RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2159
(194 letters)
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 243 bits (622), Expect = 6e-83
Identities = 119/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGH+QARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 235 bits (601), Expect = 7e-80
Identities = 109/193 (56%), Positives = 136/193 (70%), Gaps = 5/193 (2%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
++I+ FR+VL LGLW K GKLLFLGLDNAGKT LL MLKNDR A PT HPTSEEL
Sbjct: 3 GWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL 62
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+D RF E++ ELD L L
Sbjct: 63 AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL 122
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
DVP +ILGNKID +A SE E+R GL T + + RP+E+FMCSV+ R
Sbjct: 123 KDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ-----RPVEVFMCSVVMRN 177
Query: 181 GFGNGFRWLANYI 193
G+ F+WL+ YI
Sbjct: 178 GYLEAFQWLSQYI 190
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 183 bits (468), Expect = 1e-59
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M ++ L L + ++L LGLDNAGKT +L L +PT+ E L
Sbjct: 3 MGAWLASLKQTLGLL-PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL 61
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
+I F DLGG R WR YF DA+++++D++DR R +K+EL LL +D L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+LI NK D+ DAASE E+ G+ + R + S
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN------------RTWTIVKSSSKTGD 169
Query: 181 GFGNGFRWLANYI 193
G G WL +
Sbjct: 170 GLVEGMDWLVERL 182
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 170 bits (433), Expect = 1e-54
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76
+ ++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
R WR Y+ DA+++++D+ DR R SK EL +L ++ L +++ NK D+
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
Query: 137 AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
A + E+ + GL L R ++F S K G WL +
Sbjct: 123 AMTSSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETL 167
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 167 bits (424), Expect = 4e-53
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M I++ +L K ++L LGLD AGKT +L L+ PT+ E L
Sbjct: 1 MGNIFSSM---FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL 57
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
S ++ DLGG R WR Y+ A++F++D++D+ R + EL +L ++ L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
D +L+ NK D A S EV L L R + S +K +
Sbjct: 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGE 165
Query: 181 GFGNGFRWLANYI 193
G G WL + I
Sbjct: 166 GITEGLDWLIDVI 178
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 166 bits (422), Expect = 6e-53
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGG 74
+ + K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74
Query: 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
R W Y+ + ++ ++D++DR R ++ EL +LA + L +LI NK D+
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + E+ F L + + C L +G G W+ + +
Sbjct: 135 KECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRL 181
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 161 bits (409), Expect = 7e-51
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M ++T+ + + K++ +GLDNAGKT +L + PT+ EE+
Sbjct: 1 MGILFTRIWRLF-----NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 55
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
+ + F D+GG R W Y+ + ++ ++D++DR R ++ EL +LA + L
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+LI NK D+ + + E+ F L + + C L +
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGE 163
Query: 181 GFGNGFRWLANYI 193
G G W+ + +
Sbjct: 164 GLCQGLEWMMSRL 176
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 157 bits (400), Expect = 2e-49
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLK--NDRTAQHMPTLHPTSEELSMGDIVFTTHDL 72
+ K +L LGLDN+GKT ++ LK N ++ +PT+ + E+ + FT D+
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74
Query: 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALT--DVPILILGN 130
G + R +W Y+ AI+F+ID+SDR R +K ELD LL + +PIL N
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
K+D+ DA + +V L + +P + +K +G G WL
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQ 182
Query: 191 NYI 193
+ I
Sbjct: 183 DQI 185
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 157 bits (399), Expect = 2e-49
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
+ I K + + ++L LGLDNAGKT LL+ L ++ + PT + +
Sbjct: 2 LLSILRKLK------SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV 55
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
D+GG + R WR YF D ++++ID++DR RF E+ EL LL ++ L
Sbjct: 56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 115
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+ VP+LI NK D+ AA E+ L+ + R ++ CS L +
Sbjct: 116 SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD------------RVWQIQSCSALTGE 163
Query: 181 GFGNGFRWLANYI 193
G +G W+ +
Sbjct: 164 GVQDGMNWVCKNV 176
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 152 bits (386), Expect = 3e-47
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
L KK ++L +GLD AGKT +L LK +PT+ E + +I FT D
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG + R +WR YF ++F++D++DR R ES EL +L +D L D +L+ NK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ +A E+ GL L + R + + G +G WL++
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWLSH 187
Query: 192 YI 193
+
Sbjct: 188 EL 189
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 151 bits (383), Expect = 3e-47
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R YF ++F++D++DR R E++ EL +LA+D L D +L+ NK D+ +A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ GL+ L R + G G WL+N +
Sbjct: 122 ITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQL 160
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 150 bits (381), Expect = 1e-46
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
L ++ ++ +LL LGLDNAGKT +L+ + PTL + L D
