BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy216
(650 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|427791807|gb|JAA61355.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1212
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 258/466 (55%), Gaps = 26/466 (5%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+K+ KA+N+LKVL++K WG R CLLR++ + VR I+DYG V+YGSA +S + +L+ V++
Sbjct: 739 VKANKALNLLKVLSHKHWGSDRLCLLRIYRSIVRSILDYGCVVYGSARESYIRRLDPVHN 798
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
LR+ SGAYRTSP+ESLY + +PPL RR L +Y R++ +P + I T
Sbjct: 799 LGLRLSSGAYRTSPVESLYVDCNEPPLSHRRASLTLSYVLRIRSSPQHICYDIATRCSSR 858
Query: 121 RN-INRANLPRTVKSRLEDL---QIFDRISAQVIKRDEYIAPW-ELSVPEIIYLTSEKKE 175
+ +N++NL + + R E+ + + V ++ I PW +L+ I L+ K+
Sbjct: 859 LHYLNKSNLIKPLLLRFEEYCRTYVISEETLDVARKPPRIPPWFDLAQLCDISLSHINKK 918
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
+ F + + ++ YTDGSKT + G +T + ++ S+F++E
Sbjct: 919 VTPPELIIQEFRALQEKYRDYAEFYTDGSKTRDHVGIGIVTGESAFSVRVPQCISIFTAE 978
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNIL--VKINE 293
+ A++ I + + I+ TDS S+L AL LV +IL V IN
Sbjct: 979 VYALYEAARKIIAGKHKKAIIY-------TDSLSALKALHIKSECEPLVGDILNMVLINS 1031
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWH 352
K+ I+++F W+PSH+GI GN + D+ A + + L + + +D + I+ LL++W
Sbjct: 1032 -KV--ISMRFCWVPSHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQ 1088
Query: 353 LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLC 412
W ++ +NKL +K WK+ ++R E+++CRLRIGH+HLTHNFLL +E+ P+C
Sbjct: 1089 QQW-DSCTSNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMC 1147
Query: 413 EWCNVQLSIQHILLECRKFRASRNKW-------HLKDDISALLGDD 451
E C L++ HIL+ C R K+ ++ + LLGDD
Sbjct: 1148 EKCQEPLTLIHILILCPNIETQRQKYFSKLYKQYIPLHPTLLLGDD 1193
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 417 VQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQ---VIKRDEYIA 473
++ S QHI + +SR + K ++ L +E + +IS + V ++ I
Sbjct: 840 IRSSPQHICYDIATRCSSRLHYLNKSNLIKPLLLRFEEYCRTYVISEETLDVARKPPRIP 899
Query: 474 PW-ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
PW +L+ I L+ K+ + F + + ++ YTDGSKT + G +T
Sbjct: 900 PWFDLAQLCDISLSHINKKVTPPELIIQEFRALQEKYRDYAEFYTDGSKTRDHVGIGIVT 959
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ ++ S+F++E+ A++ I + + I+ TDS S+L AL
Sbjct: 960 GESAFSVRVPQCISIFTAEVYALYEAARKIIAGKHKKAIIY-------TDSLSALKALHI 1012
Query: 593 IMSPNHLVNNIL--VKINELKILNITVKFLWIPSHLGIAGN 631
LV +IL V IN K+ I+++F W+PSH+GI GN
Sbjct: 1013 KSECEPLVGDILNMVLINS-KV--ISMRFCWVPSHVGIPGN 1050
>gi|427791321|gb|JAA61112.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1210
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 258/466 (55%), Gaps = 26/466 (5%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+K+ KA+N+LKVL++K WG R CLLR++ + VR I+DYG V+YGSA +S + +L+ V++
Sbjct: 736 VKANKALNLLKVLSHKHWGSDRLCLLRIYRSIVRSILDYGCVVYGSARESYIRRLDPVHN 795
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
LR+ SGAYRTSP+ESLY + +PPL RR L +Y R++ +P + I T
Sbjct: 796 LGLRLSSGAYRTSPVESLYVDCNEPPLSHRRASLTLSYVLRIRSSPQHICYDIATRCSSR 855
Query: 121 RN-INRANLPRTVKSRLEDL---QIFDRISAQVIKRDEYIAPW-ELSVPEIIYLTSEKKE 175
+ +N++NL + + R E+ + + V ++ I PW +L+ I L+ K+
Sbjct: 856 LHYLNKSNLIKPLLLRFEEYCRTYVISEETLDVARKPPRIPPWFDLAQLCDISLSHINKK 915
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
+ F + + ++ YTDGSKT + G +T + ++ S+F++E
Sbjct: 916 VTPPELIIQEFRALQEKYRDYAEFYTDGSKTRDHVGIGIVTGESAFSVRVPQCISIFTAE 975
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNIL--VKINE 293
+ A++ I + + I+ TDS S+L AL LV +IL V IN
Sbjct: 976 VYALYEAARKIIAGKHKKAIIY-------TDSLSALKALHIKSECEPLVGDILNMVLINS 1028
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWH 352
K+ I+++F W+PSH+GI GN + D+ A + + L + + +D + I+ LL++W
Sbjct: 1029 -KV--ISMRFCWVPSHVGIPGNEKADKCASLAAHKTLTKIRIPLKDSQRTIRLALLAKWQ 1085
Query: 353 LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLC 412
W ++ +NKL +K WK+ ++R E+++CRLRIGH+HLTHNFLL +E+ P+C
Sbjct: 1086 QQW-DSCTSNKLHLVKPTLGEWKNCRHQERFIEVILCRLRIGHTHLTHNFLLTKEEQPMC 1144
Query: 413 EWCNVQLSIQHILLECRKFRASRNKW-------HLKDDISALLGDD 451
E C L++ HIL+ C R K+ ++ + LLGDD
Sbjct: 1145 EKCQEPLTLIHILILCPNIETQRQKYFSKLYKQYIPLHPTLLLGDD 1190
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 417 VQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCIIISAQ---VIKRDEYIA 473
++ S QHI + +SR + K ++ L +E + +IS + V ++ I
Sbjct: 837 IRSSPQHICYDIATRCSSRLHYLNKSNLIKPLLLRFEEYCRTYVISEETLDVARKPPRIP 896
Query: 474 PW-ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
PW +L+ I L+ K+ + F + + ++ YTDGSKT + G +T
Sbjct: 897 PWFDLAQLCDISLSHINKKVTPPELIIQEFRALQEKYRDYAEFYTDGSKTRDHVGIGIVT 956
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ ++ S+F++E+ A++ I + + I+ TDS S+L AL
Sbjct: 957 GESAFSVRVPQCISIFTAEVYALYEAARKIIAGKHKKAIIY-------TDSLSALKALHI 1009
Query: 593 IMSPNHLVNNIL--VKINELKILNITVKFLWIPSHLGIAGN 631
LV +IL V IN K+ I+++F W+PSH+GI GN
Sbjct: 1010 KSECEPLVGDILNMVLINS-KV--ISMRFCWVPSHVGIPGN 1047
>gi|125901787|gb|ABN58714.1| pol-like protein [Biomphalaria glabrata]
Length = 1222
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 149/444 (33%), Positives = 243/444 (54%), Gaps = 19/444 (4%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K K++NIL+VL++ WG R LL L+ + +R +DYG++IYG+A +S L L + +
Sbjct: 758 KCQKSLNILRVLSHTDWGADRDTLLLLYRSLIRSKLDYGSIIYGAARKSYLKILEPIQNA 817
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPV-SLILTHAQLG 120
ALR+ GA+RTSPI SL+ E G+ P++ R K L Y ++K NP+NP I ++
Sbjct: 818 ALRLCLGAFRTSPIPSLHVEAGELPMDIRMKKLAMQYIVKLKSNPTNPAFDSIFNPTEVE 877
Query: 121 RNINRANLPRTVKSRLED-----LQIFDRISAQVIKRDEYIAPWELSVPEI-IYLTSEKK 174
R N+ + + R+ + Q D+IS ++ PW ++ P++ + L + KK
Sbjct: 878 LYNRRPNVIQPLGLRMREPIQNLTQPIDQISKIETPQN---PPWLMNKPKLNLSLLNFKK 934
Query: 175 ENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSS 234
EN ++ F + + + YTDGSK CA ++ +L + S+F++
Sbjct: 935 ENTDPSILQVHFRELQESYGDCGTIYTDGSKMEGKVACACSFRNKTISRRLPDGCSIFTA 994
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINEL 294
EL AI + L + + R IC+DSKS+L AL + + LV+ L ++ +
Sbjct: 995 ELHAILLALMAVKASE-------RSKFIICSDSKSALQALGRMKTDIPLVHKSLKLLDLI 1047
Query: 295 KILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-APLLSMMTSEDLKSAIKKKLLSEWHL 353
V F+W+PSH+GI GN D AK + N A + + DL+ +I EW
Sbjct: 1048 TADRRDVTFIWVPSHVGIEGNEAADREAKRALNHAVSGTQIPYSDLRQSIASATYREWQN 1107
Query: 354 HWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCE 413
W+ ++KLR+I D +S RR + RLRIGH+++TH+F+LKRE+PPLCE
Sbjct: 1108 RWEAET-HSKLRQIVADVRWRPTSKGLTRRGSTTMSRLRIGHTYITHSFVLKREEPPLCE 1166
Query: 414 WCNVQLSIQHILLECRKFRASRNK 437
+C+ +L+++HIL++C +++ R K
Sbjct: 1167 YCDSRLTVEHILVDCPRYQDVRAK 1190
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 474 PWELSVPEI-IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
PW ++ P++ + L + KKEN ++ F + + + YTDGSK CA
Sbjct: 917 PWLMNKPKLNLSLLNFKKENTDPSILQVHFRELQESYGDCGTIYTDGSKMEGKVACACSF 976
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
++ +L + S+F++EL AI + L + + S R+++I IC+DSKS+L AL
Sbjct: 977 RNKTISRRLPDGCSIFTAELHAILLALMAVKA-SERSKFI------ICSDSKSALQALGR 1029
Query: 593 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ + LV+ L ++ + V F+W+PSH+GI GN
Sbjct: 1030 MKTDIPLVHKSLKLLDLITADRRDVTFIWVPSHVGIEGN 1068
>gi|427791063|gb|JAA60983.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1035
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 225/450 (50%), Gaps = 31/450 (6%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILK+L++ TWG R CL+ ++ + VR +DYG+V+Y SA S+L L+ ++H
Sbjct: 598 KCLKTMNILKILSHTTWGSDRKCLMDIYKSLVRTRLDYGSVVYHSAAPSALKILDPIHHL 657
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPV--------SLI 113
+R+ +GA+RTSP++SLY E+ Q L +R + Y +VK +P S +
Sbjct: 658 GIRLATGAFRTSPVQSLYVESNQWSLHLQRSYMSFVYFLKVKAEKEHPAHSTVNDLSSSV 717
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQ---VIKRDEYIAPWELSVPEIIYLT 170
L H NR ++ + R+ DL +S ++ R Y+ PW+ + E
Sbjct: 718 LYH-------NRPSVRQPYSLRVRDLAEEMGLSLHEHSLMARAAYLPPWQWQLIECDVSF 770
Query: 171 SEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS 230
+ ++ + F + + + F +TD SK ++ A + + S L+ S
Sbjct: 771 EQVTKHAPHAHIYTYFLELQHKYTFPEF-FTDASKFNSSVSYAAVGPSFSDAGVLHQNTS 829
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILV 289
+F++E AIF+ + HI E + S I TDS S + ALK + N ++ ++
Sbjct: 830 IFTAEAYAIFVAVKHI-------EQLKLPSAVIYTDSLSVVKALKTLKKHKNPVLASLYS 882
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--APLLSMMTSEDLKSAIKKKL 347
+ + L V W+P H I GNV D+LA ++ A + + DLK +K+KL
Sbjct: 883 LLCTVYALKQHVVVCWVPGHREIQGNVLADQLAASAHENAAHTFLAIPALDLKPLLKRKL 942
Query: 348 LSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRE 407
+ W W NKL IK W + K RR EI + RLR GH+H TH +LL
Sbjct: 943 RAYWQSIWDTQT-QNKLHAIKPQLGEWPPA-SKSRRTEITLTRLRTGHTHTTHAYLLSGN 1000
Query: 408 DPPLCEWCNVQLSIQHILLECRKFRASRNK 437
DPP CE C L++ HIL++C + A R K
Sbjct: 1001 DPPRCERCGEPLTVLHILIQCNELDAMRRK 1030
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 9/169 (5%)
Query: 465 VIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAA 524
++ R Y+ PW+ + E + ++ + F + + + F +TD SK +
Sbjct: 749 LMARAAYLPPWQWQLIECDVSFEQVTKHAPHAHIYTYFLELQHKYTFPEF-FTDASKFNS 807
Query: 525 NSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSK 584
+ A + + S L+ S+F++E AIF+ + HI E + S I TDS
Sbjct: 808 SVSYAAVGPSFSDAGVLHQNTSIFTAEAYAIFVAVKHI-------EQLKLPSAVIYTDSL 860
Query: 585 SSLLALKNIMS-PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 632
S + ALK + N ++ ++ + + L V W+P H I GNV
Sbjct: 861 SVVKALKTLKKHKNPVLASLYSLLCTVYALKQHVVVCWVPGHREIQGNV 909
>gi|427778603|gb|JAA54753.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1397
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 149/498 (29%), Positives = 243/498 (48%), Gaps = 75/498 (15%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+K LK +N+LK+L++++WG R CL+ LF + V +DYG++IY SA++++L L+ VYH
Sbjct: 856 LKCLKTMNLLKILSHQSWGTDRYCLITLFRSLVLSRIDYGSIIYQSASKTALKLLDPVYH 915
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
+R+ GA+RTSP++SLYAE+ Q PL+ +R L Y TR+ +P ++
Sbjct: 916 LGIRLALGAFRTSPVQSLYAESDQWPLDYQRTYLGVTYATRIMSLKQHPCKSLMNDVSTT 975
Query: 121 R-NINRANLP-----------RTVKSRLEDLQIFDRISAQ-------------------- 148
+ INR ++ +K EDLQ D++ Q
Sbjct: 976 QLYINRPSISPPFPLAIRPVVEKLKIHFEDLQEIDQVEXQHPCKALMNDVSTTQLYINRP 1035
Query: 149 -------------------------VIKRDEYIAPWELSVPEIIYLTSE--KKENLSSVA 181
I + E I PW+ P I + + KK+ +
Sbjct: 1036 SISPPFPLAIRPVVEKLKIHFEDLQEIDQVEVIPPWK-QCPIICDWSFKDLKKKTAPNAL 1094
Query: 182 VKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFM 241
++ F + + +++ F ++DGSK+ + CA E+ S L+ S+F++E I +
Sbjct: 1095 IQQHFLALEHKYRSAAF-FSDGSKSQTSVSCAAYGESFSDAKTLHAHTSIFTAEAYGILL 1153
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALK-NIMSPNHLVNNILVKINELKILNIT 300
++ HI +++ R S+ I TDS S + AL S N + N +L ++E N++
Sbjct: 1154 IVEHI------KQHMIRRSI-IYTDSLSVVTALSCGKCSKNPVFNKLLNNMHEAYNQNLS 1206
Query: 301 VKFLWIPSHLGIAGNVQVDELAKN--SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNN 358
+ W+P H GI GN VD+ A+ S++ +S + DL +++ L S W + W
Sbjct: 1207 IVLCWVPGHAGITGNEMVDKNAREAASRHTIDISSVPGVDLNPVVRRGLRSHWQVEWDKQ 1266
Query: 359 VINNKLRRIKEDTLLWKSSFDK-DRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNV 417
V +NKL +K L K K +R E+ + RLRIGH++ TH LL DPP C C
Sbjct: 1267 V-DNKLHLVKPH--LSKVLPQKLNRFTEVTLARLRIGHTYATHKHLLTGTDPPTCIHCGE 1323
Query: 418 QLSIQHILLECRKFRASR 435
L+I H+L+EC R
Sbjct: 1324 TLTILHVLIECPGLHQER 1341
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 464 QVIKRDEYIAPWELSVPEIIYLTSE--KKENLSSVAVKNAFFQFKGENQNSLFCYTDGSK 521
Q I + E I PW+ P I + + KK+ + ++ F + + +++ F ++DGSK
Sbjct: 1060 QEIDQVEVIPPWK-QCPIICDWSFKDLKKKTAPNALIQQHFLALEHKYRSAAF-FSDGSK 1117
Query: 522 TAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581
+ + CA E+ S L+ S+F++E I +++ HI +++ R SI I T
Sbjct: 1118 SQTSVSCAAYGESFSDAKTLHAHTSIFTAEAYGILLIVEHI------KQHMIRRSI-IYT 1170
Query: 582 DSKSSLLALK-NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
DS S + AL S N + N +L ++E N+++ W+P H GI GN V
Sbjct: 1171 DSLSVVTALSCGKCSKNPVFNKLLNNMHEAYNQNLSIVLCWVPGHAGITGNEMV 1224
>gi|427798887|gb|JAA64895.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 140/446 (31%), Positives = 220/446 (49%), Gaps = 23/446 (5%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ TWG + CL+ L+ + +R +DYGA+IY SA+ ++L L+ V+H
Sbjct: 764 KCLKTMNILKVLSRTTWGSDKKCLMNLYKSLIRTRLDYGAIIYQSASPTALKMLDPVHHL 823
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV---KCNPSNPVSLILTHAQ 118
+R+ +GA+RTSP+ESLY E+ + L +R + Y +V K +PS+ L+ +
Sbjct: 824 GIRLSTGAFRTSPVESLYVESNEWSLHLQRSYMSFLYYLKVNADKEHPSHSTINDLSSST 883
Query: 119 LGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENL 177
L N P +++ R L + +++ Y PW+ + + E ++
Sbjct: 884 LFENRPSLRPPYSLRVRGLAEETGLPLFEHRLMAPAAYPPPWQWQLIDCDVSFMEVTKHA 943
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELL 237
++ F + + + F YTD SK+ + A + + S L+ S+F++E
Sbjct: 944 PIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAAVGPSFSAAGALHPNTSIFTAEAY 1002
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL 297
AI + HI + + I+ TDS S + ALK + N+ILV + L
Sbjct: 1003 AILAAVKHIRELKLQKAVIY-------TDSLSVVKALKTLKKHK---NSILVSLYSLVCT 1052
Query: 298 NITVK----FLWIPSHLGIAGNVQVDELAKNSQN--APLLSMMTSEDLKSAIKKKLLSEW 351
T K W+P H I GNV D LA ++ + A + + DLK +K+KL + W
Sbjct: 1053 VYTAKQHVVVCWVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKRKLRAYW 1112
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL 411
W +NKL IK W K R E+ + RLR GH+H TH +LL D P
Sbjct: 1113 QSTWDQQT-HNKLHVIKPQLGHW-PPISKSRYTEVTLTRLRTGHTHSTHAYLLSGGDAPF 1170
Query: 412 CEWCNVQLSIQHILLECRKFRASRNK 437
C+ C L++ HIL++CR A R K
Sbjct: 1171 CDKCGEPLTVIHILIQCRGLDAIRKK 1196
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 471 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
Y PW+ + + E ++ ++ F + + + F YTD SK+ + A
Sbjct: 921 YPPPWQWQLIDCDVSFMEVTKHAPIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAA 979
Query: 531 ITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL 590
+ + S L+ S+F++E AI + HI + I+ TDS S + AL
Sbjct: 980 VGPSFSAAGALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIY-------TDSLSVVKAL 1032
Query: 591 KNIMSPNHLVNNILVKINELKILNITVK----FLWIPSHLGIAGNVQVPFL 637
K + N+ILV + L T K W+P H I GNV L
Sbjct: 1033 KTLKKHK---NSILVSLYSLVCTVYTAKQHVVVCWVPGHREIQGNVMADHL 1080
>gi|427798885|gb|JAA64894.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 220/446 (49%), Gaps = 23/446 (5%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ TWG + CL+ L+ + +R +DYGA+IY SA+ ++L L+ ++H
Sbjct: 764 KCLKTMNILKVLSRTTWGSDKKCLMNLYKSLIRTCLDYGAIIYQSASPTALKMLDPIHHL 823
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV---KCNPSNPVSLILTHAQ 118
+R+ +GA+ TSP+ESLY E+ + L+ +R + Y +V K +PS+ L+ +
Sbjct: 824 GIRLSTGAFCTSPVESLYVESNEWSLQLQRSYMSFLYYLKVNADKEHPSHSTINDLSSST 883
Query: 119 LGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENL 177
L N P +++ R L + +++ Y PW+ + + E ++
Sbjct: 884 LFENRPSLRPPYSLRVRGLAEETGLPLFEHRLMAPAAYPPPWQWQLIDCDVSFMEVTKHA 943
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELL 237
++ F + + + F YTD SK+ + A + + S L+ S+F++E
Sbjct: 944 PIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAAVGPSFSDAGVLHPNTSIFTAEAY 1002
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL 297
AI + HI + + I+ TDS S + ALK + N+ILV + L
Sbjct: 1003 AILAAVKHIRELKLQKAVIY-------TDSLSVVKALKTLKKHK---NSILVSLYSLVCT 1052
Query: 298 NITVK----FLWIPSHLGIAGNVQVDELAKNSQN--APLLSMMTSEDLKSAIKKKLLSEW 351
T K W+P H I GNV D LA ++ + A + + DLK +K+KL + W
Sbjct: 1053 LYTAKQHVVVCWVPGHREIQGNVMADHLAASTHDCSANTSIAIPALDLKPLLKRKLRAYW 1112
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL 411
W +NKL IK W K R E+ + RLR GH+H TH +LL D P
Sbjct: 1113 QSTWDQQT-HNKLHVIKPQLGHW-PPISKSRYTEVTLTRLRTGHTHSTHAYLLSGGDAPF 1170
Query: 412 CEWCNVQLSIQHILLECRKFRASRNK 437
C+ C L++ HIL++CR A R K
Sbjct: 1171 CDKCGEPLTVIHILIQCRGLDAIRKK 1196
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 471 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
Y PW+ + + E ++ ++ F + + + F YTD SK+ + A
Sbjct: 921 YPPPWQWQLIDCDVSFMEVTKHAPIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAA 979
Query: 531 ITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL 590
+ + S L+ S+F++E AI + HI + I+ TDS S + AL
Sbjct: 980 VGPSFSDAGVLHPNTSIFTAEAYAILAAVKHIRELKLQKAVIY-------TDSLSVVKAL 1032
Query: 591 KNIMSPNHLVNNILVKINELKILNITVK----FLWIPSHLGIAGNVQVPFL 637
K + N+ILV + L T K W+P H I GNV L
Sbjct: 1033 KTLKKHK---NSILVSLYSLVCTLYTAKQHVVVCWVPGHREIQGNVMADHL 1080
>gi|427798889|gb|JAA64896.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1199
Score = 198 bits (504), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/446 (30%), Positives = 221/446 (49%), Gaps = 23/446 (5%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ TWG + CL+ L+ + +R +DYGA+IY SA+ ++L L+ V+H
Sbjct: 764 KCLKTMNILKVLSRTTWGSDKKCLMNLYKSLIRTRLDYGAIIYQSASPTALKMLDPVHHL 823
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV---KCNPSNPVSLILTHAQ 118
+R+ +GA+RTSP+ESLY E+ + L +R + Y +V K +PS+ L+ +
Sbjct: 824 GIRLSTGAFRTSPVESLYVESNEWSLHLQRSYMSFLYYIKVNADKEHPSHSTINDLSCST 883
Query: 119 LGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENL 177
L N P +++ R L + +++ Y PW+ + + E ++
Sbjct: 884 LFENRPSLKPPYSLRVRDLAEQTGLPLFEHRLMAPAAYPPPWQWQLIDCDVSFMEVTKHA 943
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELL 237
++ F + + + F YTD SK+ + A + + S L+ S+F++E
Sbjct: 944 PIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAAVGPSFSAAGALHPNTSIFTAEAY 1002
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL 297
AI + HI + + I+ TDS S + ALK + N +LV + L
Sbjct: 1003 AILAAVKHIRELKLQKAVIY-------TDSLSVVKALKTLKKHR---NPVLVSLYSLLCT 1052
Query: 298 NITVK----FLWIPSHLGIAGNVQVDELAKNSQNAPLLS--MMTSEDLKSAIKKKLLSEW 351
T K W+P H I GNV D+LA ++ ++ + + + DLK +K+K+ + W
Sbjct: 1053 IYTSKQHVVVCWVPGHREIQGNVMADQLAVSAHDSSANTSIAIPALDLKPYLKRKIRAYW 1112
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL 411
W +NKL IK W K R E+ + RLR GH+H TH +LL D P
Sbjct: 1113 QSTWDRQT-HNKLHVIKPQLGHW-PPISKSRYTEVTLTRLRTGHTHSTHAYLLSGGDAPF 1170
Query: 412 CEWCNVQLSIQHILLECRKFRASRNK 437
C+ C L++ HIL++CR A R K
Sbjct: 1171 CDKCGEPLTVIHILIQCRGLDAIRKK 1196
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 15/173 (8%)
Query: 471 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
Y PW+ + + E ++ ++ F + + + F YTD SK+ + A
Sbjct: 921 YPPPWQWQLIDCDVSFMEVTKHAPIAHIRTYFLELQHKYNCPAF-YTDASKSHTSVSYAA 979
Query: 531 ITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL 590
+ + S L+ S+F++E AI + HI + I+ TDS S + AL
Sbjct: 980 VGPSFSAAGALHPNTSIFTAEAYAILAAVKHIRELKLQKAVIY-------TDSLSVVKAL 1032
Query: 591 KNIMSPNHLVNNILVKINELKILNITVK----FLWIPSHLGIAGNVQVPFLEI 639
K + N +LV + L T K W+P H I GNV L +
Sbjct: 1033 KTLKKHR---NPVLVSLYSLLCTIYTSKQHVVVCWVPGHREIQGNVMADQLAV 1082
>gi|443693558|gb|ELT94903.1| hypothetical protein CAPTEDRAFT_189741, partial [Capitella teleta]
Length = 502
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 146/285 (51%), Gaps = 18/285 (6%)
Query: 156 IAPWELSVPEIIYLTSE-KKENLSSVAVKNAFF----QFKGENQNSLFCYTDGSKTAANS 210
+ PW+L PE+ S+ K+ ++ +K F+ ++ G N YTDGSK+
Sbjct: 41 VPPWKLRPPEVDTSISKFLKDQHPALFLKQEFYNLIDKYPGIN-----IYTDGSKSNNAV 95
Query: 211 GCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270
CA+ T F L + S++++EL+AI L I + D IC+DS SS
Sbjct: 96 ACAFTCSTYQIQFGLPTQMSIYTAELIAIEQALIFIETVKDE------DQFNICSDSLSS 149
Query: 271 LLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL 330
L AL N + + +IL K N L V F+W PSH+GI GN D LAK + P+
Sbjct: 150 LTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGNEVADRLAKQALVMPV 209
Query: 331 LSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVIC 389
+ + D KS I+ + S W W +NKL I+ WK DRR EIV+
Sbjct: 210 TKLPLPHTDYKSPIRSYVKSLWQNEWDEET-DNKLHSIQPVISEWKQGPQIDRRGEIVLA 268
Query: 390 RLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRAS 434
R RIGHSHLTH +LL+RE P C C L+++HIL++C F+ S
Sbjct: 269 RARIGHSHLTHGYLLRREVAPFCIPCQSLLTVKHILIDCIDFKMS 313
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 472 IAPWELSVPEIIYLTSE-KKENLSSVAVKNAFF----QFKGENQNSLFCYTDGSKTAANS 526
+ PW+L PE+ S+ K+ ++ +K F+ ++ G N YTDGSK+
Sbjct: 41 VPPWKLRPPEVDTSISKFLKDQHPALFLKQEFYNLIDKYPGIN-----IYTDGSKSNNAV 95
Query: 527 GCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
CA+ T F L + S++++EL+AI L I + D IC+DS SS
Sbjct: 96 ACAFTCSTYQIQFGLPTQMSIYTAELIAIEQALIFIETVKDE------DQFNICSDSLSS 149
Query: 587 LLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L AL N + + +IL K N L V F+W PSH+GI GN
Sbjct: 150 LTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGN 194
>gi|443710566|gb|ELU04776.1| hypothetical protein CAPTEDRAFT_186063 [Capitella teleta]
Length = 377
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 117/377 (31%), Positives = 184/377 (48%), Gaps = 14/377 (3%)
Query: 18 WGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIES 77
WG R L RLF + +R +DYGA++YGSA S L +L + + A R+ GA+R SP+ S
Sbjct: 3 WGADREVLFRLFRSLLRSRLDYGAIVYGSARISYLERLKPIQNQAFRLCLGAFRISPVTS 62
Query: 78 LYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR-NINRANLPRTVKSRL 136
L+ E + P+ R+K+L + RV + +NP + + R +++ N R + R+
Sbjct: 63 LHTEANEMPMAIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRI 122
Query: 137 -EDLQ-IFDRISAQVIKRDEYIAPWELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGE 192
EDLQ I I A + I W L PE I + KK + +KN F+ +
Sbjct: 123 KEDLQTICPDIKAITPNQLFNIPYWLLRPPELDISLIHFGKKTANPNYTLKNEFYNLMDK 182
Query: 193 NQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRS 251
+ +TDGSK+ + C + S +L + S+FS+ELLAI+ +L+ + C+
Sbjct: 183 YPDHKVIFTDGSKSDSAVACFATADNLSIQIRLPDSASIFSAELLAIYQVLTLLECSAND 242
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+ +++ I TDS SSL A+ N + V IL K L I + W PSH+G
Sbjct: 243 QQQFL------IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVG 296
Query: 312 IAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKED 370
+ GN + D LAK + + ++ + S D K + +W W + NKL I+
Sbjct: 297 VMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWSSEQ-ENKLYCIQPT 355
Query: 371 TLLWKSSFDKDRRKEIV 387
W S + RRK +
Sbjct: 356 LGKWAKSSREIRRKPLT 372
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 472 IAPWELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCA 529
I W L PE I + KK + +KN F+ + + +TDGSK+ + C
Sbjct: 144 IPYWLLRPPELDISLIHFGKKTANPNYTLKNEFYNLMDKYPDHKVIFTDGSKSDSAVACF 203
Query: 530 YITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLA 589
+ S +L + S+FS+ELLAI+ +L+ + +++ + I TDS SSL A
Sbjct: 204 ATADNLSIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQ-----QFLIATDSLSSLQA 258
Query: 590 LKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL 637
+ N + V IL K L I + W PSH+G+ GN + L
Sbjct: 259 IGNFNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVGVMGNERADLL 306
>gi|427791981|gb|JAA61442.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1060
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 152/269 (56%), Gaps = 11/269 (4%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+K+ KA+N+LKVL+ K WG R CLL ++ + VR +DYG++IYGSA S L +L+ V++
Sbjct: 785 VKANKALNVLKVLSRKRWGSDRKCLLHIYRSLVRSKLDYGSIIYGSARDSYLKRLDPVHN 844
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
LR+ +GAYRTSPI SLYAE+ +P LE RR L+ Y +V+ +P + I+T +
Sbjct: 845 KGLRLATGAYRTSPIPSLYAESNEPSLEYRRTQLMFTYVLKVRSSPDHICYSIVTRSD-- 902
Query: 121 RNINRANLPRTVKS---RLED----LQIFDRISAQVIKRDEYIAPW-ELSVPEIIYLTSE 172
+ ++ AN P +K R E+ L I + + + KR +APW + S+ LT
Sbjct: 903 QRLHYANKPNAIKPLILRFEEKFHALNIPNE-ALSIAKRPRSLAPWSDFSMFLDFSLTHI 961
Query: 173 KKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVF 232
KK+ + F + + YTDGSK +A G + + E +V +L SV+
Sbjct: 962 KKQGTPREHILQEFRTLQEKYHTFNEFYTDGSKASAYVGSSVVGEIYEEVVRLPQFVSVY 1021
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSV 261
++E A+++ + +I N+ + IF DS+
Sbjct: 1022 TAECYALWIAVRNIINSNHKKAVIFSDSL 1050
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 465 VIKRDEYIAPW-ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTA 523
+ KR +APW + S+ LT KK+ + F + + YTDGSK +
Sbjct: 937 IAKRPRSLAPWSDFSMFLDFSLTHIKKQGTPREHILQEFRTLQEKYHTFNEFYTDGSKAS 996
Query: 524 ANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSI 577
A G + + E +V +L SV+++E A+++ + +I +++ + IF DS+
Sbjct: 997 AYVGSSVVGEIYEEVVRLPQFVSVYTAECYALWIAVRNIINSNHKKAVIFSDSL 1050
>gi|443712830|gb|ELU05953.1| hypothetical protein CAPTEDRAFT_202466 [Capitella teleta]
Length = 397
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 128/254 (50%), Gaps = 8/254 (3%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
YTDGSK+ CA+ T F L + S++++EL+AI L I + D
Sbjct: 134 YTDGSKSNDTVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQALIFIETVKDE------D 187
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN D
Sbjct: 188 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVVFIWCPSHVGILGNEVAD 247
Query: 320 ELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
AK + P+ + + D KS I+ + S W W +NKL I+ WK
Sbjct: 248 RQAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDGET-DNKLHIIQPVISEWKQGP 306
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKW 438
DRR EIV+ RIGHSHLTH +LL+RE P C C L+++HIL++C F SR K+
