_A 306 RFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=4.3e-22 Score=159.11 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=108.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh------------Hh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV------------WR 83 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------------~~ 83 (194)
..++++++|++|||||||+|++.+.... ....|.++..+.+.+++..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4579999999999999999999988653 2333455566788899999999999998543221 12
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhhhcccCccCCCccCcc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
.+++.+|++++|+|+++..+... .++...+.. .++|+++++||+|+.+.. ..+++.+.+....
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 323 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL---------- 323 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----------
Confidence 35678999999999988665544 334444333 578999999999987632 2344443332211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+.+.+.+
T Consensus 324 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 324 --YFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp --GGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --ccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 112235799999999999999999987643
No 144
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.88 E-value=9.1e-23 Score=158.59 Aligned_cols=135 Identities=21% Similarity=0.391 Sum_probs=95.5
Q ss_pred CCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCCC
Q psy2159 53 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALTD 122 (194)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (194)
.|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.+...++..+.......+
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 334444567788999999999999999999999999999999999998 6789999999999987766678
Q ss_pred CcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 123 VPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 123 ~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.|+|+++||+|+.. ..+.++..+++...... .........+.+++|||+++.||++
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG------KRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT------TCSSCC--CCEEEECCTTCHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEecCCchhHHH
Confidence 99999999999852 14455555543110000 0000003457899999999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+++.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.88 E-value=6.7e-22 Score=156.77 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=112.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----cccc--CCCcceeEEEe------------------C-----CEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMP--TLHPTSEELSM------------------G-----DIVFT 68 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~--t~~~~~~~~~~------------------~-----~~~~~ 68 (194)
..+.++|+++|+.++|||||+++|.+.... ...+ |++.......+ + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 356789999999999999999999964322 2222 55544433322 1 16899
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----CHHHHH
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA----SEDEVR 144 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----~~~e~~ 144 (194)
+||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.. ..+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999998887777788899999999999754344444444333222 235899999999997632 123344
Q ss_pred hhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 145 HFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+... .....+++++||++|.|+++++++|.+.+
T Consensus 164 ~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 164 EFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 443321 12347899999999999999999998755
No 146
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=9.2e-23 Score=163.72 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCC--------CccchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGG--------HVQARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~ 86 (194)
....+|+++|.+|||||||+|++.+..+..+.++.+.+ ...+...+..+.+||||| ++++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 34568999999999999999999998766444444444 344555678999999999 666777788889
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|..+ ++.....++..++.. .++|+++|+||+|+.+.. .+..+... .+
T Consensus 101 ~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~---------------lg- 157 (456)
T 4dcu_A 101 DEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS---------------LG- 157 (456)
T ss_dssp HHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG---------------GS-
T ss_pred hhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH---------------cC-
Confidence 99999999999876 455556667777655 689999999999985421 11111111 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++||++|.|+.++++++.+.+
T Consensus 158 -~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 158 -FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CCceEEeecccccchHHHHHHHHhhc
Confidence 12357999999999999999998764
No 147
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.88 E-value=1.6e-21 Score=158.31 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC------------------CCCc-------cccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND------------------RTAQ-------HMPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+..+|+++|++|+|||||+++|+.. .+.. ...|.......+.+++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4468999999999999999999621 1111 23356666778888999999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+.++...+..+++.+|++++|+|+++....... ..|..+.. .++|+++++||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999999999999999999999999987655443 34444433 47899999999999764
No 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.88 E-value=2.9e-22 Score=156.50 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=112.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
+|+++|++++|||||+++|. ....|++.....++.++..+.+|||||++++.......++.+|++++|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 89999999999999999998 45667777777777788899999999999998877778899999999999 43 4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcE-EEEee-CCCCCCCCCH----HHHHhhhcccCccCCCccCcccccCCcceEEEE--e
Q psy2159 103 RFPESKYELDNLLADDALTDVPI-LILGN-KIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFM--C 174 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~pi-iiv~n-K~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 174 (194)
.+.+...++..+.. .+.|. ++++| |+|+ +.... +++.+.++.. ....+++++ +
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--------------~~~~~~ii~~~~ 156 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--------------VLQDWECISLNT 156 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--------------TTTTCEEEECCC
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--------------CCCceEEEeccc
Confidence 56666666655543 35677 89999 9999 42111 2333333321 223478999 9
Q ss_pred cccc---CCChHHHHHHHhhhc
Q psy2159 175 SVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~---~~~v~~l~~~l~~~i 193 (194)
||++ ++|+++++++|.+.+
T Consensus 157 SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 157 NKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CTTSSSTTTTHHHHHHHHHHHH
T ss_pred ccccCcCCCCHHHHHHHHHhhc
Confidence 9999 999999999998764
No 149
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=3.4e-22 Score=149.39 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=103.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccc---cCCCcceeEEEeCCEEEEEEEcCCCccch-----------hh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHM---PTLHPTSEELSMGDIVFTTHDLGGHVQAR-----------RV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~ 81 (194)
..+.++|+++|++|||||||++++.+.... ... .|.......+..++..+.+|||||+.... ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999987733 222 34455566778889999999999986542 22
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHH-HHHHhCC-CCCCCcEEEEee-CCCCCCCCCHHH---------HHhhhcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYEL-DNLLADD-ALTDVPILILGN-KIDIFDAASEDE---------VRHFFGL 149 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~-~~~~~~~-~~~~~piiiv~n-K~D~~~~~~~~e---------~~~~~~~ 149 (194)
...+++.+|++++|+|++. +.....++ ..+.... .....|+++++| |+|+... ...+ +...+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2335788999999999986 33333222 2222110 011457777777 9999753 3333 2222222
Q ss_pred cCccCCCccCcccccCCcceEE--EEeccccCCChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMEL--FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ..+...+ +++||++|.|++++|++|.+.+
T Consensus 175 ~--------------~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 175 C--------------GGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp T--------------TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred h--------------CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 1 1111112 8899999999999999998764
No 150
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.88 E-value=2e-21 Score=151.39 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=106.1
Q ss_pred CCe-EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCcc---------chhhHhhhhh
Q psy2159 21 SGK-LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFP 87 (194)
Q Consensus 21 ~~~-i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~ 87 (194)
.++ ++++|++|||||||+|++.+..+. ...+|.++....+.+++..+.+|||+|..+ +.+.+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 889999999999999999988762 467788888899999999999999999722 22333 3478
Q ss_pred cCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 88 AVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
.+|++++|+|++++. ...... .+..++......+.|+++|+||+|+.... ..+....+.... ....
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~----------~~l~ 324 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLS----------KELY 324 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHH----------HHHC
T ss_pred hCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHH----------HHhc
Confidence 899999999998865 233332 23333333233578999999999987642 222111110000 0010
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 1225689999999999999999998754
No 151
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.88 E-value=7.2e-22 Score=156.35 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--------CCCc------------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--------RTAQ------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.++.++|+++|++++|||||+++|.+. .+.. ...|.......+..++..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457789999999999999999999873 2211 11233333445556678999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYG 151 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~ 151 (194)
+...+...+..+|++++|+|+++.. +.+...++..+.. .+.| +++++||+|+..+.. .+ ++.+.++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9888888899999999999998865 4555566655443 3677 899999999975211 11 2333333322
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCC------------------hHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQG------------------FGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------v~~l~~~l~~~i 193 (194)
.....++++++||++|.| +.+++++|.+.+
T Consensus 163 ------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 ------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp ------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ------------ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 122346899999999987 888998887754
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=1.1e-22 Score=162.32 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCCc--------------------------------cccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTAQ--------------------------------HMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 64 (194)
++.++|+++|++++|||||+++|... .+.. ...|++.....++.++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 2221 2235555556677788
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHH-------HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-------SKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
..+.+|||||+.++...+..+++.+|++++|+|+++ .+|+. ....+...... ...|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999888889999999999999998 45553 23333222221 22468999999999762
Q ss_pred -CC-------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 -AS-------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 -~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
.. .+++.+.+.... .....++++++||++|.|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCcccccc
Confidence 11 123333333222 1222478999999999999743
No 153
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.7e-22 Score=164.10 Aligned_cols=158 Identities=20% Similarity=0.124 Sum_probs=109.8
Q ss_pred HHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----------------------------------cccCCCccee
Q psy2159 13 LRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------------------------------HMPTLHPTSE 58 (194)
Q Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----------------------------------~~~t~~~~~~ 58 (194)
..+...+++++|+++|++++|||||+++|.+..... ...|......
T Consensus 159 ~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~ 238 (611)
T 3izq_1 159 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 238 (611)
T ss_dssp --CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCC
T ss_pred HHHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeE
Confidence 334445678999999999999999999998763221 2235566667
Q ss_pred EEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC---CCh---HHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRF---PESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 59 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~---~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
.+..++..+.+|||||++++...+..+++.+|++++|+|+++. .++ ......+... .. ....|+++|+||+
T Consensus 239 ~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKi 315 (611)
T 3izq_1 239 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKM 315 (611)
T ss_dssp EEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECT
T ss_pred EEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecc
Confidence 7888889999999999999999889999999999999999873 111 1222222222 22 1234699999999
Q ss_pred CCCCC--CCHHHHH----hhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 133 DIFDA--ASEDEVR----HFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 133 D~~~~--~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
|+.+. ...+++. ..+.... .....++++++||++|.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCcccc
Confidence 98762 1122223 3332222 2223578999999999999865
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.87 E-value=1.1e-21 Score=156.51 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=106.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.+++++|+++|++++|||||+++|....-. ....|++.....++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 357789999999999999999999654211 0122444445567778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCC---h---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---F---PESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...++.+|++++|+|+++... | .+....+..... .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8999999999999999988888999999999999988532 1 233333333322 3556 999999999864
Q ss_pred CC----CHHHH----HhhhcccCccCCCccCcccccC-CcceEEEEeccccCCChHHHHH
Q psy2159 137 AA----SEDEV----RHFFGLYGLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 137 ~~----~~~e~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.. ..+++ ...+.... .. ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence 21 12222 22222221 11 1247899999999999999554
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.4e-23 Score=146.48 Aligned_cols=130 Identities=25% Similarity=0.394 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc----CCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+....++..++.. ..+.+..+.+||+||+..+...+..++.. +|++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 5778999999999999999999999876542222222221 12356789999999999887777777765 899999
Q ss_pred EEECC-CCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 95 IIDAS-DRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 95 v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
|+|++ +..++.....|+..++... ...+.|+++|+||+|+......+++.+.+..
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 99999 7778888888888876542 2357999999999999887777777776643
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=9.7e-22 Score=149.58 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-------cccCC-----------------C---
Q psy2159 4 IWTKFREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTL-----------------H--- 54 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~-----------------~--- 54 (194)
+...+++.+..++.. ....+|+++|.+|||||||+|++.+..+.. ..|+. +
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 334445555555543 467799999999999999999999987631 11210 0
Q ss_pred cce---------------------------eEEEeC-CEEEEEEEcCCCc-------------cchhhHhhhhhcCCEEE
Q psy2159 55 PTS---------------------------EELSMG-DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV 93 (194)
Q Consensus 55 ~~~---------------------------~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~ii 93 (194)
.+. ..+... ...+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 000 001111 3689999999964 23456667788888776
Q ss_pred -EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 94 -FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 94 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+|+++..+......++..+ . ..+.|+++|+||+|+.+... .+.+...+.. ......+
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~ 228 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENKLLP--------------LRRGYIG 228 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSC--------------CTTCEEE
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhCCcCc--------------CCCCcEE
Confidence 689998754333322333333 2 25789999999999976322 2222111100 1112357
Q ss_pred EEEeccccCCChHHHHHHHhh
Q psy2159 171 LFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
++++||++|.|++++++++.+
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHH
T ss_pred EECCChhhccccccHHHHHHH
Confidence 899999999999999999765
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=8.2e-22 Score=159.19 Aligned_cols=153 Identities=18% Similarity=0.077 Sum_probs=106.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.++.++|+++|++++|||||+++|.+.... ....|.......+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 567899999999999999999999755110 0123455556667778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCCh------HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..+.+|||||++++...+..+++.+|++++|+|+++..++ ......+...... ...|+++++||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence 89999999999999999999999999999999999886432 2222222222221 23579999999998762
Q ss_pred --CCHHHHHhhh----cccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 --ASEDEVRHFF----GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 --~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
...+++.+.+ .... .....++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHT------------CCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeeecCCCcccc
Confidence 2223333333 2222 2223578999999999999853
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=6.4e-22 Score=156.21 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-------CCCc------------cccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-------RTAQ------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
++++|+++|++++|||||+++|.+. .+.. ...|++.....+..++..+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5689999999999999999999873 1111 11133333334555668999999999999888
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-----HHHHHhhhcccCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-----EDEVRHFFGLYGLTT 154 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-----~~e~~~~~~~~~~~~ 154 (194)
.+...++.+|++++|+|+++.. ..+....+..+.. .+.| +++++||+|+..+.. .+++.+.++...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~--- 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG--- 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhhHhhCCEEEEEEECCCCC-CHHHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC---
Confidence 8888899999999999998864 4444555544432 4677 789999999975211 123334443322
Q ss_pred CCccCcccccCCcceEEEEeccccCCC----------hHHHHHHHhhhc
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQG----------FGNGFRWLANYI 193 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------v~~l~~~l~~~i 193 (194)
.....++++++||++|.| +.++++.|.+.+
T Consensus 154 ---------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 154 ---------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp ---------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ---------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 222346899999999764 899999998755
No 159
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=6.2e-23 Score=165.03 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+++.+|+++|++++|||||++++.+..+.. ...|.......+..++..+.+|||||++.+...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998754432 12244444445566778899999999999999888889999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++.. ..+....+..... .+.|+++++||+|+.... .+++...+.... .....+ ...++++++|
T Consensus 82 Vda~~g~-~~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~-------~~~~~~-~~~~~~v~vS 147 (501)
T 1zo1_I 82 VAADDGV-MPQTIEAIQHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYG-------ILPEEW-GGESQFVHVS 147 (501)
T ss_dssp EETTTBS-CTTTHHHHHHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCC-------CCTTCC-SSSCEEEECC
T ss_pred eecccCc-cHHHHHHHHHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhh-------hhHHHh-CCCccEEEEe
Confidence 9998743 2333333333322 578999999999996531 112222221110 001111 1247899999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|.|++++++++..+
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998753
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=2.3e-21 Score=159.16 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC--C------ccc----------cCCCcceeEEEeC-----CEEEEEEEcCCCcc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT--A------QHM----------PTLHPTSEELSMG-----DIVFTTHDLGGHVQ 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~--~------~~~----------~t~~~~~~~~~~~-----~~~~~~~d~~g~~~ 77 (194)
-.+|+++|+.++|||||++++..... . .+. .|+......+.+. +..+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35899999999999999999986321 1 111 1222222344443 27899999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~ 157 (194)
+...+...++.+|++++|+|+++..+......|.... . .+.|+++++||+|+.... .++..+.+....