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWD 68
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG R WR+YF + D +++++D++DR R + + EL +LL ++ L +LI NK
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 128
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ A S + ++ L + + + CS + + G WL +
Sbjct: 129 QDLPGALSCNAIQEALELDSIRS------------HHWRIQGCSAVTGEDLLPGIDWLLD 176
Query: 192 YI 193
I
Sbjct: 177 DI 178
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 149 bits (379), Expect = 3e-46
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 16 GLWKKSGK----LLFLGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTH 70
GL + K L +GL +GKT + ++ + + + M PT+ +++ G++
Sbjct: 13 GLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLW 72
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130
D+GG + R +W Y V AIV+++DA+D+ + SK EL NLL L +P+L+LGN
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
K D+ A E E+ L + R + + S ++ +WL
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQD------------REICCYSISCKEKDNIDITLQWLI 180
Query: 191 NYI 193
+
Sbjct: 181 QHS 183
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 139 bits (352), Expect = 8e-42
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 15 LGLWKKSGK--LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDL 72
+G+ +KS + ++ G N+GKT LL +L D + + P S G T D
Sbjct: 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDF 62
Query: 73 GGHVQARRVWRDYFP----AVDAIVFIIDAS-DRSRFPESKYELDNLLADDALTD---VP 124
GHV+ R DY V ++F++D++ D + + L ++L+ + +
Sbjct: 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 122
Query: 125 ILILGNKIDIFDAASEDEVRH 145
ILI NK ++F A +++
Sbjct: 123 ILIACNKSELFTARPPSKIKD 143
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 137 bits (348), Expect = 1e-41
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 5 WTKFREVLLRLGLWKKSGK---LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELS 61
W ++ + L G ++ G N+GKT LL +L D + + P S
Sbjct: 29 WREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88
Query: 62 MGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFIIDAS-DRSRFPESKYELDNLLA 116
G T D GHV+ R DY V ++F++D++ D + + L ++L+
Sbjct: 89 DG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 147
Query: 117 DDALTD---VPILILGNKIDIFDAASEDEVR 144
+ + ILI NK ++F A +++
Sbjct: 148 ITESSCENGIDILIACNKSELFTARPPSKIK 178
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 137 bits (346), Expect = 8e-40
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 221
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R +WR YF ++F++D++DR R E++ EL +LA+D L D +L+ NK D+ +A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ E+ GL+ L R + G G WL+N +
Sbjct: 282 MNAAEITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQL 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 135 bits (340), Expect = 9e-38
Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 3 EIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM 62
+ + GL K ++L LGLD AGKT +L LK ++ +PT+ E ++
Sbjct: 304 ALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY 363
Query: 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTD 122
++ F D+GG + R +WR Y+ ++F++D +DR R E++ EL ++ D + D
Sbjct: 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD 423
Query: 123 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182
ILI NK D+ DA E++ GL + R + G
Sbjct: 424 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRD------------RNWYVQPSCATSGDGL 471
Query: 183 GNGFRWLANYI 193
G WL +
Sbjct: 472 YEGLTWLTSNY 482
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 125 bits (315), Expect = 2e-36
Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 21/181 (11%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGH 75
+LF+GL ++GKT L L + ++ +S + T DL GH
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 76 VQAR-RVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDNLLADDALT--DVPILILGNK 131
R ++ + + A+VF++D++ R + L +L D +LI NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
DI A S ++ E+ +R S L L
Sbjct: 125 QDIAMAKSAKLIQQQLEK------------ELNTLRVTRSAAPSTLD--SSSTAPAQLGK 170
Query: 192 Y 192
Sbjct: 171 K 171
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 105 bits (264), Expect = 6e-29
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-----------AQHMPTL-----HPTSEELSM 62
+ + K+++ G +GKT L+ + + + TL E+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD----- 117
F + + G V + VD IVF+ D S +R + + N+ +
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAESMRNMRENLAEYG 130
Query: 118 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177
L DVPI+I NK D+ DA + VR +
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----------------EGKFPVLEAVAT 174
Query: 178 KRQGFGNGFRWLANYI 193
+ +G + ++ +
Sbjct: 175 EGKGVFETLKEVSRLV 190
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 85.0 bits (210), Expect = 5e-21
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 17 LWKKSGKLLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSM-GDIVFTTHD 71
++L +GL +GK+ + + + T T +++S + F D
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75
Query: 72 LGGHVQARRVWRD---YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128
G + D F A++++IDA D ++ + A D+ +
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 129 GNKIDIFDAASEDEVR 144
+K+D + E +
Sbjct: 136 IHKVDGLSDDHKIETQ 151
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 75.8 bits (186), Expect = 8e-17
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 23 KLLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ 77
KLL +G +GK+ + T + T+ L G++ D GG
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 78 -----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL-TDVPILILGNK 131
+ F V ++ + D + + L D I +L +K
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 132 IDIFDAASEDEVR 144
+D+ +E+
Sbjct: 125 MDLVQLDKREELF 137
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 64.3 bits (156), Expect = 4e-13