Sbjct: 307 QIDRRGEIVLACARIGHSHLTHGYLLRREVAPFCIPCQSLLTVKHILIDCIDFEISRRKY 366
Query: 439 HLKDDISALLGDDH 452
+ L D H
Sbjct: 367 FNVFSMRQLFEDTH 380
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
YTDGSK+ CA+ T F L + S++++EL+AI L I+ + + E D
Sbjct: 134 YTDGSKSNDTVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQAL--IFIETVKDE----D 187
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN
Sbjct: 188 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKKVVFIWCPSHVGILGN 243
>gi|443695973|gb|ELT96755.1| hypothetical protein CAPTEDRAFT_23017, partial [Capitella teleta]
Length = 261
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 121/230 (52%), Gaps = 8/230 (3%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
YTDGSK+ CA+ T F L + S++++EL+AI L I + D
Sbjct: 39 YTDGSKSNDAVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQALIFIETVKDE------D 92
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN D
Sbjct: 93 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGNEVAD 152
Query: 320 ELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
LAK + P+ + + D KS I+ + S W W +NKL I+ WK
Sbjct: 153 RLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDEET-DNKLHSIQPVISEWKQGP 211
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLEC 428
DRR EIV+ R RIGHSHLTH +LL+RE P C C LS++HIL++C
Sbjct: 212 QIDRRGEIVLARARIGHSHLTHGYLLRREVAPFCIPCQSLLSVKHILIDC 261
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
YTDGSK+ CA+ T F L + S++++EL+AI L I+ + + E D
Sbjct: 39 YTDGSKSNDAVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQAL--IFIETVKDE----D 92
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN
Sbjct: 93 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGN 148
>gi|51950578|gb|AAA70222.2| putative ORF2 [Drosophila melanogaster]
Length = 1219
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/434 (29%), Positives = 212/434 (48%), Gaps = 35/434 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+NI+K L++ + + LL + A + ++YG +YG A +S L+K+ T +++A+R+
Sbjct: 765 LNIIKCLSSLKFNCNTHTLLNVAKATIIAKLEYGLFLYGHAPKSILNKIKTPFNSAIRLA 824
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
GAYR++PI +L E+ PPLE +R + +A + + + P+ L + +
Sbjct: 825 LGAYRSTPINNLLYESNTPPLEMKRDLQIAKLSQNLILSKNTPIHKFLK-PKKANKKKTS 883
Query: 127 NLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEII--YLTSEKKENLSSVAVKN 184
+ RT+K LE + + IK + PW L P +I L KKE S +
Sbjct: 884 TIDRTIKLSLE-----LNLPYKPIKLHKNKPPWTL--PNLIDTSLRIHKKEQTSPDQYRK 936
Query: 185 AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFK---LYNENSVFSSELLAIFM 241
+ K + F +TDGSK N ++ TE+ V K L +SV +SE +AI
Sbjct: 937 LYEHTKNNLKTHNFIFTDGSK--INYTISFAITTETDVLKYGILPPYSSVLTSETIAI-- 992
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITV 301
L I T++R R IC+DS S++ +++N + + + I I + +
Sbjct: 993 -LEAIELTKNR-----RGKFIICSDSLSAVDSIQNTNNNSFYPSRIRSLITQHA---PKI 1043
Query: 302 KFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVIN 361
K +WIP H GI GN D+ AK++ + PL+ +T + IKK L ++ K ++IN
Sbjct: 1044 KIMWIPGHSGIKGNELADQAAKSASSMPLI--LTPNINTTDIKKHLKADLATKQKEHIIN 1101
Query: 362 NK--LRRIKEDT-----LLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEW 414
+ I +T L +S + R +I I RLR+GH+++TH L P C +
Sbjct: 1102 CSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKIIRLRLGHTNITHQHYLNPNSIPTCPF 1161
Query: 415 CNVQLSIQHILLEC 428
C +S+ HI C
Sbjct: 1162 CQGDISLNHIFNSC 1175
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 466 IKRDEYIAPWELSVPEII--YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTA 523
IK + PW L P +I L KKE S + + K + F +TDGSK
Sbjct: 902 IKLHKNKPPWTL--PNLIDTSLRIHKKEQTSPDQYRKLYEHTKNNLKTHNFIFTDGSK-- 957
Query: 524 ANSGCAYITETESQVFK---LYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580
N ++ TE+ V K L +SV +SE +AI L I T +R R IC
Sbjct: 958 INYTISFAITTETDVLKYGILPPYSSVLTSETIAI---LEAIELTKNR-----RGKFIIC 1009
Query: 581 TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+DS S++ +++N + + + I I + +K +WIP H GI GN
Sbjct: 1010 SDSLSAVDSIQNTNNNSFYPSRIRSLITQHAP---KIKIMWIPGHSGIKGN 1057
>gi|443724607|gb|ELU12531.1| hypothetical protein CAPTEDRAFT_208903 [Capitella teleta]
Length = 397
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 127/254 (50%), Gaps = 8/254 (3%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
YTDGSK+ CA+ T F L + S++++EL+AI L I + D
Sbjct: 134 YTDGSKSNDAVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQALIFIETMKDE------D 187
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN D
Sbjct: 188 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGNEVAD 247
Query: 320 ELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
LAK + P+ + + D KS I+ + S W +NKL I+ WK
Sbjct: 248 RLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLRQNEWDEET-DNKLHTIQPVISEWKQGP 306
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKW 438
DRR EIV+ IGHSHLTH +LL+RE P C C L+++HIL++C F SR K+
Sbjct: 307 QIDRRGEIVLACACIGHSHLTHGYLLRREVAPFCIPCQSLLTVKHILIDCIDFEISRRKY 366
Query: 439 HLKDDISALLGDDH 452
+ L D H
Sbjct: 367 FNVSSMRQLFEDTH 380
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 62/116 (53%), Gaps = 6/116 (5%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
YTDGSK+ CA+ T F L + S++++EL+AI L I+ + + E D
Sbjct: 134 YTDGSKSNDAVACAFTCSTYQIQFGLPAQMSIYTAELIAIEQAL--IFIETMKDE----D 187
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
IC+DS SSL AL N + + +IL K N L V F+W PSH+GI GN
Sbjct: 188 QFNICSDSLSSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGN 243
>gi|950316|gb|AAA74495.1| unknown protein [Drosophila teissieri]
Length = 1234
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 209/434 (48%), Gaps = 35/434 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+NI+K L++ + + LL + A V ++YG +YG A +S L+KL T +++A+R+
Sbjct: 763 LNIIKCLSSPKFNCNTLSLLNVAKATVIAKLEYGLFLYGHAPKSILNKLKTPFNSAIRLA 822
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
GAYR++PI +L E+ P LE +R + +A + + P+ + H + + +
Sbjct: 823 LGAYRSTPINNLLYESNIPSLEMKRDLQIAKLSQNLSFCKNRPIHKFVRHKKYKKKT-LS 881
Query: 127 NLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEII--YLTSEKKENLSSVAVKN 184
+ +T+K LE + + IK +Y W+L P +I L KK+ S + +
Sbjct: 882 IIDQTIKLSLE-----LNLPYKPIKLHKYKPSWDL--PNLIDTSLRGHKKQETSPESYRK 934
Query: 185 AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFK---LYNENSVFSSELLAIFM 241
F K + + F +TDGSK N + T++ + K L +SV +SE +AI
Sbjct: 935 LFEHTKNKLKPHSFIFTDGSK--INCIITFAITTDTNILKQGILPPYSSVLTSETIAILE 992
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITV 301
+ + TR R I DS S++ ++KN + + N I I +L +
Sbjct: 993 AIE-LIKTR-------RGKFGIWFDSLSAIDSIKNPNNNSFYPNRIRSLITQLA---PKI 1041
Query: 302 KFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVIN 361
K +WIP H GI GN D+ AK + N PL+ +T + IK+ L +E K N+IN
Sbjct: 1042 KIMWIPGHSGIIGNELADQAAKLASNMPLI--VTPNINNTDIKRHLKAELATKQKENIIN 1099
Query: 362 -----NKLRRIKEDT--LLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEW 414
L T L ++ + R +I I RLR+GH+++TH L +C +
Sbjct: 1100 CNQWYQSLNTNNTHTCDYLKQTHQNWTRLDQIKIIRLRLGHTNITHQHYLNPNPITVCPF 1159
Query: 415 CNVQLSIQHILLEC 428
C LSI HIL C
Sbjct: 1160 CQGDLSISHILNSC 1173
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 466 IKRDEYIAPWELSVPEII--YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTA 523
IK +Y W+L P +I L KK+ S + + F K + + F +TDGSK
Sbjct: 900 IKLHKYKPSWDL--PNLIDTSLRGHKKQETSPESYRKLFEHTKNKLKPHSFIFTDGSK-- 955
Query: 524 ANSGCAYITETESQVFK---LYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580
N + T++ + K L +SV +SE +AI + I + R I
Sbjct: 956 INCIITFAITTDTNILKQGILPPYSSVLTSETIAILEAIELIKTR--------RGKFGIW 1007
Query: 581 TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
DS S++ ++KN + + N I I +L +K +WIP H GI GN
Sbjct: 1008 FDSLSAIDSIKNPNNNSFYPNRIRSLITQLAP---KIKIMWIPGHSGIIGN 1055
>gi|443721618|gb|ELU10867.1| hypothetical protein CAPTEDRAFT_200496, partial [Capitella teleta]
Length = 471
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 136/257 (52%), Gaps = 9/257 (3%)
Query: 177 LSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSEL 236
+S++ +++ F +S YTDGSK+ + C++ + KL + SVF+SE+
Sbjct: 1 MSALTIRSEFADALDRYPDSTVFYTDGSKSEDSVACSFFSSRLKLKMKLPVQMSVFTSEI 60
Query: 237 LAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKI 296
+AI L + + +++ IC+DS S+++A+ + + V +L I +
Sbjct: 61 IAILSALRCVEADNEQHQFV------ICSDSLSAIMAIHGMDVRHPYVLQVLYAIKSISQ 114
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMT--SEDLKSAIKKKLLSEWHLH 354
V F+W PSH+GI GN D LAK + ++ L+ + + DL+ IKK + S W
Sbjct: 115 QEKIVVFMWCPSHVGIPGNEMADTLAKEALSSTNLAELPVPASDLRCLIKKYIRSRWQHE 174
Query: 355 WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEW 414
W + +NKL I W + RR+EIV+ R+RIGH+H TH+++ + +D C
Sbjct: 175 W-DEQHSNKLHSIHPTIGPWPPCQREKRREEIVLARIRIGHTHYTHDYIPRGDDQTECVA 233
Query: 415 CNVQLSIQHILLECRKF 431
C L++QHI++EC F
Sbjct: 234 CVCPLTVQHIIIECADF 250
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 6/139 (4%)
Query: 493 LSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSEL 552
+S++ +++ F +S YTDGSK+ + C++ + KL + SVF+SE+
Sbjct: 1 MSALTIRSEFADALDRYPDSTVFYTDGSKSEDSVACSFFSSRLKLKMKLPVQMSVFTSEI 60
Query: 553 LAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKI 612
+AI L + + + + +++ IC+DS S+++A+ + + V +L I +
Sbjct: 61 IAILSALRCVEADNEQHQFV------ICSDSLSAIMAIHGMDVRHPYVLQVLYAIKSISQ 114
Query: 613 LNITVKFLWIPSHLGIAGN 631
V F+W PSH+GI GN
Sbjct: 115 QEKIVVFMWCPSHVGIPGN 133
>gi|6635955|gb|AAF20019.1|AF134900_2 pol-like protein [Aedes aegypti]
Length = 1208
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 117/455 (25%), Positives = 212/455 (46%), Gaps = 51/455 (11%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
IN+L+ L+ +R L+R+ + + + YG ++G A + +++L Y+ ++RII
Sbjct: 775 INLLRTLSKPHKSSNRDILVRIAKSIINSRLFYGIELFGLAGDTLITRLAPTYNQSIRII 834
Query: 67 SGAYRTSPIESLYAENGQPPL--ETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNIN 124
+G ++P ++ E G P + + K + V L+ R N
Sbjct: 835 AGLLPSTPADAACVELGVLPFRYQATETLCCRTIAYLEKTTGDHEVFLL-------REGN 887
Query: 125 RANLPRTVKSRLEDLQIFDRISAQ---VIKRDEYIAPWELSVPEIIYLTSEKKE---NLS 178
RA D ++ Q +++ ++ P+ + TS K +
Sbjct: 888 RA---------------LDSLAHQELPPVEQVHWVGARRWDAPDFLVDTSVSKRFRAGDN 932
Query: 179 SVAVKNAFFQF-KGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELL 237
S A+++ + + +N +TDGSK +G +S ++L ++ SVFS+E
Sbjct: 933 SPAMRSHVTELLASKYRNYHHRFTDGSKYLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAA 992
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL 297
AI + +T P+ + + +DS +S+LA N S H + K + + +
Sbjct: 993 AILL-----ASTTPAPK-----PICVISDS-ASVLATINSSSTRHPWIQAVQKNSPSQTV 1041
Query: 298 NITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSE-DLKSAIKKKLLSEWHLHWK 356
FLW+P H GI GNV+ D LA ++ L + +T DLK+ K ++ S W L W
Sbjct: 1042 -----FLWVPGHCGIRGNVEADHLASKGRSGRLFTRLTPGMDLKNWTKSQIRSSWALEWV 1096
Query: 357 NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCN 416
N + + +R+IK +T W + +RR + V+ RLR GH+H THN +R C CN
Sbjct: 1097 N-LRDKFIRKIKGETKRWIDT--NNRRDQQVLSRLRTGHTHATHNMGNERPFRKKCIVCN 1153
Query: 417 VQLSIQHILLECRKFRASRNKWHLKDDISALLGDD 451
+S++H+++ C F+A R + ++ D I L ++
Sbjct: 1154 TTMSVEHMIINCPCFQAPRERHNIPDSIRDALSNE 1188
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 16/122 (13%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
+TDGSK +G +S ++L ++ SVFS+E AI + ST+ +
Sbjct: 955 FTDGSKYLDRTGFGVTDIDKSYFYRLPDQCSVFSAEAAAILLA-----STTPAPK----- 1004
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVP 635
I + +DS +S+LA N S H + K + + + FLW+P H GI GNV+
Sbjct: 1005 PICVISDS-ASVLATINSSSTRHPWIQAVQKNSPSQTV-----FLWVPGHCGIRGNVEAD 1058
Query: 636 FL 637
L
Sbjct: 1059 HL 1060
>gi|11323019|emb|CAC16871.1| pol [Drosophila melanogaster]
Length = 1227
Score = 132 bits (331), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 120/442 (27%), Positives = 200/442 (45%), Gaps = 36/442 (8%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
NI+K L++K + L+ + A + +DYG I+G +S L KL YH A+R
Sbjct: 775 NIIKFLSSKYSYIHIKTLIDITRALMLSKIDYGLPIFGWCAKSHLKKLQVPYHGAVRRAI 834
Query: 68 GAYRTSPIESLYAENGQPPLETRRK----ILLANYGTRVKCNPSNPVSLILTHAQLGRNI 123
A+ TSP+ AE+G P +++R + +L+ T C + I + + I
Sbjct: 835 HAFPTSPVACTLAESGLPSIQSRVEETTLMLIPKLYTTSNCLLTKDFGAIFKQKRKFKCI 894
Query: 124 NRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEI-IYLTSEKKENLSSVAV 182
+ T++ +++ D + + + A W P I + + + K++ +
Sbjct: 895 S------TLRRCANYIKLLDLPLPKPRRPFKSPALWGSKQPNINLQIYNAAKKDTGRLEY 948
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVF--KLYNENSVFSSELLAIF 240
+ F + + + YTDGSK + A + + +L + NS+F++E AI
Sbjct: 949 QKRFMSAQEDLGVKNWIYTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAIL 1008
Query: 241 MLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 300
C S+ ICTDS SSL A++N NH + L
Sbjct: 1009 ----KACQFASKNA----GKSVICTDSLSSLSAIRNW---NHNDPTTQEVRHILSSHPKK 1057
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNSQNAP--LLSMMTSEDLKSAI----KKKLLSEWHLH 354
+ LW+PSH GI GN D+ A+ + P L + S+DLKS I K+K LSEW L
Sbjct: 1058 ITLLWVPSHQGIHGNELADKAAQEMRLTPSILFTPFNSKDLKSRIKLYLKEKKLSEWAL- 1116
Query: 355 WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEW 414
++ + I + +++K + +R+ RLRIGH+ TH LL R P C+
Sbjct: 1117 -----FMHRYQSINPNCIMFKPPTNVHKRECATFIRLRIGHTQSTHQHLLMRSARPTCQL 1171
Query: 415 CNVQLSIQHILLECRKFRASRN 436
C +L++ HIL C + + R+
Sbjct: 1172 CGDELTVDHILNACSQLHSIRS 1193
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 516 YTDGSKTAANSGCAYITETESQVF--KLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGSK + A + + +L + NS+F++E AI + ++
Sbjct: 966 YTDGSKVTGATTFAVVDSNRKIIAGGRLPSYNSIFTAEAFAILKACQFASKNAGKS---- 1021
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
ICTDS SSL A++N NH + L + LW+PSH GI GN
Sbjct: 1022 ----VICTDSLSSLSAIRNW---NHNDPTTQEVRHILSSHPKKITLLWVPSHQGIHGN 1072
>gi|427792011|gb|JAA61457.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1121
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/376 (26%), Positives = 177/376 (47%), Gaps = 24/376 (6%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+K L+ +N+LK+L+ +WG + CL+ LF + ++ ++YG ++Y SA+++++ L+ VYH
Sbjct: 757 LKCLQTMNLLKLLSRPSWGTDKKCLMSLFNSLIKSRLNYGCIVYQSASKTAVKMLDPVYH 816
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
+R+ +GA+RTSP+ SLY E + P++ R+ Y +V P++P + ++
Sbjct: 817 LGIRLATGAFRTSPVSSLYVEANEWPMQLEREYCTLMYTLKVTSIPTHPCAKLVADTSAL 876
Query: 121 RNIN-RANLPRTVKSRLEDLQIFDRISAQVIKRD---EYIAPWELS-VPEIIYLTSEKKE 175
R R +L + I Q + + E++ PWE + + + K+
Sbjct: 877 RFFEKRPSLSKPFSLTCTATAAQAEIPLQQVAKAPSMEWLPPWEKTRIKCDMSFCHIDKQ 936
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
A++ F + + + YTD SKT + A + + +L S+F++E
Sbjct: 937 RHPRAAIQQHFLSLQYKYRGCHQFYTDASKTRDSVSAAAVGPEFTTSERLNVHTSIFTAE 996
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELK 295
AI + + +I N IF TDS S + AL + PN N +L + E +
Sbjct: 997 AYAILIAIKYILNHNITKSVIF-------TDSLSVVRAL-HTGKPNK--NPVLCDV-EKQ 1045
Query: 296 ILNI-----TVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM--MTSEDLKSAIKKKLL 348
+ N + W+P H GI GN + D A + L + + +DLK+ + + L
Sbjct: 1046 LTNAYRNTSEITVCWVPGHAGIDGNERADACAAVAAQKSNLDVNSVPYQDLKALVHRNLR 1105
Query: 349 SEWHLHWKNNVINNKL 364
W W NNKL
Sbjct: 1106 ERWQKEWDLET-NNKL 1120
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 17/168 (10%)
Query: 470 EYIAPWELS-VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGC 528
E++ PWE + + + K+ A++ F + + + YTD SKT +
Sbjct: 914 EWLPPWEKTRIKCDMSFCHIDKQRHPRAAIQQHFLSLQYKYRGCHQFYTDASKTRDSVSA 973
Query: 529 AYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL 588
A + + +L S+F++E AI + + +I + + IF DS+ S++
Sbjct: 974 AAVGPEFTTSERLNVHTSIFTAEAYAILIAIKYILNHNITKSVIFTDSL--------SVV 1025
Query: 589 ALKNIMSPNHLVNNILVKINELKILNI-----TVKFLWIPSHLGIAGN 631
+ PN N +L + E ++ N + W+P H GI GN
Sbjct: 1026 RALHTGKPNK--NPVLCDV-EKQLTNAYRNTSEITVCWVPGHAGIDGN 1070
>gi|427791645|gb|JAA61274.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 160/329 (48%), Gaps = 19/329 (5%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ TWG + CLL L+ + +R +DYGA++Y SA S+L L+ V+H
Sbjct: 574 KCLKTMNILKVLSRTTWGSDKKCLLNLYKSLIRTRLDYGAIVYQSAAPSALKMLDPVHHL 633
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI---LTHAQ 118
+R+ +GA+RTSP+ESLY E+ + L +R + Y +V + +P L+ +
Sbjct: 634 GIRLSTGAFRTSPVESLYVESNEWSLHLQRCYMSFVYYLKVNADREHPFHATINDLSSST 693
Query: 119 LGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENL 177
L N P +++ R L + + +++ Y+ PW+ + + E ++
Sbjct: 694 LFDNRPSLRQPYSLRVRGLAEETDVPLVEHRLMAPAAYLPPWQWQLIDCDVSFVEVTKHA 753
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELL 237
++ F + + + F +TD SKT + A + + S V L+ S+F++E
Sbjct: 754 PIAHIRTHFLELQHKYSCPEF-FTDASKTHTSVSYAAVGPSFSDVGVLHKNTSIFTAEAY 812
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL 297
AI HI + I+ TDS S + ALK + N +LV + +
Sbjct: 813 AILAAAKHIKQLKLPKAVIY-------TDSLSVVKALKTMKKHK---NPVLVSLYTILCT 862
Query: 298 NITVK----FLWIPSHLGIAGNVQVDELA 322
+ VK W+P H I GN+ DELA
Sbjct: 863 SYAVKQRVVVCWVPGHREIPGNMLADELA 891
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 15/177 (8%)
Query: 460 IISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDG 519
++ +++ Y+ PW+ + + E ++ ++ F + + + F +TD
Sbjct: 720 LVEHRLMAPAAYLPPWQWQLIDCDVSFVEVTKHAPIAHIRTHFLELQHKYSCPEF-FTDA 778
Query: 520 SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFI 579
SKT + A + + S V L+ S+F++E AI HI I+
Sbjct: 779 SKTHTSVSYAAVGPSFSDVGVLHKNTSIFTAEAYAILAAAKHIKQLKLPKAVIY------ 832
Query: 580 CTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK----FLWIPSHLGIAGNV 632
TDS S + ALK + N +LV + + + VK W+P H I GN+
Sbjct: 833 -TDSLSVVKALKTMKKHK---NPVLVSLYTILCTSYAVKQRVVVCWVPGHREIPGNM 885
>gi|328720146|ref|XP_003246964.1| PREDICTED: hypothetical protein LOC100568990, partial
[Acyrthosiphon pisum]
Length = 164
Score = 125 bits (314), Expect = 7e-26, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 98/166 (59%), Gaps = 6/166 (3%)
Query: 297 LNITVKFLWIPSHLGIAGNVQVD---ELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHL 353
+ + + ++W P H GI GN + D A +S + PLL++ T ED K IK+ L +W +
Sbjct: 1 MGMDICYMWAPGHCGIQGNEKADLEASKAASSPDTPLLNIYTYEDKKKQIKQVLDQKWLI 60
Query: 354 HWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCE 413
W N + KL +IK + WK+ +R++E ++ RLRIGH+ +TH L+++ DPP+CE
Sbjct: 61 QWINQ--HTKLNQIKNNIQTWKNP-GLNRKEETILNRLRIGHTFITHRHLMEKNDPPICE 117
Query: 414 WCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYKCI 459
C V L+++HI+ ECRK+ R K+++ I LG D I I
Sbjct: 118 MCGVDLTVKHIITECRKYDDMRKKYNISQQIGEALGPDTQSIRNII 163
>gi|328697220|ref|XP_001949504.2| PREDICTED: hypothetical protein LOC100162931 [Acyrthosiphon pisum]
Length = 1915
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/389 (27%), Positives = 177/389 (45%), Gaps = 33/389 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+NI+K L + +W LL++ AF+ +DYGA I+ SA + L L T++++ +R+
Sbjct: 783 LNIIKTLGHTSWEAKSQTLLKIHEAFILSKLDYGAPIFSSAKHTKLKILETIHNSGIRLS 842
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
GA+R+SPI+S+ G P LE R + R+ +P N + H + N
Sbjct: 843 IGAFRSSPIKSILNIAGIPSLEVRWREQTHKLAARISRSPQNHIH----HPKHTFN---- 894
Query: 127 NLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAF 186
+K LE++ +++ PW+ S+ I L K + KNAF
Sbjct: 895 --HTFIKYDLENIIPYEK---------PLCPPWQFSMNINIDLHQFPKNSTCPHIFKNAF 943
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
YTD S G A I + + +KL ++ S++++E LAI +
Sbjct: 944 RDICSHTHPQTHIYTDASIIEGRVGMAIICDETTIQWKLSDKCSIYTAETLAILKAIEFT 1003
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWI 306
+ I ++ I +DS S+L +L+N+ SP+ +V I K + + + W+
Sbjct: 1004 ISE------INDSNITIFSDSLSALTSLQNLYSPSDIVRKIQNTHYIPKQQDKNITYSWV 1057
Query: 307 PSHLGIAGNVQVD---ELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNK 363
P H I GN D +LA +S N+ L + + D+K I+K L W N ++ K
Sbjct: 1058 PGHCNIDGNELADSAAKLAHSSPNSLSLPIFSFNDIKRVIEKDTLLHCQKEW--NEMSTK 1115
Query: 364 LRRIKEDTL---LWKSSFDKDRRKEIVIC 389
L IK TL + K S +D K +C
Sbjct: 1116 LNEIKRSTLPSSIRKPSVIEDSAKLTKLC 1144
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
PW+ S+ I L K + KNAF YTD S G A I +
Sbjct: 915 PWQFSMNINIDLHQFPKNSTCPHIFKNAFRDICSHTHPQTHIYTDASIIEGRVGMAIICD 974
Query: 534 TESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI 593
+ +KL ++ S++++E LAI + S I +I I +DS S+L +L+N+
Sbjct: 975 ETTIQWKLSDKCSIYTAETLAILKAIEFTISE------INDSNITIFSDSLSALTSLQNL 1028
Query: 594 MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
SP+ +V I K + + + W+P H I GN
Sbjct: 1029 YSPSDIVRKIQNTHYIPKQQDKNITYSWVPGHCNIDGN 1066
>gi|357621647|gb|EHJ73416.1| putative pol-like protein [Danaus plexippus]
Length = 1133
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 130/452 (28%), Positives = 205/452 (45%), Gaps = 36/452 (7%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
INIL+ L+ WG L+ A +R DYG+ + +S+LS L+ + LRII
Sbjct: 668 INILRSLSGVWWGSHPYTQKILYNAIIRSHFDYGSFLLVPCIKSALSILDKIQAKCLRII 727
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
GA ++SPI +L E G+ PL RR+ L + +V ++P+ L N+
Sbjct: 728 CGAMKSSPINALQVECGEAPLHLRRQYLSDRFFLKVIQFSNHPLIPKLNSLSDLIPSNKY 787
Query: 127 NLPRTVKSRLEDLQIFDRISAQVIKRDE---YIAPWEL--SVPEIIYLTSEKKENLSSVA 181
+ L L F R+ V++ + P+++ P+I+ K + A
Sbjct: 788 WSHKEYPCLLTSLVKFLRLPCPVLQNQMFPLFATPYDVLNFHPQILLEFGIDKGS----A 843
Query: 182 VKNAFFQ-FKGENQNSLFC-YTDGSKTA--ANSGCAYITETESQV--FKLYNENSVFSSE 235
+ N FQ + E+ + C YTD SK A +N+G A + + FK +E S+F++E
Sbjct: 844 IANVQFQNYVKEHWSDWLCIYTDASKMADQSNAGAAVWIPKYNIILNFKFPSEISIFTAE 903
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL-KNIMSPNHLVNNILVKINEL 294
+AI +S + + + IF +DSKS L A+ +N H IL KI ++
Sbjct: 904 SIAILEAVSFVESHKLNNSIIF-------SDSKSCLQAIARNPFISKHNYPYIL-KIKDI 955
Query: 295 ----KILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMT--SEDLKSAIKKKLL 348
+ NI V+ WIPSH GI GN VD AK++ N + DL K++
Sbjct: 956 LFRCQSSNIQVRLAWIPSHSGIHGNETVDYYAKDATNTGCMDHFGVYPNDLIPIAKQRFF 1015
Query: 349 SEWHLHWKNNVINNKLRRIKEDTLL----WKSSFDK-DRRKEIVICRLRIGHS-HLTHNF 402
S W +W + +L+ W +F +R +ICRLR+GH+ H
Sbjct: 1016 SSWTQYWLKTSRSKGKYYADVQSLIPFRPWFCNFKNLHKRVSSIICRLRLGHACTPVHLA 1075
Query: 403 LLKREDPPLCEWCNVQLSIQHILLECRKFRAS 434
L+ +D LCE + S HI C + +S
Sbjct: 1076 KLRIKDSSLCECGLDEGSPDHIFFTCPRLSSS 1107
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 19/151 (12%)
Query: 497 AVKNAFFQ-FKGENQNSLFC-YTDGSKTA--ANSGCAYITETESQV--FKLYNENSVFSS 550
A+ N FQ + E+ + C YTD SK A +N+G A + + FK +E S+F++
Sbjct: 843 AIANVQFQNYVKEHWSDWLCIYTDASKMADQSNAGAAVWIPKYNIILNFKFPSEISIFTA 902
Query: 551 ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL-KNIMSPNHLVNNILVKINE 609
E +AI +S + S IF +DSKS L A+ +N H IL KI +
Sbjct: 903 ESIAILEAVSFVESHKLNNSIIF-------SDSKSCLQAIARNPFISKHNYPYIL-KIKD 954
Query: 610 L----KILNITVKFLWIPSHLGIAGNVQVPF 636
+ + NI V+ WIPSH GI GN V +
Sbjct: 955 ILFRCQSSNIQVRLAWIPSHSGIHGNETVDY 985
>gi|443682433|gb|ELT87030.1| hypothetical protein CAPTEDRAFT_222606 [Capitella teleta]
Length = 619
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 9/216 (4%)
Query: 202 DGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSV 261
DGSK+ GCA+ + + L + SV+++EL+AI L+ I + D
Sbjct: 2 DGSKSEDAVGCAFHSRDFNLALGLPCQMSVYTAELIAINETLTSIA-------LLPYDEF 54
Query: 262 FICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDEL 321
ICTDS SS+LA+ +I + V +IL K L + + F+W PSH+GI GN D L
Sbjct: 55 VICTDSFSSILAISSIDLIHSYVQSILQKCTNLAGRDKRIIFIWCPSHVGIPGNETADTL 114
Query: 322 AKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK 380
A+ + +L+ + D K + + ++W + NKL I+ D W +
Sbjct: 115 AQQASGMNILNCPIPHTDFKPITRSFVETQWQSE-SDQETGNKLHDIEPDIGSWPPCQRE 173
Query: 381 DRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCN 416
RR EIVI RLRIGH+ LT++ LL D P+C C+
Sbjct: 174 KRRDEIVIARLRIGHTFLTYSHLLSGNDAPMCYGCD 209
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 7/114 (6%)
Query: 518 DGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSI 577
DGSK+ GCA+ + + L + SV+++EL+AI L+ I + D
Sbjct: 2 DGSKSEDAVGCAFHSRDFNLALGLPCQMSVYTAELIAINETLTSI-------ALLPYDEF 54
Query: 578 FICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
ICTDS SS+LA+ +I + V +IL K L + + F+W PSH+GI GN
Sbjct: 55 VICTDSFSSILAISSIDLIHSYVQSILQKCTNLAGRDKRIIFIWCPSHVGIPGN 108
>gi|242827513|ref|XP_002488845.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218712006|gb|EED11435.1| transposon I factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 1139
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 126/473 (26%), Positives = 210/473 (44%), Gaps = 71/473 (15%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIES 77
L + +L+ A V PI+DY + ++ S + L LNTV + L I A+R++ +
Sbjct: 640 LRPGQMRQLYQACVTPIVDYASTVWHSPPKDKMHLRALNTVQRSTLIRILSAFRSTATAT 699
Query: 78 LYAENGQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRN------INRAN 127
+ E P L R ++ + N T +P+ +L+ A+ R+ R
Sbjct: 700 MEVEMFTLPTRLRLRQRAQLTIINMLT---LPWDHPIQGVLSRARRRRDHAGIGSAPRFP 756
Query: 128 LPRTVKS-RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAF 186
L ++K+ R+E + I + APW+ SV + I +T ++++ A
Sbjct: 757 LAESMKTMRVEQFNGLETIDPKPT------APWKPSVFKEIDITPDREKARKKAAALLV- 809
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYIT--------ETESQVFKLYNENSVFSSELLA 238
S Y+D S ++ G A + + + + S+ ++EL+
Sbjct: 810 -------DPSRVVYSDASGHDSHLGAAAVALDRHQKVVASRTTTIGPMAQWSIHTAELIG 862
Query: 239 IF------MLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVK 290