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l------ 151 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV------ 151 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh------
Confidence 9999999999999999999999977766665554443 3 478999999999997743 333333332211
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++++++.+.+
T Consensus 152 -------g~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 152 -------GIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp -------CCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred -------CCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 11113489999999999999999998876
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=3.3e-21 Score=158.00 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC--CC------cc----------ccCCCcceeEEEeC---C--EEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR--TA------QH----------MPTLHPTSEELSMG---D--IVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~--~~------~~----------~~t~~~~~~~~~~~---~--~~~~~~d~~g~~ 76 (194)
+..+|+++|+.++|||||++++.... .. .+ ..|+......+.+. + ..+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34589999999999999999997631 11 11 11222222344442 2 789999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~ 156 (194)
++...+..+++.+|++++|+|+++..+......|.... . .+.|+++++||+|+.... .++..+.+....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l----- 153 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL----- 153 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-----
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-----
Confidence 99988888899999999999999977666655554433 3 478999999999997643 444333332211
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++++++.+.+
T Consensus 154 --------g~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 154 --------GLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp --------CCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred --------CCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 11123589999999999999999998876
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=2.1e-21 Score=154.89 Aligned_cols=153 Identities=19% Similarity=0.131 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---c----------c-----------------------ccCCCcceeEEEe
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---Q----------H-----------------------MPTLHPTSEELSM 62 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~----------~-----------------------~~t~~~~~~~~~~ 62 (194)
.+.++|+++|++++|||||+++|.+.... . . ..|+......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999865311 0 0 1122333345566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--E 140 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~ 140 (194)
++..+.+|||||++++...+..++..+|++++|+|+++.. ..+...++..+... ...|+++++||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 7789999999999999888888899999999999998864 44445544443322 2246999999999976211 1
Q ss_pred HHHHhhhcccCccCCCccCcccccC--CcceEEEEeccccCCChHHH
Q psy2159 141 DEVRHFFGLYGLTTGKEFTPREILQ--MRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 141 ~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l 185 (194)
+++.+.+.... ...+ ...++++++||++|.|++++
T Consensus 178 ~~i~~~~~~~~----------~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFA----------EGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHH----------HTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHH----------HHhCCCccCceEEEEeccCCCCcccc
Confidence 12222221110 0012 34478999999999999874
No 163
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.86 E-value=9.6e-22 Score=150.93 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=104.1
Q ss_pred cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCC
Q psy2159 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDAL 120 (194)
Q Consensus 51 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (194)
+|.|.....+..++..+++||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3566666778888899999999999999999999999999999999998 677899999999999887777
Q ss_pred CCCcEEEEeeCCCCCCC-----------------CCHHHHHhhhcccC------ccCCCccC----cccccCCcceEEEE
Q psy2159 121 TDVPILILGNKIDIFDA-----------------ASEDEVRHFFGLYG------LTTGKEFT----PREILQMRPMELFM 173 (194)
Q Consensus 121 ~~~piiiv~nK~D~~~~-----------------~~~~e~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~ 173 (194)
.+.|+++++||+|+..+ ...++..+++.... ........ .......+.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 88999999999997531 12333333322111 00000000 00000114578999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+++.||+.+|+.+.+.|
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999987754
No 164
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.86 E-value=5.9e-22 Score=153.51 Aligned_cols=129 Identities=20% Similarity=0.318 Sum_probs=91.3
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
...+.+||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+.......+.|+++++||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 478999999999999999999999999999999998 7778999999999998765567899999999999
Q ss_pred CCCC----CC-------------------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 134 IFDA----AS-------------------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 134 ~~~~----~~-------------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
+..+ .+ .++..+.+........... .......+.+.+++|||+++.||+++|+++.
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~-~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQN-TAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHT-CCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhcc-ccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 7431 11 2233332211000000000 0000012345679999999999999999998
Q ss_pred hhc
Q psy2159 191 NYI 193 (194)
Q Consensus 191 ~~i 193 (194)
+.+
T Consensus 341 ~~I 343 (354)
T 2xtz_A 341 ETL 343 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 165
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2.7e-21 Score=142.77 Aligned_cols=157 Identities=10% Similarity=0.105 Sum_probs=101.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-c----ccCCCcceeEEEeCCEEEEEEEcCCCc-----------cchhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-H----MPTLHPTSEELSMGDIVFTTHDLGGHV-----------QARRV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~~~ 81 (194)
..+.++|+++|++|||||||+|++.+..+.. . ..|.......+..++..+.+|||||.. ++...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999987642 1 345555667788899999999999943 33444
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHH--------HHHhhhcccCc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASED--------EVRHFFGLYGL 152 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~--------e~~~~~~~~~~ 152 (194)
+...++++|++++|+|+++... ....++..+.... .....|+++|+||+|+......+ ++....+...
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~- 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG- 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-
T ss_pred HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-
Confidence 5555678899999999976443 2233333333211 01246999999999987643322 3333333322
Q ss_pred cCCCccCcccccCCcceEEEEeccc-----cCCChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVL-----KRQGFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~l~~~l~~~i 193 (194)
..++.+++. .+.++.++++.+.+.+
T Consensus 183 ----------------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 183 ----------------DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp ----------------SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 235555544 3468999998876643
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.85 E-value=7.6e-21 Score=141.09 Aligned_cols=155 Identities=11% Similarity=0.121 Sum_probs=100.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-----ccCCCcceeEEEeCCEEEEEEEcCCC--------ccchhhHhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----MPTLHPTSEELSMGDIVFTTHDLGGH--------VQARRVWRD 84 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~--------~~~~~~~~~ 84 (194)
..+.++|+++|.+|||||||+|++.+...... ..|..........++..+.+|||||. +++......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 35778999999999999999999998876421 24556666778889999999999996 333332333
Q ss_pred hh----hcCCEEEEEEECCCCCChHHHHHH-HHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHH---------HHhhhc
Q psy2159 85 YF----PAVDAIVFIIDASDRSRFPESKYE-LDNLLAD--DALTDVPILILGNKIDIFDAASEDE---------VRHFFG 148 (194)
Q Consensus 85 ~~----~~~d~ii~v~d~~~~~~~~~~~~~-~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e---------~~~~~~ 148 (194)
++ .++|++++|+|++. +.....+ +..+... ....+.|+++++||+|+... ..++ +...++
T Consensus 98 ~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~-~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR---FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG-SLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCC---CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC-CHHHHHhhcccHHHHHHHH
Confidence 33 89999999999975 3233222 2222221 11236899999999999663 2222 333333
Q ss_pred ccCccCCCccCcccccCCcceEEEEeccc-----cCCChHHHHHHHhhhc
Q psy2159 149 LYGLTTGKEFTPREILQMRPMELFMCSVL-----KRQGFGNGFRWLANYI 193 (194)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~l~~~l~~~i 193 (194)
..+ ..++.+++. .+.|+++|++.+.+.+
T Consensus 174 ~~g-----------------~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~ 206 (247)
T 3lxw_A 174 ECG-----------------GRVCAFDNRATGREQEAQVEQLLGMVEGLV 206 (247)
T ss_dssp HTT-----------------TCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcC-----------------CeEEEEeCCCCccccHHHHHHHHHHHHHHH
Confidence 322 234444333 2689999999987754
No 167
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.85 E-value=1.6e-21 Score=160.24 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEE----------------eCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELS----------------MGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 77 (194)
.++.+|+++|++++|||||++++.+..+....+ +.+....... +....+.+|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 467899999999999999999998765433222 2222211110 1123699999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHH
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEV 143 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~ 143 (194)
+...+...++.+|++++|+|+++.-. .+....+..+.. .+.|+++++||+|+..... .+++
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~-~qT~e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFK-PQTQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcc-HhHHHHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 99888888899999999999998421 222333333322 5789999999999965211 0111
Q ss_pred -----------HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 144 -----------RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 144 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+....-.. +.+.... .....++++++||++|.|+++++++|.+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~-e~~~~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFES-ERFDRVT-DFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEE-EEGGGCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcch-HHHHHHH-hccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 11111110000 0000000 01345789999999999999999999864
No 168
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=4.1e-21 Score=144.60 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--cc-------ccCCCcceeEEEe--CC--EEEEEEEcCCCcc-------ch
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--QH-------MPTLHPTSEELSM--GD--IVFTTHDLGGHVQ-------AR 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~~-------~~t~~~~~~~~~~--~~--~~~~~~d~~g~~~-------~~ 79 (194)
..++|+++|.+|+|||||+|++++.... .+ .+|.+.+...... ++ ..+.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3579999999999999999998876543 22 5667666655544 33 5899999999732 22
Q ss_pred hhH-------hhhhh-------------cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 80 RVW-------RDYFP-------------AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 80 ~~~-------~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
.+. ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHH
Confidence 222 22232 377999999776533233333344443 32 789999999999865322
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+..+.+... .....++++++||++++|+++++++|.+.+
T Consensus 162 ~~~~~~~i~~~-------------l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKE-------------IQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH-------------HHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH-------------HHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 22222222111 111236789999999999999999998765
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.84 E-value=6.6e-21 Score=152.84 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=106.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--CCC--------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--RTA--------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 63 (194)
..++++|+++|++++|||||+++|.+. .+. ....|++.....+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456789999999999999999999864 111 1234666666777888
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...+..+|++++|+|+++.. +|+ +....+..... .+.| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 899999999999999988888899999999999998742 221 33333333322 3455 999999999974
Q ss_pred C--CCHHH----HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 137 A--ASEDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 137 ~--~~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
. ...++ +.+.+.... .....++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCcccc
Confidence 1 11122 333332222 1112478999999999998743
No 170
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=2.2e-21 Score=155.88 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=93.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--CCC--------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--RTA--------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.++.++|+++|+.++|||||+++|... .+. ....|++.....+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 356789999999999999999998742 111 1234555555677778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...++.+|++++|+|+++.. +|. +....+..... .+.| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCCC
Confidence 899999999999999888888899999999999998852 332 23333332222 4566 999999999964
Q ss_pred C-CCHH-------HHHhhhccc-CccCCCccCcccccC-CcceEEEEeccccCCChHHHH
Q psy2159 137 A-ASED-------EVRHFFGLY-GLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNGF 186 (194)
Q Consensus 137 ~-~~~~-------e~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~ 186 (194)
. .+.+ ++...+... . .. ...++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence 2 2221 233333321 1 11 124789999999999998754
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.84 E-value=2.6e-20 Score=160.18 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=111.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCC-------CC--------cccc----CCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDR-------TA--------QHMP----TLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~-------~~--------~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
..+.++|+++|++++|||||+++|.+.. +. .... |+......+..++..+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567899999999999999999998631 10 0111 222223345556789999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-H----HHHHhhhcccCc
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-E----DEVRHFFGLYGL 152 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~----~e~~~~~~~~~~ 152 (194)
...+...++.+|++++|+|+++.. +.+...++..+.. .+.| +++++||+|+..+.. . +++.+.+....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G- 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD- 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc-
Confidence 888888899999999999998864 4455555544433 3677 789999999975211 1 23334443322
Q ss_pred cCCCccCcccccCCcceEEEEeccccC--------CChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKR--------QGFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~v~~l~~~l~~~i 193 (194)
.....++++++||++| .|+.+++++|.+.+
T Consensus 447 -----------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 -----------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp -----------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred -----------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 2223478999999999 47999999998754
No 172
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=3.8e-22 Score=164.20 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 64 (194)
++.++|+++|++++|||||+++|+..... ....|.......+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 46678999999999999999999642100 11224444455666677
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---Ch---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDNLLADDALTDVP-ILILGNKIDIFDA 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~ 137 (194)
..+.+|||||+.++...+...+..+|++++|+|+++.. ++ ......+..+.. .+.| +|+|+||+|+...