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 19/132 (14%)
Query: 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA----DDALTD 122
G + VD +++ +A R E +++A +
Sbjct: 104 EGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSG 162
Query: 123 VPILILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181
P+L+L + H L L P + G
Sbjct: 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTG 209
Query: 182 FGNGFRWLANYI 193
F NG W+ +
Sbjct: 210 FLNGIEWILEEV 221
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 64.7 bits (157), Expect = 8e-13
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 24 LLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
+L +G+ GK+ + ++ T T +P+ E S I +L G +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYF 60
Query: 80 RVW---RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
F +V A+V++ID+ D + + A + I +L +K+D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 137 AASEDEVR 144
+ + +
Sbjct: 121 EDFKVDAQ 128
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 61.3 bits (148), Expect = 1e-11
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 19/126 (15%)
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA----DDALTDVPIL 126
G + VD +++ +A R E +++A + P+L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 127 ILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185
+L + H L L P + GF NG
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 298
Query: 186 FRWLAN 191
W+
Sbjct: 299 IEWILE 304
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.2 bits (137), Expect = 4e-10
Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 64/230 (27%)
Query: 3 EIWTKFREVLLRLGLWKKSGKLLFL-GLDNAGKTFL-LQMLKNDRTAQHMPTLHPTSEE- 59
+ + K R+ LL L + K + + G+ +GKT++ L + + + M +
Sbjct: 135 QPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKI 184
Query: 60 --LSMGDIVFTTHDLGGHVQA--RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLL 115
L++ + + + +Q ++ ++ D ++ + R + EL LL
Sbjct: 185 FWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLL 238
Query: 116 ADDA-------LTDV-------------PILILGNKIDIFDAAS---------------- 139
L +V IL+ + D S
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 140 -EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRW 188
DEV+ Y L + PRE+L P L + + R G W
Sbjct: 299 TPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TW 344
Score = 32.5 bits (73), Expect = 0.092
Identities = 23/166 (13%), Positives = 51/166 (30%), Gaps = 32/166 (19%)
Query: 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFT 68
W L + + F+ ++L+ + M + + SM ++
Sbjct: 60 AVSGTLRLFW-----TLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPSMMTRMYI 113
Query: 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128
Q R++ D + + SR + +L L + L +++
Sbjct: 114 E-------QRDRLYND--------NQVFAKYNVSR-LQPYLKLRQALLE--LRPAKNVLI 155
Query: 129 ------GNKIDIFDAASEDEV--RHFFGLYGLTTGKEFTPREILQM 166
G D +V + F ++ L +P +L+M
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 47.1 bits (111), Expect = 1e-06
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+ T + + + F D+GG RR W F V AI+F++ +S
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R E+ ++ + L + +++ NK D+
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 46.2 bits (109), Expect = 2e-06
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ESK ++ + +++ NK D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 43.9 bits (103), Expect = 1e-05
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+ T + D+ F D+GG R+ W F V AI+F + SD
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ES D++ + TD I++ NK D+F
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 42.8 bits (100), Expect = 2e-05
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR------- 101
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 102 ---SRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ES + ++ + ++V I++ NK D+
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 42.0 bits (98), Expect = 5e-05
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDAL 120
D+GG RR W F V A++F S+ ++R E+K D +L
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 121 TDVPILILGNKIDIF 135
++ NK DIF
Sbjct: 249 EKTSFMLFLNKFDIF 263
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 41.4 bits (97), Expect = 8e-05
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 9 REVLLRL-GLWKKSGKLLFLGLDNAGKTFLLQML---KNDRTAQHMPTLHPTSEELSMGD 64
REVL L + + ++ G N GK+ LL+ L K + + T + G
Sbjct: 154 REVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY 213
Query: 65 IVFTTHDLGG-----HVQARRVWRDYFPAV----DAIVFIIDASDRSRFPESKYELDNLL 115
+ D G + + + A+ + I++I D S+ FP +
Sbjct: 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273
Query: 116 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLT 153
D+P L++ NKID+ D + + F GL
Sbjct: 274 VHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN 311
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 40.4 bits (94), Expect = 2e-04
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-------------TAQHMPTLHPTSEELSMGDIVFTT 69
K+ +G AGKT LL+ L + + P + + + + +F
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 70 HDLGGHVQARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
D GG + + +V ++ D Y L ++ + P+++
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLL-----DSRTDSNKHYWLRHI--EKYGGKSPVIV 155
Query: 128 LGNKIDIFD--AASEDEVRHFF 147
+ NKID + ++ F
Sbjct: 156 VMNKIDENPSYNIEQKKINERF 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.0 bits (92), Expect = 3e-04
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 57 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA 116
L G + + L + Y AI+F++ AS P + E L
Sbjct: 169 LTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----PCTLGERRYLEN 224
Query: 117 DDALTDVPILILGNKIDIFDAASEDEVRH 145
+ + L N D + D
Sbjct: 225 YIKGRGLTVFFLVNAWDQVRESLIDPDDV 253
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 38.5 bits (90), Expect = 6e-04
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ + + D + R + +L ++PI++ GNK+DI D