IF LSH SRP + + I +DSKS+L A++N S ++ I
Sbjct: 863 IFYAISLAFRLSHQNKQPSRPGT--GEMITILSDSKSALQAIRNPSNKSGQRVIQAINQS 920
Query: 291 INELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKK 346
EL I+++ WIP H GN D LAK + + P ++ E K+AI+K+
Sbjct: 921 AYELDSRGISLRLQWIPGHCDDPGNDAADHLAKTAVGLDKTHPFCRPVSRE--KAAIRKQ 978
Query: 347 LLSEWHLHWKNNVINNKLRRIKEDTL-------LWKSSFDKDRRKEIVICRLRIGHSHL- 398
+L EW WK + LRRI + TL L++S R + ++ +LR GHS L
Sbjct: 979 ILKEWEDEWKASRKGAHLRRI-DSTLPSIHTRRLYQSL---PRNRAYLLTQLRTGHSWLA 1034
Query: 399 THN-FLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGD 450
TH FL RED CE C + ++ H+L++C + R K L+ ++ GD
Sbjct: 1035 THGKFLQFRED-DTCE-CGAKETVTHVLIDCPRLATERQK--LRKEVGEAFGD 1083
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 22/173 (12%)
Query: 473 APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
APW+ SV + I +T ++++ A S Y+D S ++ G A +
Sbjct: 781 APWKPSVFKEIDITPDREKARKKAAALLV--------DPSRVVYSDASGHDSHLGAAAVA 832
Query: 533 --------ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFR----DSIFIC 580
+ + + S+ ++EL+ IF +S + S + + R + I I
Sbjct: 833 LDRHQKVVASRTTTIGPMAQWSIHTAELIGIFYAISLAFRLSHQNKQPSRPGTGEMITIL 892
Query: 581 TDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+DSKS+L A++N S ++ I EL I+++ WIP H GN
Sbjct: 893 SDSKSALQAIRNPSNKSGQRVIQAINQSAYELDSRGISLRLQWIPGHCDDPGN 945
>gi|443730613|gb|ELU16038.1| hypothetical protein CAPTEDRAFT_206814 [Capitella teleta]
Length = 233
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 106/240 (44%), Gaps = 39/240 (16%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
YTDGSK+ C +L + S+FS+ELLAI+
Sbjct: 17 YTDGSKSETRVACVATANRLLIQVRLPDSASIFSAELLAIY------------------- 57
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
+L L +P K L + LW PSH+G+ GN + D
Sbjct: 58 ----------EVLTLLECAAPQ--------KYTILYNRGFDLVILWCPSHIGVVGNERAD 99
Query: 320 ELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
LAK + + + + + D S +W W NNKL ++ +S
Sbjct: 100 LLAKEALSFTACDVRIPAFDFNSVAYSFYRDKWQALWSLEQ-NNKLHSVQPIIKKLTNSS 158
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKW 438
+DRRKEIV+ R RIGH+HLTH +LL+RE PP C C L+++HIL+EC F R ++
Sbjct: 159 REDRRKEIVLARARIGHTHLTHGYLLRRELPPFCVHCQCPLTVKHILIECVDFYLHRQRY 218
>gi|443733872|gb|ELU18078.1| hypothetical protein CAPTEDRAFT_197082 [Capitella teleta]
Length = 400
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 116/231 (50%), Gaps = 13/231 (5%)
Query: 202 DGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSV 261
DGSK+ + C+ ++ +L + S+FS+ELLAI+ +L+ S
Sbjct: 13 DGSKSDSAVACS--ATADNLQIRLPDSASIFSAELLAIYKVLT---------LLECSASS 61
Query: 262 FICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDEL 321
TDS SL + N + V IL K L I + W PSH+G+ GN + D L
Sbjct: 62 SSSTDSLLSLQGIGNFNIKHPYVVKILEKCTLLHKKGIDLVMTWCPSHVGVMGNERADLL 121
Query: 322 AKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK 380
AK + + ++ + S D K + +W W + NKL I+ W S +
Sbjct: 122 AKEALSFTTCTIRIPSSDFKPITHEFYKEKWQEQWSSEQ-ENKLYCIQPTLGKWAKSSRE 180
Query: 381 DRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKF 431
RR+EIV+ R RIGHSHLTH +LL+RE PP+C C LSI+HI +EC F
Sbjct: 181 IRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQNILSIKHIFIECVDF 231
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 271 LLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL 330
L+AL N +H + +IL K N L V F+W PS++GI GN D LAK + P+
Sbjct: 238 LIALSNCDITHHYLLSILNKQNNLDRKGKLVVFIWCPSYVGILGNEVADRLAKQALVMPV 297
Query: 331 LSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIK 368
+ + D KS I+ + S W + ++ +NKL I+
Sbjct: 298 TKLPLPHTDYKSPIRSYVKSLWQ-NERDEETDNKLHTIQ 335
>gi|317156327|ref|XP_001825633.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1393
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 62/506 (12%)
Query: 5 KAINILKVLNNKTWGLS--RACLLRLFY-AFVRPIMDYGAVIYGSATQSS--LSKLNTVY 59
+A+N +N GL R +R Y A V PIMDY + ++ + + L L+TV
Sbjct: 886 QAVNRATKVNIALAGLRHLRPGQMRQVYQACVTPIMDYASTVWHNPLKDKRHLRVLDTVQ 945
Query: 60 HTALRIISGAYRTSPIESLYAENGQPP----LETRRKILLANYGTRVKCNPSNPVSLILT 115
+AL I A+RT ++ E P L+ R + ++ N T + +P+ +++
Sbjct: 946 RSALIRILSAFRTVATATVEVETYTLPTHLRLKQRAQRVIVNLCTLPR---DHPIQDVIS 1002
Query: 116 HAQLGRNINRANLPR-----TVKS-RLEDLQIFDRISAQVIKRDEYIAPW------ELSV 163
A+ R+ N + PR ++K+ RLE L + I + + APW E+ +
Sbjct: 1003 RARRRRD-NVGSQPRFPLAESMKTMRLEQLDGLETIDPKPM------APWKPPGFLEIDI 1055
Query: 164 PEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVF 223
+K L + + F G+N N L G+ T + E+
Sbjct: 1056 EPDREKAKDKATALQASSNMVVFSDASGQN-NQL-----GAATVILDHNKDVVESRQLSI 1109
Query: 224 KLYNENSVFSSELLAIFMLLS---HICNTRSR-PEYIFRDSVFICTDSKSSLLALKNI-- 277
SV+++EL+ IF +S I ++R R P ++ I DS S+L A++N
Sbjct: 1110 GSMANWSVYAAELIGIFYAISLVLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGN 1169
Query: 278 MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSM 333
S +++ L ELK I ++ WIP H GN D+LA+ + + P +
Sbjct: 1170 KSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRL 1229
Query: 334 MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRI--KEDTLLWKSSFDK-DRRKEIVICR 390
++ E +++I+K++L EW WK + LRRI K + + +D R + ++ +
Sbjct: 1230 VSQE--RASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYDSLPRNQAYLLTQ 1287
Query: 391 LRIGHSHLTHNFLL--KREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DD 443
LR GH L L RED CE C + ++ H+LL+C K R R K + D
Sbjct: 1288 LRTGHCWLAPYGKLHGHRED-DKCE-CGAKETVTHVLLDCSKLRIPRQKLRRELGEAFGD 1345
Query: 444 ISALLGDDHDEIY-KCIIISAQVIKR 468
I A+LG + + K ++ A+ +R
Sbjct: 1346 IPAMLGGKGETSHVKAVLDFAEASQR 1371
>gi|83774376|dbj|BAE64500.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1292
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 134/506 (26%), Positives = 227/506 (44%), Gaps = 62/506 (12%)
Query: 5 KAINILKVLNNKTWGLS--RACLLRLFY-AFVRPIMDYGAVIYGSATQSS--LSKLNTVY 59
+A+N +N GL R +R Y A V PIMDY + ++ + + L L+TV
Sbjct: 785 QAVNRATKVNIALAGLRHLRPGQMRQVYQACVTPIMDYASTVWHNPLKDKRHLRVLDTVQ 844
Query: 60 HTALRIISGAYRTSPIESLYAENGQPP----LETRRKILLANYGTRVKCNPSNPVSLILT 115
+AL I A+RT ++ E P L+ R + ++ N T + +P+ +++
Sbjct: 845 RSALIRILSAFRTVATATVEVETYTLPTHLRLKQRAQRVIVNLCTLPR---DHPIQDVIS 901
Query: 116 HAQLGRNINRANLPR-----TVKS-RLEDLQIFDRISAQVIKRDEYIAPW------ELSV 163
A+ R+ N + PR ++K+ RLE L + I + + APW E+ +
Sbjct: 902 RARRRRD-NVGSQPRFPLAESMKTMRLEQLDGLETIDPKPM------APWKPPGFLEIDI 954
Query: 164 PEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVF 223
+K L + + F G+N N L G+ T + E+
Sbjct: 955 EPDREKAKDKATALQASSNMVVFSDASGQN-NQL-----GAATVILDHNKDVVESRQLSI 1008
Query: 224 KLYNENSVFSSELLAIFMLLS---HICNTRSR-PEYIFRDSVFICTDSKSSLLALKNI-- 277
SV+++EL+ IF +S I ++R R P ++ I DS S+L A++N
Sbjct: 1009 GSMANWSVYAAELIGIFYAISLVLKIVSSRPRTPTTSQQEPATILCDSMSALQAIRNPGN 1068
Query: 278 MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSM 333
S +++ L ELK I ++ WIP H GN D+LA+ + + P +
Sbjct: 1069 KSGQRIIHANLQAAAELKARGIPLRLQWIPGHCDDPGNDAADKLARMAVGLDKMHPFPRL 1128
Query: 334 MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRI--KEDTLLWKSSFDK-DRRKEIVICR 390
++ E +++I+K++L EW WK + LRRI K + + +D R + ++ +
Sbjct: 1129 VSQE--RASIRKQILKEWEHEWKTCKKGSHLRRIDPKLPAIRTRRLYDSLPRNQAYLLTQ 1186
Query: 391 LRIGHSHLTHNFLL--KREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DD 443
LR GH L L RED CE C + ++ H+LL+C K R R K + D
Sbjct: 1187 LRTGHCWLAPYGKLHGHRED-DKCE-CGAKETVTHVLLDCSKLRIPRQKLRRELGEAFGD 1244
Query: 444 ISALLGDDHDEIY-KCIIISAQVIKR 468
I A+LG + + K ++ A+ +R
Sbjct: 1245 IPAMLGGKGETSHVKAVLDFAEASQR 1270
>gi|134080425|emb|CAK41174.1| unnamed protein product [Aspergillus niger]
Length = 1288
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 120/469 (25%), Positives = 198/469 (42%), Gaps = 71/469 (15%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++DY + ++ + L L TV TAL I A+RT +L E
Sbjct: 794 MRQLYQACVLPVLDYASTVWHKPLRDKIHLRLLETVQRTALIRILSAFRTVSTAALEVEA 853
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHA-----QLGRNINRANLP---- 129
P L+ R +I++A + T +PV +++ A Q+G NRA P
Sbjct: 854 HMLPTHLRLKQRAQIVIARFST---LPEDHPVHDVISRARVRSTQVG---NRARFPLAET 907
Query: 130 -RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQ 188
RT+ L LQ +RI + + APW I + ++++ A NA +
Sbjct: 908 LRTMN--LTRLQALERIDPRPL------APWRAQSFTDIEIEPDREK-----AQTNALAR 954
Query: 189 FKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS--------VFSSELLAIF 240
N + ++D S G A + +Q + S V+++EL+AI+
Sbjct: 955 AATPN---ITVFSDASGKENQLGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIY 1011
Query: 241 M---LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELK 295
L+ + R + I +DS S+L +KN S ++ I EL+
Sbjct: 1012 YAIGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELR 1071
Query: 296 ILNITVKFLWIPSHLGIAGNVQVDELAK----NSQNAPLLSMMTSEDLKSAIKKKLLSEW 351
I ++ W+P H G GN D LAK + P +++ E K I++ + EW
Sbjct: 1072 ARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSRE--KRYIRRNISDEW 1129
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLK 405
H W+ + LRRI D L + + R + ++ +LR GHS L TH
Sbjct: 1130 HQEWRASRNGGHLRRI--DRALPANRTRRLYGSLPRNRAYLLTQLRTGHSWLATHGKQRG 1187
Query: 406 REDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
D CE C ++ H+L++C + R K ++IS +LG
Sbjct: 1188 LRDDEKCE-CGATETVVHVLIDCPRLSGLRQALRRKIGGAFNNISDMLG 1235
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 546 SVFSSELLAIFMLLSHIYSTSS---RTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLV 600
SV+++EL+AI+ + ++ + R+ + I +DS S+L +KN S ++
Sbjct: 1001 SVYAAELMAIYYAIGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 1060
Query: 601 NNILVKINELKILNITVKFLWIPSHLG--------------IAGNVQVPFLEILKSSYKY 646
I EL+ I ++ W+P H G + G + PF +L +Y
Sbjct: 1061 QAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSREKRY 1120
Query: 647 IQSD 650
I+ +
Sbjct: 1121 IRRN 1124
>gi|317033408|ref|XP_001395701.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1618
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 119/467 (25%), Positives = 199/467 (42%), Gaps = 67/467 (14%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++DY + ++ + L L TV TAL I A+RT +L E
Sbjct: 1124 MRQLYQACVLPVLDYASTVWHKPLRDKIHLRLLETVQRTALIRILSAFRTVSTAALEVEA 1183
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHA-----QLGRNINRANLP--RT 131
P L+ R +I++A + T +PV +++ A Q+G NRA P T
Sbjct: 1184 HMLPTHLRLKQRAQIVIARFST---LPEDHPVHDVISRARVRSTQVG---NRARFPLAET 1237
Query: 132 VKS-RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFK 190
+++ L LQ +RI + + APW I + ++++ A NA +
Sbjct: 1238 LRTMNLTRLQALERIDPRPL------APWRAQSFTDIEIEPDREK-----AQTNALARAA 1286
Query: 191 GENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS--------VFSSELLAIFM- 241
N + ++D S G A + +Q + S V+++EL+AI+
Sbjct: 1287 TPN---ITVFSDASGKENQLGAAAVALDHNQRIVGSRQVSIGSMEFWSVYAAELMAIYYA 1343
Query: 242 --LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKIL 297
L+ + R + I +DS S+L +KN S ++ I EL+
Sbjct: 1344 IGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRIIQAIHQSAGELRAR 1403
Query: 298 NITVKFLWIPSHLGIAGNVQVDELAK----NSQNAPLLSMMTSEDLKSAIKKKLLSEWHL 353
I ++ W+P H G GN D LAK + P +++ E K I++ + EWH
Sbjct: 1404 GIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSRE--KRYIRRNISDEWHQ 1461
Query: 354 HWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKRE 407
W+ + LRRI D L + + R + ++ +LR GHS L TH
Sbjct: 1462 EWRASRNGGHLRRI--DRALPANRTRRLYGSLPRNRAYLLTQLRTGHSWLATHGKQRGLR 1519
Query: 408 DPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
D CE C ++ H+L++C + R K ++IS +LG
Sbjct: 1520 DDEKCE-CGATETVVHVLIDCPRLSGLRQALRRKIGGAFNNISDMLG 1565
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 546 SVFSSELLAIFMLLSHIYSTSS---RTEYIFRDSIFICTDSKSSLLALKNI--MSPNHLV 600
SV+++EL+AI+ + ++ + R+ + I +DS S+L +KN S ++
Sbjct: 1331 SVYAAELMAIYYAIGLVFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 1390
Query: 601 NNILVKINELKILNITVKFLWIPSHLG--------------IAGNVQVPFLEILKSSYKY 646
I EL+ I ++ W+P H G + G + PF +L +Y
Sbjct: 1391 QAIHQSAGELRARGIPLRLQWVPGHCGNPGNEAADRLAKATVGGEKRHPFRHLLSREKRY 1450
Query: 647 IQSD 650
I+ +
Sbjct: 1451 IRRN 1454
>gi|427798873|gb|JAA64888.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1158
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/463 (24%), Positives = 194/463 (41%), Gaps = 68/463 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ +A+ +L+ ++N WG+ L+ ++ ++RPI+++G ++ A L L V
Sbjct: 733 KASRAMGMLRRISNNRWGMRTDTLIMIYRMYIRPILEFGCALFSGAPAWKLRPLILVERQ 792
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR 121
ALR G + LY E+ P L TR K++ R+ +P I +Q
Sbjct: 793 ALRWCLGLPKFVANAVLYKESRIPSLSTRFKLITVQTFLRLYESPIRRDQYIFI-SQPAP 851
Query: 122 NINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE------ 175
N A+ PR F + QVI + P ++ + +I+ ++ E
Sbjct: 852 FFN-ASWPR-----------FH--TPQVIFTQHLLDPLQIKLNDIVVMSDRLSELAITYD 897
Query: 176 -------NLSSVAVKNAFFQFKGENQ--NSLFCYTDGSKTAANSGCAYITETESQVF--K 224
L V N FQ NQ ++ TD S+ +G + F +
Sbjct: 898 DIFPNNAKLLPWNVLNGIFQ-DHLNQIGTTVVIATDASQCEEKAGVGIFSSQLDWSFSVR 956
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFIC----TDSKSSLLALKNIMSP 280
L + +F +E LA+ + L + + + I DS+ +C T ++S +L L ++ P
Sbjct: 957 LPDYTQIFLAEFLAVILALRKLPFSITSVA-IVTDSLSLCSALITPTESHILRLLRLLVP 1015
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK 340
+HL N ++ +W+P H GI N D LAK S P+L+++
Sbjct: 1016 HHLRN---------------LRLIWVPGHRGIVLNEVADTLAKASLAGPVLALLPVTAFV 1060
Query: 341 SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLL---WKSSFDKDRRKEIVICRLRIGHSH 397
+A + + + +V+ L I + L W + R E+V+ RLR +
Sbjct: 1061 AAARFRT-------YALSVLTPSLASISDFQHLQFPWSRKWCGTRATEVVMTRLRCRIPN 1113
Query: 398 LTHNFLLKRED---PPLCEWCNVQLSIQHILLECRKFRASRNK 437
L NF + R P C C +I+H LL CR+F + R +
Sbjct: 1114 L--NFYMHRAGLAVSPSCSICGEAETIEHFLLNCRRFSSLRKR 1154
>gi|255940952|ref|XP_002561245.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585868|emb|CAP93597.1| Pc16g09270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1513
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 127/484 (26%), Positives = 209/484 (43%), Gaps = 74/484 (15%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V PI+DY + ++ ++ L +LNT +L I A+RT +L E
Sbjct: 1035 MRQLYQACVTPIVDYASTVWHDPLRDKTHLRQLNTTQRASLIRILSAFRTVATTTLEVEA 1094
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLILTHAQLGRNINRAN----LPRTVK---- 133
P R + R+ P + P+ L+ AQ R+ R+ L T+K
Sbjct: 1095 YVLPTHLRLRHRAQRTIARLHTLPRDHPIWSALSRAQRRRDNMRSRYRFPLAETLKTMDP 1154
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
SRL L+ D + PW I + S+++ A
Sbjct: 1155 SRLATLETID---------PRPLPPWRAEAFAEIEVKSDRESATERAETIRA-------- 1197
Query: 194 QNSLFCYTDGSKTAANSGCAYIT------ETESQVFKL--YNENSVFSSELLAIFM---- 241
+ L Y+D S + G A +T TE Q ++ + SV +EL+ IF
Sbjct: 1198 TSDLIVYSDASGRKGHLGAAIVTLNENDEVTEFQQIQVGPMDRWSVHVAELIGIFYAVNM 1257
Query: 242 ---LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKI 296
L NT +R I + +C DSKS+L A++N+ S +V+ IL E++
Sbjct: 1258 VFKLFHQRLNTVNRVPVI---ATILC-DSKSALQAIQNVKNKSGQRIVHAILQAATEVQG 1313
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWH 352
NI ++ W+P H GN D LAK + + P +++ E+ + ++ K+ ++W
Sbjct: 1314 ENIKLRLQWMPGHCENRGNDTADRLAKEAAQPGKTHPFRPLLSREN--AFVRSKIYAQWG 1371
Query: 353 LHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLT---HNFLL 404
WK + LR+I D L K R + ++ +LR GH+ L+ F
Sbjct: 1372 QEWKTSTKGAHLRKI--DGGLPARYTRKLYGNLPRNRAYLLTQLRTGHNWLSTYAKKFGF 1429
Query: 405 KREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLGDDHD-EIYKC 458
+ D LCE C VQ ++ H+LLEC + + R + K +S+LLG ++ E K
Sbjct: 1430 REHD--LCE-CGVQETVAHVLLECPRLQELRVELRRKTGDTLSGVSSLLGGSNEGEKGKP 1486
Query: 459 IIIS 462
I+S
Sbjct: 1487 DIVS 1490
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 21/138 (15%)
Query: 511 NSLFCYTDGSKTAANSGCAYIT------ETESQVFKL--YNENSVFSSELLAIFMLLSHI 562
+ L Y+D S + G A +T TE Q ++ + SV +EL+ IF ++ +
Sbjct: 1199 SDLIVYSDASGRKGHLGAAIVTLNENDEVTEFQQIQVGPMDRWSVHVAELIGIFYAVNMV 1258
Query: 563 Y-------STSSRTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKIL 613
+ +T +R I + +C DSKS+L A++N+ S +V+ IL E++
Sbjct: 1259 FKLFHQRLNTVNRVPVI---ATILC-DSKSALQAIQNVKNKSGQRIVHAILQAATEVQGE 1314
Query: 614 NITVKFLWIPSHLGIAGN 631
NI ++ W+P H GN
Sbjct: 1315 NIKLRLQWMPGHCENRGN 1332
>gi|427781821|gb|JAA56362.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1134
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/463 (24%), Positives = 194/463 (41%), Gaps = 68/463 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ +A+ +L+ ++N WG+ L+ ++ ++RPI+++G ++ A L L V
Sbjct: 653 KASRAMGMLRRISNNRWGMRTDTLIMIYRMYIRPILEFGCALFSGAPAWKLRPLILVERQ 712
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR 121
ALR G + LY E+ P L TR K++ R+ +P I +Q
Sbjct: 713 ALRWCLGLPKFVANAVLYKESRIPSLSTRFKLITVQTFLRLYESPIRRDQYIFI-SQPAP 771
Query: 122 NINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE------ 175
N A+ PR F + QVI + P ++ + +I+ ++ E
Sbjct: 772 FFN-ASWPR-----------FH--TPQVIFTQHLLDPLQIKLNDIVVMSDRLSELAITYD 817
Query: 176 -------NLSSVAVKNAFFQFKGENQ--NSLFCYTDGSKTAANSGCAYITETESQVF--K 224
L V N FQ NQ ++ TD S+ +G + F +
Sbjct: 818 DIFPNNAKLLPWNVLNGIFQ-DHLNQIGTTVVIATDASQCEEKAGVGIFSSQLDWSFSVR 876
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFIC----TDSKSSLLALKNIMSP 280
L + +F +E LA+ + L + + + I DS+ +C T ++S +L L ++ P
Sbjct: 877 LPDYTQIFLAEFLAVILALRKLPFSITSVA-IVTDSLSLCSALITPTESHILRLLRLLVP 935
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK 340
+HL N ++ +W+P H GI N D LAK S P+L+++
Sbjct: 936 HHLRN---------------LRLIWVPGHRGIVLNEVADTLAKASLAGPVLALLPVTAFV 980
Query: 341 SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLL---WKSSFDKDRRKEIVICRLRIGHSH 397
+A + + + +V+ L I + L W + R E+V+ RLR +
Sbjct: 981 AAARFRT-------YALSVLTPSLASISDFQHLQFPWSRKWCGTRATEVVMTRLRCRIPN 1033
Query: 398 LTHNFLLKRED---PPLCEWCNVQLSIQHILLECRKFRASRNK 437
L NF + R P C C +I+H LL CR+F + R +
Sbjct: 1034 L--NFYMHRAGLAVSPSCSICGEAETIEHFLLNCRRFSSLRKR 1074
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 100/475 (21%), Positives = 200/475 (42%), Gaps = 63/475 (13%)
Query: 3 SLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVI-------YGSATQSSLSKL 55
+ K ++ L L TWG L +++ A + P M YG Y S + ++ +
Sbjct: 1254 ATKRLSALSALATSTWGTGAINLRQVYRAMIIPQMLYGCSAWHIPGNGYTSRGSAMINAI 1313
Query: 56 NTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILT 115
+ A +II+GA+RT+ ++ E P++ + + R++ +P + + + T
Sbjct: 1314 KRIQRRAAQIITGAFRTTAGPAVDVEAHLLPIQQQLEQTALEATMRIRSSPLH--NDMAT 1371
Query: 116 HAQLGRNINRANLPRTVKSRLEDLQIFDRISA-----------QVIKRDEYIAPWELSVP 164
++ NR + + L DR S Q+ KR ++ P + P
Sbjct: 1372 SSESNTRTNR---------KRDALSPLDRFSGILEHKYNVKLNQLEKRQPHVVPPWWTPP 1422
Query: 165 EIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET------ 218
I S +A + ++ YTDGS + G A + +
Sbjct: 1423 LICIKDS----------ANDAIKEHDTMEPTTMRIYTDGSSINGHVGAAAVAPSLQDNGI 1472
Query: 219 ---ESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALK 275
+Q + + ++V+S+EL + + L + + + + ++F TD+++++ A++
Sbjct: 1473 CMKRTQYMGVSSTSTVYSAELKGLVLALQMVIDIHATGTAPGKCAIF--TDNQAAVQAVR 1530
Query: 276 NIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM 333
N S +++ + ++ L+ L V+F WIP+H+G+ GN + D LAK + + L +
Sbjct: 1531 NPKNSSGQYILVEAIQVLDRLRDLGWEVQFHWIPAHVGVPGNEEADRLAKRAADPALNTE 1590
Query: 334 MTSEDL--------KSAIKKKLLSEWHLHWKNNVINNKLRRI--KEDTLLWKSSFDKDRR 383
DL KS I++ + EW W+ L R+ + + + R
Sbjct: 1591 QPEPDLIRTLLATTKSTIRQAMKGEWETSWEKGKHGRDLFRLGARPGKVTLNTHMGTHRA 1650
Query: 384 KEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
I ++R G L + + + D C+ +++HILLECR + R++
Sbjct: 1651 ISSAITQMRTGKIGLRAYLHDINKADTDKCQCGYGPQTVRHILLECRNWAEERHR 1705
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 512 SLFCYTDGSKTAANSGCAYITET---------ESQVFKLYNENSVFSSELLAIFMLLSHI 562
++ YTDGS + G A + + +Q + + ++V+S+EL + + L +
Sbjct: 1444 TMRIYTDGSSINGHVGAAAVAPSLQDNGICMKRTQYMGVSSTSTVYSAELKGLVLALQMV 1503
Query: 563 YSTSSRTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFL 620
+ + +IF TD+++++ A++N S +++ + ++ L+ L V+F
Sbjct: 1504 IDIHATGTAPGKCAIF--TDNQAAVQAVRNPKNSSGQYILVEAIQVLDRLRDLGWEVQFH 1561
Query: 621 WIPSHLGIAGN 631
WIP+H+G+ GN
Sbjct: 1562 WIPAHVGVPGN 1572
>gi|443713753|gb|ELU06453.1| hypothetical protein CAPTEDRAFT_215116 [Capitella teleta]
Length = 266
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 119/238 (50%), Gaps = 10/238 (4%)
Query: 157 APWELSVPEI-IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 215
PW L PE+ + LT KK+++S++ +++ F S YTDGSK+ + ++
Sbjct: 35 PPWHLVQPEVDLSLTFSKKDSMSALTIRSEFEDALDSYPVSTVFYTDGSKSEDSVARSFF 94
Query: 216 TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALK 275
+ KL + SVF+SE++AI L C ++ F IC+DS S+++A+
Sbjct: 95 SSRLKLKMKLPVQMSVFTSEIIAILSALK--CLEADNEQHQF----VICSDSLSAIMAIH 148
Query: 276 NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMM- 334
+ + V +L I + V F+W PSH+GI GN LA+ + ++ L+ +
Sbjct: 149 GMDVHHPYVLQVLYAIKSISQQEKIVVFMWCPSHVGIPGNEMAHTLAEKALSSTNLAELP 208
Query: 335 -TSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRL 391
+ DL+ IKK + S+W W+ NNKL I W + RR+EIV+ R+
Sbjct: 209 VPASDLRGLIKKYIRSQWQHEWEEQH-NNKLHSIHPTIGPWPPCQREKRREEIVLVRI 265
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 10/183 (5%)
Query: 450 DDHDEIYKCIIISAQVIKRDEYIAPWELSVPEI-IYLTSEKKENLSSVAVKNAFFQFKGE 508
+DH + ++ VI PW L PE+ + LT KK+++S++ +++ F
Sbjct: 15 EDHMDTVGSSPVTHHVIPE---TPPWHLVQPEVDLSLTFSKKDSMSALTIRSEFEDALDS 71
Query: 509 NQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSR 568
S YTDGSK+ + ++ + KL + SVF+SE++AI L + + + +
Sbjct: 72 YPVSTVFYTDGSKSEDSVARSFFSSRLKLKMKLPVQMSVFTSEIIAILSALKCLEADNEQ 131
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 628
+++ IC+DS S+++A+ + + V +L I + V F+W PSH+GI
Sbjct: 132 HQFV------ICSDSLSAIMAIHGMDVHHPYVLQVLYAIKSISQQEKIVVFMWCPSHVGI 185
Query: 629 AGN 631
GN
Sbjct: 186 PGN 188
>gi|427796097|gb|JAA63500.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1225
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 118/452 (26%), Positives = 200/452 (44%), Gaps = 49/452 (10%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K ++A+ IL+ ++N+ G+ R LL ++ +VRP++++G V+Y A L L +
Sbjct: 754 KGVRAVGILRRISNRRSGMRRVTLLSIYRMYVRPVIEFGCVLYSGAPAYKLRPLVLLEKQ 813
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR 121
ALR+ G + + LY E P L TR +IL R +P + AQ G
Sbjct: 814 ALRMCLGLPKFVANKVLYMEARIPSLITRFRILAVQTYLRAYESPLRRNQTVFI-AQPGL 872
Query: 122 NINRANLPRTVKSRLEDLQ-IFDRISAQVIKRDEYIAPWELSVPEIIYLTS---EKKENL 177
+ PR +++ +Q + D +S Q+ RD + P + IY ++L
Sbjct: 873 FFDFP-WPRFHTPQVKFVQSLLDPLSVQI--RD-VLPPCNATNSLKIYFDDIFPNNAKDL 928
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG----CAYITETESQVFKLYNENSVFS 233
S ++ + Q + TD S+ SG C + + S F++ + +F
Sbjct: 929 PSNMLRATLQDYVLRMQAHVIIATDASQRDEKSGIGIYCPVLDWSFS--FRIPDFTPIFM 986
Query: 234 SELLAIFMLLSHICNTRSRPEYIFRDSVFIC---TDSKSSLLALKNIMSPNHLVNNILVK 290
+E LA+ + L + T I DS+ +C T S S L + P+HL +
Sbjct: 987 AEFLAVVLALRKL-TTSINSAVIITDSLSVCSALTASGSKFLNQFKSLVPDHLTH----- 1040
Query: 291 INELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAI---KKKL 347
V+ +W+P H G+ N D LAK + + P +++ + A ++ +
Sbjct: 1041 ----------VRLVWVPGHRGLFINETADALAKAALDGPAINISPTSAFIVAARFRRQMM 1090
Query: 348 LSEWHL-HWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKR 406
+ E+ + KN+ N L + WKS+ +R E++I RLR L NF L R
Sbjct: 1091 MREFDIPSLKNSPDFNHL------STPWKSTSCHNRGLEVIITRLRCRIPSL--NFYLYR 1142
Query: 407 ED---PPLCEWCNVQLSIQHILLECRKFRASR 435
PLC +C + +I+H L+ C KF A R
Sbjct: 1143 AGLVPSPLCSYCREEETIEHFLISCGKFSALR 1174
>gi|342867783|gb|EGU72563.1| hypothetical protein FOXB_16927 [Fusarium oxysporum Fo5176]
Length = 1790
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 115/482 (23%), Positives = 204/482 (42%), Gaps = 71/482 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA---------TQSSL 52
K+ + I+ L L + TWGL+ + ++ V P + Y + +A T SL
Sbjct: 1291 KATRTISALHSLGSSTWGLTFHDMRNIYRGAVLPQIMYACSAWSNANWKTRNTPYTHKSL 1350
Query: 53 SKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR---------RKILLA--NYGTR 101
+L + A R ISGA++ + I +L E P+E + +I L G +
Sbjct: 1351 EQLQRLQARAARAISGAFKATSIPALDVETYLLPVEHQIWKHNAECLGRITLGTETLGEQ 1410
Query: 102 VKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWEL 161
+ +N + RNI R + R ++ +++ Q F +VI +APW +
Sbjct: 1411 EQQRRANRIR--------ERNI-RMSPRRAIQKAIQEEQGFSLKELEVIT-PYVVAPWWI 1460
Query: 162 SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQ 221
I +EK + +++ + +++ YTDGS+ + G A + T +Q
Sbjct: 1461 GPKTFIGENAEKARSRHQHSIE--------KEPDAIHIYTDGSRINGHVGSAAVCTTTNQ 1512
Query: 222 VFKLY----NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL--LALK 275
Y ++V++ EL + + L + R + R V I TD+++++ +A
Sbjct: 1513 AKSAYMGEDTVSTVYAGELQGVSLALQ--IAQQDRDQGNVRTKVMIYTDNQAAIRSVARP 1570
Query: 276 NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN----------- 324
S ++L+ +I +I L+ + V+ WIP+H GI GN D AK
Sbjct: 1571 RGKSGSYLLQDITQRIQTLRAQGLPVEVRWIPAHKGIYGNEAADRAAKEATGWRQRGPPG 1630
Query: 325 --SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNK-LRRIKEDT---LLWKSSF 378
+Q P+L + + LK ++ + W W R E T L F
Sbjct: 1631 PRAQQPPILRSLKA-TLKMWSRRVVNRRWQAQWHQETRGRATFRHTPEPTPRVLQPHKHF 1689
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLKREDP----PLCEWCNVQLSIQHILLECRKFRAS 434
K R+ + +LR + ++FL ++ P P C+ + ++ HILL+CRK A
Sbjct: 1690 AK--RQSAIYTQLRTEKIGM-NDFLFRQRVPGFTDPGCDCREGRQTVAHILLQCRKHSAL 1746