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccc
Confidence 89999999999999888788889999999999998743 22 233333333322 3455 9999999998651
Q ss_pred --CCH----HHHHhhh-cccCccCCCccCcccccCCcceEEEEeccccCCChH--------------HHHHHHhhhc
Q psy2159 138 --ASE----DEVRHFF-GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--------------NGFRWLANYI 193 (194)
Q Consensus 138 --~~~----~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~l~~~i 193 (194)
... +++...+ .... .....++++++||++|.|+. .|++.|.+.+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 111 2233333 2222 23345789999999999998 7888886643
No 173
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.83 E-value=1.2e-19 Score=138.96 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHhCCc-CCCCeEEEEcCCCCChHHHHHHHHcCCC-Cccc--cCCCcc----------------------
Q psy2159 3 EIWTKFREVLLRLGLW-KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHM--PTLHPT---------------------- 56 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~--~t~~~~---------------------- 56 (194)
.+...+++.+..++.. ....+|+++|.+|||||||+|++.+..+ +... .|..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 84 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEF 84 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhh
Confidence 4556677777777765 5677999999999999999999998876 2100 011110
Q ss_pred -----------------------------------eeE---EEeCCEEEEEEEcCCCcc-------------chhhHhhh
Q psy2159 57 -----------------------------------SEE---LSMGDIVFTTHDLGGHVQ-------------ARRVWRDY 85 (194)
Q Consensus 57 -----------------------------------~~~---~~~~~~~~~~~d~~g~~~-------------~~~~~~~~ 85 (194)
... ...++..+.+|||||..+ +......+
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
T 1jwy_B 85 LHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAY 164 (315)
T ss_dssp SSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHH
Confidence 000 111336799999999753 34456667
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccc
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
+..+|++++|+|.++..........+...+.. .+.|+++|+||+|+..... .+.+...+..
T Consensus 165 ~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~-------------- 227 (315)
T 1jwy_B 165 IKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGRVIP-------------- 227 (315)
T ss_dssp HHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTSSSC--------------
T ss_pred HcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCCCcc--------------
Confidence 88999999999974432111112123333332 5789999999999876332 2222211111
Q ss_pred cCCcceEEEEecccc---CCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~---~~~v~~l~~~l~~~i 193 (194)
......++..+|+.+ +.|+.++++.+.+.+
T Consensus 228 ~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 228 LTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp CTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 112334556667766 899999999876653
No 174
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.82 E-value=1e-18 Score=142.04 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-------------------------ccccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-------------------------QHMPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-------------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+..+|+++|++|+|||||++++...... ....|+......+.+++..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4579999999999999999999863110 011133334456778889999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
+.++......+++.+|++++|+|+++... ......+... .. .+.|+++++||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~-~~t~~~~~~~-~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE-DRTRKLMEVT-RL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHH-TT---TTCCEEEEEECTTSCCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch-HHHHHHHHHH-HH---cCCCEEEEEcCcCCcccc
Confidence 99998888888999999999999988542 3333333333 22 578999999999997643
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.81 E-value=7.2e-19 Score=147.18 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--C------------C-------ccccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--T------------A-------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.+..+|+++|++|+|||||++++.... + . ...+|+......+.+++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 356789999999999999999998321 1 0 234466666677888899999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+...+..+++.+|++++|+|+++..+...... |..+.. .+.|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 99988999999999999999998776655443 334433 47899999999999764
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.81 E-value=1.7e-19 Score=130.30 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCcce--eEEEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTS--EELSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
.+..+++++|++|||||||++++.+..+ ..+.++.+.+. ..+.+++ .+.+||+||+.. +......+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 3556899999999999999999998763 34455555443 2334444 678999999742 22222333
Q ss_pred h---hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCcc
Q psy2159 86 F---PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 86 ~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~ 158 (194)
+ ..++++++++|+++..+... ..+..++.. .+.|+++++||+|+...-. .+.+...+..
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~--------- 168 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA--------- 168 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---------
T ss_pred HHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---------
Confidence 3 46889999999988765432 122222222 5689999999999865211 1233333321
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+.++++||+++.|+++++++|.+.+
T Consensus 169 ------~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 169 ------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------cCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 11236789999999999999999998754
No 177
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=2.4e-19 Score=141.52 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=110.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccc----hh---hHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQA----RR---VWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~---~~~~~~~~~d 90 (194)
..++++|++|||||||++++.+.... ....|..++...+..++ ..+.+||+||..+. .. .+......++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35789999999999999999987532 34556777888888876 88999999997432 11 1222355799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
.+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.+.. ..+
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~ 299 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL 299 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence 999999998 556666666655554431 1135799999999998654222233333322 125
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++.+||++++|+++++++|.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHH
Confidence 799999999999999999998765
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=8.4e-19 Score=131.15 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhh--------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF-------- 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~-------- 86 (194)
.++++|+++|++|+|||||+|++.+....... .|.......+..++..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 47899999999999999999999998764322 245555667788999999999999987654332222
Q ss_pred -hcCCEEEEEEECCCCCChHHH-HHHHHHHHhCC-CCCCCcEEEEeeCCCCCC--CCCHHHHH
Q psy2159 87 -PAVDAIVFIIDASDRSRFPES-KYELDNLLADD-ALTDVPILILGNKIDIFD--AASEDEVR 144 (194)
Q Consensus 87 -~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piiiv~nK~D~~~--~~~~~e~~ 144 (194)
..+|++++|++++... +... ..++..+.... .....|+++|+||+|+.+ ....++..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~ 175 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFS 175 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHH
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHH
Confidence 2789999999987755 5444 34555444321 111259999999999853 34554443
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=2.9e-18 Score=143.04 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+..+++++|+.|+|||||++++.+.... . ...|.......+...+..+++|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568889999999999999999843321 0 112333344566677899999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
...+..+++.+|++++|+|+++... .....++..+.. .+.|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888889999999999999877543 334455555543 478999999999987
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.79 E-value=5.3e-20 Score=143.44 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--cc--------ccCCCcceeEE--EeCC--EEEEEEEcCCC-------cc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QH--------MPTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~--------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 77 (194)
...++|+++|++|+|||||++++++.... .+ .+|.+...... ..++ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45678999999999999999998765432 11 13433333222 2334 47999999999 55
Q ss_pred chhhHh-------hhhhcC-------------CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWR-------DYFPAV-------------DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..++. .++..+ |+++|+++.. ..++......+...+. .+.|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 444332 3455555532 3456666644444332 57899999999998753
Q ss_pred CCHH----HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 138 ASED----EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 138 ~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.... ++.+.++. ..++++++||+++.+ ++.|.++.+.
T Consensus 190 ~ev~~~k~~i~~~~~~-----------------~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 190 KERERLKKRILDEIEE-----------------HNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHHHHHTTC-----------------C-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------------CCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 2221 22233322 236899999999988 6666666554
No 181
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.78 E-value=1.1e-18 Score=135.78 Aligned_cols=170 Identities=15% Similarity=0.141 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCCC-cc--ccCCCcce--------------------
Q psy2159 3 EIWTKFREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QH--MPTLHPTS-------------------- 57 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~--~~t~~~~~-------------------- 57 (194)
.++..+++.+..++.. ....+|+++|.++||||||+|++.+.++. .. ..|..+..
T Consensus 11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 90 (353)
T 2x2e_A 11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKK 90 (353)
T ss_dssp HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcc
Confidence 3445566666666643 46679999999999999999999998763 11 11111110
Q ss_pred -------------------------------eEEEe-CCEEEEEEEcCCCc-------------cchhhHhhhhhcCCEE
Q psy2159 58 -------------------------------EELSM-GDIVFTTHDLGGHV-------------QARRVWRDYFPAVDAI 92 (194)
Q Consensus 58 -------------------------------~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~i 92 (194)
-.+.. +...+.+|||||.. .+..+...++..++.+
T Consensus 91 ~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (353)
T 2x2e_A 91 FTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCL 170 (353)
T ss_dssp BCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeE
Confidence 01111 24679999999963 2344556667666655
Q ss_pred EE-EEECCCCCChHHHH--HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VF-IIDASDRSRFPESK--YELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~-v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++ |+|.+. .+.... .++..+ ...+.|+++|+||+|+.+... ..++ ++... .......
T Consensus 171 iL~v~~a~~--~~~~~~~~~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~----------~~l~~~~ 231 (353)
T 2x2e_A 171 ILAVSPANS--DLANSDALKVAKEV----DPQGQRTIGVITKLDLMDEGTDARDV---LENKL----------LPLRRGY 231 (353)
T ss_dssp EEEEEETTS--CGGGCHHHHHHHHH----CTTCTTEEEEEECGGGSCTTCCCHHH---HTTCS----------SCCTTCE
T ss_pred EEEEecCCC--ccchhHHHHHHHHh----CcCCCceEEEeccccccCcchhHHHH---HhCCc----------ccccCCc
Confidence 55 556544 233322 223332 225789999999999976322 1222 21110 0011223
Q ss_pred eEEEEeccccCCChHHHHHHHhh
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..++++||+++.|++++++++.+
T Consensus 232 ~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 232 IGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EECCCCCHHHHHTTCCHHHHHHH
T ss_pred eEEEeCCcccccccccHHHHHHH
Confidence 57899999999999999998865
No 182
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=3e-18 Score=143.54 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCC-Ccc--------eeEEE-------------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTL-HPT--------SEELS------------------------- 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~-~~~--------~~~~~------------------------- 61 (194)
..+.++|+++|.+|+|||||+|+|.+..... ..|+. .++ ..+..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4578899999999999999999999887542 22222 110 00111
Q ss_pred ---------------------eCC----EEEEEEEcCCCcc---chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHH
Q psy2159 62 ---------------------MGD----IVFTTHDLGGHVQ---ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDN 113 (194)
Q Consensus 62 ---------------------~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 113 (194)
.+. ..+.+|||||... .......++..+|++++|+|++++.+......+. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 111 3589999999765 3455667789999999999999877666554433 3
Q ss_pred HHhCCCCCCCcEEEEeeCCCCCCCC--CH---HH-------HHhh----hcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 114 LLADDALTDVPILILGNKIDIFDAA--SE---DE-------VRHF----FGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 114 ~~~~~~~~~~piiiv~nK~D~~~~~--~~---~e-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
.+.. .+.|+++|+||+|+.... +. ++ +... +.... ...+ ......+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~--~~~g------~~~~~~~v~~vSAk 293 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC--TVEG------QNIYDERVFELSSI 293 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG--BSSS------CBCGGGTEEECCHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh--cccc------cccCCCcEEEEeCh
Confidence 3322 367899999999986421 11 11 2111 11100 0000 01123468999999
Q ss_pred --------------cCCChHHHHHHHhhhc
Q psy2159 178 --------------KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 --------------~~~~v~~l~~~l~~~i 193 (194)
++.|++++++++.+.+
T Consensus 294 ~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 294 QALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999987754
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=1.5e-17 Score=139.33 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--CC-------------------ccccCCCcceeEEEeCC-------EEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--TA-------------------QHMPTLHPTSEELSMGD-------IVFTTH 70 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 70 (194)
.+..+|+++|+.|+|||||+++|.... +. ....|+......+.+++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456799999999999999999997531 11 01223333444566665 899999
Q ss_pred EcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 71 d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
||||+.++...+..+++.+|++++|+|+++...... ...|..... .+.|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999998888889999999999999998654333 334444332 47899999999998763
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.77 E-value=4.5e-19 Score=138.99 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=101.8
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|+|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .++|.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5566666778889999999999999999999999999999999999999 889999999999998876678
Q ss_pred CCcEEEEeeCCCCCCC-----C-C--------------------------HHHHHhhhcccCccCCCccCcccc-----c
Q psy2159 122 DVPILILGNKIDIFDA-----A-S--------------------------EDEVRHFFGLYGLTTGKEFTPREI-----L 164 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~-----~-~--------------------------~~e~~~~~~~~~~~~~~~~~~~~~-----~ 164 (194)
+.|++|++||+|+... . + .++...++... +... .
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~k---------F~~~~~~~~~ 354 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE---------FLRISTASGD 354 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHH---------HHHHHHTSCT
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHH---------HHHhhccccc
Confidence 8999999999997431 0 0 11111111000 0000 0
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+.+++|||+++.||+++|+++.+.+
T Consensus 355 ~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 355 GRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp TSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 11346788999999999999999987654
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=2.2e-17 Score=138.22 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc--CCCC-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN--DRTA-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.+..+|+++|++|+|||||++++.. ..+. ....|+......+.+++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3556899999999999999999984 2211 123355555667888899999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+...+..+++.+|++++|+|+++..+..... .|..+.. .+.|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 9888888899999999999999876555443 3444433 47899999999999764
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=1.4e-19 Score=142.44 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=48.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEE---------------------eCC---EEEEEEEcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELS---------------------MGD---IVFTTHDLGG 74 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~---------------------~~~---~~~~~~d~~g 74 (194)
++|+++|.+|||||||+|++++.... .+..|..++.+... +++ ..+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 47999999999999999999987632 23446666655432 122 5799999999
Q ss_pred Ccc----chhhHh---hhhhcCCEEEEEEECCCC
Q psy2159 75 HVQ----ARRVWR---DYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 75 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 101 (194)
+.+ ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864 222333 346889999999999875
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=2.1e-17 Score=124.03 Aligned_cols=117 Identities=11% Similarity=0.132 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhh-------Hhhh--
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRV-------WRDY-- 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~-- 85 (194)
.+.++|+++|.+|+|||||+|++++..+..+.+ |.......+..++..+.+|||||+.++... +..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467899999999999999999999887643333 233334556678899999999999765421 1111
Q ss_pred hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCC-CCCCcEEEEeeCCCCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDA-LTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 136 (194)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2468999999998664 355443 45554433211 11269999999999865
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.74 E-value=8.8e-18 Score=131.03 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc-c--CCCcc-------------e---------------------------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-P--TLHPT-------------S--------------------------- 57 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~-~--t~~~~-------------~--------------------------- 57 (194)
-.+|+++|++|||||||+|++.+..+.... . |..+. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 348999999999999999999997762111 1 10000 0
Q ss_pred ------------eEE--E-eCCEEEEEEEcCCCccc-------------hhhHhhhhhcCCEEEEEEECCCCCChHHHHH
Q psy2159 58 ------------EEL--S-MGDIVFTTHDLGGHVQA-------------RRVWRDYFPAVDAIVFIIDASDRSRFPESKY 109 (194)
Q Consensus 58 ------------~~~--~-~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 109 (194)
-.+ . .....+.+|||||..+. ......++..+|++++|+|..+.......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-- 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-- 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence 011 1 12356899999998765 55677788999999999987664433222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 110 ELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 110 ~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
+ ..++......+.|+++|+||+|+.+. ...+.+..... ....+|+++|++++.++++.+.