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDR 134
Query: 138 ASEDEVRHF 146
+ + F
Sbjct: 135 KVKAKSIVF 143
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 36.3 bits (85), Expect = 0.004
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
A++ + D I+F+IDA++ R P + N + + P++++ NKID
Sbjct: 86 AKQSLEE----ADVILFMIDATEGWR-PRDEEIYQNFIKP---LNKPVIVVINKID 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.006
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 39/115 (33%)
Query: 49 HMPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF-IIDASD-RS 102
H L P S+ +L ++ F D+ P V+ D SD R
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQ------------IP-----VYDTFDGSDLR- 469
Query: 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHF--FGLYGLTTG 155
L +++ + D I+ + ++ ++ + H FG G +G
Sbjct: 470 -------VLSGSISER-IVD---CIIRLPVK-WETTTQFKATHILDFGP-GGASG 511
Score = 29.2 bits (65), Expect = 1.1
Identities = 34/167 (20%), Positives = 46/167 (27%), Gaps = 65/167 (38%)
Query: 57 SEELSMGDIVFTTHDLGGHVQARRVWR---DYF---------------PAVDAIVF---- 94
S+E MG ++ T A+ VW ++F P I F
Sbjct: 1626 SQEQGMGMDLYKTSKA-----AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 95 ---IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF---- 147
I R + +E D L IF +E + F
Sbjct: 1681 GKRI-----RENYSAMIFETI---VDGKLKTEK---------IFKEINEHSTSYTFRSEK 1723
Query: 148 GLYGLTTGKEFTPREILQMRP----MELFMCSVLKRQGFGNGFRWLA 190
GL T +FT Q P ME LK +G A
Sbjct: 1724 GLLSAT---QFT-----Q--PALTLMEKAAFEDLKSKGLIPADATFA 1760
Score = 27.7 bits (61), Expect = 3.1
Identities = 35/227 (15%), Positives = 67/227 (29%), Gaps = 78/227 (34%)
Query: 3 EIWTKFREVLLRLGLWKKSGK---LLFLGLDNAGKTFL---------LQMLKNDRT---- 46
E+ KF + L K G+ +L L L +L ++L+ + T
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 47 ----------AQHM---PTLHPTSEEL----SMGDI----VFTTHDLGGHVQA------- 78
A+ M P ++ L G+ +F GG Q
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF-----GG--QGNTDDYFE 171
Query: 79 --RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF- 135
R +++ Y V I +++ L L+ + + ++I
Sbjct: 172 ELRDLYQTYHVLVGD--LIKFSAET---------LSELIRTTLDAEK---VFTQGLNILE 217
Query: 136 ------DAASEDEVRHF---FGLYGLTTGKEF-TPREILQMRPMELF 172
+ +D + L G+ + ++L P EL
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.8 bits (81), Expect = 0.006
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
D ++F++D + E+ +PI ++ NK DI
Sbjct: 85 DRVLFMVDGTTT--DAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMS 135
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 35.4 bits (82), Expect = 0.006
Identities = 30/149 (20%), Positives = 49/149 (32%), Gaps = 31/149 (20%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFT--THDLGGHV--- 76
K+ +G GKT ++ ++L + T+ G + D G+V
Sbjct: 13 KICLIGDGGVGKTTYINRVLDGRFEKNYNATV---------GAVNHPVTFLDDQGNVIKF 63
Query: 77 -------QAR-RVWRD--YFPAVDAI-VFIIDASDRSRFPESKYELDNLLADDALTDVPI 125
Q + V +D Y A AI F D + R + + PI
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFF--DVTSRITCQNLARWVKEFQ-AVVGNEAPI 120
Query: 126 LILGNKIDIFD--AASEDEVRHFFGLYGL 152
++ NKIDI + S+ V
Sbjct: 121 VVCANKIDIKNRQKISKKLVMEVLKGKNY 149
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 35.1 bits (81), Expect = 0.007
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
K++ +G GKT LL + D ++PT+ + S E+ I + D G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA------DDALTDVPILILGNKI 132
V +P D +I PE+ LD++L + + +L++G K
Sbjct: 69 DNVRPLSYPDSD--AVLICFDISR--PET---LDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 133 D 133
D
Sbjct: 122 D 122
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 34.9 bits (80), Expect = 0.009
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT +LQ+L D ++PT+ + E + + D G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD------DALTDVPILILGNKI 132
V + D ++ PE+ +D+ L D +L++G K
Sbjct: 89 DNVRPLCYSDSD--AVLLCFDISR--PET---VDSALKKWRTEILDYCPSTRVLLIGCKT 141
Query: 133 D 133
D
Sbjct: 142 D 142
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 34.9 bits (80), Expect = 0.011
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 22/117 (18%)
Query: 79 RRVWRDYFPAVDAIVFIIDASDR--SRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
R+ + +V I+D D S P + + +L++GNK D+
Sbjct: 60 LRILNGIGKSDALVVKIVDIFDFNGSWLPG---------LHRFVGNNKVLLVGNKADLIP 110
Query: 137 -AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192
+ D+V+H+ + + L +P ++F+ S K QG + Y
Sbjct: 111 KSVKHDKVKHWM--------RYSAKQLGL--KPEDVFLISAAKGQGIAELADAIEYY 157
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 34.6 bits (79), Expect = 0.011
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 83 RDYFPAVDAIVFIIDASDRSR--FPESKYELDNLLADDALTDVPILILGNKID 133
D VD + ID S F + + NL A T PI+++ K D
Sbjct: 157 PDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCD 209
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.4 bits (79), Expect = 0.012
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLA--DDALTDVPILILGNKIDIFDAASEDEVR 144
I+FIID S++ + E NL ++ I+I NKID + S
Sbjct: 110 GVILFIIDISEQCGL--TIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDN 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 33.9 bits (78), Expect = 0.017
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 13/132 (9%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR---TAQHMPTL-------HPTSEELSMGDIVFTTHDL 72
KL+ +G +GKT LLQ L + T+ + D+V D
Sbjct: 4 KLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 73 GGHVQARRVWRDYFPAVDAIVFIIDASDR-SRFPESKYELDNLLADDALTDVPILILGNK 131
G + + + + D S + K L N+ + P++++G
Sbjct: 64 AGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVGTH 121
Query: 132 IDIFDAASEDEV 143
+D+ D
Sbjct: 122 LDVSDEKQRKAC 133
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 34.0 bits (79), Expect = 0.023
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
D V+A+V+++D PE + L + VPIL++GNK+D
Sbjct: 80 VYEALAD----VNAVVWVVDLRHPPT-PEDELVARAL--KPLVGKVPILLVGNKLD 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 33.8 bits (78), Expect = 0.026