Query: 435 RN 436
RN
Sbjct: 1747 RN 1748
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 79/166 (47%), Gaps = 16/166 (9%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+APW + I +EK + +++ + +++ YTDGS+ + G A +
Sbjct: 1455 VAPWWIGPKTFIGENAEKARSRHQHSIE--------KEPDAIHIYTDGSRINGHVGSAAV 1506
Query: 532 TETESQVFKLY----NENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
T +Q Y ++V++ EL + + L + R + R + I TD+++++
Sbjct: 1507 CTTTNQAKSAYMGEDTVSTVYAGELQGVSLALQ--IAQQDRDQGNVRTKVMIYTDNQAAI 1564
Query: 588 --LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+A S ++L+ +I +I L+ + V+ WIP+H GI GN
Sbjct: 1565 RSVARPRGKSGSYLLQDITQRIQTLRAQGLPVEVRWIPAHKGIYGN 1610
>gi|328696858|ref|XP_003240151.1| PREDICTED: hypothetical protein LOC100568880 [Acyrthosiphon pisum]
Length = 206
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 308 SHLGIAGNVQVDELAKNSQNAPLLSM----MTSEDLKSAIKKKLLSEWHLHWKNNVINNK 363
SH I GN +VD L K + N+ L + T ED I + +W L W+ K
Sbjct: 40 SHSNIEGNEKVDCLPKEAANSTNLEISEKYCTYEDTLRCINTAIEEKWSLKWRRK--ETK 97
Query: 364 LRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLT-HNFLLKREDPPLCEWCNVQLSIQ 422
L IK T WK+ + +R++E+++ RLRIGH+ T H +L+ RED P C C V L+I+
Sbjct: 98 LSEIKRTTDRWKNKSNLNRKEEVILTRLRIGHTRYTLHGYLMSREDQPTCATCGVHLTIK 157
Query: 423 HILLECRKFRASRNKWHLKDDISALLGDDHDEI 455
HIL+ECR+ A+R K+ + + + LG + I
Sbjct: 158 HILVECRQTEAARTKYSIPEFLYQSLGPNESAI 190
>gi|427791653|gb|JAA61278.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 947
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ TWG + CLL L+ + VR +DYGA+IY SAT ++L L+ V+H
Sbjct: 757 KCLKTMNILKVLSRTTWGSDKKCLLNLYRSLVRTRLDYGAIIYQSATPTALKMLDPVHHL 816
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPV-SLILTHAQLG 120
+R+ +GA+RTSP+ESLY E+ + L +R +L Y +V +P S I +
Sbjct: 817 GIRLSTGAFRTSPVESLYVESNEWSLHLQRSLLSFVYYLKVNAEKEHPSHSTISDLSCSA 876
Query: 121 RNINRANLPRTVKSRLEDL--QIFDRISAQVIKRDEYIAPWE 160
+NR +L + R+ L ++ + ++ +Y PW+
Sbjct: 877 LFVNRPSLRQPYALRVRGLAEEMGVPLEHSLMAPVKYPPPWQ 918
>gi|154278122|ref|XP_001539883.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413468|gb|EDN08851.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 765
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 122/461 (26%), Positives = 204/461 (44%), Gaps = 55/461 (11%)
Query: 25 LLRLFYAFVRPIMDYGAVIY----GSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYA 80
+ +L+ A V P + Y + ++ ATQ + L V TAL I +RT ++L
Sbjct: 286 MRQLYTACVVPKLTYASTVWYNPLKGATQ--VKALTKVQRTALIRILSTFRTVATQTLEM 343
Query: 81 ENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR--NINRANLPRTVKSRLE 137
E PP+ R + + ++ P S+P+ L A G N NR P LE
Sbjct: 344 EAHIPPIRARLRQRARDVVISLRTLPQSHPIHGPLRRAMAGATCNGNRCYYP------LE 397
Query: 138 D-LQIFDRISAQVIKRDEYIAP--WELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ 194
D +++F R + I+ + P W+ V + IYL S++ + A++ A + +
Sbjct: 398 DTMRMFHREELEPIEIIDPCPPEPWQKPVFKGIYLDSDR-----ARAIERATKIMENPTK 452
Query: 195 NSLFCYTDGSKTAANSGCAYITETES-------QVFKLYNEN-SVFSSELLAIFMLLSHI 246
+TD +K + G A + ES QV ++ +V ++ELLAI+ L +
Sbjct: 453 ---AVFTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLV 509
Query: 247 CNTRSR---PEYIFRDSVFICTDSKSSLLALKNIMS--PNHLVNNILVKINELKILNITV 301
+ S P R + I +DS+++L A+ N +V NIL EL+ + + +
Sbjct: 510 WRSHSSEGTPTPHQRHTYTILSDSRTALRAIANSSKQVGGQIVQNILHTTKELRSIGVDL 569
Query: 302 KFLWIPSHLGIAGNVQVDELAKNSQNA-PLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNV 359
W+P H GI GN D+LAK S N P + L+ A + EW W +
Sbjct: 570 CLQWVPGHSGIKGNEMADQLAKQSINPNPTRGFPKPASHLREASRNSTTQEWRDEWSSTA 629
Query: 360 INNKLRRIK-----EDTLLWKSSFDKDRRKEIVICRLRIGHSHLTH-NFLLKREDPPLCE 413
LR+I + T ++ + R + ++ +LR GHS L +K D CE
Sbjct: 630 KGTHLRKIDAALPGQHTRRLYATLPRPRAR--LLAQLRTGHSWLNEFRNRIKYADDNKCE 687
Query: 414 WCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
C + S+ H+L++C + + R K ++IS +LG
Sbjct: 688 -CGAKESVHHVLVDCPRLQQQRRVLRQKIGDRFNNISLMLG 727
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
PW+ V + IYL S++ + A++ A + + +TD +K + G A +
Sbjct: 421 PWQKPVFKGIYLDSDR-----ARAIERATKIMENPTK---AVFTDAAKENSALGAAALIM 472
Query: 534 TES-------QVFKLYNEN-SVFSSELLAIF---MLLSHIYSTSSRTEYIFRDSIFICTD 582
ES QV ++ +V ++ELLAI+ L+ +S+ R + I +D
Sbjct: 473 DESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSEGTPTPHQRHTYTILSD 532
Query: 583 SKSSLLALKNIMS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S+++L A+ N +V NIL EL+ + + + W+P H GI GN
Sbjct: 533 SRTALRAIANSSKQVGGQIVQNILHTTKELRSIGVDLCLQWVPGHSGIKGN 583
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 102/465 (21%), Positives = 194/465 (41%), Gaps = 71/465 (15%)
Query: 17 TWGLSRACLLRLFYAFVRPIMDYGAVI-------YGSATQSSLSKLNTVYHTALRIISGA 69
TWG L +++ A + P M YG Y S + ++ + + A +II+GA
Sbjct: 1428 TWGTGAINLRQVYRAMIIPQMLYGCSAWHIPGNGYTSRGSAMINAIKRIQRRAAQIITGA 1487
Query: 70 YRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLP 129
+RT+ ++ E P++ + + R++ +P + + + T ++ NR
Sbjct: 1488 FRTTAGPAVDVEAHLLPIQQQLEQTALEATMRIRSSPLH--NDMATSSESNTRTNR---- 1541
Query: 130 RTVKSRLEDLQIFDRISA-----------QVIKRDEYIAPWELSVPEIIYLTSEKKENLS 178
+ + L DR S ++ KR ++ P + P I S
Sbjct: 1542 -----KCDALSPLDRFSGILEHKYNVQLNRLEKRQPHVVPPWWTPPLICIKDS------- 1589
Query: 179 SVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET---------ESQVFKLYNEN 229
+A + ++ YTDGS + G A + + +Q + +
Sbjct: 1590 ---ANDAIKEHDTMEPTTMRIYTDGSSINGHVGAAAVAPSLQDNGICMQRTQYMGASSTS 1646
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH------L 283
+V+S+EL + + L + + + + ++F TD+++++ A++N P H L
Sbjct: 1647 TVYSAELKGLVLALQMVIDIHATGTAPGKCAIF--TDNQAAVQAVRN---PKHSSGQYIL 1701
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDL---- 339
V I V ++ L+ L V+F WIP+H+G+ GN + D LAK + + L + DL
Sbjct: 1702 VEAIQV-LDRLRDLGWEVQFHWIPAHVGVPGNEEADRLAKRAADPTLNTEQPEPDLIRTL 1760
Query: 340 ----KSAIKKKLLSEWHLHWKNNVINNKLRRI--KEDTLLWKSSFDKDRRKEIVICRLRI 393
KS I++ + EW W+ L R+ + + R VI ++R
Sbjct: 1761 LASTKSTIRQAMKGEWETSWEKGKHGRDLFRLGARPGKATLNTHMGTHRAISSVITQMRT 1820
Query: 394 GHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
G L + + + D C+ +++HILLECR + R++
Sbjct: 1821 GKIGLRAYLHDINKADTDKCQCGYGPQTVRHILLECRNWAEERHR 1865
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 21/135 (15%)
Query: 512 SLFCYTDGSKTAANSGCAYITET---------ESQVFKLYNENSVFSSELLAIFMLLSHI 562
++ YTDGS + G A + + +Q + ++V+S+EL + + L +
Sbjct: 1604 TMRIYTDGSSINGHVGAAAVAPSLQDNGICMQRTQYMGASSTSTVYSAELKGLVLALQMV 1663
Query: 563 YSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNH------LVNNILVKINELKILNIT 616
+ + +IF TD+++++ A++N P H LV I V ++ L+ L
Sbjct: 1664 IDIHATGTAPGKCAIF--TDNQAAVQAVRN---PKHSSGQYILVEAIQV-LDRLRDLGWE 1717
Query: 617 VKFLWIPSHLGIAGN 631
V+F WIP+H+G+ GN
Sbjct: 1718 VQFHWIPAHVGVPGN 1732
>gi|83776064|dbj|BAE66183.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1301
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/464 (23%), Positives = 194/464 (41%), Gaps = 61/464 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P +DY + ++ + ++ L L TV TAL I A+RT E+L E+
Sbjct: 807 MRQLYQACVTPTIDYASTVWHNPLRDKTHLRLLRTVQRTALIRILSAFRTVSTEALEVES 866
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLIL-------THAQLGRNINRANLPRTVK- 133
P R K R+ P N P+ ++ +H G+ A RT+
Sbjct: 867 HILPTHLRLKQRAQITAARLSTLPGNHPIHGVIVRAIARSSHIGSGQRFPLAETMRTMDL 926
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
+RL+ L+ D +APW I + ++++ ++ + + A
Sbjct: 927 NRLQALETIDPTP---------LAPWRTQPFTEIEIEPDREKAKANASARQAM------- 970
Query: 194 QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE--------NSVFSSELLAIFM---L 242
++D S G A + ++Q + SV+++EL+AI+ L
Sbjct: 971 -TGATVFSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGL 1029
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNIT 300
+ + R I +DS S+L A+ N S ++ I ELK I
Sbjct: 1030 VFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIP 1089
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H G GN D LAK + + P +++ E K I+ ++ EW W+
Sbjct: 1090 LRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWR 1147
Query: 357 NNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPP 410
+ LR+I D L S + R + ++ +LR GHS L T+ + ++
Sbjct: 1148 TSKKGGHLRKI--DRTLPSSRTRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQHRFQEEE 1205
Query: 411 LCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
CE C ++ H+L++C + R + K ++IS +LG
Sbjct: 1206 KCE-CGAVETVVHVLIDCPRLNRLRQELRRKIGRAFNNISDMLG 1248
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSR---TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLV 600
SV+++EL+AI+ + ++ + + T R I +DS S+L A+ N S ++
Sbjct: 1014 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1073
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
I ELK I ++ W+P H G GN
Sbjct: 1074 QAIHQAAGELKARGIPLRLQWVPGHCGDPGN 1104
>gi|317159440|ref|XP_001827316.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/464 (23%), Positives = 194/464 (41%), Gaps = 61/464 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P +DY + ++ + ++ L L TV TAL I A+RT E+L E+
Sbjct: 1113 MRQLYQACVTPTIDYASTVWHNPLRDKTHLRLLRTVQRTALIRILSAFRTVSTEALEVES 1172
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLIL-------THAQLGRNINRANLPRTVK- 133
P R K R+ P N P+ ++ +H G+ A RT+
Sbjct: 1173 HILPTHLRLKQRAQITAARLSTLPGNHPIHGVIVRAIARSSHIGSGQRFPLAETMRTMDL 1232
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
+RL+ L+ D +APW I + ++++ ++ + + A
Sbjct: 1233 NRLQALETIDPTP---------LAPWRTQPFTEIEIEPDREKAKANASARQAM------- 1276
Query: 194 QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE--------NSVFSSELLAIFM---L 242
++D S G A + ++Q + SV+++EL+AI+ L
Sbjct: 1277 -TGATVFSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGL 1335
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNIT 300
+ + R I +DS S+L A+ N S ++ I ELK I
Sbjct: 1336 VFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIP 1395
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H G GN D LAK + + P +++ E K I+ ++ EW W+
Sbjct: 1396 LRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWR 1453
Query: 357 NNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPP 410
+ LR+I D L S + R + ++ +LR GHS L T+ + ++
Sbjct: 1454 TSKKGGHLRKI--DRTLPSSRTRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQHRFQEEE 1511
Query: 411 LCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
CE C ++ H+L++C + R + K ++IS +LG
Sbjct: 1512 KCE-CGAVETVVHVLIDCPRLNRLRQELRRKIGRAFNNISDMLG 1554
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSR---TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLV 600
SV+++EL+AI+ + ++ + + T R I +DS S+L A+ N S ++
Sbjct: 1320 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1379
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
I ELK I ++ W+P H G GN
Sbjct: 1380 QAIHQAAGELKARGIPLRLQWVPGHCGDPGN 1410
>gi|317156031|ref|XP_003190671.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1607
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 110/464 (23%), Positives = 194/464 (41%), Gaps = 61/464 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P +DY + ++ + ++ L L TV TAL I A+RT E+L E+
Sbjct: 1113 MRQLYQACVTPTIDYASTVWHNPLRDKTHLRLLRTVQRTALIRILSAFRTVSTEALEVES 1172
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLIL-------THAQLGRNINRANLPRTVK- 133
P R K R+ P N P+ ++ +H G+ A RT+
Sbjct: 1173 HILPTHLRLKQRAQITAARLSTLPGNHPIHEVIVRAIARSSHIGSGQRFPLAETMRTMDL 1232
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
+RL+ L+ D +APW I + ++++ ++ + + A
Sbjct: 1233 NRLQALETIDPTP---------LAPWRTQPFTEIEIEPDREKAKANASARQAM------- 1276
Query: 194 QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE--------NSVFSSELLAIFM---L 242
++D S G A + ++Q + SV+++EL+AI+ L
Sbjct: 1277 -TGATVFSDASGQQNQLGAAAVALDKNQQILGSRQISIGSMSYWSVYAAELMAIYYAIGL 1335
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNIT 300
+ + R I +DS S+L A+ N S ++ I ELK I
Sbjct: 1336 VFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRILQAIHQAAGELKARGIP 1395
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H G GN D LAK + + P +++ E K I+ ++ EW W+
Sbjct: 1396 LRLQWVPGHCGDPGNETADRLAKEAVGLEKKHPFRHLLSRE--KGYIRDRISKEWEQEWR 1453
Query: 357 NNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPP 410
+ LR+I D L S + R + ++ +LR GHS L T+ + ++
Sbjct: 1454 TSKKGGHLRKI--DRTLPSSRTRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQHRFQEEE 1511
Query: 411 LCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
CE C ++ H+L++C + R + K ++IS +LG
Sbjct: 1512 KCE-CGAVETVVHVLIDCPRLNRLRQELRRKIGRAFNNISDMLG 1554
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSR---TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLV 600
SV+++EL+AI+ + ++ + + T R I +DS S+L A+ N S ++
Sbjct: 1320 SVYAAELMAIYYAIGLVFQLAQKNQTTATTTRGPATILSDSMSALQAIANAWNKSGQRIL 1379
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
I ELK I ++ W+P H G GN
Sbjct: 1380 QAIHQAAGELKARGIPLRLQWVPGHCGDPGN 1410
>gi|261336140|dbj|BAI44772.1| pol-like protein [Alternaria alternata]
Length = 1295
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 208/495 (42%), Gaps = 72/495 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA-------TQSSLSK 54
K+ K +N L L WG S L R++ V P M Y ++ +A T+ L+
Sbjct: 785 KATKTVNALSCLGGSNWGASLRDLRRIYEGTVLPQMMYACSVWSNASMKGKLYTKRMLNT 844
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
L ++ A R+ISGAY+ + +L E P+E ++I N T V+ S ++
Sbjct: 845 LQSIQARAARVISGAYKATSRAALDVETFLLPIE--QQIWKHNSYTVVRLLSSKNIA--- 899
Query: 115 THAQLGRNINRANLPRTVKSRLED---LQIFDRISAQVIK---RDEYIA-----PWELSV 163
A G + N A K+R ++++ I++ K R E I PW
Sbjct: 900 --ATSGFHTNTAQPTVADKTRRHTSSWQKVYNDITSMRTKDFDRQEQIPCFLTPPWRQGP 957
Query: 164 PEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG----CAYITETE 219
I T+E+ A + ++SL YTDGS G C +T
Sbjct: 958 TTYIDATAEEAR---------ARHDKEHVKEDSLSIYTDGSGIEGEIGSAALCPLTQQTR 1008
Query: 220 SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI-- 277
S E++V+++EL I + L SR R V I TD+++++ ++ +
Sbjct: 1009 SVHMGSDTESTVYAAELQGISLALQIAQEYASR--NGARRDVAIYTDNQAAVWSIAKVEG 1066
Query: 278 MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS--------QNAP 329
S +++ I ++ EL+ TV WIP+H+GI GN VD+ AK + ++ P
Sbjct: 1067 RSGAYILAEIARQVRELQDNGRTVTVRWIPAHVGIPGNEAVDKAAKEATGWRENGRRSLP 1126
Query: 330 LLSMMTSEDLKSAIKK----KLLSEWHLHWKNNVINNKLRR----IKEDTLLWKSSFDKD 381
+ ++S +K+ + W W+ + R + L +K
Sbjct: 1127 ADAPPQLFTIRSTVKRWCSIQAERAWIAKWRKDTKGRATYRHTPTPTKKVLRLHEGLNK- 1185
Query: 382 RRKEIVICRLRIGHSHLTHNFLLKREDP----PLCEWCNVQLSIQHILLECRKFRASRNK 437
R+ ++ +LR L ++FL R P P C+ + ++ HILL C K R
Sbjct: 1186 -RESALLVQLRTEKIGL-NDFLFARRVPDVTSPRCDCGARRQTVAHILLHCSKRR----- 1238
Query: 438 WHLKDDISA-LLGDD 451
HL+D I A L G D
Sbjct: 1239 -HLRDRIFANLSGRD 1252
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 510 QNSLFCYTDGSKTAANSG----CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYST 565
++SL YTDGS G C +T S E++V+++EL I + L
Sbjct: 979 EDSLSIYTDGSGIEGEIGSAALCPLTQQTRSVHMGSDTESTVYAAELQGISLALQIAQEY 1038
Query: 566 SSRTEYIFRDSIFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIP 623
+SR R + I TD+++++ ++ + S +++ I ++ EL+ TV WIP
Sbjct: 1039 ASRNG--ARRDVAIYTDNQAAVWSIAKVEGRSGAYILAEIARQVRELQDNGRTVTVRWIP 1096
Query: 624 SHLGIAGNVQV 634
+H+GI GN V
Sbjct: 1097 AHVGIPGNEAV 1107
>gi|255940918|ref|XP_002561228.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585851|emb|CAP93579.1| Pc16g09090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 696
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 113/456 (24%), Positives = 191/456 (41%), Gaps = 76/456 (16%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P+MDY + ++ +S L LNTV T L I A+RT L E
Sbjct: 220 MRQLYQACVTPVMDYASTVWHDPLRDKSHLRHLNTVQRTVLIRILSAFRTVATTPLEVEA 279
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNIN-----RANLPRTVK 133
P L R + +A+ T + +P I + RN+ R L +K
Sbjct: 280 HILPTHLRLRRRAQNTIASLHTLPRDHP------IWDTLRPPRNVGVGSYARFPLAEALK 333
Query: 134 S----RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEK---KENLSSVAVKNAF 186
+ RL++L+ D + PW I + S++ +E +V +A
Sbjct: 334 TMNLERLDELETID---------PRPLPPWRTESFTEIEIGSDRETAREPAETVGSTSA- 383
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYIT--------ETESQVFKLYNENSVFSSELLA 238
+ Y+D S + G A + E++ + SV +EL+
Sbjct: 384 ----------IVVYSDASGREGHLGAAAVALGNDLQVIESQQVQVGPMDRWSVHVAELIG 433
Query: 239 IFMLLS---HICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINE 293
IF +S I + R R E+ + I DSKS+L A++N S +++ IL E
Sbjct: 434 IFYAVSTVFKISHQRPRTEHNRTTTATILCDSKSALQAIENPGNKSGQRIIHAILQAAAE 493
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSEDLKSAIKKKLLS 349
++ I ++ WIP H GN D LAK++ + P ++T + ++ I+ K+ +
Sbjct: 494 VQAKGIALRLQWIPGHCDDPGNDAADRLAKDAASPGKTHPFRPLLTRK--RALIRDKIRA 551
Query: 350 EWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLT---HN 401
+W W + LR+I D L S K R + ++ +LR GH+ L+
Sbjct: 552 QWEREWNASTNGGHLRKI--DRTLPASYTRKLYGNLPRGRAYLLTQLRTGHNWLSAYAKT 609
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
F + D + C Q ++ H+L++C R R K
Sbjct: 610 FGFRDNDQCV---CGAQETVTHVLVDCPNLREIRRK 642
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 511 NSLFCYTDGSKTAANSGCAYIT--------ETESQVFKLYNENSVFSSELLAIFMLLSHI 562
+++ Y+D S + G A + E++ + SV +EL+ IF +S +
Sbjct: 382 SAIVVYSDASGREGHLGAAAVALGNDLQVIESQQVQVGPMDRWSVHVAELIGIFYAVSTV 441
Query: 563 YSTS---SRTEYIFRDSIFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITV 617
+ S RTE+ + I DSKS+L A++N S +++ IL E++ I +
Sbjct: 442 FKISHQRPRTEHNRTTTATILCDSKSALQAIENPGNKSGQRIIHAILQAAAEVQAKGIAL 501
Query: 618 KFLWIPSHLGIAGN 631
+ WIP H GN
Sbjct: 502 RLQWIPGHCDDPGN 515
>gi|90409437|ref|ZP_01217503.1| hypothetical protein PCNPT3_00010, partial [Psychromonas sp. CNPT3]
gi|90309457|gb|EAS37676.1| hypothetical protein PCNPT3_00010 [Psychromonas sp. CNPT3]
Length = 776
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 56/349 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K K IN L+ + WG +LRL+ V +++YG++ + A+ + + KL + +
Sbjct: 438 KCSKRINFLRTVTGFWWGAHPTDVLRLYKTTVLSVLEYGSICFHWASNTQILKLERIQYR 497
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKIL---------------------LANYGT 100
LR+ G+ +++ SL G PL R ++L L G+
Sbjct: 498 GLRLALGSMKSTHNMSLEVMTGVMPLRLRFEMLSLRLLVRSSVSNPLIIENFIALIEAGS 557
Query: 101 RVKC-NPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPW 159
+ K N N + H + +NRA LP S ++ D +
Sbjct: 558 KSKIINIYNDFVALQVHPSAPQAVNRAALPECYSS--------------IVSTDSSLRE- 602
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETE 219
EI + ++ + + N + NQ YTDGS + +G +ET
Sbjct: 603 -----EIKVIPNDLRPRVVPGIFVNRYGHIDKMNQ----FYTDGSSSEEGTGFGVFSETT 653
Query: 220 SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN--- 276
FKL +VF++EL AIF L I + D FI TDS S++ ALK
Sbjct: 654 GAFFKLRQPCTVFTAELAAIFYALLLIAASPP-------DQYFIFTDSLSAIEALKTPRA 706
Query: 277 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
+ S + + I+ + L + +W+PSH GI GN + D LAK
Sbjct: 707 VKSQDFFIVKIIELLGSLFDKAFRISLIWVPSHCGIPGNEKADSLAKTG 755
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
YTDGS + +G +ET FKL +VF++EL AIF L I ++ D
Sbjct: 634 YTDGSSSEEGTGFGVFSETTGAFFKLRQPCTVFTAELAAIFYALLLIAASPP-------D 686
Query: 576 SIFICTDSKSSLLALKN---IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
FI TDS S++ ALK + S + + I+ + L + +W+PSH GI GN
Sbjct: 687 QYFIFTDSLSAIEALKTPRAVKSQDFFIVKIIELLGSLFDKAFRISLIWVPSHCGIPGN 745
>gi|154284203|ref|XP_001542897.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411077|gb|EDN06465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1672
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 123/461 (26%), Positives = 202/461 (43%), Gaps = 55/461 (11%)
Query: 25 LLRLFYAFVRPIMDYGAVIY----GSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYA 80
+ +L+ A V P + Y + ++ ATQ + L V TAL I +RT ++L
Sbjct: 1193 MRQLYIACVVPKLTYASTVWYNPLKGATQ--VKALTKVQRTALIRILSTFRTVATQTLEM 1250
Query: 81 ENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR--NINRANLPRTVKSRLE 137
E PPL R + + ++ P S+P+ L A G N +R P LE
Sbjct: 1251 EAHIPPLRARLRQRARDVVIGLRTLPQSHPIHGPLRRAMAGATCNGDRRYYP------LE 1304
Query: 138 D-LQIFDRISAQVIKRDEYIAP--WELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ 194
D +++F R + I+ + P W+ V + IYL S++ + A++ A K
Sbjct: 1305 DTMRMFHREEMEPIETIDPCPPEPWQKPVFKGIYLDSDR-----ARAIERAT---KIMEN 1356
Query: 195 NSLFCYTDGSKTAANSGCAYITETES-------QVFKLYNEN-SVFSSELLAIFMLLSHI 246
+ +TD +K + G A + ES QV ++ +V ++ELLAI+ L +
Sbjct: 1357 PAKAVFTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLV 1416
Query: 247 CNTRSR---PEYIFRDSVFICTDSKSSLLALKNIMSP--NHLVNNILVKINELKILNITV 301
+ S P R + I +DS+++L A+ N ++ NIL EL+ + + +
Sbjct: 1417 WRSHSSEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDL 1476
Query: 302 KFLWIPSHLGIAGNVQVDELAKNSQNA-PLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNV 359
W+P H GI GN D+LAK S N P + L+ A + EW W +
Sbjct: 1477 CLQWVPGHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTA 1536
Query: 360 INNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLTH-NFLLKREDPPLCE 413
LR+I D L + R + ++ +LR GHS L +K D CE
Sbjct: 1537 KGTHLRKI--DAALPGRHARRLYATLPRPRARLLAQLRTGHSWLNEFRNRIKYADDNKCE 1594
Query: 414 WCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
C + S+ H+L++C + + R K ++IS +LG
Sbjct: 1595 -CGAKESVHHVLVDCPRLQQQRRVLRQKIGDRFNNISLMLG 1634
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
PW+ V + IYL S++ + A++ A K + +TD +K + G A +
Sbjct: 1328 PWQKPVFKGIYLDSDR-----ARAIERAT---KIMENPAKAVFTDAAKENSALGAAALIM 1379
Query: 534 TES-------QVFKLYNEN-SVFSSELLAIF---MLLSHIYSTSSRTEYIFRDSIFICTD 582
ES QV ++ +V ++ELLAI+ L+ +S+ R + I +D
Sbjct: 1380 DESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSEGTPPPHQRHTYTILSD 1439
Query: 583 SKSSLLALKNIMSP--NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S+++L A+ N ++ NIL EL+ + + + W+P H GI GN
Sbjct: 1440 SRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWVPGHSGIKGN 1490
>gi|189242251|ref|XP_001808188.1| PREDICTED: similar to pol-like protein [Tribolium castaneum]
Length = 1808
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 23/238 (9%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
I +LK+L ++ WG LLRL+ +R +DYGA Y SA L+KLN + +T++R
Sbjct: 1168 IRLLKMLVHQHWGADTTILLRLYKILIRSKLDYGATAYASAKPHILNKLNPIQNTSIRTA 1227
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
GAY T+P+ESLYA + P LE RR L+ Y ++ N +NP H + N
Sbjct: 1228 LGAYCTTPVESLYALSDIPSLEARRSELILRYAAKISANKTNPA-----HNMMFPNRKED 1282
Query: 127 NLPRTVK------SRLEDLQIFDRISAQV---IKRDEYIAPWELSVP----EIIYLTSEK 173
R VK R++ + +S + +R + PW + P E++ L +K
Sbjct: 1283 LFSRKVKLTPPAYRRIKIASVNLNLSLPITYPFQRSK-TPPWTYNKPRVHTELLNLVKDK 1341
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSV 231
L SV + N +F YTD SK+ G AY+T Q F+L E+ +
Sbjct: 1342 P--LKSVLKTKLAALLTSISSNYIF-YTDASKSDT-VGAAYVTNDTQQAFRLSPESKL 1395
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 362 NKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSI 421
+KLR D W S K R +E+ I RLR+GH+ LT + LK+ DPP C +C +L++
Sbjct: 1393 SKLREAYPDIKKWPPSNLK-RGEEVTINRLRLGHTRLTQEYHLKKVDPPTCCYCEGRLTV 1451
Query: 422 QHILLECRKFRASRNKWHLKDDISALLGDDHDEIYK 457
+HILLEC K+ RN+ + + + +L ++ + K
Sbjct: 1452 RHILLECPKYHDIRNEANFPNRMEDILSPKNEAMIK 1487
>gi|427798001|gb|JAA64452.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1259
Score = 96.7 bits (239), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 112/448 (25%), Positives = 193/448 (43%), Gaps = 44/448 (9%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++LK KTWG+S + +L+L+ + Y +A+++SL L +V ALRI
Sbjct: 791 HLLKFFAGKTWGMSPSAMLQLYRVLFLGFLRYSLPALTNASKTSLRTLQSVQAQALRICL 850
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
G ++ + A G + T I + T ++ P + A L + RA+
Sbjct: 851 GLPVSASTAASIAIAGDHLVTT--HIDVEALRTHIRHLARTPRHHL---ASLPEDRPRAS 905
Query: 128 LPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS--EKKENLSSVAVKN- 184
+TV + E L +A+ + PW L+ P I KK ++SS A+K
Sbjct: 906 FCQTVTAYRESLPTCFTPAAR-----PSVPPWCLTQPNISLAIPGIRKKADMSSPALKQL 960
Query: 185 AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSS--ELLAIFML 242
A + Q + YTDGS +S + + ++ K + S+ EL A+
Sbjct: 961 ALLMLYEKYQGCIHVYTDGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRAA 1020
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKINELKI 296
L I + R++ IF +DSK+ AL++++SP LV I + + L
Sbjct: 1021 LQFISDERAQKWTIF-------SDSKA---ALQSLLSPLRRGPHEQLVFEIAEETHHLTE 1070
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSE 350
+ F W+PSH GI GN + D A+++ PL + L+ +++ S+
Sbjct: 1071 KGHELAFQWLPSHCGIIGNERADRAARSAHTENNEILIPLSRTDAARKLRMLARQRTTSQ 1130
Query: 351 WH-LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKRED 408
W+ H+K+ + + TL + R ++CRL +G + + F + D
Sbjct: 1131 WNEPHFKHARLYT-----LDPTLSLQIPPGLRRGDATLLCRLWLGVAFTNAYAFRIGMAD 1185
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASRN 436
C C +IQHIL EC ++ + R
Sbjct: 1186 TAACYHCGSDETIQHILCECPQYCSQRR 1213
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K A + Q + YTDGS +S
Sbjct: 929 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLMLYEKYQGCIHVYTDGSVLQNSSTA 988
Query: 529 AYITETESQVFKLYNENSVFSS--ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
+ + ++ K + S+ EL A+ L I ++ IF +DSK+
Sbjct: 989 SVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIF-------SDSKA- 1040