T Consensus 192 ~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 192 A-IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSF-----------------KLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSS-----------------CCSSCCEEECCCCHHHHHTTCC
T ss_pred H-HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccc-----------------cccCCeEEEEECChHHhccCCC
Confidence 1 22222223357899999999998762 22222222111 1225688899988887776544
Q ss_pred H
Q psy2159 188 W 188 (194)
Q Consensus 188 ~ 188 (194)
.
T Consensus 254 ~ 254 (360)
T 3t34_A 254 M 254 (360)
T ss_dssp H
T ss_pred H
Confidence 3
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.72 E-value=3.4e-16 Score=127.76 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=86.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC------------------CCc-------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR------------------TAQ-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~------------------~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
+|.|+|+.++|||||..+++... +.. ..-|+......+.+++..++++||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 79999999999999999996321 111 22255556678899999999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
|.......++-+|++|+|+|+...- ..+....|..... .++|.++++||+|....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9998899999999999999998853 3444555666555 58999999999998763
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=1.9e-17 Score=128.81 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=93.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC------CCC--cccc--CC-----------------Cccee------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND------RTA--QHMP--TL-----------------HPTSE------------ 58 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~------~~~--~~~~--t~-----------------~~~~~------------ 58 (194)
..+...|+++|++|+|||||++.+... +.. ...| +. .+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346678889999999999999998632 110 0000 00 00000
Q ss_pred ----------EEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2159 59 ----------ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128 (194)
Q Consensus 59 ----------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 128 (194)
.+...+..+.++||||... ........+|++++|+|....+....+. ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 0122567899999999543 2233457899999999987654442222 11134699999
Q ss_pred eeCCCCCCCCCHHH----HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 129 GNKIDIFDAASEDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 129 ~nK~D~~~~~~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+|+......+. +...+.... .....-..+++++||++|.|+++++++|.+.+
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~----------~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIY----------PREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHS----------TTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhcc----------ccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999864222222 222221110 00001124699999999999999999998754
No 191
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.72 E-value=5.5e-17 Score=115.22 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHH---HHHHhCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHhhh
Q psy2159 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DNLLADDA-LTDVPILILGNKI-DIFDAASEDEVRHFF 147 (194)
Q Consensus 73 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~piiiv~nK~-D~~~~~~~~e~~~~~ 147 (194)
+||...+.+|..|+.+.|++|||+|++|.+.++ .+..+ ..++.... ..+.|++|++||. |++.+.+..|+.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 378889999999999999999999999987655 55444 34444432 4789999999995 788899999999999
Q ss_pred cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 148 GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+... . .+.|.++.|||++|+|+.+.++||.+.+
T Consensus 189 ~L~~------------l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 189 HLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCcC------------C-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 8754 4 3789999999999999999999999876
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=4.1e-16 Score=120.71 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=62.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccch--
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR-- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~-- 79 (194)
++|+++|.||||||||+|++.+..+. .+++|.+++.+.+.+++ ..+.+||+||+.+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987742 34568888888787765 579999999988653
Q ss_pred --hh---HhhhhhcCCEEEEEEECCC
Q psy2159 80 --RV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 80 --~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
.+ +..+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335789999999999986
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=2.6e-18 Score=130.84 Aligned_cols=135 Identities=10% Similarity=0.037 Sum_probs=102.2
Q ss_pred HHHHHHHcCCCC--ccccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHH
Q psy2159 36 FLLQMLKNDRTA--QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYEL 111 (194)
Q Consensus 36 tli~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~ 111 (194)
+++.++..+.|. .+.||++.... ... .+..+.+||+ +++++.+++.+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777777774 57789986543 333 2237899999 8999999999999999999999999987 677777887
Q ss_pred HHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 112 DNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 112 ~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+.. .++|+++|+||+|+.+....++..+..+... .. +.+++|||++|.|++++|+++..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~--------------~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS--------------GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76643 4789999999999975322233444443321 12 67999999999999999998764
Q ss_pred h
Q psy2159 192 Y 192 (194)
Q Consensus 192 ~ 192 (194)
.
T Consensus 170 e 170 (301)
T 1u0l_A 170 K 170 (301)
T ss_dssp S
T ss_pred C
Confidence 3
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=3.7e-17 Score=124.44 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC-CCCcc---------ccCCCcceeEE--EeCC--EEEEEEEcCCC-------cc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND-RTAQH---------MPTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~-~~~~~---------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 77 (194)
.-.++|+++|++|||||||++++.+. .++.. .+|.......+ ..++ ..+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35578999999999999999998875 33321 12222221112 2222 68999999998 44
Q ss_pred chhhHh-------hhhhc-------------CCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 78 ARRVWR-------DYFPA-------------VDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 78 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..... .+++. +++++|+.+++. .+++.... .+..+ . .+.|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence 444433 33322 234555554432 23555442 22222 1 4579999999999865
Q ss_pred CCC----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 AAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 ~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
... .+++.+.++... +.++++||+++ |++++|+++.+.+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHN-----------------IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------------CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----------------CeEEecCCccc-cccHHHHHHHHHh
Confidence 211 123333333322 67999999999 9999999887754
No 195
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.65 E-value=1.7e-16 Score=118.42 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=70.8
Q ss_pred EEEEEEEcCCCccchhhH------hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
..+.+|||||+.+..... ...+.. +++++++|.....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999987654321 123456 8999999986544433332211111110011468999999999987632
Q ss_pred CHHHHHhhhcccCccC-CC-----ccC--------cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SEDEVRHFFGLYGLTT-GK-----EFT--------PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~-~~-----~~~--------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+.++...... .. ... ..... ....+++++||++|+|+++++++|.+.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 2223333221100000 00 000 00001 1224689999999999999999998764
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=6.2e-16 Score=126.36 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c--cccCCCcceeE------------------------------------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q--HMPTLHPTSEE------------------------------------ 59 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~--~~~t~~~~~~~------------------------------------ 59 (194)
...+|+++|.+|+|||||+|++.+.++. . ..|+.......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998763 1 11211110000
Q ss_pred --EEeCC---EEEEEEEcCCCcc-----------chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC
Q psy2159 60 --LSMGD---IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 60 --~~~~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (194)
+..++ ..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence 00010 2589999999875 345566678899999999999886556666666555422 468
Q ss_pred cEEEEeeCCCCCCC
Q psy2159 124 PILILGNKIDIFDA 137 (194)
Q Consensus 124 piiiv~nK~D~~~~ 137 (194)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999998763
No 197
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=2.7e-16 Score=114.38 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-------cccCC----------CcceeEE------------------EeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTL----------HPTSEEL------------------SMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 64 (194)
+..+++++|++|||||||++++....... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45688899999999999999998652110 00000 0000111 1133
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDE 142 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e 142 (194)
..+.+|||+|+..... .+....+.+++|+|+..... .... +... .+.|.++++||+|+.+. ...++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEK-HPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhh-hhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 5788999999521111 11125688999999877532 1111 1111 24689999999998642 45666
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+... ...++++++||++|.|+++++++|.+.+
T Consensus 177 ~~~~~~~~---------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 177 MKADAKLI---------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHH---------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHh---------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 66665431 1236899999999999999999998754
No 198
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.64 E-value=6.2e-15 Score=123.44 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhCC--cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCc------------------------
Q psy2159 5 WTKFREVLLRLGL--WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHP------------------------ 55 (194)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~------------------------ 55 (194)
...+++.+..++. .....+|+|+|.+++||||++|++.+..+.. -..|..+
T Consensus 33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~ 112 (772)
T 3zvr_A 33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 112 (772)
T ss_dssp HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBC
T ss_pred HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccC
Confidence 3345566666764 3577899999999999999999999977621 1111110
Q ss_pred -----------------------c----eeEEEeC-CEEEEEEEcCCCcc-------------chhhHhhhh-hcCCEEE
Q psy2159 56 -----------------------T----SEELSMG-DIVFTTHDLGGHVQ-------------ARRVWRDYF-PAVDAIV 93 (194)
Q Consensus 56 -----------------------~----~~~~~~~-~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~d~ii 93 (194)
. .-.+..+ ...+.++||||... .......++ ..+|+++
T Consensus 113 ~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL 192 (772)
T 3zvr_A 113 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 192 (772)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0 0011122 24588999999544 122333344 4689999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++....-......+..+ .. .+.|+++|+||+|+.+... ...+.. -+... ......+++
T Consensus 193 ~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV 255 (772)
T 3zvr_A 193 AVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVV 255 (772)
T ss_dssp EEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECC
T ss_pred EEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceE
Confidence 999998754333332333333 22 5789999999999876322 122221 11111 122346789
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|.|++++++++.+
T Consensus 256 ~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCEESSSSEEHHHHHHH
T ss_pred EecccccccchhHHHHHHH
Confidence 9999999999999999875
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=118.80 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=63.0
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--- 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--- 139 (194)
++..+.++||+|.... .......+|++++|+|++.......... .+ ...|.++++||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678899999996422 2334678999999999876432221111 11 2458899999999854211
Q ss_pred -HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 -EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 -~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++...+.... .. ......+++++||++|.|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~---------~~-a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLR---------KR-SQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------cc-ccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 112222221110 00 000124689999999999999999998753
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.64 E-value=4.3e-15 Score=115.60 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=60.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC---------------------CEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG---------------------DIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~---------------------~~~~~~~d~~g~~~ 77 (194)
++++++|.||||||||+|++.+.... ....|..++.+....+ +..+.+||+||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57899999999999999999986421 3445777877766543 35799999999876
Q ss_pred ch-------hhHhhhhhcCCEEEEEEECCC
Q psy2159 78 AR-------RVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 78 ~~-------~~~~~~~~~~d~ii~v~d~~~ 100 (194)
.. ..+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223445789999999999976
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=1.6e-16 Score=123.00 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED- 141 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~- 141 (194)
++..+.++||||....... ....+|++++|+|.+.......... .. .+.|.++|+||+|+.......
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4678999999997654332 3578999999999875432211111 11 145889999999986531222
Q ss_pred ---HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 142 ---EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 142 ---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++...+.... .....-..+++++||++|.|+++++++|.+.
T Consensus 215 ~~~~l~~~l~~~~----------~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 215 ARHMYESALHILR----------RKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHSC----------CSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----------ccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 2222221111 0000012478999999999999999999774
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=123.18 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcc---------ccCCCccee--EEEeCC--EEEEEEEcCCCccch-------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQH---------MPTLHPTSE--ELSMGD--IVFTTHDLGGHVQAR------- 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~---------~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~------- 79 (194)
-.++|+++|++|||||||++++++..++.. .+|.+.... .+...+ ..+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 346789999999999999999998766311 112111111 111123 478999999986531
Q ss_pred hh------------------HhhhhhcCCE--EEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 80 RV------------------WRDYFPAVDA--IVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 80 ~~------------------~~~~~~~~d~--ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
.+ ...++.++++ ++|+.+.+ ..++.... .++..+ . .+.|+|+|+||+|+....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 0123344444 44443332 13455554 445444 2 368999999999986521
Q ss_pred CH----HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. +++.+.+... .++++++||+++.+++++|..+.+.+
T Consensus 184 ev~~~k~~i~~~~~~~-----------------~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEH-----------------KIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHH-----------------TCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHc-----------------CCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 11 2222333222 26789999999999999988887654
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=8e-16 Score=131.25 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCC------------CC-------ccccCCCcceeEEEeC---
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR------------TA-------QHMPTLHPTSEELSMG--- 63 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~------------~~-------~~~~t~~~~~~~~~~~--- 63 (194)
.+++..+. ...+..+|+++|++++|||||++++.... +. ....|+......+.+.
T Consensus 7 ~~~~~~m~---~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~ 83 (842)
T 1n0u_A 7 DQMRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD 83 (842)
T ss_dssp HHHHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH
T ss_pred HHHHHHhh---CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc
Confidence 34444443 23455699999999999999999998641 11 1122444444444443
Q ss_pred -------------CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 64 -------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 64 -------------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
+..+++|||||+.++...+..+++.+|++++|+|+++..++.....| ..... .+.|+++++|
T Consensus 84 ~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviN 158 (842)
T 1n0u_A 84 EDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVIN 158 (842)
T ss_dssp HHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEE
T ss_pred cccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEE
Confidence 57899999999999999999999999999999999998777665443 33333 4789999999
Q ss_pred CCCCC
Q psy2159 131 KIDIF 135 (194)
Q Consensus 131 K~D~~ 135 (194)
|+|+.
T Consensus 159 K~D~~ 163 (842)
T 1n0u_A 159 KVDRA 163 (842)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 99986
No 204
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.63 E-value=9.8e-16 Score=113.87 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=86.9
Q ss_pred cCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHH---HHHhCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHhh
Q psy2159 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD---NLLADDA-LTDVPILILGNK-IDIFDAASEDEVRHF 146 (194)
Q Consensus 72 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piiiv~nK-~D~~~~~~~~e~~~~ 146 (194)
.+||...+..|..|+.+.|++|||+|++|.+.++ ....+. .++.... ..+.|++|.+|| .|++.+.+..|+.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578889999999999999999999999988765 443333 3343221 368999999996 699889999999999
Q ss_pred hcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 147 FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++... . .+.|.++.|||.+|+|+.|.++||.+.+
T Consensus 273 L~L~~------------l-~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 273 LHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp TTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred cCCcc------------C-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 98754 4 3689999999999999999999999876
No 205
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.62 E-value=9.9e-16 Score=127.29 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=113.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC--CC------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR--TA------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
||.++|+.++|||||..+++... .. . ..-|+......+.+++..++++|||||.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 78999999999999999986321 11 0 111444445567778899999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~ 158 (194)
....++-+|++++|+|+...- ..+....|..... .++|.++++||+|...... .+++.+.+...........