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 69 THDLGGHV--QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL 126
+LG +ARRV+ D + + D++ P ++ ++P +
Sbjct: 96 VGELGRLRVEKARRVFYR----ADCGILVTDSA---PTPYEDDVVNLFKE----MEIPFV 144
Query: 127 ILGNKIDIFDAASED 141
++ NKID+ +E+
Sbjct: 145 VVVNKIDVLGEKAEE 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 33.4 bits (77), Expect = 0.030
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 90 DAIVFIIDASDRSRFPESKYE-LDNLLADDALTDVPILILGNKIDIFDAASEDEVR 144
DA++ +ID++ + +L + ++ PIL+ NKID + ++
Sbjct: 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD 314
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.9 bits (76), Expect = 0.051
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148
D ++ IDA+ + + + + + P++++ NKID+ + + +
Sbjct: 305 DLVLLTIDAAT----GWTTGDQEIY---EQVKHRPLILVMNKIDLVEKQLITSLEYPEN 356
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.9 bits (76), Expect = 0.057
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148
D ++F++DAS E +L + + + L++ NK+D+ + +E+E+++ G
Sbjct: 325 DIVLFVLDASS-----PLDEEDRKIL--ERIKNKRYLVVINKVDVVEKINEEEIKNKLG 376
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 32.2 bits (73), Expect = 0.074
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 79 RRVWRDYFPAVDAIVFIIDASD--RSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
+ + +V I+D D S P D PIL++GNK D+
Sbjct: 62 LSMLHRIGESKALVVNIVDIFDFNGSFIPG---------LPRFAADNPILLVGNKADLLP 112
Query: 137 AAS-----EDEVRHFFGLYGL 152
+ +R GL
Sbjct: 113 RSVKYPKLLRWMRRMAEELGL 133
Score = 28.0 bits (62), Expect = 2.3
Identities = 9/50 (18%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 8 FREVLLRLGLWKKSGKLLFLGLDNAGK-TFLLQMLKNDRTAQHMPTLHPT 56
+V+ + +++ G + +G N GK TF+ ++++ ++ T
Sbjct: 149 MAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF 198
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.1 bits (74), Expect = 0.083
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
D I++++D + E+ L A L + NK+D A
Sbjct: 314 DLILYLLDLGTER-LDDELTEIRELK--AAHPAAKFLTVANKLDRAANADALI 363
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 31.8 bits (73), Expect = 0.083
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLL-ADDALTDVPILILGNKID 133
A + + + + E ++ ++ D+P++++GNK D
Sbjct: 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 31.4 bits (72), Expect = 0.11
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
+ VDA+VF+ D F L + ++VP++++G + I
Sbjct: 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 31.4 bits (72), Expect = 0.11
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 146
IV+ +DR F + L VPI+++GNK D+ S +E R
Sbjct: 83 IVY--SIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 31.7 bits (73), Expect = 0.12
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
V+ ++F+++ + + P+ + L+ L P+++ NK+D
Sbjct: 89 VELVIFVVEGTRWT--PDDEMVLNKL----REGKAPVILAVNKVD 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 31.6 bits (71), Expect = 0.13
Identities = 22/174 (12%), Positives = 44/174 (25%), Gaps = 18/174 (10%)
Query: 23 KLLFLGLDNAGKTFLLQML----KNDRTAQHMPTLHPTSEELSMGDIVF---TTHDLGGH 75
+ G +GK+ + L + A + T E DL G
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 130
Query: 76 VQARRVWRDYFPAVDAI---VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKI 132
Y + FII ++ RF ++ ++ ++ + K+
Sbjct: 131 GSTNFPPDTYLEKMKFYEYDFFIIISAT--RFKKNDIDIAKAISMM---KKEFYFVRTKV 185
Query: 133 DIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL---FMCSVLKRQGFG 183
D D F + + + F+ S +
Sbjct: 186 DSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYD 239
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 30.9 bits (71), Expect = 0.15
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 146
IVF +DR F + L L A D+P++++GNK D+ S +E RH
Sbjct: 81 IVF--SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 135
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 31.4 bits (72), Expect = 0.16
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 111 LDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150
LDN+L V +I+ NKID+ + + E+ + +Y
Sbjct: 99 LDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIY 138
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 31.0 bits (71), Expect = 0.16
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 90 DAIVFIIDASDRSRFPESK--YELDNLLADDALTDVPILILGNKID 133
A + + R F S EL L A + +P L+LGNK+D
Sbjct: 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 31.0 bits (71), Expect = 0.17
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGL 149
IVF +DR F + L L A D+P++++GNK D+ S +E RH G
Sbjct: 102 IVF--SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159
Query: 150 YGL 152
Sbjct: 160 LSC 162
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 30.5 bits (70), Expect = 0.17
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
YF + + + + ++ F + + +L +VP L++GNK D
Sbjct: 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y + + + ++ F + + + + DVP++++GNK D
Sbjct: 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 30.7 bits (70), Expect = 0.17
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 77 QARRVWRD-YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Q + R+ + + V + D +DR F E + L +V ++++GNK D
Sbjct: 86 QEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 30.7 bits (70), Expect = 0.20
Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81
K++ G GK+ FL+++ KN+ TL G + F L V R
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATL---------G-VDFQMKTL--IVDGERT 77
Query: 82 ----W------------RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI 125
W + YF D ++ + D + F + +D + D A VPI
Sbjct: 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI-EDAAHETVPI 136
Query: 126 LILGNKIDIFDAASEDEVR 144
+++GNK DI D A+ + +
Sbjct: 137 MLVGNKADIRDTAATEGQK 155
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 30.7 bits (70), Expect = 0.23
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 74 GH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESK--YELDNLLADDALTDVPILILGN 130