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 1041 --ALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGN 1089
>gi|328721829|ref|XP_003247415.1| PREDICTED: hypothetical protein LOC100572018 [Acyrthosiphon pisum]
Length = 152
Score = 95.9 bits (237), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 80/126 (63%), Gaps = 3/126 (2%)
Query: 322 AKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKD 381
A S ++ ++ TS+DL + +K +L+ W HW + + +NKLR +K+ W S +
Sbjct: 5 AVTSGSSSSITKNTSKDLINEAQKSILASWQNHWDDILTSNKLRIVKKTVSKWTYSENAS 64
Query: 382 RRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK 441
RR++ +I R RIGHS++TH++L+ +E P C+ CN L+I+HI++ C KF +SR HL
Sbjct: 65 RREQTIINRARIGHSNITHSYLITKEPRPNCDTCNTPLTIEHIIINCPKFASSR---HLL 121
Query: 442 DDISAL 447
+ S+L
Sbjct: 122 KNPSSL 127
>gi|154274221|ref|XP_001537962.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415570|gb|EDN10923.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1671
Score = 95.5 bits (236), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 113/432 (26%), Positives = 186/432 (43%), Gaps = 59/432 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIY----GSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYA 80
+ +L+ A V P + Y + ++ ATQ + L V TAL I +RT ++L
Sbjct: 1207 MRQLYTACVVPKLTYASTVWYNPLKGATQ--IKALTKVQRTALVRILSTFRTVATQTLEM 1264
Query: 81 ENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR--NINRANLPRTVKSRLE 137
E PPL R + + ++ P S+P+ L A G N NR P LE
Sbjct: 1265 EAHIPPLRARLRQRARDVVIGLRTLPQSHPIHGPLRRAMAGATCNGNRRYYP------LE 1318
Query: 138 D-LQIFDRISAQVIKRDEYIAP--WELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ 194
D +++F R + I+ + P W+ V + IYL S++ + A++ A K
Sbjct: 1319 DTMRMFHREELEPIETIDPCPPEPWQKPVLKGIYLDSDR-----ARAIERAT---KAMEN 1370
Query: 195 NSLFCYTDGSKTAANSGCAYITETESQVFKL--------YNENSVFSSELLAIFMLLSHI 246
+ +TD +K + G A + S + +V ++ELLAI+ L
Sbjct: 1371 PTKAVFTDAAKENSALGAAALIMDNSYRIRYGIQVGVGREKHGNVTTAELLAIYHGL--- 1427
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP--NHLVNNILVKINELKILNITVKFL 304
R + I +DS+++L A+ N +V NIL +LK + + +
Sbjct: 1428 ---------YLRHTYTILSDSRAALRAIANSSKQVGGQIVQNILHTTKQLKSIGVDLCLQ 1478
Query: 305 WIPSHLGIAGNVQVDELAKNSQNA-PLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
W+P H GI GN D+LAK S N P + L+ A + EW W +
Sbjct: 1479 WVPGHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGT 1538
Query: 363 KLRRIK-----EDTLLWKSSFDKDRRKEIVICRLRIGHSHLT-HNFLLKREDPPLCEWCN 416
LR+I + T ++ + R + ++ +LR GHS L + +K D CE C
Sbjct: 1539 HLRKIDAALPGQHTRRLYATLPRPRAR--LLAQLRTGHSWLNEYRNRIKYTDDNKCE-CG 1595
Query: 417 VQLSIQHILLEC 428
+ S+ H+L++C
Sbjct: 1596 AKESVHHVLVDC 1607
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 34/170 (20%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
PW+ V + IYL S++ + A++ A K + +TD +K + G A +
Sbjct: 1342 PWQKPVLKGIYLDSDR-----ARAIERAT---KAMENPTKAVFTDAAKENSALGAAALIM 1393
Query: 534 TESQVFKL--------YNENSVFSSELLAIF--MLLSHIYSTSSRTEYIFRDSIFICTDS 583
S + +V ++ELLAI+ + L H Y+ I +DS
Sbjct: 1394 DNSYRIRYGIQVGVGREKHGNVTTAELLAIYHGLYLRHTYT--------------ILSDS 1439
Query: 584 KSSLLALKNIMSP--NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+++L A+ N +V NIL +LK + + + W+P H GI GN
Sbjct: 1440 RAALRAIANSSKQVGGQIVQNILHTTKQLKSIGVDLCLQWVPGHSGIKGN 1489
>gi|242814149|ref|XP_002486313.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714652|gb|EED14075.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1193
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/444 (25%), Positives = 186/444 (41%), Gaps = 50/444 (11%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +++ A V PI+DY + ++ + + L L TV TAL I A++T+ +L E
Sbjct: 715 MRQIYQACVTPIVDYASTVWHNPLKDKIHLRTLGTVQRTALIRILSAFKTASTAALEVEA 774
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPV----SLILTHAQLGRNINRANLPRTVK- 133
P L+ R +I+ A T + +P + V + H G A RT+
Sbjct: 775 YVLPTNLRLKQRAQIVAARLSTLPEDHPGHTVVTRAATRSNHIGSGPRFPLAETLRTMNL 834
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
+RL+ L+ D + +I E+ + E + +++K + A F
Sbjct: 835 TRLQALETIDPTPPPPWQTPAFI---EIDI-EADHDKAKEKASARQKAAGITVFSDASGQ 890
Query: 194 QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIC------ 247
QN L G+ A +I + SV+++EL+AI+ +S +
Sbjct: 891 QNVL-----GAAAVALDQNQHIIQHRKVCIGSMEYWSVYAAELMAIYYAISLVLKIALEN 945
Query: 248 --NTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKF 303
T S+ E I +DS S+L A+ N S ++ + ELK I ++
Sbjct: 946 WDTTASQQE-----PATILSDSMSALQAISNARNKSGQRIIQAVRQSARELKARGIPLRL 1000
Query: 304 LWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNV 359
W+P H G GN D LAK + + P +++ E K I ++ EW WK +
Sbjct: 1001 QWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSRE--KGFIHNRIQEEWERGWKTSK 1058
Query: 360 INNKLRRIKED-----TLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCE 413
LRRI + T S ++R ++ +LR GHS L TH L + CE
Sbjct: 1059 NGGHLRRIDRNLPAVRTRRMYGSLPRNR--AYLLTQLRTGHSWLATHGKLHGHRENDKCE 1116
Query: 414 WCNVQLSIQHILLECRKFRASRNK 437
C ++ H+L+ C K + R +
Sbjct: 1117 -CGAIETVVHVLIHCPKLKTIRQE 1139
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 15/96 (15%)
Query: 546 SVFSSELLAIFMLLSHIY--------STSSRTEYIFRDSIFICTDSKSSLLALKNIM--S 595
SV+++EL+AI+ +S + +T+S+ E I +DS S+L A+ N S
Sbjct: 922 SVYAAELMAIYYAISLVLKIALENWDTTASQQE-----PATILSDSMSALQAISNARNKS 976
Query: 596 PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
++ + ELK I ++ W+P H G GN
Sbjct: 977 GQRIIQAVRQSARELKARGIPLRLQWVPGHCGDPGN 1012
>gi|427781951|gb|JAA56427.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 94.0 bits (232), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 26/293 (8%)
Query: 159 WELSVPEIIY--LTSEKKENLSSVAVKNAFFQFKGENQNS-LFCYTDGSKTAANSGCAYI 215
W L PE+ KK+ +SSVA+K A E ++ YTDGS TA +S A I
Sbjct: 125 WCLHRPEVRLNIPGVTKKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVI 184
Query: 216 TETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLA 273
S K++ S ++EL+A+ L + IF DSK++L +
Sbjct: 185 IPASSVTIQLKMFYSTSTTAAELVALRAALQFVIEQTPNSWAIF-------CDSKAALQS 237
Query: 274 LKNIM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA-- 328
L + + S LV I +++ TV F W+PSH GI GN Q D A+++ N
Sbjct: 238 LPSALRHGSHEQLVAEIRQVHHDIIEKGHTVIFQWMPSHCGIQGNDQADAAARSAHNGVS 297
Query: 329 ----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK 384
PL +++L+ ++ L WH + +L + D L S RR
Sbjct: 298 SVAIPLSRSDAAKELRVLARRLTLDLWH---SPTYTSARLHTLDPDLKLRIPS-GLSRRH 353
Query: 385 EIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
++ RL +G + ++FL+ D PLCE C ++ H+L +C +F + R+
Sbjct: 354 STLLARLWLGVAFSNAYSFLIGMSDSPLCEVCGCSETVAHLLCDCTRFNSERD 406
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 475 WELSVPEIIY--LTSEKKENLSSVAVKNAFFQFKGENQNS-LFCYTDGSKTAANSGCAYI 531
W L PE+ KK+ +SSVA+K A E ++ YTDGS TA +S A I
Sbjct: 125 WCLHRPEVRLNIPGVTKKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVI 184
Query: 532 TETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLA 589
S K++ S ++EL+A+ L + + + IF DSK++L +
Sbjct: 185 IPASSVTIQLKMFYSTSTTAAELVALRAALQFVIEQTPNSWAIF-------CDSKAALQS 237
Query: 590 LKNIM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
L + + S LV I +++ TV F W+PSH GI GN Q
Sbjct: 238 LPSALRHGSHEQLVAEIRQVHHDIIEKGHTVIFQWMPSHCGIQGNDQA 285
>gi|427791289|gb|JAA61096.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 965
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K LK +NILKVL+ W + CLL L+ + +R +DYGA++Y SA S+L L+ V+H
Sbjct: 767 KCLKTMNILKVLSRTAWCSHKKCLLNLYKSLIRTRLDYGAIMYQSAAPSALKMLDPVHHL 826
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV---KCNPSNPVSLILTHAQ 118
+R+ +GA+RTSP+ESLYAE+ + L +R Y +V K +PS+ L+ +
Sbjct: 827 GIRLSTGAFRTSPVESLYAESNEWSLHLQRSYTAFVYFLKVNGDKEHPSHSTINDLSSSV 886
Query: 119 LGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWE 160
L N P +++ R L + ++ Y+ PW+
Sbjct: 887 LFDNRPSLRQPYSLRVRGLTEETGVALFEHHLMSPAAYLPPWQ 929
>gi|321472863|gb|EFX83832.1| hypothetical protein DAPPUDRAFT_100218 [Daphnia pulex]
Length = 554
Score = 92.8 bits (229), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 109/431 (25%), Positives = 175/431 (40%), Gaps = 53/431 (12%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
+R DYG+ I + + L KL + LR I G ++++P L E G P++ R
Sbjct: 104 PMIRSAYDYGSTILTTIPKKRLEKLEQAQNQILRTIIGCFKSTPKALLNIETGIYPVKDR 163
Query: 91 RKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDL-----QIFDRI 145
L NY R+ P NP + + + N + L L + F R
Sbjct: 164 WDQLAYNYFLRLNEKPWNPAYGTIQELTRRQTTWKTNSTPAAITHLRKLDPTGKKFFKRP 223
Query: 146 SAQVIKRDEYIAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQF-KGENQNSLFCYTDG 203
S+Q + + PW+ S+P Y KK+ S F + N N L YTDG
Sbjct: 224 SSQTPEVKP-LPPWKHFSIP-TNYFPLTKKQATESNQTNQLFNSLTRNPNTNHLEVYTDG 281
Query: 204 S--KTAANSGCAY--ITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
S +T + CA+ + E +V+ L N + F++EL AI L H+ +Y D
Sbjct: 282 SVCETTKTASCAFHIPKKKEDEVWLLKNFTNSFNAELYAIRQALYHLN------KYEM-D 334
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
S I P+ L+ N+ K + WIPSH GI GN D
Sbjct: 335 ST---------------IQPPSSLIQNLPFKQYPTSNGRTRITLTWIPSHAGIVGNEIAD 379
Query: 320 ELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDT-------- 371
+LA N + + + K +++ + + H N+ KL+ +
Sbjct: 380 QLATNIRKNRRNTTTKTITNKIDVRQNIATAKANH--KNITFQKLKTQSTNMAVTSRECF 437
Query: 372 --LLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCE---WCNVQLSIQHILL 426
L W + +K R + + RLR GH+ L H F+ + E L + C + H+LL
Sbjct: 438 GYLPWHT--NKKRTIQSALFRLRSGHNKLNH-FISRLEPETLADCPNGCPEREDATHVLL 494
Query: 427 ECRKFRASRNK 437
C+ + +R++
Sbjct: 495 HCQHYTEARSE 505
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 66/168 (39%), Gaps = 33/168 (19%)
Query: 472 IAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQF-KGENQNSLFCYTDGS--KTAANSG 527
+ PW+ S+P Y KK+ S F + N N L YTDGS +T +
Sbjct: 233 LPPWKHFSIP-TNYFPLTKKQATESNQTNQLFNSLTRNPNTNHLEVYTDGSVCETTKTAS 291
Query: 528 CAY--ITETESQVFKLYNENSVFSSELLAIFMLLSHI--YSTSSRTEYIFRDSIFICTDS 583
CA+ + E +V+ L N + F++EL AI L H+ Y S
Sbjct: 292 CAFHIPKKKEDEVWLLKNFTNSFNAELYAIRQALYHLNKYEMDS---------------- 335
Query: 584 KSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
I P+ L+ N+ K + WIPSH GI GN
Sbjct: 336 --------TIQPPSSLIQNLPFKQYPTSNGRTRITLTWIPSHAGIVGN 375
>gi|358376822|dbj|GAA93326.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 815
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 111/435 (25%), Positives = 184/435 (42%), Gaps = 59/435 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P +DY + ++ +S L T+ TAL I A+RT ++L E+
Sbjct: 341 MHQLYQACVTPTIDYASTVWHDPLRSKTHLRLFETLQRTALIRILSAFRTVSTDALEVES 400
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLILTHAQLGRN-----INRANLPRTVKS-- 134
P R K+ R P N PV I+ A + R+ I R L T+++
Sbjct: 401 HMLPTRLRLKLRAQTTAARFSTLPDNHPVQGIMKRA-MERSTHIYSIARFPLAETMRTMD 459
Query: 135 --RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGE 192
RL+ L+ D +APW + P + +E + A+ + +
Sbjct: 460 LRRLQALETID---------PRPLAPWR-AQPFVKVDIKPDREKAQARALA------RQK 503
Query: 193 NQNSLFCYTDGSKTAANSGCAYIT-ETESQVFKLYNEN-------SVFSSELLAIFM--- 241
+ S+ ++D S+ G A + + QV K + SV+++EL+AI+
Sbjct: 504 SATSITVFSDASEKQNQLGAAAVALDCNLQVLKSRQISIGSMEYWSVYTAELMAIYYAIG 563
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNI 299
L+ + R + I +DS S+L +KN S ++ I ELK I
Sbjct: 564 LVFQLAQRNQRSAETNHEPATILSDSMSALQVIKNSWNKSGQCIIQAIHHSAGELKARGI 623
Query: 300 TVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHW 355
++ W+P H G GN D LAK++ + P +++ E K I++K+ EW W
Sbjct: 624 PLRLQWVPGHCGDPGNEAADRLAKDAVGIDKKHPFKHLLSRE--KGYIRRKIYQEWEQEW 681
Query: 356 KNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLTHNFLLK--RED 408
+ + LRRI D L S + R + ++ +LR GHS L + RED
Sbjct: 682 RTSKNGGHLRRI--DRGLPSSRSRRLYGSLPRNRAYLLTQLRTGHSWLATYGKQRGFRED 739
Query: 409 PPLCEWCNVQLSIQH 423
CE C ++ H
Sbjct: 740 -EQCE-CGATETVVH 752
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEY---IFRDSIFICTDSKSSLLALKNI--MSPNHLV 600
SV+++EL+AI+ + ++ + R + + I +DS S+L +KN S ++
Sbjct: 549 SVYTAELMAIYYAIGLVFQLAQRNQRSAETNHEPATILSDSMSALQVIKNSWNKSGQCII 608
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
I ELK I ++ W+P H G GN
Sbjct: 609 QAIHHSAGELKARGIPLRLQWVPGHCGDPGN 639
>gi|427782051|gb|JAA56477.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 26/294 (8%)
Query: 158 PWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAY 214
PW L +P++ +KK L + A+K F E +N + YTDGS T ++SG A
Sbjct: 124 PWCLYLPQVRLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAV 183
Query: 215 ITETESQVFKLYNENSVFSS--ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL 272
+ +L + S+ EL A+ L +I + R R +VF +DSK +L
Sbjct: 184 VIPAREITLRLKTSHVTTSTAAELTALRCALEYIDSERPS-----RWAVF--SDSKPALQ 236
Query: 273 ALKNIMSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA- 328
+++++ L I+ + +K V F WIP H GI+GNV D A+ S
Sbjct: 237 CVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAARTSHEQE 296
Query: 329 -----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRR 383
PL + L+ + L+EW+ ++ + +L +I TL + RR
Sbjct: 297 TTVPIPLSRTDAASQLRHLARSLCLAEWN---TPSIRHTRLHQIN-PTLELRPPAGLHRR 352
Query: 384 KEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+ ++CRL +G + + L+ D +CE C + I H+L C +F + R
Sbjct: 353 EASLLCRLWLGVAFTKAYTTLIGVTDSAVCEACGTEEDIDHLLCRCPRFASERR 406
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 474 PWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAY 530
PW L +P++ +KK L + A+K F E +N + YTDGS T ++SG A
Sbjct: 124 PWCLYLPQVRLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAV 183
Query: 531 ITETESQVFKLYNENSVFSS--ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL 588
+ +L + S+ EL A+ L +I S E R ++F +DSK +L
Sbjct: 184 VIPAREITLRLKTSHVTTSTAAELTALRCALEYIDS-----ERPSRWAVF--SDSKPALQ 236
Query: 589 ALKNIMSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 632
+++++ L I+ + +K V F WIP H GI+GNV
Sbjct: 237 CVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNV 283
>gi|358376045|dbj|GAA92616.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 861
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 194/437 (44%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 383 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 442
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P+ R + T++ P +P+ +L A+ R N+ R L T+K+
Sbjct: 443 YILPIHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRGNVGSHARFPLAETLKTMNL 502
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 503 ERLDDLEMIDPAPQ---------PPWRTEAFSKIDIATNRE-----IAMEQAE---AARS 545
Query: 194 QNSLFCYTDGSKTAANSGCAY-------ITETESQV-FKLYNENSVFSSELLAIFM---L 242
++ L Y+D S + G A +T Q+ ++ SV ++EL+ I L
Sbjct: 546 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTGSLQIQVGPTDQWSVHAAELIGILYAINL 605
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 606 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 665
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I+ +L++W WK
Sbjct: 666 IRLQWVPGHSEILGNDTADRLAKEAAIPGKTHPFSPLLSRE--RAYIRHGILTQWEKEWK 723
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 724 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 782
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 783 C-LCGGRESIIHVLLDC 798
>gi|427779469|gb|JAA55186.1| Putative tick transposon [Rhipicephalus pulchellus]
gi|427782053|gb|JAA56478.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 133/294 (45%), Gaps = 26/294 (8%)
Query: 158 PWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAY 214
PW L +P++ +KK L + A+K F E +N + YTDGS T ++SG A
Sbjct: 124 PWCLYLPQVRLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAV 183
Query: 215 ITETESQVFKLYNENSVFSS--ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL 272
+ +L + S+ EL A+ L +I + R R +VF +DSK +L
Sbjct: 184 VIPAREITLRLKTSHVTTSTAAELTALRCALEYIDSERPS-----RWAVF--SDSKPALQ 236
Query: 273 ALKNIMSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA- 328
+++++ L I+ + +K V F WIP H GI+GNV D A+ S
Sbjct: 237 CVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNVSADNAARTSHEQE 296
Query: 329 -----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRR 383
PL + L+ + L+EW+ ++ + +L +I TL + RR
Sbjct: 297 TTVPIPLSRTDAASQLRHLARSLCLAEWN---TPSIRHTRLHQIN-PTLELRPPAGLHRR 352
Query: 384 KEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+ ++CRL +G + + L+ D +CE C + I H+L C +F + R
Sbjct: 353 EASLLCRLWLGVAFTKAYTTLIGVTDSSVCEVCGTEEDIDHLLCRCPRFASERR 406
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 15/167 (8%)
Query: 474 PWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAY 530
PW L +P++ +KK L + A+K F E +N + YTDGS T ++SG A
Sbjct: 124 PWCLYLPQVRLTIPGLQKKSALPAPALKQLSLFFLHETYKNHVHIYTDGSTTVSSSGGAV 183
Query: 531 ITETESQVFKLYNENSVFSS--ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL 588
+ +L + S+ EL A+ L +I S E R ++F +DSK +L
Sbjct: 184 VIPAREITLRLKTSHVTTSTAAELTALRCALEYIDS-----ERPSRWAVF--SDSKPALQ 236
Query: 589 ALKNIMSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 632
+++++ L I+ + +K V F WIP H GI+GNV
Sbjct: 237 CVRSVLRRGCHEQLTYEIVRLHHRVKEKGHEVDFQWIPGHCGISGNV 283
>gi|317031342|ref|XP_003188764.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1016
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 194/437 (44%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 536 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 595
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 596 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 655
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 656 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 698
Query: 194 QNSLFCYTDGSKTAANSGCAYIT------ETESQVFKL--YNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TES ++ ++ SV ++EL+ I L
Sbjct: 699 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 758
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 759 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 818
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 819 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 876
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 877 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 935
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 936 C-LCGGRESIIHVLLDC 951
>gi|134077855|emb|CAK40096.1| unnamed protein product [Aspergillus niger]
Length = 1244
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 192/437 (43%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 764 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 823
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 824 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 883
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 884 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 926
Query: 194 QNSLFCYTDGSKTAANSGCA--------YITETESQVFKLYNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TE+ ++ SV ++EL+ I L
Sbjct: 927 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 986
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 987 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1046
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 1047 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 1104
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 1105 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 1163
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 1164 C-LCGGRESIIHVLLDC 1179
>gi|358376848|dbj|GAA93341.1| transposon I factor, partial [Aspergillus kawachii IFO 4308]
Length = 595
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 196/439 (44%), Gaps = 58/439 (13%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 117 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 176
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P+ R + T++ P +P+ +L A+ R N+ R L T+K+
Sbjct: 177 YILPIHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRGNVGSHARFPLAETLKTMNL 236
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D + Q R E + +++ I + E+ E S
Sbjct: 237 ERLDDLEMID-PAPQPPWRTEAFSKRDIATSREIAM--EQAEAARS-------------- 279
Query: 194 QNSLFCYTDGSKTAANSGCAY-------ITETESQV-FKLYNENSVFSSELLAIFM---L 242
++ L Y+D S + G A IT Q+ + SV ++EL+ I L
Sbjct: 280 ESDLVVYSDASGRQGHLGAAAAVLDDASITTGSLQIQVGPMGQWSVHAAELIGILYAINL 339
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 340 INRIVLQQRRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQIIYAILQAAKNTRTHGVT 399
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 400 IRLQWVPGHSEILGNDTADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 457
Query: 357 NNVINNKLRRIKEDTLLWK------SSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDP 409
+ LR+I ++TL K S ++R ++ ++R GH L T+ L D
Sbjct: 458 ESRDGGHLRKI-DNTLPAKYTRRLYGSLPRNR--AYLLTQIRSGHCWLSTYGKLFGFHDD 514
Query: 410 PLCEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 515 DRC-LCGERESILHVLLDC 532
>gi|358376686|dbj|GAA93218.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 640
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 114/464 (24%), Positives = 193/464 (41%), Gaps = 88/464 (18%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V PI+DY + ++ + + L L TV TAL I A+RT +L E+
Sbjct: 173 MRQLYQACVTPILDYASTVWHNPLRDKIHLRLLETVQRTALIRILSAFRTVSTAALEVES 232
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHAQ-----LGRNINRANLPRTVK 133
P L+ R +I+ A + T +PV +++ A+ +G R L T++
Sbjct: 233 YILPTHLRLKQRGQIVAARFST---LPDDHPVHGVISRAKERSTYIGSGA-RFPLAETMR 288
Query: 134 S-RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGE 192
+ L LQ+ + I + APW I + ++++ A NA Q +
Sbjct: 289 TMDLGRLQVLETIDPKPH------APWRSQPFTEIEIEPDREK-----AQANALAQ---Q 334
Query: 193 NQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS--------VFSSELLAIFMLLS 244
+ S+ ++D S G A + +Q + S V+++EL+ I+ +
Sbjct: 335 STTSITVFSDASGKENQLGAAAVALDHNQQIMGSRQISIGSMEYWSVYAAELMTIYYAIG 394
Query: 245 HICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFL 304
VF ++ A + + IL ELK I ++
Sbjct: 395 ---------------LVFQLAQKHATTTATQGPAT-------ILSDTAELKARGIPLRLQ 432
Query: 305 WIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVI 360
W+P H G GN D LAK + A P +++ E K+ I+ K+ EW WK +
Sbjct: 433 WVPGHCGDPGNETADRLAKETVGAENKHPFQHLLSRE--KAFIRNKIKKEWEQEWKTSKN 490
Query: 361 NNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLT-----HNFLLKREDPP 410
LRR+ D L S + R + ++ +LR GHS L H F D
Sbjct: 491 GGHLRRV--DQALPASRTRRLYGSLPRNRAYLLAQLRTGHSWLATYAKQHGF----RDNE 544
Query: 411 LCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
CE C ++ H+L++C + RA R + K +++S +LG
Sbjct: 545 QCE-CGATETVVHVLIDCPRLRALRQELRRKIGGGSNNVSDMLG 587
>gi|443723447|gb|ELU11866.1| hypothetical protein CAPTEDRAFT_187673 [Capitella teleta]
Length = 225
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 9/197 (4%)
Query: 156 IAPWELSVPEI-IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
I PW L PE+ + LTS KK++ S++ +++ F +S YTDGSK+ + C++
Sbjct: 34 IPPWHLVQPEVDLSLTSFKKDSKSALTIRSEFEDALDRYPDSTLFYTDGSKSEDSVACSF 93
Query: 215 ITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL 274
+ KL + SVF+SEL+AI L + + +++ IC+D+ S+++A+
Sbjct: 94 FSNRLRLKMKLPVQMSVFTSELIAILSALKCVEVDNEQHQFV------ICSDALSAIMAI 147
Query: 275 KNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMM 334
+ + V +L I + V F+W P H+GI GN D LAK + ++ L+ +
Sbjct: 148 HGMDVRHPYVLKVLYAIKSIYQQEKIVVFMWCPPHVGIPGNEMADTLAKEALSSTNLAEL 207
Query: 335 T--SEDLKSAIKKKLLS 349
T + DL+ IKK + S
Sbjct: 208 TVRASDLRCLIKKYIRS 224
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 7/161 (4%)
Query: 472 IAPWELSVPEI-IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
I PW L PE+ + LTS KK++ S++ +++ F +S YTDGSK+ + C++
Sbjct: 34 IPPWHLVQPEVDLSLTSFKKDSKSALTIRSEFEDALDRYPDSTLFYTDGSKSEDSVACSF 93
Query: 531 ITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL 590
+ KL + SVF+SEL+AI L + + + +++ IC+D+ S+++A+
Sbjct: 94 FSNRLRLKMKLPVQMSVFTSELIAILSALKCVEVDNEQHQFV------ICSDALSAIMAI 147
Query: 591 KNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ + V +L I + V F+W P H+GI GN
Sbjct: 148 HGMDVRHPYVLKVLYAIKSIYQQEKIVVFMWCPPHVGIPGN 188
>gi|134077781|emb|CAK45821.1| unnamed protein product [Aspergillus niger]
Length = 1644
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 194/437 (44%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 1164 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 1223
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 1224 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 1283
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 1284 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 1326
Query: 194 QNSLFCYTDGSKTAANSGCAYIT------ETESQVFKL--YNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TES ++ ++ SV ++EL+ I L
Sbjct: 1327 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1386
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 1387 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1446
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 1447 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 1504
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 1505 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 1563
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 1564 C-LCGGRESIIHVLLDC 1579
>gi|317031412|ref|XP_003188771.1| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1653