T Consensus 84 v~raL~~~DgavlVVDa~~GV-~~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGV-QAQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTT-CSHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 899999999999999998743 3344555555554 4789999999999876332 2334443322110000000
Q ss_pred --------Cc------------------------------------ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 --------TP------------------------------------REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 --------~~------------------------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. .........+++..||+++.||+.+++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 00 000112235788899999999999999998765
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.62 E-value=9e-15 Score=113.83 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=81.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~i 92 (194)
+|+++|.|+||||||+|++++.+.. .++.|..+..+.+.+++..+.++|+||..+.. ......++.+|++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~i 153 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLL 153 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcc
Confidence 7999999999999999999987643 57779999999999999999999999965321 1233456789999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCC
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDI 134 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~ 134 (194)
++|+|.+++. ........++... .....+|.++++||.|.
T Consensus 154 l~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 154 FIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999998742 2222222222221 12245788889999985
No 207
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=1.4e-13 Score=115.71 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=79.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC--------CC---cc----------ccCCCcceeEEEe-------CCEEEEEEEcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR--------TA---QH----------MPTLHPTSEELSM-------GDIVFTTHDLGG 74 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~--------~~---~~----------~~t~~~~~~~~~~-------~~~~~~~~d~~g 74 (194)
+|.|+|+.++|||||..+|.... .. .+ .-|+......+.+ +++.++++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 78999999999999999987321 10 01 1123333334444 258999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|.+|.......++-+|++++|+|+...- -.+....|..... .++|.++++||+|...
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 9999998899999999999999998753 3444555666655 4799999999999865
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.54 E-value=1.3e-14 Score=105.82 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--------------eEEEeC-C------------------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--------------EELSMG-D------------------ 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--------------~~~~~~-~------------------ 64 (194)
.+..+|+++|.+|||||||++++....+.. ..++++.+. ..+..+ +
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356789999999999999999999764331 222222111 111111 0
Q ss_pred ---EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CC
Q psy2159 65 ---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--AS 139 (194)
Q Consensus 65 ---~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~ 139 (194)
..+.+.|++|.-.... .+-...+..+.++|.......... .... ...|.++++||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 1344444444211110 011123445566664322111110 0111 13678999999998652 45
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++.+.+.... ...+++++||++|.|++++|+++.+.+
T Consensus 184 ~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 184 IKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 566666554321 236799999999999999999998754
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=7.9e-14 Score=107.63 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=91.3
Q ss_pred HHHHHhCCcCCC-CeEEEEcCCCCChHHHHHHHHc------CCCC----ccccCC------------C-----cceeE--
Q psy2159 10 EVLLRLGLWKKS-GKLLFLGLDNAGKTFLLQMLKN------DRTA----QHMPTL------------H-----PTSEE-- 59 (194)
Q Consensus 10 ~~~~~~~~~~~~-~~i~v~G~~~~GKStli~~~~~------~~~~----~~~~t~------------~-----~~~~~-- 59 (194)
..+..++..... ..+.++|++|||||||++.+.+ .+.. ....+. + +....
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 122 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP 122 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc
Confidence 466777765544 4566889999999999999983 2221 010000 0 00000
Q ss_pred --------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC
Q psy2159 60 --------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119 (194)
Q Consensus 60 --------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 119 (194)
+...+..+.++||||...... .....+|.+++++|..............
T Consensus 123 ~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i-------- 191 (337)
T 2qm8_A 123 SPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI-------- 191 (337)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH--------
T ss_pred CcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH--------
Confidence 123578899999999764322 2346899999999976432211111111
Q ss_pred CCCCcEEEEeeCCCCCCCCC-----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 120 LTDVPILILGNKIDIFDAAS-----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 120 ~~~~piiiv~nK~D~~~~~~-----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...|.++++||+|+.+... .+++...+.... .....-..+++.+||+++.|++++++.|.+.
T Consensus 192 -~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~----------~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 192 -FELADMIAVNKADDGDGERRASAAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp -HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -hccccEEEEEchhccCchhHHHHHHHHHHHHHHhcc----------ccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1235688889999754211 112222111110 0000002467889999999999999998764
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=1.9e-11 Score=95.74 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=67.1
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCC----CccccCCCcceeEEEeCC-----------------EEEEEEEcC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT----AQHMPTLHPTSEELSMGD-----------------IVFTTHDLG 73 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~----~~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~ 73 (194)
++...+..+++++|++|||||||+|++++... ..++.|..++.+.+..++ ..+.+||+|
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 44445678999999999999999999999654 235558888988888875 468999999
Q ss_pred CCcc-------chhhHhhhhhcCCEEEEEEECCC
Q psy2159 74 GHVQ-------ARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 74 g~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
|... ....+...++.+|++++|+|+.+
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9543 22344556788999999999864
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=102.71 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=58.1
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGG 74 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g 74 (194)
++......+++++|.+|+|||||+|++.+..+. .++.|.+++.+.+..++ ..+.+||+||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 445567789999999999999999999987652 35667888888877654 2599999999
Q ss_pred Cccchh-------hHhhhhhcCCEEEEEEECCCCCC
Q psy2159 75 HVQARR-------VWRDYFPAVDAIVFIIDASDRSR 103 (194)
Q Consensus 75 ~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~~ 103 (194)
+.+... .+..+++.+|++++|+|+++..+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 886443 45667899999999999976443
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.36 E-value=1.1e-12 Score=99.77 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhccc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLY 150 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~ 150 (194)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++.+.++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 6667777778899999999999999886 78877777775543 5799999999999975321 23333434332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
. .+++++||++|.|++++++.+...
T Consensus 142 g-----------------~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 142 G-----------------YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp T-----------------CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred C-----------------CeEEEEECCCCCCHHHHHhhccCc
Confidence 2 679999999999999999987643
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.05 E-value=3.4e-09 Score=85.50 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHH------cCCCCcccc-CC---------------CcceeE-----------------EE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLK------NDRTAQHMP-TL---------------HPTSEE-----------------LS 61 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~------~~~~~~~~~-t~---------------~~~~~~-----------------~~ 61 (194)
...|+++|++||||||+++.|. +.+..-... +. +..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4467788999999999999998 443210000 00 011000 01
Q ss_pred eCCEEEEEEEcCCCccchh-hH---hhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCC
Q psy2159 62 MGDIVFTTHDLGGHVQARR-VW---RDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDI 134 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 134 (194)
..+..+.++||||...... .+ ... +..+|.+++|+|+..... .......+.. ..|+ .+|+||.|.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~-----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD-----KVDVASVIVTKLDG 252 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH-----HHCCCCEEEECTTS
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh-----hcCceEEEEeCCcc
Confidence 1567899999999764221 11 111 226899999999987532 2222222221 2575 899999998
Q ss_pred CCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 135 FDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
...... -.+...++..-.-...++.. . .-....+.+.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~~l~~~~~~g~PI~fig~ge~~-~-dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGGALSAVAATKSPIIFIGTGEHI-D-DFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTHHHHHHHHHCCCEEEEECSSST-T-CEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHHHHHHHHHhCCCeEEeccccch-h-hhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 653221 12222222100000000000 0 001122345689999999 99999998754
No 214
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.04 E-value=1.5e-09 Score=85.52 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-CC-Ccc----eeEEEeCC-EEEEEEEcCCCccch----hhHhh-hhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-TL-HPT----SEELSMGD-IVFTTHDLGGHVQAR----RVWRD-YFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-t~-~~~----~~~~~~~~-~~~~~~d~~g~~~~~----~~~~~-~~~ 87 (194)
....++++|++|||||||+|.+.+...+.... +. +.. ........ ..+.++|++|..... ..... .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 44578899999999999999999853321110 00 100 11112121 257899999864221 11111 123
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHhhhcccCccCCCcc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF---------DAASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~---------~~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
..+..++ ++... +...+..+...+.. .++|+++|.||.|+. +....+++.+.+.......
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~---- 216 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT---- 216 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH----
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH----
Confidence 3455554 66653 22333333333333 368999999999963 2234445544443321000
Q ss_pred CcccccCCcceEEEEecc--ccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSV--LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa--~~~~~v~~l~~~l~~~i 193 (194)
....+.....++.+|+ .++.|++++.+.+.+.+
T Consensus 217 --l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 217 --FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp --HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred --HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 0001112235788999 66677999999998765
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.99 E-value=7.4e-10 Score=83.34 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=67.2
Q ss_pred EEEcCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh
Q psy2159 69 THDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 147 (194)
Q Consensus 69 ~~d~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~ 147 (194)
+-..||+. ...+.....+..+|+++.|+|+.++.+.... .+..++ .++|.++|+||+|+.+....+.+.+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578876 4555666678899999999999998776531 233332 478999999999997632222333444
Q ss_pred cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 148 GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+... .+++.+||+++.|++++++.+.+.
T Consensus 76 ~~~g-----------------~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 ENQG-----------------IRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HTTT-----------------CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HhcC-----------------CcEEEEECCCcccHHHHHHHHHHH
Confidence 3222 578999999999999999987664
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=7.3e-11 Score=92.11 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-----CCCccccCCCcceeE--EEeCCEEEEEEEcCCCccchh--------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-----RTAQHMPTLHPTSEE--LSMGDIVFTTHDLGGHVQARR--------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-----~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~--------~~~~ 84 (194)
...+++++|.+|+|||||+|++.+. ......+..+.+... +..+ ..+.++||||...... ....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3468999999999999999999986 333333333333322 2333 2479999999653221 1222
Q ss_pred hh--hcCCEEEEEEECCCC---CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 85 YF--PAVDAIVFIIDASDR---SRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 85 ~~--~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
++ +..+.++++++.... ..+.. +..-...+.|+++++||+|...
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTTSCEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCceEEEEecCCcccc
Confidence 22 568999999988431 11111 1111124689999999999866
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.92 E-value=1.6e-09 Score=84.57 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=69.0
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGL 152 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~ 152 (194)
..+++.+.+..+.+.++++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+ ....+++.+++....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~- 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA- 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH-
Confidence 45678888888888999999999998732 2332233222 14789999999999966 334455555532211
Q ss_pred cCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+.+...++.+||++|.|++++++.+.+
T Consensus 127 ---------~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 127 ---------KQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp ---------HHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ---------HHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 001222237899999999999999999865
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.88 E-value=3.2e-10 Score=88.43 Aligned_cols=124 Identities=8% Similarity=0.093 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC------CCccccCCCccee--EEEeCCEEEEEEEcCCCccchh--------hHh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR------TAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQARR--------VWR 83 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~------~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~--------~~~ 83 (194)
+..+++++|.+|+|||||+|++.+.. .....+..+.+.. .+..+. .+.++||||...... ...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34689999999999999999999852 2223333333322 223222 388999999653221 111
Q ss_pred hh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 84 DY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 84 ~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
.+ .+..+.++++++.....-...+. + .+.+. ..+.|+++++||+|.......+...+.+++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~-~-~d~l~---~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~ 300 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA-R-FDYVS---GGRRAFTCHFSNRLTIHRTKLEKADELYKN 300 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE-E-EEEEE---SSSEEEEEEECTTSCEEEEEHHHHHHHHHH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE-E-EEEec---CCCceEEEEecCccccccccHHHHHHHHHH
Confidence 11 25678899999874311011100 0 01111 246899999999998764445554444433
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.87 E-value=3e-09 Score=83.00 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=69.5
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGL 152 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~ 152 (194)
.++++++....+++.++++++|+|++++.+ .....+..++ .++|+++|+||+|+.+. ...+++.+++....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~- 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA- 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence 477888888888899999999999998652 1111122221 47899999999999763 34455555543211
Q ss_pred cCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.+...++.+||++|.|++++++.+.+.
T Consensus 129 ---------~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 ---------EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp ---------HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ---------HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 0022222478999999999999999998653
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=4.3e-09 Score=83.09 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred HHHhCCcCCCCe---EEEEcCCCCChHHHHHHHHcCCCCc-ccc--CCCcce---eEE-EeCC--EEEEEEEcCCCccc-
Q psy2159 12 LLRLGLWKKSGK---LLFLGLDNAGKTFLLQMLKNDRTAQ-HMP--TLHPTS---EEL-SMGD--IVFTTHDLGGHVQA- 78 (194)
Q Consensus 12 ~~~~~~~~~~~~---i~v~G~~~~GKStli~~~~~~~~~~-~~~--t~~~~~---~~~-~~~~--~~~~~~d~~g~~~~- 78 (194)
++.+++..+... ++++|++|||||||+|.+++..+.. ... +.+... ..+ ...+ ..++++|++|....
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 444444444433 7899999999999999999875431 111 111111 111 1122 37899999986432
Q ss_pred -------------hhhHhh----h---------hhc--CCE-EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy2159 79 -------------RRVWRD----Y---------FPA--VDA-IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILG 129 (194)
Q Consensus 79 -------------~~~~~~----~---------~~~--~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 129 (194)
...+.. + ..+ +|+ +.++.|..+. .......+...+. .+.|+|+|.
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi 183 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPII 183 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEE
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEE
Confidence 111111 1 011 233 4455565543 3333322333322 578999999
Q ss_pred eCCCCCC
Q psy2159 130 NKIDIFD 136 (194)
Q Consensus 130 nK~D~~~ 136 (194)
||+|...