GH +A+R +D V+ +V + DA R P + Y +D + +IL N
Sbjct: 6 GHIEKAKRQIKDLLRLVNTVVEVRDA----RAPFATSAYGVD-------FSRKETIILLN 54
Query: 131 KIDIFDAASEDEVRHFF 147
K+DI D + + FF
Sbjct: 55 KVDIADEKTTKKWVEFF 71
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 30.4 bits (69), Expect = 0.23
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 146
IV+ +DR+ F ++ L D+PI+++GNK D+ S E R
Sbjct: 117 IVY--SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 30.2 bits (69), Expect = 0.25
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y A + + +DR F E +L D P++++GNK D
Sbjct: 77 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 30.2 bits (69), Expect = 0.26
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y + + +S F + + + +L DVP++++GNK D
Sbjct: 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 30.3 bits (69), Expect = 0.28
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y + + + ++ F + + + DVP++++GNK D
Sbjct: 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 30.1 bits (68), Expect = 0.28
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 23 KLLFLGLDNAGKTFLLQ-MLKNDRTAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL K+ ++PT+ + E+ + D G
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA------DDALTDVPILILGNKI 132
R+ +P D V ++ S S P+S L+N+ +VPI+++GNK
Sbjct: 87 DRLRPLSYP--DTDVILMCFSIDS--PDS---LENIPEKWTPEVKHFCPNVPIILVGNKK 139
Query: 133 D 133
D
Sbjct: 140 D 140
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 30.6 bits (70), Expect = 0.30
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 111 LDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150
+D L ++ +++ NK+D++D +VR +Y
Sbjct: 104 IDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY 143
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 30.0 bits (68), Expect = 0.31
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
IV+ +DR+ F ++ L D+PI+++GNK D
Sbjct: 86 IVY--SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 30.1 bits (68), Expect = 0.32
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
K++ +G GKT LL + D ++PT+ + S E+ I + D G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 89
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA------DDALTDVPILILGNKI 132
V +P D +I PE+ LD++L + + +L++G K
Sbjct: 90 DNVRPLSYPDSD--AVLICFDISR--PET---LDSVLKKWKGEIQEFCPNTKMLLVGCKS 142
Query: 133 D 133
D
Sbjct: 143 D 143
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 29.8 bits (68), Expect = 0.34
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 94 FII--DASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
F+ ++ F + + +L +VP L++GNK D
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 29.9 bits (68), Expect = 0.37
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
+ V V + + F + L T VP++++GNK D
Sbjct: 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 29.7 bits (67), Expect = 0.37
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 21/123 (17%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQA 78
K + +G GKT LL + + + + + D G
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 79 RRVWRDYFPAVDAIV--FIIDASDRSRFPESKYELDNLLA------DDALTDVPILILGN 130
R+ +P D + F + S +N+ A + PI+++G
Sbjct: 67 DRLRPLSYPQTDVSLICFSLV---------SPASFENVRAKWYPEVRHHCPNTPIILVGT 117
Query: 131 KID 133
K+D
Sbjct: 118 KLD 120
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 29.8 bits (68), Expect = 0.38
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
IV+ +D+ F ++ L DVPI+++GNK D
Sbjct: 78 IVY--SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 29.8 bits (68), Expect = 0.38
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y + + + ++ F + + + DVP++++GNK D
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 29.9 bits (68), Expect = 0.39
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
VF I ++ F + + +L +VP L++GNK D
Sbjct: 91 CVFSI--TEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 29.4 bits (67), Expect = 0.50
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y + + ++ F + K D ++ VP++++GNK+D
Sbjct: 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 29.4 bits (66), Expect = 0.50
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ Y+ A + + D + F ++++ + L + A D+ I ++GNKID
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEG 124
Query: 139 SEDEV 143
E +V
Sbjct: 125 GERKV 129
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.5 bits (67), Expect = 0.57
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 122 DVPILILGNKIDIFDAASEDEVRHFFGLY 150
V LI+ NKID+ D D V +Y
Sbjct: 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIY 188
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 29.6 bits (67), Expect = 0.57
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 74 GHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKI 132
GH+ ARR + +D + ++DA R P S N + +D L + P ++L NK
Sbjct: 8 GHMAKARREVTEKLKLIDIVYELVDA----RIPMSSR---NPMIEDILKNKPRIMLLNKA 60
Query: 133 DIFDAASEDEVRHFF 147
D DAA + + F
Sbjct: 61 DKADAAVTQQWKEHF 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 29.0 bits (66), Expect = 0.59
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y ++ + + + F K LL +PI+++GNK D
Sbjct: 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 29.2 bits (66), Expect = 0.62
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 90 DAIVFIIDASDRSRFPESKY---ELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRH 145
D V + D + + F E + + P ++LGNKID+ + + +
Sbjct: 82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 141
Query: 146 FF 147
+
Sbjct: 142 WC 143
>1l1s_A Hypothetical protein MTH1491; structural genomics, PSI, protein
STRU initiative; 2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.114.1.1
Length = 113
Score = 28.3 bits (63), Expect = 0.66
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE 140
+VF ID D SR + NL+AD + ++ +++ SE
Sbjct: 6 VVFHIDEDDESRVLLLISNVRNLMADLESVRIEVVAYSMGVNVLRRDSE 54