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 192/437 (43%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 1173 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 1232
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 1233 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 1292
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 1293 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 1335
Query: 194 QNSLFCYTDGSKTAANSGCA--------YITETESQVFKLYNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TE+ ++ SV ++EL+ I L
Sbjct: 1336 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1395
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 1396 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1455
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 1456 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 1513
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 1514 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 1572
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 1573 C-LCGGRESIIHVLLDC 1588
>gi|317031356|ref|XP_001393251.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1677
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 107/437 (24%), Positives = 192/437 (43%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 1210 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 1269
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 1270 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 1329
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 1330 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 1372
Query: 194 QNSLFCYTDGSKTAANSGCA--------YITETESQVFKLYNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TE+ ++ SV ++EL+ I L
Sbjct: 1373 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1432
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 1433 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1492
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 1493 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 1550
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 1551 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 1609
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 1610 C-LCGGRESIIHVLLDC 1625
>gi|134077756|emb|CAK45797.1| unnamed protein product [Aspergillus niger]
Length = 1536
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 108/437 (24%), Positives = 194/437 (44%), Gaps = 54/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++ Y + ++ ++ L +L TV TAL I A+RT +L E
Sbjct: 1056 MRQLYEACVTPVVQYASTVWHDPLRDKTHLRQLRTVQRTALIRILSAFRTVATSTLDVEA 1115
Query: 83 GQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGR-NIN---RANLPRTVKS--- 134
P R + T++ P +P+ +L A+ R N+ R L +K+
Sbjct: 1116 YMLPTHLRLRQRAQTTITQLHTLPRKHPIREVLLRARRRRDNVGSHARFPLAEALKTMNL 1175
Query: 135 -RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D PW I + + ++ +A++ A +
Sbjct: 1176 ERLDDLEMIDPAPQ---------PPWRAEAFSKIDIATNRE-----IAMEQAE---AARS 1218
Query: 194 QNSLFCYTDGSKTAANSGCAYIT------ETESQVFKL--YNENSVFSSELLAIFM---L 242
++ L Y+D S + G A TES ++ ++ SV ++EL+ I L
Sbjct: 1219 ESDLVVYSDASGRQGHLGAAAAVLDDESVTTESLQIQVGPTDQWSVHAAELIGILYAINL 1278
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALK--NIMSPNHLVNNILVKINELKILNIT 300
++ I + R +V I +DS S+LLA++ S ++ IL + +T
Sbjct: 1279 INRIVLQQRRAGQKRARTVTILSDSTSALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVT 1338
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ W+P H I GN D LAK + + P +++ E ++ I++ +L++W WK
Sbjct: 1339 IRLQWVPGHSEILGNDAADRLAKEAAIPGKTHPFSPLLSRE--RAYIRQGILTQWEKEWK 1396
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR+I ++TL K + R + ++ ++R GH L T+ L D
Sbjct: 1397 ESRDGGHLRKI-DNTLPAKYTRRLYGALPRNRAYLLTQIRSGHCWLSTYGKLFGFRDDDR 1455
Query: 412 CEWCNVQLSIQHILLEC 428
C C + SI H+LL+C
Sbjct: 1456 C-LCGGRESIIHVLLDC 1471
>gi|322702355|gb|EFY94018.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 639
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 139/319 (43%), Gaps = 34/319 (10%)
Query: 129 PR-TVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFF 187
PR ++ ++D Q F+ I+ + PW + + +EK + ++ N
Sbjct: 292 PRKAIQKAIQDEQEFN-ITGMEAMTAHVVPPWWIGPKAFVEENAEKAQERHRYSIDN--- 347
Query: 188 QFKGENQNSLFCYTDGSKTAANSG----CAYITETESQVFKLYNENSVFSSELLAIFMLL 243
N++ YTD S + G C I +T+S N ++ ++ EL I + L
Sbjct: 348 -----EPNAIHLYTDRSGNNGHVGAAAVCTTINQTKSAYMGDDNVSTAYAGELQGISLAL 402
Query: 244 SHICNTRSRPEYIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITV 301
R+R R+ V I TD+++++ +A S ++L+ +I ++ EL+ +TV
Sbjct: 403 QIAQEDRNRGS--IREKVLIYTDNQAAVRSVARPRGESGSYLLQDITRRMQELQAQGLTV 460
Query: 302 KFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVIN 361
+ WIP+H GI GN D+ AK NA K+ +++ W W+
Sbjct: 461 EDRWIPAHTGIHGNEAADQAAK---NATGWRKKGPPGPKAQRSQRVNKRWQAQWQQETRG 517
Query: 362 NKLRRIKEDTLLWKSSFDK--DRRKEIVICRL---RIGHSHLTHNFLLKREDP----PLC 412
R + S K +R+ + +L +IG +NFL KR P P C
Sbjct: 518 RATFRHTSEPTPKVSQPRKHFSKRQSAIYVQLQNEKIG----LNNFLFKRRVPGVTDPRC 573
Query: 413 EWCNVQLSIQHILLECRKF 431
+ + ++ HILL+CR++
Sbjct: 574 DCGESRQTVAHILLQCRRY 592
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 16/166 (9%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG---- 527
+ PW + + +EK + ++ N N++ YTD S + G
Sbjct: 319 VPPWWIGPKAFVEENAEKAQERHRYSIDN--------EPNAIHLYTDRSGNNGHVGAAAV 370
Query: 528 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
C I +T+S N ++ ++ EL I + L + R R+ + I TD+++++
Sbjct: 371 CTTINQTKSAYMGDDNVSTAYAGELQGISLALQ--IAQEDRNRGSIREKVLIYTDNQAAV 428
Query: 588 --LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+A S ++L+ +I ++ EL+ +TV+ WIP+H GI GN
Sbjct: 429 RSVARPRGESGSYLLQDITRRMQELQAQGLTVEDRWIPAHTGIHGN 474
>gi|427781953|gb|JAA56428.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 26/293 (8%)
Query: 159 WELSVPEIIY--LTSEKKENLSSVAVKNAFFQFKGENQNS-LFCYTDGSKTAANSGCAYI 215
W L PE+ KK+ +SSVA+K A E ++ YTDGS TA +S A I
Sbjct: 125 WCLHRPEVRLNIPGVTKKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVI 184
Query: 216 TETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLA 273
S K++ S ++EL+A+ L + IF DSK++L +
Sbjct: 185 IPASSVTIQLKMFYSTSTTAAELVALRAALQFVIEQTPNSWAIF-------CDSKAALQS 237
Query: 274 LKNIM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA-- 328
L + + S LV I +++ V F W+PSH GI GN Q D A+++ +
Sbjct: 238 LPSALRHGSHEQLVAEIRQVHHDIIEKGHQVIFQWMPSHCGIQGNDQADAAARSAHDGVS 297
Query: 329 ----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK 384
PL +++L+ ++ L WH + +L + D L S RR
Sbjct: 298 SVAIPLSRSDAAKELRVLARRLTLDLWH---SPTYTSARLHTLDPDLKLRIPS-GLSRRH 353
Query: 385 EIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
++ RL +G + ++FL+ D PLCE C ++ H+L +C +F + R+
Sbjct: 354 STLLARLWLGVAFSNAYSFLIGMSDSPLCEVCGCSETVAHLLCDCTRFNSERD 406
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 77/168 (45%), Gaps = 15/168 (8%)
Query: 475 WELSVPEIIY--LTSEKKENLSSVAVKNAFFQFKGENQNS-LFCYTDGSKTAANSGCAYI 531
W L PE+ KK+ +SSVA+K A E ++ YTDGS TA +S A I
Sbjct: 125 WCLHRPEVRLNIPGVTKKKRMSSVALKQAALLHLHEVYSAHTHIYTDGSVTATSSTAAVI 184
Query: 532 TETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLA 589
S K++ S ++EL+A+ L + + + IF DSK++L +
Sbjct: 185 IPASSVTIQLKMFYSTSTTAAELVALRAALQFVIEQTPNSWAIF-------CDSKAALQS 237
Query: 590 LKNIM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
L + + S LV I +++ V F W+PSH GI GN Q
Sbjct: 238 LPSALRHGSHEQLVAEIRQVHHDIIEKGHQVIFQWMPSHCGIQGNDQA 285
>gi|427798837|gb|JAA64870.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1174
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 191/448 (42%), Gaps = 44/448 (9%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++LK KTWG+S + +L+L+ + Y +A+++SL L +V ALRI
Sbjct: 752 HLLKFFAGKTWGMSPSAMLQLYRVLFLGFLRYSLPALTNASKTSLRTLQSVQAQALRICL 811
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
G ++ + A G + T I + T ++ P + A L + RA+
Sbjct: 812 GLPASASTAASIAIAGDHLVTT--HIDVEALRTHIRHLARTPRHHL---ASLPEDRPRAS 866
Query: 128 LPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS--EKKENLSSVAVKN- 184
+TV + E L +A+ + PW L+ P I KK ++SS A+K
Sbjct: 867 FCQTVTAYRESLPTCFTPAAR-----PSVPPWCLTQPNISLAIPGIRKKADMSSPALKQL 921
Query: 185 AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSS--ELLAIFML 242
A + Q + YTDGS +S + + ++ K + S+ EL A+
Sbjct: 922 ALLMLYEKYQGCIHVYTDGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRAA 981
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKINELKI 296
L I + R++ IF +DSK+ AL++++SP LV I + + L
Sbjct: 982 LQFISDERAQKWTIF-------SDSKA---ALQSLLSPLRRGPHEQLVFEIAEETHHLTE 1031
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSE 350
+ F W+PSH GI GN + D A+++ PL + L+ +++ S+
Sbjct: 1032 KGHELAFQWLPSHCGIIGNERADRAARSAHTENNEILIPLSRTDAARKLRMLARQRTTSQ 1091
Query: 351 WH-LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKRED 408
W+ H+K+ + + TL + R ++CRL + + + F + D
Sbjct: 1092 WNEPHFKHARLYT-----LDPTLSLQIPPGLRRGDATLLCRLWLDVAFTKAYAFRIGMAD 1146
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASRN 436
C C +IQHIL E ++ + R
Sbjct: 1147 TAACYHCGSDDTIQHILCESPQYCSQRR 1174
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K A + Q + YTDGS +S
Sbjct: 890 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLMLYEKYQGCIHVYTDGSVLQNSSTA 949
Query: 529 AYITETESQVFKLYNENSVFSS--ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
+ + ++ K + S+ EL A+ L I ++ IF +DSK+
Sbjct: 950 SVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIF-------SDSKA- 1001
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 1002 --ALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGN 1050
>gi|427798839|gb|JAA64871.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1220
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 111/444 (25%), Positives = 198/444 (44%), Gaps = 46/444 (10%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++LK KTWG++ + +L+L+ + Y +A++++ L +V ALRI
Sbjct: 752 HLLKFFAGKTWGMTPSAMLQLYRVLFLGFLRYSLPALTNASKTNQRILQSVQAQALRICL 811
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
G R++ + A ++T I + T ++ P + A L + R++
Sbjct: 812 GLPRSASTAASIAIARDHLVKT--HIDVETLRTHIRHLARTPRHHL---ASLPADRPRSS 866
Query: 128 LPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS--EKKENLSSVAVKNA 185
+TV + E L ++ + PW L+ P I KK ++SS A+K
Sbjct: 867 FCQTVAAYREYLP-----TSFTPATRPSVPPWCLTQPSINLTIPGIRKKADMSSPALKQL 921
Query: 186 FFQFKGEN-QNSLFCYTDGSKTAANSGCAYITETESQV--FKLYNENSVFSSELLAIFML 242
E Q S+ YTDGS +S A + ++ FK + + ++EL A+ +
Sbjct: 922 ALLLLYEKYQGSMHVYTDGSVMPNSSTAAVVIPMKATTIKFKTSHLTTSTAAELAALRVA 981
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKINELKI 296
L I + R++ IF +DSK+ AL++++SP LV I + + L
Sbjct: 982 LDFITDERAQKWAIF-------SDSKA---ALQSLLSPLRRGLHEQLVFEITEETHRLIE 1031
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSE 350
+ F W+PSH GI GN + D+ A+++ PL + L+ ++ +S+
Sbjct: 1032 KGHQITFQWLPSHCGIIGNERADQAARSAHTESSQILIPLSRTDAAWKLRVLARQCTVSQ 1091
Query: 351 WH-LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTH--NFLLKRE 407
W+ H+KN + + + TL + R ++CRL +G + TH F +
Sbjct: 1092 WNEPHFKNARLYS-----LDPTLSLRIPPGLRRGDATLLCRLWLGVA-FTHAYAFRIGMA 1145
Query: 408 DPPLCEWCNVQLSIQHILLECRKF 431
D C+ C+ +IQHIL EC ++
Sbjct: 1146 DTAACDHCSGDETIQHILCECPQY 1169
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 890 VPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 949
Query: 529 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
A + ++ FK + + ++EL A+ + L I ++ IF +DSK+
Sbjct: 950 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 1001
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 1002 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGN 1050
>gi|242826135|ref|XP_002488580.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712398|gb|EED11824.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1154
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 109/452 (24%), Positives = 186/452 (41%), Gaps = 73/452 (16%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +++ A V PI+DY + ++ + + L L TV TAL I A++T+ +L E
Sbjct: 683 MRQIYQACVTPIVDYASTVWHNPLKDKIHLRTLGTVQRTALIRILSAFKTASTAALEVEA 742
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN---------LP 129
P L+ R +I+ A T + +P H + R + R+N L
Sbjct: 743 YVLPTNLRLKQRAQIVAARLSTLPEDHPG--------HTVVTRAVTRSNHIGSGPRFPLA 794
Query: 130 RTVK----SRLEDLQIFDRISAQVIKRDEYIAPWE-LSVPEI-IYLTSEKKENLSSVAVK 183
T++ +RL+ L+ D PW+ L+ EI I +K + +S K
Sbjct: 795 ETLRIMNLTRLQALETIDPTPP---------PPWQTLAFIEIDIEADHDKAKEKASARQK 845
Query: 184 NAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLL 243
A ++F G + + A+I + SV+++EL+AI+ +
Sbjct: 846 AAGI--------TVFSDASGQQNVLGA-AAHIIQHRKVCIGSMEYWSVYTAELMAIYYAI 896
Query: 244 SHIC--------NTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINE 293
S + T S+ E I +DS S+L A+ N S ++ + E
Sbjct: 897 SLVLKIALENWDTTASQQE-----PATILSDSMSALQAISNARNKSGQRIIQAVRQSARE 951
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLS 349
LK I ++ W+P H GN D LAK + + P +++ E K I+ ++
Sbjct: 952 LKARGIPLRLQWVPGHYSDLGNEAADRLAKEAVGLDKEHPFQHLLSRE--KGFIRNRIQE 1009
Query: 350 EWHLHWKNNVINNKLRRIKED---TLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLK 405
EW WK + L RI + W+ R + ++ +LR HS L TH L
Sbjct: 1010 EWERGWKTSKNGGHLWRIDRNLPAVRTWRMYGSLPRNRAYLLTQLRTSHSWLATHGKLHG 1069
Query: 406 REDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
+ CE C ++ H+L+ C K + R +
Sbjct: 1070 HREDDKCE-CGAIETVVHVLIHCPKLKTIRQE 1100
Score = 39.3 bits (90), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 546 SVFSSELLAIFMLLSHIY--------STSSRTEYIFRDSIFICTDSKSSLLALKNIM--S 595
SV+++EL+AI+ +S + +T+S+ E I +DS S+L A+ N S
Sbjct: 883 SVYTAELMAIYYAISLVLKIALENWDTTASQQE-----PATILSDSMSALQAISNARNKS 937
Query: 596 PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
++ + ELK I ++ W+P H GN
Sbjct: 938 GQRIIQAVRQSARELKARGIPLRLQWVPGHYSDLGN 973
>gi|156032517|ref|XP_001585096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980]
gi|154699358|gb|EDN99096.1| hypothetical protein SS1G_13956 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1326
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 189/454 (41%), Gaps = 46/454 (10%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 823 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 882
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+LI T A N + PR
Sbjct: 883 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPR 942
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 943 --RKQLKPTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAA 997
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVF 232
+ N F+++ +N++ YTD S T G + + + V+
Sbjct: 998 MIHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVY 1055
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKI 291
+ ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 1056 NGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKA 1110
Query: 292 NE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSE 350
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 1111 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE 1170
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HN 401
+ N ++ WK S K IC +L+IGH +
Sbjct: 1171 NWIAILNTNNFHQPSSTYSRNYPWKISSKIRVPGNIKRSTICALFQLKIGHGYFKSYLKR 1230
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1231 FGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1261
>gi|270002674|gb|EEZ99121.1| hypothetical protein TcasGA2_TC005227 [Tribolium castaneum]
Length = 321
Score = 89.7 bits (221), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 5/171 (2%)
Query: 286 NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN--SQNAPLLSMMTSEDLKSAI 343
N + K ++ V +W+P+H GI N D++AK P D++ I
Sbjct: 139 NHIKKFKNIQTAEKAVHLIWVPAHYGIEENEHADQIAKQVPEDQEPERLYPVYTDVQQTI 198
Query: 344 KKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL 403
+ K + + HW N KLR + W SS K R +E+ I RLR+ H+ LT +
Sbjct: 199 RTKHANLFQQHW--NQSTAKLREAYPNIKKWASSNLK-RGEEVTINRLRLRHTRLTQEYH 255
Query: 404 LKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDE 454
LK+ DPP C +C +L+++HILLEC K+ RN+ + + + +L +++
Sbjct: 256 LKKVDPPTCCYCEERLTVRHILLECPKYHDIRNEANFPNRMEDILSPKNED 306
>gi|326475951|gb|EGD99960.1| hypothetical protein TESG_08624 [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 114/441 (25%), Positives = 181/441 (41%), Gaps = 65/441 (14%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIES 77
L A +L+ A V P MDY + ++ + ++ L L TV AL A+RT ++
Sbjct: 1150 LRPAQTRQLYQACVAPAMDYASTVWHNPLKDKTHLRMLETVQRAALIRALSAFRTVATKT 1209
Query: 78 LYAENGQPPLETRRKILLANYGTRVKCNPSN-PVSLILT-------HAQLGRNINRANLP 129
L E P R K N R+ PSN PV +L H G + A
Sbjct: 1210 LEVEAHVLPTRLRLKQRAQNVVARLYTLPSNHPVQDVLARSRRRSRHVGTGPRLPMAETM 1269
Query: 130 RTVK-SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQ 188
+T+ RLE L+ D + E I + S+ VK
Sbjct: 1270 KTMDLERLELLETIDPNPPAPWD---------PPIFETITIESD--------PVKAMEEA 1312
Query: 189 FKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICN 248
+ + + Y+D S G A + L + +V +S +
Sbjct: 1313 DRLRTEAAELIYSDASAQKDKIGAAAVI--------LDRQGNV----------EVSRKRD 1354
Query: 249 TRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWI 306
R+RP+ + +V I +DSKS L L N S H+V I +LK ++++ WI
Sbjct: 1355 KRNRPKT--KRTVTILSDSKSGLQTLTNQRNGSGQHIVRAIAKSARDLKAHGVSIRLQWI 1412
Query: 307 PSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
PSH GN D LAK + + P ++++ E K+ I+ ++L+EW WK++
Sbjct: 1413 PSHCNNPGNDTADRLAKEAVGTQPSHPFQNLLSRE--KAFIRDRVLAEWDSEWKSSSKGA 1470
Query: 363 KLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCN 416
LRRI D L + R + ++ +LR GHS L +H + + CE C
Sbjct: 1471 HLRRI--DASLPGNHTRHLYGALPRGRAYLLTQLRTGHSWLASHAKAYRFREDDKCE-CG 1527
Query: 417 VQLSIQHILLECRKFRASRNK 437
+ ++ H+L++C K R K
Sbjct: 1528 AKETVVHVLVDCPKLADLRRK 1548
>gi|443694523|gb|ELT95634.1| hypothetical protein CAPTEDRAFT_227708 [Capitella teleta]
Length = 364
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 96/183 (52%), Gaps = 9/183 (4%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
SV+++EL+AI L+ I + D ICTDS SS+LA+ +I + V +IL
Sbjct: 2 SVYTAELIAINETLTSIA-------LLPYDEFVICTDSLSSILAISSIDLIHPYVQSILQ 54
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLL 348
K L + + F+W PSH+GI GN D LAK + +L+ + D K + +
Sbjct: 55 KCTCLAGRDKRIIFIWCPSHVGIPGNETADTLAKQALGMNILNCPIPHTDFKPITRSFVK 114
Query: 349 SEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED 408
++W W NKL I+ D W + RR+EIVI R+RIGH+ LTH+ LL D
Sbjct: 115 TQWQSEWDQET-GNKLHDIQPDIGSWPPCQREKRREEIVIARVRIGHTFLTHSHLLSGND 173
Query: 409 PPL 411
P+
Sbjct: 174 APM 176
>gi|427780715|gb|JAA55809.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 111/452 (24%), Positives = 196/452 (43%), Gaps = 50/452 (11%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++L+ L K+WG S +L+L+ M Y + G ++++ L ++ ALRI
Sbjct: 10 HVLRFLAGKSWGASVRAMLQLYTVLFLGFMRYSLPVLGRTRRTNVRVLQSIQAQALRICL 69
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
G R + + A P+ T ++ + + + + HA + + A+
Sbjct: 70 GLPRCASSAATVAIARDYPITTYIRV--------------DALRMHIRHAARIPSHHLAS 115
Query: 128 LPRTVKSRLEDLQIFDRISAQVIKRDEYIAP----WELSVPEIIYLTS--EKKENLSSVA 181
LP + I +A P W L E + ++K+ S++A
Sbjct: 116 LPTSRPHSAFSGIIASHCTAIPTNFTHAARPPLPLWCLHPLEALITIPGIQRKKQSSNLA 175
Query: 182 VKNAFFQFKGENQNS-LFCYTDGSKTAANSGCAYITETESQV--FKLYNENSVFSSELLA 238
++ A F E + L YTDGS ++A+S A + +S FK + S ++EL A
Sbjct: 176 LQQATLLFLHEKHSGRLHIYTDGSVSSASSAGAVVIPEKSVTIKFKTSHLTSSTAAELTA 235
Query: 239 IFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKIN 292
I L + + IF +DSK+ AL+ IMSP LV +I + +
Sbjct: 236 IRAALEFVVKEPPQAWSIF-------SDSKA---ALQCIMSPFRRGPNEQLVADIRILHH 285
Query: 293 ELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKK 346
+ + WIP H GI GN + DE A+++ +A PL + L+S ++
Sbjct: 286 RAVEKQHNIVYQWIPGHCGIYGNDRADEAARSAHDALHCAAIPLSRTDAATRLRSLAREL 345
Query: 347 LLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLK 405
L++WH N +L + + L S R +E ++CRL +G + ++F +
Sbjct: 346 TLAQWH---STEFTNARLHNLDPNLQLRLPS-GITRAEETLLCRLWLGVAFTNAYSFRIG 401
Query: 406 REDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
P C+ C+ + +I H+L EC +F+A R +
Sbjct: 402 MASSPTCDNCSCEETIAHLLCECPRFKAPRKE 433
>gi|156052491|ref|XP_001592172.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980]
gi|154704191|gb|EDO03930.1| hypothetical protein SS1G_06411 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1114
Score = 89.0 bits (219), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 116/459 (25%), Positives = 192/459 (41%), Gaps = 56/459 (12%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 611 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 670
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+LI T A N + P+
Sbjct: 671 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ 730
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 731 --RKQLKPTQLEKIKNSIQKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKEE--AA 785
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKT-------------AANSGCAYITETESQVFKLYN 227
+ N F+++ +N++ YTD S T N +Y V +L
Sbjct: 786 MIHNLAFKYRC--KNTITIYTDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-- 841
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNN 286
V++ ELL + + + N+ ++P F+ I +D+++ L LK SP
Sbjct: 842 ---VYNGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQI 893
Query: 287 ILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKK 345
+K E ++ + W+P H + GN D LAK + P S TS K
Sbjct: 894 KAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIK 953
Query: 346 KLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT 399
++ SE + N ++ WK S K IC +L+IGH +
Sbjct: 954 RMKSENWIAILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFK 1013
Query: 400 ---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1014 SYLKRFGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1049
>gi|156062764|ref|XP_001597304.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980]
gi|154696834|gb|EDN96572.1| hypothetical protein SS1G_01498 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1387
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 190/457 (41%), Gaps = 52/457 (11%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 884 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 943
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+L+ T A N + P+
Sbjct: 944 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLVATKLATEKENQDVVATPQ 1003
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 1004 --RKQLKPTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAA 1058
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVF 232
+ N F+++ +N++ YTD S T G + + + V+
Sbjct: 1059 MIHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVY 1116
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKI 291
+ ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 1117 NGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKA 1171
Query: 292 NE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSE 350
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 1172 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE 1231
Query: 351 WHLHWKNNVINNKLRRIKED---TLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT-- 399
+W + N + WK S K IC +L+IGH +
Sbjct: 1232 ---NWITILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFKSY 1288
Query: 400 -HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1289 LKRFGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1322
>gi|2290213|gb|AAB65093.1| Lian-Aa1 retrotransposon protein [Aedes aegypti]
Length = 1189
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 107/455 (23%), Positives = 194/455 (42%), Gaps = 60/455 (13%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSL-SKLNTVYH 60
K+ A + KTWGL + ++ VR I+ YG V + ++ SKL ++
Sbjct: 741 KACMAFGQCRQTFGKTWGLKPKYIKWIYTTVVRSILAYGCVWWQKGEVRTIQSKLGHLHR 800
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLET--RRKILLANYGTRV-KCNPSNPVSLILTHA 117
L +SGA+ T+P +L A PL +++ L +Y V NPV+ TH
Sbjct: 801 MCLMAMSGAFSTTPTAALEAIFDVAPLHIYLKQEALSCSYRLWVLDLLEKNPVNRRSTHT 860
Query: 118 QLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSV----PEIIYLTS-E 172
L P V +D+I +AP +L++ P + T
Sbjct: 861 SL--------FPLLVN--------WDKI---------VLAPSDLTIACNLPYRTFTTQFP 895
Query: 173 KKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCA-YITETE-SQVFKLYNENS 230
+E +S ++ + N++ CYTDGS +G Y E +Q + L +
Sbjct: 896 SREEWTSGYLERSI-------SNNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCT 948
Query: 231 VFSSELLAIFMLLSHICNTRSR-PEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
VF +E+ A+ +C +S + + ++ C+DS++++ AL + S + LV
Sbjct: 949 VFQAEIFAL------MCGVQSALQQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRT 1002
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLS 349
+I EL +N +V +W+P H IAGN DELA++ + + + + K ++
Sbjct: 1003 QIEELNSVN-SVNLVWVPGHSSIAGNELADELARDGASHDFIGPEPAIPISKCWVKLQIN 1061
Query: 350 EW----HLHWKNNVIN---NKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNF 402
W H + N++ + KL + + K + ++ ++ R GH L ++
Sbjct: 1062 SWAATQHKQYWNSLESCRQTKLYITEPSPRVAKYLTNLSKQNCSLLVRALTGHCRLNYHM 1121
Query: 403 L-LKREDPPLCEWCNVQLSIQ-HILLECRKFRASR 435
++R D +C+ C+ H++ C F R
Sbjct: 1122 ANIQRADSFVCDSCDSDYGTSYHLICNCPVFSQMR 1156