T Consensus 184 ~KtD~Lt 190 (427)
T 2qag_B 184 AKADAIS 190 (427)
T ss_dssp SCGGGSC
T ss_pred cchhccc
Confidence 9999865
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.83 E-value=5.7e-09 Score=78.00 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=60.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccc----------cCCCc-ceeEE-EeCC--EEEEEEEcCCCccch--------
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHM----------PTLHP-TSEEL-SMGD--IVFTTHDLGGHVQAR-------- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~----------~t~~~-~~~~~-~~~~--~~~~~~d~~g~~~~~-------- 79 (194)
++++++|++|||||||+|.+++...+... .+... ....+ ...+ ..++++|++|.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68899999999999999999985433111 01100 11111 1112 368999999853210
Q ss_pred --hh----Hhh--------------hhhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 80 --RV----WRD--------------YFPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 80 --~~----~~~--------------~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.. +.. .+..+++.++++|.... .+.... ..+..+ .. . .++++++||.|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L-~~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHL-SK---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHH-HT---T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHH-Hh---c-CcEEEEEeccccCC
Confidence 00 000 11235788888886532 233333 333333 32 2 89999999999865
No 222
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=5.9e-09 Score=77.59 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=61.7
Q ss_pred cCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 72 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 72 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
.|||. ...+.....+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+++.+.++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 46765 33445566788999999999999877654321 11 1 1 78999999999997632223334444322
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+ .++ .+||+++.|++++++.+.+.
T Consensus 75 g-----------------~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 G-----------------KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp T-----------------CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred C-----------------CeE-EEECCCCcCHHHHHHHHHHh
Confidence 2 446 89999999999999987654
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.65 E-value=3.9e-08 Score=73.93 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~ 77 (194)
....++++++|.||+|||||+|++.+.....+.++.+.+. ..+..+ ..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcCC
Confidence 4567899999999999999999999887554444333332 123333 3689999999753
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=8.7e-09 Score=76.69 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~ 77 (194)
.+++++|.+|+|||||+|++.+.....+.++.+.+.. .+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998877655555444322 2233 34789999999764
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.58 E-value=5.5e-08 Score=77.28 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=83.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC------CCC----c-c-------------------c----cCCCcc-e--eEE-Ee
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND------RTA----Q-H-------------------M----PTLHPT-S--EEL-SM 62 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~------~~~----~-~-------------------~----~t~~~~-~--~~~-~~ 62 (194)
+..|+++|++|+||||+++.+... +.. . . . .+.++. . ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 346889999999999999988863 110 0 0 0 111110 0 000 01
Q ss_pred CCEEEEEEEcCCCccchhh-Hh---h--hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC-c-EEEEeeCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRV-WR---D--YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV-P-ILILGNKIDI 134 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~-~~---~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iiiv~nK~D~ 134 (194)
.+..+.++||||....... .. . .+..+|.+++|+|+.... ........+ . ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 4568899999997643221 11 1 122589999999986632 222223222 1 234 5 7899999997
Q ss_pred CCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 135 FDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
..... ...+....+..-.-...+... ..-..+.+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~--~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGI--DDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSS--SSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccc--cccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 54211 111222221100000000000 0011223345678888888 88877776554
No 226
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.51 E-value=4.3e-08 Score=74.39 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~ 156 (194)
+.+..+.++|.+++|+|+.++..-......+...... .++|.++|+||+|+.++.. .+++.+.++..+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g----- 150 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG----- 150 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-----
Confidence 3445688999999999999776444433333322233 5789999999999977532 234444443323
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHH
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
.+++.+||.++.|++++++..
T Consensus 151 ------------~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 151 ------------YDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp ------------CCEEECCHHHHTTCTTTGGGG
T ss_pred ------------CeEEEEecCCCCCHHHHHhhc
Confidence 578999999999998877654
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.48 E-value=2.2e-06 Score=68.03 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=40.3
Q ss_pred CEEEEEEEcCCCccchh-h---Hh--hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR-V---WR--DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~-~---~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... . .. .....+|.+++|+|+.... ........+... -.+..+|+||.|...
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 46789999999543221 1 11 1123579999999987632 233333444322 235679999999754
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.47 E-value=3.7e-07 Score=75.66 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
..++++|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 358899999999999999999874
No 229
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.40 E-value=4.8e-07 Score=74.34 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=42.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccC-CCcceeEEE-------eCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPT-LHPTSEELS-------MGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t-~~~~~~~~~-------~~~~~~~~~d~~g~~~ 77 (194)
..+...|+|+|.||+|||||+|++++.... .+..| .+.+.+... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456788899999999999999999987642 22222 233333322 2457899999999754
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.22 E-value=7e-06 Score=65.09 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=38.9
Q ss_pred CEEEEEEEcCCCcc--chh----hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 64 DIVFTTHDLGGHVQ--ARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 64 ~~~~~~~d~~g~~~--~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.++||||... ... ..... ....+.+++|+|+...... ......+... -.+..+++||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH----CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc----cCCcEEEEeccccc
Confidence 46788999999533 111 11111 2246899999999764322 2233333221 23578999999975
Q ss_pred C
Q psy2159 136 D 136 (194)
Q Consensus 136 ~ 136 (194)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 4
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.13 E-value=4.4e-05 Score=57.66 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=41.5
Q ss_pred CCEEEEEEEcCCCcc--chh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCC
Q psy2159 63 GDIVFTTHDLGGHVQ--ARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKID 133 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D 133 (194)
.+..+.++||||... ... ... .....+|.+++|+|.... .+.......+.. ..| ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456799999999776 322 211 124468999999998642 233333333322 345 678999999
Q ss_pred CCC
Q psy2159 134 IFD 136 (194)
Q Consensus 134 ~~~ 136 (194)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 754
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.05 E-value=6.9e-06 Score=63.55 Aligned_cols=84 Identities=20% Similarity=0.131 Sum_probs=53.4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCcc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
...++|.+++|... .|..-......+...... .++|.+||+||+|+.++.. .+++...+...+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G---------- 192 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIG---------- 192 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTT----------
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCC----------
Confidence 36789999987664 455333332222222122 4678899999999976422 122333333323
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHH
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
.+++.+||+++.|++++...+
T Consensus 193 -------~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 193 -------YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp -------CCEEECBTTTTBTHHHHHHHH
T ss_pred -------CcEEEEecCCCcCHHHHHHhc
Confidence 568999999999999988764
No 233
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=2e-06 Score=69.12 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEE--E-eCC-EEEEEEEcCCCcc--chhhH--------hh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL--S-MGD-IVFTTHDLGGHVQ--ARRVW--------RD 84 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~--~-~~~-~~~~~~d~~g~~~--~~~~~--------~~ 84 (194)
..+..|+++|.+||||||+.++|...-.....+|.......+ . .++ ....+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999988642111111111110000 0 011 2346788888732 23322 44
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHH
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELD 112 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~ 112 (194)
++...++.++|+|.++.. ...-..|..
T Consensus 117 ~l~~~~G~~vV~D~tn~~-~~~R~~~~~ 143 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTT-RERRAMIFN 143 (469)
T ss_dssp HHHTTCCSEEEEESCCCS-HHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCC-HHHHHHHHH
Confidence 555678889999998863 444334433
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.75 E-value=3.4e-05 Score=56.31 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=32.3
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
+.+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~ 68 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIK 68 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEE
Confidence 34444444544 558899999999999999986 33456677776643
No 235
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.70 E-value=4.4e-05 Score=55.29 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLL--------DAPTEGKVFLEGKE 67 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEE
Confidence 3444444444 458899999999999999986 33455677776643
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.68 E-value=5.4e-05 Score=55.42 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=29.8
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++-.++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 17 ~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~ 60 (240)
T 2onk_A 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIV--------KPDRGEVRLNGA 60 (240)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEETTE
T ss_pred eeEEEECCEEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEECCE
Confidence 34444444345588999999999999999872 234455555553
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.67 E-value=5e-05 Score=56.73 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--------~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--------LKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeEEEECCEE
Confidence 34444444444 558899999999999999986 23455666666644
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.66 E-value=2.6e-05 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998865
No 239
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.65 E-value=5.8e-05 Score=56.00 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~ 69 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQN 69 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEE
Confidence 34455555554 458899999999999999986 33455666666643
No 240
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.63 E-value=6.3e-05 Score=55.61 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 12 LLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 12 ~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
++.+++..++.. ++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~--------~p~~G~i~~~g~ 69 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL--------KADEGRVYFENK 69 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEECCE
Confidence 334555555554 4588999999999999999862 344566666553
No 241
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.61 E-value=7.2e-05 Score=54.73 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~ 68 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--------RAQKGKIIFNGQ 68 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEECCE
Confidence 344444444 45588999999999999999862 234455555553
No 242
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.60 E-value=9.8e-05 Score=57.13 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=30.9
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++..+ +++|++|||||||++.+.+-. .++.+.+.++|..
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE--------QPDSGEISLSGKT 67 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS--------CCSEEEEEETTEE
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC--------CCCCcEEEECCEE
Confidence 44455555554 578999999999999999873 3344555555543
No 243
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.60 E-value=9.3e-05 Score=53.19 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=28.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.++++|+.|||||||++.+.+- ..++.+.+.+++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVP 72 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEE
Confidence 4568899999999999999986 33456777777643
No 244
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.59 E-value=7e-05 Score=55.57 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=31.0
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|.
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~ 86 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--------EDFDEGEIIIDGI 86 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTE
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--------CCCCCcEEEECCE
Confidence 34444444554 558899999999999999986 2344566666654
No 245
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.59 E-value=0.00024 Score=56.46 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred CCEEEEEEEcCCCccchh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 135 (194)
.++.+.++||||...... ... .....++.+++|+|+.... ........+.. ..+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc-----cCCCeEEEEecCCCC
Confidence 457899999999654322 111 1234689999999987542 22222233311 234 34799999975
Q ss_pred C
Q psy2159 136 D 136 (194)
Q Consensus 136 ~ 136 (194)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 4
No 246
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.58 E-value=5.3e-05 Score=56.32 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=23.7
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++.. ++++|+.|||||||++.+.+-
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3444444444 558899999999999999986
No 247
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.56 E-value=0.00011 Score=54.05 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=29.3
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~i~g~ 71 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY--------IPENGQVLIDGH 71 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEECCE
Confidence 34444344 45588999999999999999872 234455555553
No 248
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.55 E-value=8.4e-05 Score=55.40 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=24.2
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++..++. .++++|+.|||||||++.+.+-
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444444444 4558899999999999999987
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=4.1e-05 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35678899999999999999864
No 250
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.54 E-value=0.00012 Score=54.13 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=23.7
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344444454 4558899999999999999986
No 251
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.54 E-value=6.8e-05 Score=56.76 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHc
Q psy2159 9 REVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~ 43 (194)
..++..+++..++.+ ++++|++|||||||++.+.+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 456777777766654 55889999999999999885
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.53 E-value=3.5e-05 Score=55.50 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=20.6
Q ss_pred HHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 10 EVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 10 ~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
+.+..+++..+..+ ++++|++|||||||++.+.+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35566666665554 5588999999999999998753
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.53 E-value=8e-05 Score=55.57 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.0
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..+++..+.. +++.|++|+|||||++.+.+.
T Consensus 34 ~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3667777666655 899999999999999999874
No 254
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.52 E-value=0.00011 Score=54.62 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=30.2
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
+.+++..++.. ++++|+.|||||||++.+.+-. .++.+.+.+++.
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--------~p~~G~I~~~g~ 69 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--------EPTSGDVLYDGE 69 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcEEEECCE
Confidence 33444444554 5588999999999999999862 234455555553
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.52 E-value=8.7e-05 Score=54.19 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344444444 4558899999999999999986
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.52 E-value=0.00013 Score=52.08 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHhCC-cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGL-WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+..++.. ..+...++++|++|||||||++.+.+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444432 244556778899999999999998864
No 257
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.52 E-value=0.001 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=50.3
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+.+.++|+|+.. .......+..+|.+++++..+... ......+..+.... ..++.++.+|+|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 3678999999876 334455567799999999876643 55555444443321 1345678999999995432 2234
Q ss_pred HHhhhc
Q psy2159 143 VRHFFG 148 (194)
Q Consensus 143 ~~~~~~ 148 (194)
+.+.++
T Consensus 150 ~~~~l~ 155 (206)
T 4dzz_A 150 LKESIK 155 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.51 E-value=0.00011 Score=53.33 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=22.8
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++. .++++|+.|||||||++.+.+.
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33333344 4558899999999999999986
No 259
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.51 E-value=0.00016 Score=56.25 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=31.0
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
.+++..+... ++++|++|||||||++.+.+-. .++.+.+.+++..+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE--------EPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS--------CCSEEEEEETTEEE
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC--------CCCccEEEECCEEC
Confidence 3444444444 4588999999999999999873 24455565555443
No 260
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.51 E-value=0.00012 Score=56.70 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=30.2
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++..+ .++|++|||||||++.+.+-. .++.+.+.++|.
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~--------~p~~G~I~i~G~ 90 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--------RPTEGSVLVDGQ 90 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEETTE
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC--------CCCceEEEECCE
Confidence 44455555554 588999999999999999873 234455555553
No 261
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.51 E-value=5e-05 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++||+|||||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999863
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.50 E-value=7.4e-05 Score=54.76 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=24.3
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++.. ++++|+.|||||||++.+.+-
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444445554 558899999999999999986
No 263
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.50 E-value=0.00012 Score=54.88 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344444444 4568899999999999999986
No 264
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.49 E-value=0.00017 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..-|.|+|++++|||||+|++++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 44555668899999999999999863
No 265
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.48 E-value=0.00014 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=24.4
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCC
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~ 45 (194)
.+++..++..+ +++|++|||||||++.+.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34445555544 578999999999999999873
No 266
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.48 E-value=0.00014 Score=53.45 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344444444 4558899999999999999986
No 267
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.47 E-value=0.00015 Score=56.22 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34444544544 4588999999999999999873
No 268
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.47 E-value=0.00015 Score=56.07 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444444444 4588999999999999999873
No 269
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.46 E-value=7.7e-05 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35678899999999999999875
No 270
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.46 E-value=0.00011 Score=50.97 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+.+...+... +.-.+++.|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~~-~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCGG-GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455544422 2445678899999999999998764
No 271
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.46 E-value=6.1e-05 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4678899999999999999875
No 272
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.00016 Score=56.14 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..+... ++++|++|||||||++.+.+-.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34444555554 4588999999999999999873
No 273
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.45 E-value=6.3e-05 Score=52.70 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++++|++||||||+++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 678899999999999999864
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.45 E-value=0.00012 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~ 45 (194)
.+..+++..++..+ +++|+.|||||||++.+.+.-
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566666666655 577999999999999999863
No 275
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.42 E-value=0.00018 Score=56.00 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=24.7
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..+... ++++|++|||||||++.+.+-.