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 28.9 bits (65), Expect = 0.75
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 21/123 (17%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D ++PT+ + E+ + D G
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRF--------PESKYELDNLLADDALTDVPILILGN 130
R+ +P D I+ PE K+ N VPI+++ N
Sbjct: 87 DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---------VPIILVAN 137
Query: 131 KID 133
K D
Sbjct: 138 KKD 140
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 29.0 bits (65), Expect = 0.79
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 20 KSGKLLFLGLDNAGKTFLLQML-KNDRTAQHMPTL---HPTSEELSMGDIVFTTHDLGGH 75
+S K++ +G GKT LL + + PT+ + + ++ + D G
Sbjct: 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA------DDALTDVPILILG 129
R+ ++P DA V ++ S P S DN+ + VPI+++G
Sbjct: 93 DDYDRLRPLFYP--DASVLLLCFDVTS--PNS---FDNIFNRWYPEVNHFCKKVPIIVVG 145
Query: 130 NKID 133
K D
Sbjct: 146 CKTD 149
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.7 bits (65), Expect = 0.82
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 90 DAIVFIIDASDRSRFPESKY---ELDNLLADDALTDVPILILGNKIDIFD---AASEDEV 143
D V + D ++ S F K E ++ P +ILGNKID + SE
Sbjct: 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 144 RHF 146
+
Sbjct: 143 QEL 145
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 28.8 bits (65), Expect = 0.86
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 71 DLGG-------HVQARRVW----RDYFPA----VDAIVFIIDASDRSRFPESKYELDNLL 115
D+ G + + + +D V ++D + + +
Sbjct: 50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP 109
Query: 116 ADDAL------TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164
D D+P ++ NK+D + EV +F + +
Sbjct: 110 IDVEFYQFLRELDIPTIVAVNKLD--KIKNVQEVINFLAE-KFEVPLSEIDKVFI 161
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 29.0 bits (65), Expect = 0.90
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 110 ELDNLLADDALTDVPILILGNKIDIFDAA 138
+L + VPI++ GN A
Sbjct: 143 QLPGMYNKQENARVPIIVTGNDFSTLYAP 171
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 28.6 bits (64), Expect = 0.97
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
K + +G GKT LL ND +++PT+ + S + + +D G
Sbjct: 20 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 79
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRF--------PESKYELDNLLADDALTDVPILILGN 130
R+ +P D + + + F PE K + +VP L++G
Sbjct: 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK---------EYAPNVPFLLIGT 130
Query: 131 KID 133
+ID
Sbjct: 131 QID 133
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 28.2 bits (64), Expect = 1.0
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 90 DAIVFIIDASDRSRFPESKY---ELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRH 145
D + D F E P +ILGNKIDI + S +E +
Sbjct: 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA 140
Query: 146 FFGLYG 151
+ G
Sbjct: 141 WCRDNG 146
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 28.6 bits (64), Expect = 1.1
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 21/127 (16%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPT-SEELSMGDIVFTTH--DLGG 74
++ K + +G GKT LL + +++PT+ S + + D G
Sbjct: 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87
Query: 75 HVQARRVWRDYFPAVDAIV--FIIDASDRSRFPESKYELDNLLA------DDALTDVPIL 126
R+ +P D + F + + P S +N+ A + PI+
Sbjct: 88 QEDYDRLRPLSYPQTDVFLICFSLVS------PAS---FENVRAKWYPEVRHHCPNTPII 138
Query: 127 ILGNKID 133
++G K+D
Sbjct: 139 LVGTKLD 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 28.7 bits (65), Expect = 1.2
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 92 IVFIIDASDRSRFPESKYE-LDNLLA--DDALTDVPILILGNKIDIFDAASEDEVRHFFG 148
+++++DA+D P E L + D AL P L+ NK+D+ + + +
Sbjct: 239 LLYVLDAADE---PLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA 295
Query: 149 LYGL 152
GL
Sbjct: 296 REGL 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 28.2 bits (64), Expect = 1.2
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLL--ADDALTDVPILILGNKID 133
A + + + R E K + + D +PI+++GNK D
Sbjct: 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCD 120
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 27.9 bits (63), Expect = 1.4
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
Y D + + +D++ F +L P++++ NK+D
Sbjct: 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 28.3 bits (64), Expect = 1.6
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 46/159 (28%)
Query: 9 REVLLRLGLWKKSGKLL----FLGLDNAGKTFLLQMLKNDR---TAQHMPTLHP------ 55
R ++L L K+L +G + GK+ LL ++ + + H TL P
Sbjct: 149 RYIVLEL-------KVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVE 201
Query: 56 --TSEELSMGDI---VFTTHD---LG----GHVQARRVWRDYFPAVDAIVFIIDASD-RS 102
M D+ + H LG H++ RV IV +ID S
Sbjct: 202 TDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV----------IVHVIDMSGLEG 251
Query: 103 RFPESKYE-LDNLLA--DDALTDVPILILGNKIDIFDAA 138
R P Y ++ L+ + LT+ P +I+ NK+D+ +AA
Sbjct: 252 RDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA 290
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 28.1 bits (63), Expect = 1.6
Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 21/126 (16%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGH 75
+ K + +G GKT LL ++ ++PT+ + ++ + D G
Sbjct: 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQ 66
Query: 76 VQARRVWRDYFPAVDA--IVFIIDASDRSRFPESKYELDNLLA------DDALTDVPILI 127
R+ + D + F + + S +N+ VPI++
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLIS------KAS---YENVSKKWIPELKHYAPGVPIVL 117
Query: 128 LGNKID 133
+G K+D
Sbjct: 118 VGTKLD 123
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 28.3 bits (64), Expect = 1.7
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 89 VDAIVFIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHF 146
VD V + A P S LD L D+ +I K+D+ D +ED ++ +
Sbjct: 87 VDQAVLVFSAVQ----PSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAY 142
Query: 147 FGLY 150
Y
Sbjct: 143 AEDY 146
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 27.3 bits (61), Expect = 2.3