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 511 NSLFCYTDGSKTAANSGCA-YITETE-SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSR 568
N++ CYTDGS +G Y E +Q + L +VF +E IF L+ + S+
Sbjct: 911 NNIVCYTDGSLLEGRAGAGVYSRELRLNQFYSLGRNCTVFQAE---IFALMCGV--QSAL 965
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 628
+ + I+ C+DS++++ AL + S + LV +I EL +N +V +W+P H I
Sbjct: 966 QQRVMGKVIYFCSDSQAAIKALASANSRSKLVIACRTQIEELNSVN-SVNLVWVPGHSSI 1024
Query: 629 AGNVQVPFLEILKSSYKYI 647
AGN L +S+ +I
Sbjct: 1025 AGNELADELARDGASHDFI 1043
>gi|443690773|gb|ELT92824.1| hypothetical protein CAPTEDRAFT_204342 [Capitella teleta]
Length = 294
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 123/273 (45%), Gaps = 20/273 (7%)
Query: 129 PRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKK-ENLSSVAVKNAFF 187
PR K R+ R ++R P +P+ + + S++ +N+ + F
Sbjct: 32 PRNTKRRMSLPGALWRPLRSTLRR-----PLRKDIPKTLKVNSQESLKNIPWKLIGKNFK 86
Query: 188 QFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIC 247
G N YTDGSK+ GC + + + L + SV+++EL+AI L+ I
Sbjct: 87 NLLGRYPNFYIFYTDGSKSKEAIGCGFHSRDFNLALGLSCQMSVYTAELIAINETLTSIA 146
Query: 248 NTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIP 307
+ D ICTDS SS+LA+ +I + V +I K L + + F+W P
Sbjct: 147 -------LLPYDEFVICTDSLSSILAISSIDFIHPYVQSIFQKCTCLAGRDKRIIFIWCP 199
Query: 308 SHLGIAGN--VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
SH+GI N + L N N P+ +S +K + SEW + N+L
Sbjct: 200 SHVGIPENETLAKQALGMNILNCPIPHTAFKPIARSFVKTQRQSEW-----DQETGNELH 254
Query: 366 RIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL 398
I+ D W + RR+EIVI RLRIGH+ L
Sbjct: 255 DIQPDIGSWPPCQREKRREEIVIARLRIGHTFL 287
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 474 PWELSVPEIIYLTSEKK-ENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
P +P+ + + S++ +N+ + F G N YTDGSK+ GC + +
Sbjct: 56 PLRKDIPKTLKVNSQESLKNIPWKLIGKNFKNLLGRYPNFYIFYTDGSKSKEAIGCGFHS 115
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ L + SV+++EL+AI L+ I + D ICTDS SS+LA+ +
Sbjct: 116 RDFNLALGLSCQMSVYTAELIAINETLTSI-------ALLPYDEFVICTDSLSSILAISS 168
Query: 593 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
I + V +I K L + + F+W PSH+GI N
Sbjct: 169 IDFIHPYVQSIFQKCTCLAGRDKRIIFIWCPSHVGIPEN 207
>gi|1335691|emb|CAA41925.1| unnamed protein product [Drosophila miranda]
Length = 521
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 146/328 (44%), Gaps = 62/328 (18%)
Query: 18 WGLSRACLLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPI 75
WG++ + L+ A +RPIM YG V++ A ++ L+KL+ V A I+G RT+P
Sbjct: 94 WGMTPYIVRWLYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPG 153
Query: 76 ESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSR 135
E+L +T +L PV L +G+ + R ++R
Sbjct: 154 EAL---------DTVLDLL--------------PVDL------MGKKVATLAALRMREAR 184
Query: 136 LEDLQ------IFDRISAQVIKRDEYIAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQ 188
L I R+ Q+ +R +Y P + LS P + + S + + NA
Sbjct: 185 LWKASAVGHSGILMRLP-QLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANA--- 240
Query: 189 FKGENQNSLFCYTDGSKTAAN-SGCAYITETE-SQVFKLYNENSVFSSELLAIFMLLSHI 246
+ YTDGSK G Y +E E S F+L + SVF +E+ AI +S +
Sbjct: 241 --------VHFYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIV 292
Query: 247 CNTRSRPEYIFRDSVFIC--TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFL 304
R D+ +C +DS++++ AL +I S + V + ++E+ + + +
Sbjct: 293 SKLRL-------DTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIA-EQLDLFLI 344
Query: 305 WIPSHLGIAGNVQVDELAKNSQNAPLLS 332
W+P H I GN DELA+ PLLS
Sbjct: 345 WVPGHRDIEGNDAADELARQGTTIPLLS 372
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 464 QVIKRDEYIAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKT 522
Q+ +R +Y P + LS P + + S + + NA + YTDGSK
Sbjct: 202 QLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANA-----------VHFYTDGSKL 250
Query: 523 AAN-SGCAYITETE-SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580
G Y +E E S F+L + SVF +E+ AI +S + + D+ +C
Sbjct: 251 DGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSK-------LRLDTHLVC 303
Query: 581 --TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+DS++++ AL +I S + V + ++E+ + + +W+P H I GN
Sbjct: 304 VFSDSQAAIKALGSISSNSATVKDCRRSLHEIA-EQLDLFLIWVPGHRDIEGN 355
>gi|156050917|ref|XP_001591420.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980]
gi|154692446|gb|EDN92184.1| hypothetical protein SS1G_08046 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1660
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 191/459 (41%), Gaps = 56/459 (12%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N G S + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 1157 LANSEKGFSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 1216
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+LI T A N + P+
Sbjct: 1217 SPIKPIEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ 1276
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 1277 --RKQLKPTQLEKIKNSIQKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAA 1331
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKT-------------AANSGCAYITETESQVFKLYN 227
+ N F+++ +N++ YTD S T N +Y V +L
Sbjct: 1332 MIHNLAFKYRC--KNTITIYTDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-- 1387
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNN 286
V++ ELL + + + N+ ++P F+ I +D+++ L LK SP
Sbjct: 1388 ---VYNGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQI 1439
Query: 287 ILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKK 345
+K E ++ + W+P H + GN D LAK + P S TS K
Sbjct: 1440 KAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIK 1499
Query: 346 KLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT 399
++ SE + N ++ WK S K IC +L+IGH +
Sbjct: 1500 RMKSENWIAILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFK 1559
Query: 400 ---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1560 SYLKRFGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1595
>gi|156056779|ref|XP_001594313.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980]
gi|154701906|gb|EDO01645.1| hypothetical protein SS1G_04120 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1114
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 189/454 (41%), Gaps = 46/454 (10%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 611 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 670
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+L+ T A N + P+
Sbjct: 671 SPIKPMEIEVALCPPEVRLNTGIKQYAFRLLKISPSHPVNLVATKLATEKENQDVVATPQ 730
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 731 --RKQLKPTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKEE--AA 785
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVF 232
+ N F+++ +N++ YTD S T G + + + V+
Sbjct: 786 MIHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVY 843
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKI 291
+ ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 844 NGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKA 898
Query: 292 NE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSE 350
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 899 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE 958
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HN 401
+ N ++ WK S K IC +L+IGH +
Sbjct: 959 NWIAILNTNNFHQPSSTYSRNYPWKISSKIRVPGNIKRSTICALFQLKIGHGYFKSYLKR 1018
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1019 FGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1049
>gi|255940992|ref|XP_002561265.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585888|emb|CAP93621.1| Pc16g09510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 104/447 (23%), Positives = 188/447 (42%), Gaps = 74/447 (16%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGS--ATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V P++DY + ++ ++ L L TV TAL I A+RT ++ E
Sbjct: 761 MRQLYEACVTPVVDYASTVWHDPLGDKTHLRHLRTVQRTALIRILSAFRTVATSTMEVEA 820
Query: 83 GQPPLETRRKILLANYGTRVKCNPSN-PVSLILTHAQLGRN----INRANLPRTVKS--- 134
P R + + TR+ P + P+ L AQ RN +R L + +K+
Sbjct: 821 HILPTHLRLRHRAQSTITRLHTLPRDHPIWSTLQRAQKRRNNIGSYSRFPLAQALKTMNL 880
Query: 135 -RLEDLQ-IFDRISAQVIKRDEYIAPW------ELSVPEIIYLTSEKKENLSSVAVKNAF 186
RL+DL+ I+ R+ PW E+ + + +++ E + S++
Sbjct: 881 ERLQDLEMIYPRLRP----------PWRTEAFTEIEIVSDREIAAQRAETIRSIS----- 925
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYIT---------ETESQVFKLYNENSVFSSELL 237
+ Y+D S + G A +T + QV + + SV ++EL+
Sbjct: 926 ---------DVVVYSDASGRYGHLGAAAVTLDNNLEVSESVQIQVGSM-DRWSVHAAELI 975
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH-----LVNNILVKIN 292
I + I S + + V + T S+ AL+ I +P + +++ IL
Sbjct: 976 GILHAIEIINKVASERRRLHAEQVRLATILSGSMSALQAIQTPGNKSGQRIIHAILEAAI 1035
Query: 293 ELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLL 348
K +T++ WIP H GN D LAK + + P +++ E K+ ++K +
Sbjct: 1036 NTKTHGVTIRLQWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSRE--KAFVRKNIY 1093
Query: 349 SEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK------DRRKEIVICRLRIGHSHL-THN 401
+W WK + LR I D L + + + R + ++ +LR GH L T
Sbjct: 1094 VQWEKEWKESREGGNLRTI--DNAL-PAKYTRRLYGPLPRNRAYLLTQLRTGHCWLSTFA 1150
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLEC 428
+D C C + +++H+L +C
Sbjct: 1151 KAFHFQDNGRCV-CGDRETLKHVLWDC 1176
Score = 42.7 bits (99), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 511 NSLFCYTDGSKTAANSGCAYIT---------ETESQVFKLYNENSVFSSELLAIFMLLSH 561
+ + Y+D S + G A +T + QV + + SV ++EL+ I +
Sbjct: 925 SDVVVYSDASGRYGHLGAAAVTLDNNLEVSESVQIQVGSM-DRWSVHAAELIGILHAIEI 983
Query: 562 IYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNH-----LVNNILVKINELKILNIT 616
I +S + + + + T S+ AL+ I +P + +++ IL K +T
Sbjct: 984 INKVASERRRLHAEQVRLATILSGSMSALQAIQTPGNKSGQRIIHAILEAAINTKTHGVT 1043
Query: 617 VKFLWIPSHLGIAGN 631
++ WIP H GN
Sbjct: 1044 IRLQWIPGHCAAPGN 1058
>gi|156039259|ref|XP_001586737.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980]
gi|154697503|gb|EDN97241.1| hypothetical protein SS1G_11766 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1232
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 111/454 (24%), Positives = 188/454 (41%), Gaps = 46/454 (10%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 729 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 788
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS PV+L+ T A N + P+
Sbjct: 789 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSYPVNLVATKLATEKENQDVVATPQ 848
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 849 --RKQLKPTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAA 903
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVF 232
+ N F+++ +N++ YTD S T G + + + V+
Sbjct: 904 MIHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVY 961
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKI 291
+ ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 962 NGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKA 1016
Query: 292 NE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSE 350
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 1017 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE 1076
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HN 401
+ N ++ WK S K IC +L+IGH +
Sbjct: 1077 NWIAILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFKSYLKR 1136
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 1137 FGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 1167
>gi|212539053|ref|XP_002149682.1| zinc knuckle domain protein [Talaromyces marneffei ATCC 18224]
gi|210069424|gb|EEA23515.1| zinc knuckle domain protein [Talaromyces marneffei ATCC 18224]
Length = 1849
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 68/352 (19%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYG-AVIYGSAT----QSSLSKLN 56
K+ ++ ++ L TWG S + RL+ A + P M YG A Y AT +++ +
Sbjct: 1340 KAGTSLQAIRGLAGSTWGASLTVMRRLYQAIIIPQMLYGIAAWYHPATAKQRDATVREFA 1399
Query: 57 TVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP--SNPVSL-- 112
+ H A +ISGA+RT+ +E+L E PP+ + + + R++ P + P+ +
Sbjct: 1400 KIQHRAACLISGAFRTTAVEALNVELHLPPMRLQMERICKETAIRIRTGPRFARPIGISE 1459
Query: 113 ---ILTHAQLG----------RNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPW 159
++ + G + + P TV + E + + R APW
Sbjct: 1460 RRPVIQRRRGGWTPMEVQAWKKGGSLTTPPGTVPGKWESRKAYLR------------APW 1507
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETE 219
+ + P++ E++E + S N + YTDGS G +
Sbjct: 1508 Q-APPKVTI--QEREEAIKS----------HNTTTNDIQVYTDGSGYNGQIGAGMVIPEM 1554
Query: 220 SQVFKLY----NENSVFSSELLAIFMLLSHI---CN---TRSRPEYIFRDSVFICTDSKS 269
K Y ++V+++EL I M L I C R+R +++ R + I TD+++
Sbjct: 1555 GITRKAYLGTTGSSTVYAAELKGIVMALEAIQQYCQQRIPRTRNKWLGR-GIRIYTDNQA 1613
Query: 270 SLLALKNIMSPNHLVNNILVKINELKILN------ITVKFLWIPSHLGIAGN 315
+L AL +V+ + L+ILN + + F WIP H GI GN
Sbjct: 1614 TLRALTR----PRMVSGQVHLWTALRILNWCENNNVMISFHWIPGHEGIEGN 1661
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 21/155 (13%)
Query: 511 NSLFCYTDGSKTAANSGCAYITETESQVFKLY----NENSVFSSELLAIFMLLSHIYS-- 564
N + YTDGS G + K Y ++V+++EL I M L I
Sbjct: 1530 NDIQVYTDGSGYNGQIGAGMVIPEMGITRKAYLGTTGSSTVYAAELKGIVMALEAIQQYC 1589
Query: 565 ----TSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILN------ 614
+R +++ R I I TD++++L AL +V+ + L+ILN
Sbjct: 1590 QQRIPRTRNKWLGR-GIRIYTDNQATLRALTR----PRMVSGQVHLWTALRILNWCENNN 1644
Query: 615 ITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQS 649
+ + F WIP H GI GN + + Y+Q
Sbjct: 1645 VMISFHWIPGHEGIEGNEAADKAAKEAAEHGYVQG 1679
>gi|156034873|ref|XP_001585855.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980]
gi|154698775|gb|EDN98513.1| hypothetical protein SS1G_13372 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 731
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 112/454 (24%), Positives = 187/454 (41%), Gaps = 46/454 (10%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + LR I G ++T
Sbjct: 229 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLTLRKILGVFKT 288
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+LI T A N + PR
Sbjct: 289 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPR 348
Query: 131 TVKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
+ +L+ Q+ FD + + I Y PW+ VP + ++ KE +
Sbjct: 349 --RKQLKPTQLEKIKNSIQKDFDPLILEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAA 403
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVF 232
+ N F+++ +N++ YTD S T G + + + V+
Sbjct: 404 MIHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVY 461
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKI 291
+ ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 462 NGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKA 516
Query: 292 NE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSE 350
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 517 AEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE 576
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HN 401
+ N ++ WK S K IC +L+IGH +
Sbjct: 577 NWIAILNTNNFHQPSSTYSRNYPWKISSKIRVPGNIKRSTICALFQLKIGHGYFKSYLKR 636
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 637 FGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 667
>gi|443700898|gb|ELT99633.1| hypothetical protein CAPTEDRAFT_212630, partial [Capitella teleta]
Length = 300
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 129/277 (46%), Gaps = 13/277 (4%)
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR-NINRANLPRTVKSRL-EDLQ-IF 142
P+ R+K+L + RV + +NP + + R +++ N R + R+ EDLQ I
Sbjct: 2 PMTIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTIC 61
Query: 143 DRISAQVIKRDEYIAPWELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCY 200
I A + I W L PE I + KK + ++N F+ + + +
Sbjct: 62 PDIKAITPNQLFNIPYWLLRPPELDISLIHFGKKTANPNYTLRNEFYNLMDKYPDHKVIF 121
Query: 201 TDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFRD 259
TDGSK+ + C+ + +L + S+FS+ELLAI+ +L+ + C+ + +++
Sbjct: 122 TDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL--- 178
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
I TDS SSL A+ N + V IL K L I + W PSH+G+ GN + D
Sbjct: 179 ---IATDSLSSLQAIGNFNIKHPYVFKILQKCTLLHKKGIYLVMAWCPSHVGVMGNERAD 235
Query: 320 ELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHW 355
LAK + + ++ + S D K + +W W
Sbjct: 236 LLAKEALSFTTCTIRVPSSDFKPITHEFYKEKWQEQW 272
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 7/165 (4%)
Query: 475 WELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
W L PE I + KK + ++N F+ + + +TDGSK+ + C+
Sbjct: 78 WLLRPPELDISLIHFGKKTANPNYTLRNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATA 137
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ +L + S+FS+ELLAI+ +L+ + +++ + I TDS SSL A+ N
Sbjct: 138 DNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQ-----QFLIATDSLSSLQAIGN 192
Query: 593 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL 637
+ V IL K L I + W PSH+G+ GN + L
Sbjct: 193 FNIKHPYVFKILQKCTLLHKKGIYLVMAWCPSHVGVMGNERADLL 237
>gi|156055132|ref|XP_001593490.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980]
gi|154702702|gb|EDO02441.1| hypothetical protein SS1G_04917 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1581
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 30/344 (8%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 1228 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 1287
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPR 130
SPI+ + E P E R + Y R +K +PS+PV+LI T A N + PR
Sbjct: 1288 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPR 1347
Query: 131 TVK---SRLEDL-----QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAV 182
+ ++LE + + FD ++ + I Y PW+ VP + ++ KE + +
Sbjct: 1348 RKQLKPTQLEKIKNSIQKDFDPLTLEGIHH-FYFPPWKKEVPYKVNISKLGKE--EAAMI 1404
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVFSS 234
N F+++ +N++ YTD S T G + + + V++
Sbjct: 1405 HNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVYNG 1462
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKINE 293
ELL + + + N+ ++P F+ I +D+++ L LK P +K E
Sbjct: 1463 ELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAE 1517
Query: 294 -LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTS 336
++ + W+P H + GN D LAK + P S TS
Sbjct: 1518 AIQNKGAEISLNWVPGHTFVQGNELADSLAKEATKIPSSSHETS 1561
>gi|156056264|ref|XP_001594056.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980]
gi|154703268|gb|EDO03007.1| hypothetical protein SS1G_05484 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1584
Score = 85.5 bits (210), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 112/453 (24%), Positives = 188/453 (41%), Gaps = 56/453 (12%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
G+ + +L+ A V I DYG++++ L ++ + ALR I G ++TSPI+ +
Sbjct: 1087 GICPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPM 1146
Query: 79 YAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRL 136
E P E R + Y R +K +PS+PV+LI T A N + P+ + +L
Sbjct: 1147 EIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ--RKQL 1204
Query: 137 EDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAF 186
+ Q+ FD ++ + I Y PW+ VP + ++ KE + + N
Sbjct: 1205 KPTQLEKIKNSIQKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAAMIHNLA 1261
Query: 187 FQFKGENQNSLFCYTDGSKT-------------AANSGCAYITETESQVFKLYNENSVFS 233
F+++ +N++ YTD S T N +Y V +L V++
Sbjct: 1262 FKYRC--KNTITIYTDASSTLEGIGVGIGIVVILPNGRISYQETINIGVNQL-----VYN 1314
Query: 234 SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKIN 292
ELL + + + N ++P F+ I +D+++ L LK SP +K
Sbjct: 1315 GELLGVTKAIEY-ANLIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQIKAIKAA 1369
Query: 293 E-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEW 351
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 1370 EAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYAFIGMDIKRMKSEN 1429
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HNF 402
+ N ++ WK S K IC +L+IGH + F
Sbjct: 1430 WIAILNTNNFHQPSSTYSRNYPWKISSKIRVPGNIKRSTICALFQLKIGHGYFKSYLKRF 1489
Query: 403 LLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
+ D C C + S H+LL C ++ +R
Sbjct: 1490 GISSND--NCR-CGGKESPDHLLLSCPLYKMAR 1519
>gi|154272341|ref|XP_001537023.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409010|gb|EDN04466.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 85.5 bits (210), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 194/480 (40%), Gaps = 84/480 (17%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY----GSA--TQSSLSKLNTVYH 60
+N L+ L TWG + A L + A V P + Y ++ G A T+ + L+ +
Sbjct: 1260 LNALRSLAGSTWGSALATLRLAYLAIVVPQITYACSVWHTPRGEAGLTEKMRTTLDRIQR 1319
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
RI+ GAYR + +L E PL ++ L N ILT +Q
Sbjct: 1320 EGARIVGGAYRAASGAALDVELFMTPL----RLQLEERAHHAALN-------ILTGSQFQ 1368
Query: 121 RNIN----------RANLPRTVKSRLED---LQIFDRISAQVIKRDEY-IAPWELSVPEI 166
+ R + P + +RL + +++ + + + R + + PW +
Sbjct: 1369 NEDDNSTSAWTPPIRGDSPTSPLTRLYNSLVMKLGEGAVSYLESRIPFPVKPWWRAPTIT 1428
Query: 167 IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFK 224
I E E L + + A L YTDGS G A + + ++
Sbjct: 1429 ITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAALAPSIHTQELAY 1480
Query: 225 LYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP 280
L E S V+++ELL I M L+ I + R IF TD++++L AL+N S
Sbjct: 1481 LGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAALKALQNPRRSSG 1533
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--------APLLS 332
++ I+ ++ ++ + V+F WIP+H GI GN D LAK + +++
Sbjct: 1534 QSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAKEATGCRQQRGRRGRMIT 1593
Query: 333 MMTSE---------DLKSAIKKKLLSEWHLHWKNNVINNKLRRI--------KEDTLLWK 375
+ T + L SA K +L + + W+ + N R L
Sbjct: 1594 VDTDDTAATPDFLRHLISAAKSELHRQTQVQWERDWENESSGRATYVLTPAPSPTVLHLH 1653
Query: 376 SSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLECRKF 431
S K IV ++R G L FL +R+ P LCE +++H+LL C +F
Sbjct: 1654 HSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQTVRHVLLACPRF 1710
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 513 LFCYTDGSKTAANSGCAYITET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSR 568
L YTDGS G A + + ++ L E S V+++ELL I M L+ I ++ R
Sbjct: 1451 LAVYTDGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRR 1510
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHL 626
IF TD++++L AL+N S ++ I+ ++ ++ + V+F WIP+H
Sbjct: 1511 RAAIF-------TDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQ 1563
Query: 627 GIAGN 631
GI GN
Sbjct: 1564 GIEGN 1568
>gi|154284199|ref|XP_001542895.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411075|gb|EDN06463.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1776
Score = 85.5 bits (210), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 194/480 (40%), Gaps = 84/480 (17%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY----GSA--TQSSLSKLNTVYH 60
+N L+ L TWG + A L + A V P + Y ++ G A T+ + L+ +
Sbjct: 1271 LNALRSLAGSTWGSALATLRLAYLAIVVPQITYACSVWHTPRGEAGLTEKMRTTLDRIQR 1330
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
RI+ GAYR + +L E PL ++ L N ILT +Q
Sbjct: 1331 EGARIVGGAYRAASGAALDVELFMTPL----RLQLEERAHHAALN-------ILTGSQFQ 1379
Query: 121 RNIN----------RANLPRTVKSRLED---LQIFDRISAQVIKRDEY-IAPWELSVPEI 166
+ R + P + +RL + +++ + + + R + + PW +
Sbjct: 1380 NEDDNSTSAWTPPIRGDSPTSPLTRLYNSLVMKLGEGAVSYLESRIPFPVKPWWRAPTIT 1439
Query: 167 IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFK 224
I E E L + + A L YTDGS G A + + ++
Sbjct: 1440 ITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAALAPSIHTQELAY 1491
Query: 225 LYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP 280
L E S V+++ELL I M L+ I + R IF TD++++L AL+N S
Sbjct: 1492 LGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAALKALQNPRRSSG 1544
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--------APLLS 332
++ I+ ++ ++ + V+F WIP+H GI GN D LAK + +++
Sbjct: 1545 QSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAKEATGCRQQRGRRGRMIT 1604
Query: 333 MMTSE---------DLKSAIKKKLLSEWHLHWKNNVINNKLRRI--------KEDTLLWK 375
+ T + L SA K +L + + W+ + N R L
Sbjct: 1605 VDTDDTAATPDFLRHLISAAKSELHRQTQVQWERDWENESSGRATYVLTPAPSPTVLHLH 1664
Query: 376 SSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLECRKF 431
S K IV ++R G L FL +R+ P LCE +++H+LL C +F
Sbjct: 1665 HSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQTVRHVLLACPRF 1721
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 513 LFCYTDGSKTAANSGCAYITET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSR 568
L YTDGS G A + + ++ L E S V+++ELL I M L+ I ++ R
Sbjct: 1462 LAVYTDGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRR 1521
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHL 626
IF TD++++L AL+N S ++ I+ ++ ++ + V+F WIP+H
Sbjct: 1522 RAAIF-------TDNQAALKALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQ 1574
Query: 627 GIAGN 631
GI GN
Sbjct: 1575 GIEGN 1579
>gi|154280491|ref|XP_001541058.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411237|gb|EDN06625.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1765
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 117/480 (24%), Positives = 193/480 (40%), Gaps = 84/480 (17%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY----GSA--TQSSLSKLNTVYH 60