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34444555554 4588999999999999999874
No 276
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.41 E-value=7.6e-05 Score=53.20 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4558899999999999999875
No 277
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.39 E-value=0.00013 Score=55.32 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.5
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 344444333 5668899999999999999986
No 278
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.38 E-value=0.00025 Score=52.54 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=23.3
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
+++..+.-.++++|+.|||||||++.+.+..
T Consensus 24 vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333342356688999999999999999873
No 279
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.38 E-value=0.00014 Score=56.30 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..+... ++++|++|||||||++.+.+-. .++.+.+.+++..
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i~g~~ 68 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD--------VPSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS--------CCSEEEEEETTEE
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCEE
Confidence 34455555554 4588999999999999999873 2344555555543
No 280
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.37 E-value=0.00014 Score=56.14 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33444444544 4588999999999999999873
No 281
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.37 E-value=9.1e-05 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-++++||+|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 55678999999999999998753
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.36 E-value=8.4e-05 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCCCeE-EEEcCCCCChHHHHHHHH
Q psy2159 19 KKSGKL-LFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 19 ~~~~~i-~v~G~~~~GKStli~~~~ 42 (194)
.++..+ +++|++|||||||++.+.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc
Confidence 344444 477999999999999754
No 283
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.34 E-value=0.00014 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHH
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~ 42 (194)
+...++++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999999
No 284
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.34 E-value=0.00014 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
+..-++++||+||||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34456788999999999999998753
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.34 E-value=0.00017 Score=53.39 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..++ ..+.-.++++|++||||||+++.+.+.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 455555 344456778899999999999998874
No 286
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.34 E-value=0.00019 Score=52.65 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..++...+.. +++.|++|+||||+++.+.+.
T Consensus 40 ~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 455555544444 889999999999999999875
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.33 E-value=0.00014 Score=51.43 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
...++++|++||||||+++.+.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3467788999999999999998764
No 288
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.00013 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++...+. .|+++|++||||||+.+.+...
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555554444 6778899999999999998753
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00011 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999874
No 290
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.31 E-value=6.7e-05 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHH-cC
Q psy2159 9 REVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLK-ND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~-~~ 44 (194)
++.+...++..++.+ ++++|++||||||+++.+. +.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 445666666665554 5577999999999999999 64
No 291
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.30 E-value=0.00012 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-++++||+|||||||++.|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 335667899999999999999864
No 292
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.28 E-value=0.00015 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...++++|++||||||+++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3346778999999999999998874
No 293
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.27 E-value=0.00025 Score=53.35 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=23.4
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 334444444 4558899999999999999986
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.27 E-value=0.00015 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-|+++|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346778899999999999999764
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.26 E-value=0.00014 Score=50.81 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 356889999999999999985
No 296
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.26 E-value=0.00018 Score=50.93 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...++++|++||||||+++.+.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3446778899999999999999764
No 297
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.26 E-value=0.0003 Score=52.07 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.0
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++. .++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3444444444 4558899999999999999986
No 298
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.26 E-value=0.00018 Score=52.60 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=20.3
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHc
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~ 43 (194)
.+..+++..++. -++++|+.||||||+++.+.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 566666666555 466889999999999999876
No 299
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.25 E-value=0.00015 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999754
No 300
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.25 E-value=0.00017 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 778899999999999999754
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.0002 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|+++|++||||||+++.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456888999999999999998764
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.23 E-value=0.00018 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467889999999999999987
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.22 E-value=0.0003 Score=52.42 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..+.. ++++|++|+|||||++.+.+.
T Consensus 64 ~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 455555544444 889999999999999999875
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.22 E-value=0.00021 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.00021 Score=48.96 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQML 41 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~ 41 (194)
-|++.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778899999999999999
No 306
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.21 E-value=0.00025 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++........+..|+++|++||||||+.+.+...
T Consensus 22 ~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 22 LTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333345567778899999999999998763
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.20 E-value=0.00039 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.-|++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344566779999999999999975
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.20 E-value=0.00022 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998763
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.20 E-value=0.00058 Score=54.05 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=37.9
Q ss_pred CCEEEEEEEcCCCccchh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.++.+.++||||...... ... ...-.+|.+++|+|.... .........+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 346789999999653321 111 112358999999998642 2333333333221 112467889999643
No 310
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.20 E-value=0.0028 Score=47.78 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=43.1
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDI 134 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~ 134 (194)
+.+.++|+|+...... ....+..+|.+++|+..+. .+.......+..+.......+.+++ +|+|+.+.
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTANDF-DSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSSH-HHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCcH-HHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 6788999987544322 2334677999999987543 2345555555555443333556665 89999984
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.20 E-value=0.00022 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
No 312
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.20 E-value=0.0035 Score=44.59 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=48.6
Q ss_pred CEEEEEEEcCCC-ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 64 DIVFTTHDLGGH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 64 ~~~~~~~d~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+.+.++|+|+. ... .....+..+|.+++++..+. .+.......+..+.... +.++.+++|+.|........+
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTSCHHHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccchHHHH
Confidence 367899999987 432 23445677999999987644 23444444444443321 567889999999654112345
Q ss_pred HHhhhc
Q psy2159 143 VRHFFG 148 (194)
Q Consensus 143 ~~~~~~ 148 (194)
+.+.++
T Consensus 141 ~~~~l~ 146 (209)
T 3cwq_A 141 ARQLLT 146 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 313
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.19 E-value=7.1e-05 Score=51.86 Aligned_cols=51 Identities=16% Similarity=-0.008 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
.+.++|++|||||||++.+.+... + .+...+.+..++..+.-+|.++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~----~-~g~~~G~I~~dg~~i~~~~~~~~d~~ 54 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR----E-RGLRVAVVKRHAHGDFEIDKEGKDSW 54 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH----H-TTCCEEEEEC------------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh----h-cCCceEEEEEcCcccccCCccchhHH
Confidence 577999999999999999987511 1 12225677777766544554444433
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.19 E-value=0.00022 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.|+++|+|||||+|....+...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999865
No 315
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00024 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|+++|++||||||+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 447889999999999999999753
No 316
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.17 E-value=0.00018 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
.-.++++|++|||||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34678999999999999999998644
No 317
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.17 E-value=0.00024 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..|+++|++||||||+.+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999763
No 318
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.17 E-value=0.00025 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++++|++||||||+++.+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35678899999999999998753
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.0003 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999865
No 320
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.16 E-value=0.00027 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+++.|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999975
No 321
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00025 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|+++|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999999987
No 322
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.15 E-value=0.00045 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.+++.||||+||||++.++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35888899999999998888763
No 323
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.14 E-value=0.00029 Score=58.08 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=26.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+-
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566666665555 5568899999999999999986
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.14 E-value=0.00027 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-|+++|++||||||+++.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445668899999999999988764
No 325
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.14 E-value=0.00028 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577889999999999999875
No 326
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.13 E-value=0.00019 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++|+.|||||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999876
No 327
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.00029 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35778899999999999999863
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.13 E-value=0.00029 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688889999999999999875
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.12 E-value=0.00038 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...+..|++.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556788999999999999999875
No 330
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.12 E-value=0.00026 Score=52.04 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=23.3
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444 4558899999999999999985
No 331
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00027 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999974
No 332
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.11 E-value=0.00025 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++|++||||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998864
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.10 E-value=0.00034 Score=50.49 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999975
No 334
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.09 E-value=0.00028 Score=52.39 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444 4558899999999999999985
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.09 E-value=0.00031 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999999999863
No 336
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.08 E-value=0.00032 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+++|++||||||+.+.+.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5789999999999999999873
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.07 E-value=0.00036 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 338
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00029 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477889999999999999876
No 339
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.00043 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999875
No 340
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.06 E-value=0.00035 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999998753
No 341
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.06 E-value=0.00043 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
No 342
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.06 E-value=0.0011 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||+++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999988764
No 343
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.0003 Score=51.86 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=23.7
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.+++..++. .++++|+.|||||||++.+.+-.
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444444 45588999999999999999863
No 344
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.04 E-value=0.00034 Score=50.92 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHH
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~ 42 (194)
.--++++|++|||||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3345678999999999999887
No 345
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.03 E-value=0.00037 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45678889999999999999976
No 346
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.03 E-value=0.00043 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+++.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3446778899999999999999875
No 347
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.03 E-value=0.00033 Score=50.32 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=20.9
Q ss_pred cCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
..++.. ++++|++|||||||++.+.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334444 557799999999999999873
No 348
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00039 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999998875
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.02 E-value=0.00045 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456788899999999999999875
No 350
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=0.00049 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999885
No 351
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.02 E-value=0.001 Score=54.85 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.0
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++. .++++|+.|||||||++.+.+-
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34333333 5668899999999999999986
No 352
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.02 E-value=0.0004 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|++|||||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3567899999999999999998643
No 353
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0017 Score=49.35 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=23.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++..+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778889999999999999998864
No 354
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.01 E-value=0.00093 Score=46.14 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4456888899999999999988764
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.01 E-value=0.00039 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+..-++++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3444566889999999999999886
No 356
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.01 E-value=0.00042 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...|+++|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45567889999999999999999875
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.99 E-value=0.00057 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~ 42 (194)
.+...|+++|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999998
No 358
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.99 E-value=0.00076 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.-|+|.|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556778899999999999998764
No 359
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.99 E-value=0.00045 Score=47.17 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999876
No 360
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.99 E-value=0.00051 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456888999999999999999853
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.98 E-value=0.00039 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+++|++||||||+.+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 362
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.97 E-value=0.00072 Score=55.93 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=23.4
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 334343333 5668899999999999999986
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.97 E-value=0.00076 Score=52.58 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...+..++...+.. .+++.|++|+|||||++.+.+.
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455666666555444 5567799999999999999863
No 364
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.96 E-value=0.00081 Score=52.66 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++.. +.++|++|||||||++.+.+-
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 33444444444 458899999999999999985
No 365
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.96 E-value=0.00044 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++|||||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5668899999999999999864
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.95 E-value=0.0007 Score=52.52 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.. +...++++|+.|||||||++.+.+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4444333 4457778899999999999999986
No 367
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.95 E-value=0.00044 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-++++|++|||||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 356788999999999999999 53
No 368
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.94 E-value=0.00083 Score=55.58 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=29.3
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~i~~~g 416 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY--------DVDRGQILVDG 416 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS--------CCSEEEEEETT
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc--------CCCCeEEEECC
Confidence 344343333 56688999999999999999862 33445555555
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.94 E-value=0.00081 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4446778899999999999999874
No 370
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.94 E-value=0.00055 Score=52.43 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=25.6
Q ss_pred HHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
++..+++.. +.-.++++|++|||||||++.+.+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444332 33467789999999999999999863
No 371
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.94 E-value=0.00058 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=22.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+...|++.|++||||||+.+.|...
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999998753
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.94 E-value=0.00051 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998753
No 373
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.93 E-value=0.00015 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-.++++|++|||||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3467789999999999999998763
No 374
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.92 E-value=0.0007 Score=53.52 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+ +..+.--++++|+.||||||+++.+.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34444 3344446778899999999999998874
No 375
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.92 E-value=0.00055 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..++-++++|++||||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455677999999999999998865
No 376
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.90 E-value=0.00068 Score=55.86 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++..++. .++++|+.|||||||++.+.+- ..++.+.+.++|
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g 402 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDG 402 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECC
Confidence 334333333 5668899999999999999886 234445555555
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.90 E-value=0.00061 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|++.|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356888999999999999998764
No 378
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.00063 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|.+||||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456778899999999999998753
No 379
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.89 E-value=0.00062 Score=49.03 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 380
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.89 E-value=0.00063 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..-++++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567889999999999998875
No 381
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00074 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34677889999999999999875
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.87 E-value=0.00064 Score=47.44 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999976
No 383
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.86 E-value=0.00044 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-+++++|++|||||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999998763
No 384
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.84 E-value=0.00051 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999999874
No 385
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.84 E-value=0.00066 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...++++|++||||||+++.+.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34447889999999999999998764
No 386
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.84 E-value=0.00062 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 387
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.0007 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|+++|++||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999876
No 388
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.83 E-value=0.00041 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~ 45 (194)
++++|+.||||||+++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 4467999999999999999763
No 389
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.82 E-value=0.00077 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+..+|+ ++|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344555 6699999999999998865
No 390
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.82 E-value=0.00075 Score=47.23 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|++.|++||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999998864
No 391
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.81 E-value=0.00071 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-++++|++|||||||++.+.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998873
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.80 E-value=0.00087 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++.|++.|++||||||+.+.+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999998753
No 393
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.79 E-value=0.0012 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34557888899999999999988764
No 394
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.79 E-value=0.00068 Score=49.89 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++||||||+.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3568899999999999998753
No 395
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.78 E-value=0.0014 Score=47.12 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5567889999999999999988753
No 396
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.78 E-value=0.00078 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999999986
No 397
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.78 E-value=0.00074 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999998763
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.77 E-value=0.001 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++|++||||||+++.+.+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445889999999999999999875
No 399
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.77 E-value=0.001 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34667889999999999999885
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.76 E-value=0.00089 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999999999875
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.75 E-value=0.00088 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999999876
No 402
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.74 E-value=0.04 Score=40.43 Aligned_cols=77 Identities=6% Similarity=0.004 Sum_probs=47.4
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVR 144 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~ 144 (194)
+.+.++|+|+... ......+..+|.+++++..+. .+.......+..+... ..+.++.+|+|+.+... ...++.