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 23/128 (17%)
Query: 19 KKSGKLLFLGLDNA-GKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLG 73
KK+ K++ +G D A GKT LL ++PT+ + + + D
Sbjct: 21 KKALKIVVVG-DGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTA 79
Query: 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRF--------PESKYELDNLLADDALTDVPI 125
G + R+ + D ++ ++R+ F PE K+ +D
Sbjct: 80 GQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT---------AKT 130
Query: 126 LILGNKID 133
+++G K+D
Sbjct: 131 VLVGLKVD 138
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.4 bits (61), Expect = 2.6
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 21/126 (16%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGH 75
+ K + +G GKT L+ + +++PT + + D G
Sbjct: 19 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQ 78
Query: 76 VQARRVWRDYFPAVDAIV--FIIDASDRSRFPESKYELDNLLA------DDALTDVPILI 127
+ ++ + D + F + S N+ PI++
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVV---------SPSSFQNVSEKWVPEIRCHCPKAPIIL 129
Query: 128 LGNKID 133
+G + D
Sbjct: 130 VGTQSD 135
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 27.4 bits (60), Expect = 3.0
Identities = 10/78 (12%), Positives = 20/78 (25%), Gaps = 8/78 (10%)
Query: 29 LDNAGKTFLLQMLKNDRTAQHMPTLHP-TSEELSMGDIVFTTHDLGGHVQARRVWRDYFP 87
L NA Q+ + P + + + + H R+ P
Sbjct: 55 LCNASPDIRAQLQAF-------APMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCP 107
Query: 88 AVDAIVFIIDASDRSRFP 105
++ + FP
Sbjct: 108 HQVWCTDMVHQDLTTGFP 125
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 26.7 bits (60), Expect = 3.8
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 146
A V + +DR F + + + D+P ++ NKID+ D +E
Sbjct: 79 QACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGL 135
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 26.9 bits (60), Expect = 4.0
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 90 DAIVFII--DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRH 145
D+ V ++ D ++ + F ++ +D++ + +DV I+++GNK D+ D S +E
Sbjct: 88 DSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGER 146
Query: 146 F 146
Sbjct: 147 K 147
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 26.8 bits (60), Expect = 4.4
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 6/53 (11%)
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDNLLADD 118
L G + R + R + I + +R L ++ D
Sbjct: 226 LDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD 278
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 26.7 bits (60), Expect = 5.0
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 20/70 (28%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNLLADDAL-------TDVPILILGNKIDIFDAASEDE 142
D ++F++D + +D + V +++ NK + +
Sbjct: 83 DLVLFVVDGKR------------GITKEDESLADFLRKSTVDTILVANKAENLREFEREV 130
Query: 143 VRHFFGLYGL 152
+ L G
Sbjct: 131 KPELYSL-GF 139
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 26.4 bits (59), Expect = 6.3
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKT 35
R GLWK L LGLD G T
Sbjct: 123 YARDGLWKAWHPELLLGLDLQGLT 146
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 25.9 bits (57), Expect = 6.8
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-A 137
+ Y+ + + D S+ + +K ++ L + I+++ NKID
Sbjct: 107 ASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQ 163
Query: 138 ASEDEVRHF 146
EV+ +
Sbjct: 164 VDILEVQKY 172
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 26.4 bits (59), Expect = 6.9
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKT 35
++R W L +G KT
Sbjct: 125 MIRTRSWPGWEPLELVGEKLDNKT 148
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel, nucleus,
transport, gated channel; 1.95A {Homo sapiens} PDB:
3kjy_A
Length = 250
Score = 26.1 bits (57), Expect = 6.9
Identities = 15/122 (12%), Positives = 29/122 (23%), Gaps = 18/122 (14%)
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA--DDALTDVPILILGNKIDI 134
++ D F I ++ +L LA D L
Sbjct: 120 ESNTAGNDVFH---KFSAFIKNPVPAQDEALYQQLLRALARLDSYLRA-----PLEHELA 171
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--NGFRWLANY 192
+ + R F G T + + + + + R + Y
Sbjct: 172 GEPQLRESRRRFLD------GDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRY 225
Query: 193 ID 194
+D
Sbjct: 226 LD 227
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 26.1 bits (58), Expect = 7.0
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 90 DAIVFIIDASDRSRFPESKYELDNL--LADDALTDVPILILGNKIDIFD---AASEDEVR 144
+ + D S F K + L D + +++ NK D+ D +
Sbjct: 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQ 157
Query: 145 HF 146
+
Sbjct: 158 DW 159
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 26.4 bits (59), Expect = 7.4
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKT 35
++R G W G LG+ G+
Sbjct: 152 MVRSGSWPGWGPTQLLGMGLTGRR 175
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 26.0 bits (58), Expect = 7.5
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 146
A+VF+ D ++ + F ++ D+P +++GNK D+ D + F
Sbjct: 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 153
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 25.6 bits (57), Expect = 9.5
Identities = 13/49 (26%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 90 DAIVFII--DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
D+ V ++ D ++ + F ++ +D++ + +DV I+++GNK D+ D
Sbjct: 86 DSTVAVVVYDITNTNSFHQTSKWIDDV-RTERGSDVIIMLVGNKTDLSD 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.143 0.440
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,142,957
Number of extensions: 187614
Number of successful extensions: 1020
Number of sequences better than 10.0: 1
Number of HSP's gapped: 958
Number of HSP's successfully gapped: 176
Length of query: 194
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 106
Effective length of database: 4,244,745
Effective search space: 449942970
Effective search space used: 449942970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.9 bits)