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~~~~--~~~~~~ 217 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFKKNR--THKTLF 217 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEECTTC--SCCHHH
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEecccCcc--hHHHHH
Confidence 5688999988652 233445667999999998754 3455554444444322 23567889999994322 234555
Q ss_pred hhhc
Q psy2159 145 HFFG 148 (194)
Q Consensus 145 ~~~~ 148 (194)
+.++
T Consensus 218 ~~l~ 221 (267)
T 3k9g_A 218 EILK 221 (267)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5553
No 403
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.74 E-value=0.0016 Score=43.50 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998865
No 404
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.73 E-value=0.00094 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3577889999999999999875
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.72 E-value=0.00093 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45888999999999999999875
No 406
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.71 E-value=0.00093 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|++||||||+++.+.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4446778899999999999999874
No 407
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.0017 Score=50.11 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=29.1
Q ss_pred CccHHHHHHHHHHHhCCcC---CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 1 MFEIWTKFREVLLRLGLWK---KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
|+.+-......+..+.... ...+++++|++|+||||+.+.+..
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455555555666654322 234688999999999999987765
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.70 E-value=0.0011 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++.|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446889999999999999999864
No 409
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.70 E-value=0.00034 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|++.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999998753
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.70 E-value=0.00085 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|+.||||||+++.+.+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4558899999999999988863
No 411
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.0012 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.++|++||||||++.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5678899999999999998863
No 412
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0064 Score=43.82 Aligned_cols=89 Identities=18% Similarity=0.032 Sum_probs=46.8
Q ss_pred cCCCCeEEEE--cCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEE-EcCCCccchhhHhhh--------h
Q psy2159 18 WKKSGKLLFL--GLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH-DLGGHVQARRVWRDY--------F 86 (194)
Q Consensus 18 ~~~~~~i~v~--G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-d~~g~~~~~~~~~~~--------~ 86 (194)
..|+=||+|+ |+++.||++|++++++.....-..+.+.+. ...|-...+.+| |.-.. .......+ -
T Consensus 24 ~~P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~i~k~v~w-~TKYYsa~V~IwVDe~~~--l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 24 QYPQNKILVLSDHPHNFLKTQFLQDLFHCSSTGISIVKDQTW-ENRYYKVHFDLYIDSCKD--IPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCCCCEEEEEEEGGGHHHHHHHHHHHHCCCCCSSCEEEEEEE-ECSSCEEEEEEEEEEESC--HHHHHHHHTSGGGHHHH
T ss_pred ecCCCceEEEecCcccccHHHHHHHHhcccccccccccCCee-eeceEEEEcceEEEecCC--HHHHHHHhcCHHHHHHH
Confidence 3466688877 999999999999999874221111111121 111112345554 44321 11111111 1
Q ss_pred hcCCEEEEEEECCCCCChHHHHH
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKY 109 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~ 109 (194)
.-.+++|+|++...+.....+..
T Consensus 101 ~viggII~~f~~p~~~~~~~i~~ 123 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLHQ 123 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHHH
T ss_pred HhcceEEEEEeCCCcchHHHHHH
Confidence 22478999998766554544443
No 413
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.67 E-value=0.0017 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5668899999999999999886
No 414
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.67 E-value=0.0019 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35778899999999999988753
No 415
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.66 E-value=0.0011 Score=50.71 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCccchhh----Hhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRV----WRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.+.|++|....... .... .-..|-.++++|.... .+.......+... -....+++||.|...
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~----~~it~iilTKlD~~a 282 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA----VKIDGIILTKLDADA 282 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----SCCCEEEEECGGGCS
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh----cCCCEEEEeCcCCcc
Confidence 44667899996532221 1111 1247889999997664 2444444444321 123478899999633
No 416
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.66 E-value=0.00099 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.--++++|++|+|||||++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333456779999999999999884
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.66 E-value=0.0013 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999984
No 418
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.65 E-value=0.00092 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-|++.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345668899999999999998875
No 419
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.64 E-value=0.00091 Score=53.82 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-++++|++||||||+++.+.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 455889999999999998876
No 420
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.62 E-value=0.0077 Score=47.01 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34568889999999999999999764
No 421
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.62 E-value=0.0013 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445678899999999999998753
No 422
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.61 E-value=0.0014 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35668889999999999999999874
No 423
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.0025 Score=44.98 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 424
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.59 E-value=0.0014 Score=48.08 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445788899999999999999876
No 425
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.59 E-value=0.0014 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445667799999999999998864
No 426
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.59 E-value=0.0015 Score=49.05 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=21.6
Q ss_pred hCCcCCCCeE-EEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKL-LFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i-~v~G~~~~GKStli~~~~~~ 44 (194)
+....++..+ +++|++|+|||||++.+.+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3334444444 57799999999999988753
No 427
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.58 E-value=0.0013 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457789999999999999999864
No 428
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.58 E-value=0.0013 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.-.+++|+.||||||+++.+..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999865
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.58 E-value=0.0014 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++.++|+|||||||+.+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988763
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.57 E-value=0.0012 Score=48.61 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHHHhCCcCC----CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 11 VLLRLGLWKK----SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 11 ~~~~~~~~~~----~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.+++... ...|+++|++||||||+.+.+.+
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 45788999999999999999976
No 431
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.56 E-value=0.017 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|+||+|||++++.+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999875
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0012 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|+.|||||||++.+.+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4446779999999999999999875
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.53 E-value=0.0019 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|+.||||||+++.+.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4558899999999999988863
No 434
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.53 E-value=0.0018 Score=46.97 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
-+.+...|+++|++||||||+.+.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667889999999999999999885
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0017 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+.-+++.|+||+|||++++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456667799999999999999865
No 436
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.53 E-value=0.0019 Score=48.54 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999986664
No 437
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0019 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998877
No 438
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.50 E-value=0.002 Score=51.24 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.+..+ +..... ++.++|++|||||||++.+.+..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44555 454444 66789999999999999999863
No 439
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.49 E-value=0.0023 Score=45.48 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444556779999999999999986
No 440
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0019 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999865
No 441
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.46 E-value=0.002 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++.|++|+|||++++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456888899999999999999864
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0024 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999863
No 443
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.45 E-value=0.0016 Score=58.58 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-++.++|++|||||||++.+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457889999999999999999986
No 444
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.003 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...++ .++..+++.||||+|||++++++.+.
T Consensus 206 ~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 206 KFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4555653 45678889999999999999999975
No 445
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0033 Score=49.80 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=26.8
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+|+ .++.-+++.||||+|||++++++.+.
T Consensus 196 ~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45566664 34557889999999999999999975
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.44 E-value=0.0011 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.-|++.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456688999999999999998875
No 447
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0029 Score=48.47 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998874
No 448
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.43 E-value=0.0011 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-++++|+.|||||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 455889999999999999998643
No 449
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.43 E-value=0.0017 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-++.++|++|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447779999999999999999987
No 450
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.42 E-value=0.0033 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6888899999999999998864
No 451
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0017 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.--++++|++|+|||||+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445567899999999999999873
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.41 E-value=0.0019 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999986
No 453
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.40 E-value=0.0022 Score=48.27 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34556888899999999999999875
No 454
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0036 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.2
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 205 ~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 205 EIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35556663 45668889999999999999999975
No 455
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.38 E-value=0.0036 Score=56.41 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=29.7
Q ss_pred HhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++.. +.-.++++|+.|||||||++.+.+- ..++.+.+.++|
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--------~~~~~G~I~idG 479 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--------YDVLKGKITIDG 479 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--------SCCSEEEEEETT
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhccc--------cccccCcccCCC
Confidence 344333 3346678899999999999999986 334455555555
No 456
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.38 E-value=0.0042 Score=48.03 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34457888899999999999998863
No 457
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0033 Score=49.28 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=27.5
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 171 pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 171 PELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 345566664 44567899999999999999999875
No 458
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.35 E-value=0.0058 Score=45.99 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-------CCC----cc-ccC-----------CCcceeEE-----------EeCCE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-------RTA----QH-MPT-----------LHPTSEEL-----------SMGDI 65 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-------~~~----~~-~~t-----------~~~~~~~~-----------~~~~~ 65 (194)
+.-.++++|++|+||||++..+... +.. .. .++ .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3446778899999999999987632 110 00 000 00000000 11345
Q ss_pred EEEEEEcCCCccchh-hH---hhhhh--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARR-VW---RDYFP--AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~-~~---~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+.++||+|...... .. ...+. ..+.+++|+|.+.. ...+..+...+ ..-+ ..-++.||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~----~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF----SSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT----SSSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH----hcCC-CCEEEEeCCCccc
Confidence 789999999764432 11 12222 35678899987752 33333322222 1112 2346679999754
No 459
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.33 E-value=0.0022 Score=52.37 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-.++++|+.|||||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 356688999999999999999864
No 460
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.32 E-value=0.0058 Score=45.90 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46888899999999999998864
No 461
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.32 E-value=0.0019 Score=51.87 Aligned_cols=30 Identities=13% Similarity=-0.034 Sum_probs=22.4
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++--++++|+.|||||||++.+.+.
T Consensus 23 vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 23 RTFDFDELVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEECCSSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEccceEEEECCCCCcHHHHHHHHhcC
Confidence 334444434568899999999999999874
No 462
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.0045 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998864
No 463
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.003 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++..+++.|++|+|||++++.+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34567888999999999999999874
No 464
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.31 E-value=0.0065 Score=45.98 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+....+.. +...+++.|++|+|||+|+..+...
T Consensus 140 ~~~~i~~~~~~-~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 140 ILDFVEQYPSA-EQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHCSCS-SCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcccc-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444443311 3568889999999999999988753
No 465
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.30 E-value=0.0026 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.1
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~ 42 (194)
-.+++|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34677999999999999875
No 466
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.0027 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+||||+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457788899999999999998863
No 467
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0024 Score=44.98 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999999876
No 468
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.25 E-value=0.0043 Score=55.76 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.-.+.++|+.|||||||++.+.+-. .++.+.+.++|
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~--------~~~~G~i~i~g 451 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLY--------DPLDGMVSIDG 451 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSS--------CCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEECC
Confidence 3356688999999999999998862 23445555555
No 469
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.24 E-value=0.0028 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998864
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0035 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+||||+++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44557888899999999999998864
No 471
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.21 E-value=0.0023 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34788899999999999999864
No 472
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.21 E-value=0.0045 Score=50.59 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..++...+...++++|++|+||||+++.+.+.
T Consensus 99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344444445667889999999999999998865
No 473
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.21 E-value=0.0038 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++.|++|+|||++++.+.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999874
No 474
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.20 E-value=0.0026 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|+.|+|||||++.+.+...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3566889999999999999998643
No 475
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.19 E-value=0.0028 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567888899999999999999874
No 476
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.18 E-value=0.0027 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3456779999999999998875
No 477
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.18 E-value=0.0038 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|+||+|||++++.+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567889999999999999999864
No 478
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.15 E-value=0.002 Score=47.53 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=21.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+...|++.|.+||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345566778899999999999988764
No 479
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.13 E-value=0.0028 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+++.|++|+||||+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456888999999999999998864
No 480
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.11 E-value=0.0023 Score=42.66 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999988764
No 481
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0053 Score=48.93 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.9
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 233 e~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 233 ERFATLGI-DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp HHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35556653 45667888899999999999999875
No 482
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.10 E-value=0.0029 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||+|++.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999875
No 483
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.09 E-value=0.0079 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+++.|++|+|||++++.+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357888899999999999998854
No 484
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.07 E-value=0.0055 Score=47.22 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=23.3
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
++...+...++ ++|++|+|||||+..+...
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455566655 7799999999999999875
No 485
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.03 E-value=0.0039 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++|+.|||||||++.+.+.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5668899999999999999986
No 486
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.03 E-value=0.0039 Score=44.42 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..|++.|++||||||+.+.+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999988763
No 487
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.02 E-value=0.057 Score=40.77 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-+++-|++|+|||++++.+...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3445577999999999999865
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.02 E-value=0.0046 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|+++|++||||||+.+.+...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34556799999999999998764
No 489
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.01 E-value=0.0036 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|+.|||||||++.+.+...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3566889999999999999998643
No 490
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.01 E-value=0.0041 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|++.|.+||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45677899999999999998864
No 491
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.00 E-value=0.0073 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++ .++.-+++.||||+|||++++++.+.
T Consensus 207 ~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 207 LYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCCCceECCCCchHHHHHHHHHHH
Confidence 4555553 45567899999999999999999975
No 492
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.00 E-value=0.0043 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+++|++||||||+...+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999998864
No 493
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.00 E-value=0.0064 Score=48.78 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++.|+||+|||++++.+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999988764
No 494
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.98 E-value=0.0042 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56688999999999999999864
No 495
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.97 E-value=0.0042 Score=44.91 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=19.6
Q ss_pred CCcCCCC-eEEEEcCCCCChHHHHHHHHc
Q psy2159 16 GLWKKSG-KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 16 ~~~~~~~-~i~v~G~~~~GKStli~~~~~ 43 (194)
+...++. -+++.|++|+|||||+..+..
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3334444 455779999999999776653
No 496
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.97 E-value=0.004 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.6
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~ 42 (194)
-.+++|+.|||||||++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45588999999999999876
No 497
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.96 E-value=0.0051 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...+++.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999865
No 498
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.95 E-value=0.0042 Score=48.21 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999864
No 499
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.95 E-value=0.0049 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++|++|+||||+...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3445788899999999999999875
No 500
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.95 E-value=0.004 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46688999999999999999864
Done!