+N L+ L TWG + A L + A V P + Y ++ G A T+ + L+ +
Sbjct: 1260 LNALRSLAGSTWGSALATLRLAYLAIVVPQITYACSVWHTPRGEAGLTEKMRTTLDRIQR 1319
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
RI+ GAYR + +L E PL ++ L N ILT +Q
Sbjct: 1320 EGARIVGGAYRAASGAALDVELFMTPL----RLQLEERAHHAALN-------ILTGSQFQ 1368
Query: 121 RNIN----------RANLPRTVKSRLED---LQIFDRISAQVIKRDEY-IAPWELSVPEI 166
+ R + P + +RL +++ + + + R + + PW +
Sbjct: 1369 NEDDNSTSAWTPPIRGDSPTSPLTRLYHSLVMKLGEGAVSHLESRIPFPVKPWWRAPTIT 1428
Query: 167 IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFK 224
I E E L + + A L YTDGS G A + + ++
Sbjct: 1429 ITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAALAPSIHTQELAY 1480
Query: 225 LYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP 280
L E S V+++ELL I M L+ I + R IF TD++++L AL+N S
Sbjct: 1481 LGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAALKALQNPRRSSG 1533
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--------APLLS 332
++ I+ ++ ++ + V+F WIP+H GI GN D LAK + +++
Sbjct: 1534 QSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLAKEATGCRQQRGRRGRMIT 1593
Query: 333 MMTSE---------DLKSAIKKKLLSEWHLHWKNNVINNKLRRI--------KEDTLLWK 375
+ T + L SA K +L + + W+ + N R L
Sbjct: 1594 VDTDDTAATPDFLRHLISAAKSELHRQTQVQWERDWENESSGRATYALTPAPSPTVLHLH 1653
Query: 376 SSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLECRKF 431
S K IV ++R G L FL +R+ P LCE +++H+LL C +F
Sbjct: 1654 HSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQTVRHVLLACPRF 1710
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 13/125 (10%)
Query: 513 LFCYTDGSKTAANSGCAYITET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSR 568
L YTDGS G A + + ++ L E S V+++ELL I M L+ I ++ R
Sbjct: 1451 LAVYTDGSGIHGKVGAAALAPSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRR 1510
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHL 626
IF TD++++L AL+N S ++ I+ ++ ++ + V+F WIP+H
Sbjct: 1511 RAAIF-------TDNQAALKALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQ 1563
Query: 627 GIAGN 631
GI GN
Sbjct: 1564 GIEGN 1568
>gi|156051534|ref|XP_001591728.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980]
gi|154704952|gb|EDO04691.1| hypothetical protein SS1G_07174 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 947
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 109/456 (23%), Positives = 189/456 (41%), Gaps = 50/456 (10%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GL+ + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 445 LANSEKGLNPKAMRQLYMACVTSIADYGSILWWKEQNQFKKTLQSLQNLALRKILGVFKT 504
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTHAQLGRNINRANLPRT 131
SPI+ + E P E R + Y R +K +PS+P++LI T + N+ +
Sbjct: 505 SPIKPMEIEAALCPPEVRLNAGIKQYTFRLLKISPSHPINLIATKLVTEKE-NQDVVATP 563
Query: 132 VKSRLEDLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVA 181
+ +L+ Q+ FD ++ + I Y PW+ VP + ++ KE +
Sbjct: 564 QRKQLKPTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAAM 620
Query: 182 VKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVFS 233
+ N F+++ +N++ YTD S T G + + + V++
Sbjct: 621 IHNLAFKYRC--KNTITIYTDASSTLEGIGIGIGIAVILPNNRISHQETINIGVNQLVYN 678
Query: 234 SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKIN 292
ELL + + + N+ ++P F+ I +D+++ L LK P +K
Sbjct: 679 GELLGVAKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKAA 733
Query: 293 E-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEW 351
E ++ + W+P H + GN D LAK + P S TS K++ SE
Sbjct: 734 EAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE- 792
Query: 352 HLHWKNNVINNKLRRIKED---TLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT--- 399
+W + N + WK S K IC +L+IGH +
Sbjct: 793 --NWITILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFKSYL 850
Query: 400 HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
F + D C C + S H+LL C ++ +R
Sbjct: 851 KRFGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 883
>gi|169626528|ref|XP_001806663.1| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
gi|160706113|gb|EAT76061.2| hypothetical protein SNOG_16556 [Phaeosphaeria nodorum SN15]
Length = 602
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 108/488 (22%), Positives = 192/488 (39%), Gaps = 81/488 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY-------GSATQSSLSK 54
K++K +N L L WG+ L R++ P M Y I+ G+ TQ +L
Sbjct: 102 KAMKTVNALSCLGGSAWGIGLLDLRRIYEGTALPQMMYACSIWYNANTRGGTYTQKTLDI 161
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
L + A R+I GAYR + +L E P+E ++I N ++ ++ +L
Sbjct: 162 LQGIQARAARVICGAYRATSHAALNVEAYLLPIE--QQIWRHN---------ADAITRLL 210
Query: 115 THAQLG--RNINR-ANLPRTVKSRLEDLQIFDRISAQVIKR-----DE-------YIAPW 159
+ + I + + P + + R+ + + +I + R DE PW
Sbjct: 211 SSQAMTDMSGIQKDSPQPTSTRKRIGHIDSWQKIYNDMKNRRSHGFDEQEPIPPFMTTPW 270
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGS----KTAANSGCAYI 215
I T+EK N + + ++ L YTDGS +T A + C I
Sbjct: 271 REGPATHIEATAEKARNRHDI---------ENDSGRCLSIYTDGSGIDGETGAAAVCPLI 321
Query: 216 TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDS----VFICTDSKSSL 271
ET + ++V+++EL I + L I +Y+ R + + TD+++++
Sbjct: 322 QETRAVHMGATTVSTVYAAELQGISLAL-QIAE-----QYVERGGKRRDIAVYTDNQAAI 375
Query: 272 LALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-- 327
++ S +++ I ++ L+ V WIP+H+GI GN D AK +
Sbjct: 376 WSITKAEGRSGAYILEEIARQVQRLQDKGRPVTVRWIPAHVGIPGNEAADIAAKEATGWR 435
Query: 328 ----------APLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRI----KEDTLL 373
AP L+ K + W W+ N R+ + L
Sbjct: 436 ADGRRQPPAEAPPKLFPLKSTLRRWCKTQAERTWADSWRANTKGRATHRLTPRPTKKVLQ 495
Query: 374 WKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP----PLCEWCNVQLSIQHILLECR 429
K R+ ++ ++R L ++FL R P P C + + HILL C
Sbjct: 496 LYQGLSK--RESALLVQMRTEKIGL-NDFLFNRRVPEVISPRCACGERRQTAAHILLRCG 552
Query: 430 KFRASRNK 437
++ R++
Sbjct: 553 IYKDLRDQ 560
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGS----KTAANSGCA 529
PW I T+EK N + + ++ L YTDGS +T A + C
Sbjct: 269 PWREGPATHIEATAEKARNRHDI---------ENDSGRCLSIYTDGSGIDGETGAAAVCP 319
Query: 530 YITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLA 589
I ET + ++V+++EL I + L R R I + TD+++++ +
Sbjct: 320 LIQETRAVHMGATTVSTVYAAELQGISLALQIAEQYVERGGK--RRDIAVYTDNQAAIWS 377
Query: 590 LKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S +++ I ++ L+ V WIP+H+GI GN
Sbjct: 378 ITKAEGRSGAYILEEIARQVQRLQDKGRPVTVRWIPAHVGIPGN 421
>gi|12597214|dbj|BAB21511.1| TRAS3 [Bombyx mori]
Length = 1682
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/492 (23%), Positives = 194/492 (39%), Gaps = 81/492 (16%)
Query: 5 KAINILKVLNNK---TWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQ--SSLSKLNTVY 59
+AI + K L +WGL + ++ A + PI+ Y A ++ SA + +L V
Sbjct: 1246 RAIEVYKQLARAARASWGLHPEVIKLIYTATIEPIVLYAASVWVSAVAKLGVIKQLAAVQ 1305
Query: 60 HTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQL 119
+ + AYRT + S G PL+ R + + Y + QL
Sbjct: 1306 RGIAQKVCKAYRTVSLNSALILAGMLPLDLRVREAASLYEAK--------------KGQL 1351
Query: 120 GRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSS 179
LP + +E + F E P E + +I+ L ++
Sbjct: 1352 --------LPGLADAEIEQMTPFA----------EMPHPVERADLQIVCLEDQE------ 1387
Query: 180 VAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----TETESQVFKLYNENSVFSS 234
Q G + +TDGSK G A TET+++ L N +V+ +
Sbjct: 1388 --------QVDGNSDYDECIFTDGSKIGGKVGAALSIWKGDTETKTRKLALSNYCTVYQA 1439
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINEL 294
ELLA+ + + + ++S+ S + +DS S+L + N SP+ L I
Sbjct: 1440 ELLALCVATTEVRKSKSK-------SFGVYSDSMSALQTITNYDSPHPLAVEARQNIKAS 1492
Query: 295 KILNITVKFLWIPSHLGIAGNVQVDELAK----NSQNAPLLSMMTSEDLKSAIKKKLLSE 350
+ V WI +H G+ GN + D LAK NS+ P +K +++ L E
Sbjct: 1493 LLQGKAVTLHWIKAHAGLKGNERADGLAKEAAENSRKRPDYDRCPISFVKRSLRMTTLEE 1552
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL-LKREDP 409
W+ + + + D L+ K + I + ++ GH + K ++
Sbjct: 1553 WNRRYTTGETASVTKLFFPDALVAYRIVRKIQPSNI-LTQIMTGHGGFSEYLCRFKCKES 1611
Query: 410 PLCEWCN--VQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYK---------C 458
P C C+ V+ ++ H+L+EC F +R+ K D+ L H+ I C
Sbjct: 1612 PSC-ICDPAVKETVPHVLVECPIFAQARHDIEQKLDVKIGLDTLHEIIIDTNRNQFLKYC 1670
Query: 459 IIISAQVIKRDE 470
I I VIKR++
Sbjct: 1671 IAIIGIVIKRNK 1682
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 504 QFKGENQNSLFCYTDGSKTAANSGCAYI-----TETESQVFKLYNENSVFSSELLAIFML 558
Q G + +TDGSK G A TET+++ L N +V+ +ELLA+ +
Sbjct: 1388 QVDGNSDYDECIFTDGSKIGGKVGAALSIWKGDTETKTRKLALSNYCTVYQAELLALCVA 1447
Query: 559 LSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 618
+ + + S++ ++ DS+ S+L + N SP+ L I + V
Sbjct: 1448 TTEVRKSKSKSFGVYSDSM-------SALQTITNYDSPHPLAVEARQNIKASLLQGKAVT 1500
Query: 619 FLWIPSHLGIAGNVQVPFL 637
WI +H G+ GN + L
Sbjct: 1501 LHWIKAHAGLKGNERADGL 1519
>gi|425776684|gb|EKV14892.1| Reverse transcriptase, putative [Penicillium digitatum PHI26]
Length = 994
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/423 (25%), Positives = 183/423 (43%), Gaps = 44/423 (10%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSL------SKLNTVY 59
++ L+ L WG S + + ++ A + P M +GA + S ++L + ++
Sbjct: 560 SLQALRGLTGSAWGASLSSMRTIYQAVMIPQMLFGAAAWHSPLTTTLRERSYVKQFASIQ 619
Query: 60 HTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQL 119
A ISGA++T+ E+L E P++ + L+ R++ P+ + + +
Sbjct: 620 ARAACPISGAFKTTAREALDVELHLLPMQQQLDRLVRLAAIRIRTGPAYAIPKTMLRERS 679
Query: 120 GRNINRAN-LPRTVKSRLED---LQIFDRISAQVIKRDEYI-APWELSVPEIIYLTSEKK 174
R P +S + I D + + R YI APW S P +++ E++
Sbjct: 680 KTQRQRGGWTPMEAQSWKKGGCLTAIPDALPREWESRKAYIQAPW--SKPPKVHI--EER 735
Query: 175 ENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----TETESQVFKLYNEN 229
E +N + + + + + YTDGS G A + ES++ + +++
Sbjct: 736 EQ-----ARNTYDSIERQLRAPVRLYTDGSGYQGGIGAAVYPAYPSVQNESRLCNMGSDD 790
Query: 230 --SVFSSELLAIFMLLSHI-----CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH 282
+V+++EL AI M L I N R R +V I TD++++L A+KN P+
Sbjct: 791 DATVYAAELHAIEMALEVIQYQFTSNDDWRERLAERGAV-IFTDNQAALKAIKNPKMPSG 849
Query: 283 LV--NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK 340
V L ++ I V+ WIP+H GI GN VD LAK++ S + +
Sbjct: 850 QVYLEGSLRVLDWCSKSKIQVELRWIPAHEGIPGNEHVDMLAKSAATTTDTSNYHNRSTR 909
Query: 341 SA------IKKKLLSEWHLHW-KNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--VICRL 391
A IK + + W W K I + RR+ E S+ K RK V+ +L
Sbjct: 910 LAAAASKCIKHESMIAWEKSWSKGGRIARRTRRLVEAPNKTNLSYWKGLRKATTSVLIQL 969
Query: 392 RIG 394
R G
Sbjct: 970 RTG 972
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 23/184 (12%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
R YI APW S P +++ E++E +N + + + + + YTDGS
Sbjct: 716 RKAYIQAPW--SKPPKVHI--EEREQ-----ARNTYDSIERQLRAPVRLYTDGSGYQGGI 766
Query: 527 GCAYI-----TETESQVFKLYNEN--SVFSSELLAIFMLLSHI-YSTSSRTEYIFR---D 575
G A + ES++ + +++ +V+++EL AI M L I Y +S ++ R
Sbjct: 767 GAAVYPAYPSVQNESRLCNMGSDDDATVYAAELHAIEMALEVIQYQFTSNDDWRERLAER 826
Query: 576 SIFICTDSKSSLLALKNIMSPNHLV--NNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
I TD++++L A+KN P+ V L ++ I V+ WIP+H GI GN
Sbjct: 827 GAVIFTDNQAALKAIKNPKMPSGQVYLEGSLRVLDWCSKSKIQVELRWIPAHEGIPGNEH 886
Query: 634 VPFL 637
V L
Sbjct: 887 VDML 890
>gi|427783069|gb|JAA56986.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 481
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/456 (23%), Positives = 195/456 (42%), Gaps = 47/456 (10%)
Query: 2 KSLKAIN-ILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+ L AI+ + K L KTWG+S +L L+ + + Y + + ++++ L V
Sbjct: 3 QRLTAISQLFKFLCGKTWGMSVDAMLELYRSLFLGFLRYSLPVLTNTCKTNIRTLQAVQA 62
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETR--RKILLAN--YGTRVKCNPSNPVSLILTH 116
ALR+ G + +P E+ + P++T + L A+ + +R C+ H
Sbjct: 63 QALRVCLGLPKCAPTEATISIARDQPIQTHIVVEALRAHIRHFSRAHCH----------H 112
Query: 117 -AQLGRNINRANLPRTVKSRLEDLQI-FDRISAQVIKRDEYIAP-WELSVPEIIYLTSEK 173
A L RA+ T+ + L F S I +I P L+VP I K
Sbjct: 113 LATLPSERPRASYCATISNYAAHLPSGFSPASKPAIPPWCFIPPEVHLNVPGI-----RK 167
Query: 174 KENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVF 232
K LSS +K + + + + YTDGS T S A + ++ ++
Sbjct: 168 KSELSSPVLKQLSLILLHEKYADHVHVYTDGSTTLQRSSGAVVVPAKAITVSFKTDHPTT 227
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKIN 292
S+ + + +P+ R SVF +DSK++L +L + + + ++ ++
Sbjct: 228 STAAELAALRAALRVVNHEQPQ---RWSVF--SDSKAALQSLLSALR-HGPYEQLVFEVR 281
Query: 293 ELKILNIT----VKFLWIPSHLGIAGNVQVDELAKNS------QNAPLLSMMTSEDLKSA 342
L +I VKF W+PSH G+ GN D A+++ + PL + L+
Sbjct: 282 YLLHTSIEKGHHVKFQWLPSHCGVIGNEHADNAARSALQGDTLETIPLSRTDAARQLRVV 341
Query: 343 IKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICR--LRIGHSHLTH 400
+K S W+ + + N+ +TL ++ R ++CR LR+ + +
Sbjct: 342 AQKITFSTWN---TASRLRNQHHHCP-NTLRLQTPTGLRRNDATLLCRLWLRVAFTK-SF 396
Query: 401 NFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+F ++ D P CE C + +++HI +C ++ R
Sbjct: 397 SFRIEMADNPFCEHCGSEETLRHIFCDCPRYNEQRT 432
>gi|427791639|gb|JAA61271.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1004
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 43/250 (17%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYG---------------- 45
K LK +NILK+L++ WG R CL+ L+ + VR +DYG V+Y
Sbjct: 758 KCLKTMNILKILSHTAWGSDRKCLMDLYKSLVRTRLDYGCVVYSSAAPSALKMLDPIHHL 817
Query: 46 --------------SATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRR 91
SA S+L L+ ++H +R+ +GA+RTSP+ESLY E+ + L+ +R
Sbjct: 818 GIRXXXXYGCVVYRSAAPSALKMLDPIHHLGIRLATGAFRTSPVESLYVESDEWSLDLQR 877
Query: 92 KILLANYGTRVKCNPSNPVSLI---LTHAQLGRNINRANLPRTVKSR-LEDLQIFDRISA 147
L Y V N +P L+ QL N P +++ R L + +
Sbjct: 878 SYLSFKYFLNVNSNADHPAYTAVNDLSSYQLFNNRPAVKEPFSLRVRALAEQAGVTLLEH 937
Query: 148 QVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFC---YTDGS 204
+++ PWE V + ++ ++ ++ F E Q+ C +TD S
Sbjct: 938 RLMPPALQAPPWEWQVIDCDTSFADVTKHAPPTHIQMYF----RELQHKYPCTEIFTDAS 993
Query: 205 KTAANSGCAY 214
K+ ++G +Y
Sbjct: 994 KS--HTGVSY 1001
>gi|427797513|gb|JAA64208.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1216
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 107/458 (23%), Positives = 190/458 (41%), Gaps = 61/458 (13%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ A+ +L+ NK G+ R LL ++ +VRPI+++G V++ + L L +
Sbjct: 745 KAESALGLLRRFCNKNSGMRRDTLLMIYKLYVRPILEFGCVLFSGSAGYKLRPLILLERQ 804
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP---SNPVSLILTHAQ 118
ALR+ G + LY E PL+ R + L ++ P S V + +
Sbjct: 805 ALRLCLGLPKCVANSVLYLEARIIPLDARFRQLTVQTFLKLYDAPLSRSQTVFIKSPDSF 864
Query: 119 LGRNINRANLPRT--VKSRLEDLQIFDRISAQVIKRDEYIAPWEL-SVP-EIIY--LTSE 172
R R P+ V+S L +L + +++ P L S+P ++++ + +
Sbjct: 865 FRRPWPRYQRPQVIFVESLLSNLHV----------SLQHLTPLTLCSMPVDLVFDDIFPK 914
Query: 173 KKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVF--KLYNENS 230
+ L ++ N + TD ++ +G + + F +L +
Sbjct: 915 NAKLLPKHVLEGLLQDHLSHFPNYVVISTDATQNLQKAGVGIFSHQLNWSFALRLPDFTP 974
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFIC----TDSKSSLLALKNIMSPNHLVNN 286
++ +E LAI + L + + +S+ I D++ +C + +S LL + + P L
Sbjct: 975 IYLAEFLAITLALRKLSSQQSK-AIIISDALSVCIHLTSAKQSPLLRIFWSLVPRSLSE- 1032
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN------APLLSMMTSEDLK 340
V+FLW+P H GIA N D LA S N AP S +T+E K
Sbjct: 1033 --------------VRFLWVPGHAGIALNETADSLASASLNFPVVLVAPQFSFITAERFK 1078
Query: 341 SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTH 400
+ K+ LH + + R ++ W ++ R+ E+ + R L
Sbjct: 1079 RLLILKINETSLLH------SEEFRHLQ---FTWNTTKCLSRQCEVTLTSFRCRVPRL-- 1127
Query: 401 NFLLKRED---PPLCEWCNVQLSIQHILLECRKFRASR 435
N+ L + LC CN +I H LL CR+F + R
Sbjct: 1128 NYYLHKSGFSLTNLCAICNEPETIDHFLLTCRRFASLR 1165
>gi|154284844|ref|XP_001543217.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406858|gb|EDN02399.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1758
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 192/476 (40%), Gaps = 77/476 (16%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA------TQSSLSKLNTVYH 60
+N L+ L TWG + A L + A V P + Y ++ + T+ + L+ +
Sbjct: 1254 LNALRSLAGSTWGSALATLRLAYLAIVVPQITYACSVWHTPRGEVGLTKKMRTTLDRIQR 1313
Query: 61 TALRIISGAYRTSPIESLYAENGQPPL----ETRRKILLAN--YGTRVKCNPSNPVSLIL 114
RI+ GAYR + +L E PL E R N G+R + N S
Sbjct: 1314 EGARIVGGAYRAASGAALDVELFITPLRLQLEERAHDAALNILTGSRFQNEDGNSTSAWT 1373
Query: 115 THAQLGRNINRANLPRTVKSRLED---LQIFDRISAQVIKRDEY-IAPWELSVPEIIYLT 170
R + P + +RL + +++ + + + R + + PW + I
Sbjct: 1374 PPI-------RGDSPVSPLTRLYNSLVMKLGEGAVSHLESRIPFPVKPWWRAPTVTIMEG 1426
Query: 171 SEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFKLYNE 228
E E L + + A L YTDGS G A + + ++ L E
Sbjct: 1427 REAAERLHTHIISGA--------DPPLAVYTDGSDIHGKVGAAALAPSIHTQELAYLGKE 1478
Query: 229 NS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLV 284
S V+++ELL I M L+ I + R IF TD++++L AL+N S ++
Sbjct: 1479 TSTTVYAAELLGIHMGLNLILASGRRRAAIF-------TDNQAALKALQNPRRSSGQSIL 1531
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-----APLLSMMT--SE 337
I+ + + + V+F WIP+H GI GN D+LAK + M+T +E
Sbjct: 1532 RRIMDTLERVNSQGLQVEFYWIPAHQGIEGNELADKLAKEATGCRQQRGRRGRMITVNTE 1591
Query: 338 DL--------------KSAIKKKLLSEWHLHWKNNVINN---KLRRIKEDTLL-WKSSFD 379
D KS + ++ ++W W+N L T+L S
Sbjct: 1592 DTADTPDFLRHLISAAKSELHRQTQAQWERDWENESSGRATYALTPAPGPTVLRLHHSLH 1651
Query: 380 KDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLECRKF 431
K IV ++R G L FL R+ P LCE C +++H+LL C KF
Sbjct: 1652 KALSSTIV--QMRTGKIGL-REFLYIRKVPEITDTLCE-CGNNQTVRHVLLACPKF 1703
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 1412 VKPWWRAPTVTIMEGREAAERLHTHIISGA--------DPPLAVYTDGSDIHGKVGAAAL 1463
Query: 532 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
+ ++ L E S V+++ELL I M L+ I ++ R IF TD++++L
Sbjct: 1464 APSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASGRRRAAIF-------TDNQAAL 1516
Query: 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL+N S ++ I+ + + + V+F WIP+H GI GN
Sbjct: 1517 KALQNPRRSSGQSILRRIMDTLERVNSQGLQVEFYWIPAHQGIEGN 1562
>gi|443694031|gb|ELT95266.1| hypothetical protein CAPTEDRAFT_227918 [Capitella teleta]
Length = 574
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 305 WIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNK 363
W PSH+G+ GN + D LAK + + ++ + S D K + +W W + NK
Sbjct: 3 WCPSHVGVMGNERADLLAKEALSFTTCTIRIPSSDFKPITHEFFKEKWQEQWSSEQ-ENK 61
Query: 364 LRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCN 416
L I+ W S + RR+EIV+ R RIGHSHLTH +L++RE PP+C C
Sbjct: 62 LYSIQPTLGKWAKSSREIRREEIVLARARIGHSHLTHGYLVRREMPPVCIPCQ 114
>gi|542601|pir||S37765 hypothetical protein - fruit fly (Drosophila miranda) transposon
TRIM
Length = 426
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/318 (27%), Positives = 141/318 (44%), Gaps = 62/318 (19%)
Query: 28 LFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQP 85
L+ A +RPIM YG V++ A ++ L+KL+ V A I+G RT+P E+L
Sbjct: 9 LYTAIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAELCITGGLRTTPGEAL------- 61
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQ----- 140
+T +L PV L +G+ + R ++RL
Sbjct: 62 --DTVLDLL--------------PVDL------MGKKVATLAALRMREARLWKASAVGHS 99
Query: 141 -IFDRISAQVIKRDEYIAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
I R+ Q+ +R +Y P + LS P + + S + + NA +
Sbjct: 100 GILMRLP-QLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANA-----------VH 147
Query: 199 CYTDGSKTAAN-SGCAYITETE-SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYI 256
YTDGSK G Y +E E S F+L + SVF +E+ AI +S + R
Sbjct: 148 FYTDGSKLDGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSKLRL----- 202
Query: 257 FRDSVFIC--TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
D+ +C +DS++++ AL +I S + V + ++E+ + + +W+P H I G
Sbjct: 203 --DTHLVCVFSDSQAAIKALGSISSNSATVKDCRRSLHEIA-EQLDLFLIWVPGHRDIEG 259
Query: 315 NVQVDELAKNSQNAPLLS 332
N DELA+ PLLS
Sbjct: 260 NDAADELARQGTTIPLLS 277
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 24/173 (13%)
Query: 464 QVIKRDEYIAPWE-LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKT 522
Q+ +R +Y P + LS P + + S + + NA + YTDGSK
Sbjct: 107 QLPERTDYCIPSDHLSTPFQVSIPSREDWEMGEPGPANA-----------VHFYTDGSKL 155
Query: 523 AAN-SGCAYITETE-SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580
G Y +E E S F+L + SVF +E+ AI +S + + D+ +C
Sbjct: 156 DGRVGGGVYCSELEISHCFRLPDHCSVFQAEIEAIKEAISIVSK-------LRLDTHLVC 208
Query: 581 --TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+DS++++ AL +I S + V + ++E+ + + +W+P H I GN
Sbjct: 209 VFSDSQAAIKALGSISSNSATVKDCRRSLHEIA-EQLDLFLIWVPGHRDIEGN 260
>gi|427781803|gb|JAA56353.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 38/300 (12%)
Query: 158 PWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
PW L P++ KK +LSS A+K + ++ + YTDGS T S A
Sbjct: 124 PWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAV 183
Query: 215 I--TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL 272
I + ES F+ ++ + ++EL A+ L I E + S+F TDSK +L
Sbjct: 184 IFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDR-----EVPLKWSIF--TDSKPALQ 236
Query: 273 ALKNIM--SPNHLVNNILVKINEL------KILNITVKFLWIPSHLGIAGNVQVDELAKN 324
L+ + P + +L++I +L K +IT F W+P H GI GN D+ AKN
Sbjct: 237 CLRTALRRGPQ---DQLLLEIRQLYHQLTDKGHDIT--FQWLPGHCGITGNEHADDAAKN 291
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLL------SEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
+ ++ + +A K L S W+ + ++ +L R+ + L +
Sbjct: 292 AHENGVMEPIPLSRSDAAAKINTLAHDVARSMWN---TPSFLHTRLHRL-DPCLQFTVPS 347
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLK--REDPPLCEWCNVQLSIQHILLECRKFRASRN 436
R + V+CR+ +G S T+ F + D CE C +IQH+L EC ++ + R
Sbjct: 348 GLPRSETTVLCRMWLGVS-FTNAFACRIGWADSAACEHCGTDETIQHVLCECPQYSSQRQ 406
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 474 PWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
PW L P++ KK +LSS A+K + ++ + YTDGS T S A
Sbjct: 124 PWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAV 183
Query: 531 I--TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL 588
I + ES F+ ++ + ++EL A+ L I E + SIF TDSK +L
Sbjct: 184 IFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDR-----EVPLKWSIF--TDSKPALQ 236
Query: 589 ALKNIM--SPNHLVNNILVKINEL------KILNITVKFLWIPSHLGIAGN 631
L+ + P + +L++I +L K +IT F W+P H GI GN
Sbjct: 237 CLRTALRRGPQ---DQLLLEIRQLYHQLTDKGHDIT--FQWLPGHCGITGN 282
>gi|238508578|ref|XP_002385478.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
gi|220688370|gb|EED44723.1| reverse transcriptase, putative [Aspergillus flavus NRRL3357]
Length = 1312
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 103/472 (21%), Positives = 186/472 (39%), Gaps = 76/472 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY---------GAVIYGSATQSSL 52
K+ + LK + TWG + R++ A V P + Y G I S Q L
Sbjct: 817 KAHGTLAALKGIAGSTWGAPLRAMRRIYQAVVVPQLFYAAAAWYSPKGGQIVASINQKML 876
Query: 53 SKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP--SNPV 110
++ + A +ISGA+R + +L E P+ + + ++ R++ P + P
Sbjct: 877 AEFTQIQKQAALLISGAFRGTSAAALNVELYILPVHLQLQQVIEETAVRIRTGPELACPE 936
Query: 111 SLILTHAQLGRNINRANLPRTVKSRLED----LQIFDRISAQVIK--------RDEYI-A 157
S++ PRT + R ++ R + R YI A
Sbjct: 937 SVLR--------------PRTAQERRRSGWTPMEALSRKGGPLWPLGKKEWETRKPYILA 982
Query: 158 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKG--ENQNSLFCYTDGS----KTAANSG 211
PWE + +I + + A F + + + YTDGS + A++
Sbjct: 983 PWEPPMTTVI------------DSHEAALFYHRQYCARREGIAVYTDGSGLNGRIGASTV 1030
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
C ++ E++V++ EL I M L H +RP +F DS++++
Sbjct: 1031 CLSQGWKRNRTLGTEEESTVYAGELTGIRMAL-HRLRKETRPATVF-------VDSEAAI 1082
Query: 272 LALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAP 329
A++N P+ ++++ I + + V+ WIP+H+G+ GN DE A+
Sbjct: 1083 QAVQNPRRPSGQYILDQIYYIVRRYNMQG-RVQIRWIPAHIGVPGNEAADEAAREGTQKA 1141
Query: 330 LLSMMTSEDLKSAIKKKLLSEWHLHW---KNNVINNKLRRIKEDTL--LWKSSFDKDRRK 384
++ + K I++++ W W K +KL I + L+K +
Sbjct: 1142 GEAICLAAAAKRQIRRRIKDRWTREWKAEKTGRTTHKLVEIPNKRVLDLYKGL---PKPH 1198
Query: 385 EIVICRLRIGHSHLTHN-FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
+I ++R + L H F +K D + +HILL+C F R
Sbjct: 1199 ASIIIQMRTQRNGLKHFLFKIKVSDSDQYHCGQGSQTSRHILLQCPLFTDPR 1250
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 510 QNSLFCYTDGS----KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYST 565
+ + YTDGS + A++ C ++ E++V++ EL I M L H
Sbjct: 1009 REGIAVYTDGSGLNGRIGASTVCLSQGWKRNRTLGTEEESTVYAGELTGIRMAL-HRLRK 1067
Query: 566 SSRTEYIFRDSIFICTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIP 623
+R +F DS++++ A++N P+ ++++ I + + V+ WIP
Sbjct: 1068 ETRPATVF-------VDSEAAIQAVQNPRRPSGQYILDQIYYIVRRYNMQG-RVQIRWIP 1119
Query: 624 SHLGIAGN 631
+H+G+ GN
Sbjct: 1120 AHIGVPGN 1127
>gi|427779533|gb|JAA55218.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 136/300 (45%), Gaps = 38/300 (12%)
Query: 158 PWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
PW L P++ KK +LSS A+K + ++ + YTDGS T S A
Sbjct: 151 PWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAV 210
Query: 215 I--TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL 272
I + ES F+ ++ + ++EL A+ L I E + S+F TDSK +L
Sbjct: 211 IFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDR-----EVPLKWSIF--TDSKPALQ 263
Query: 273 ALKNIM--SPNHLVNNILVKINEL------KILNITVKFLWIPSHLGIAGNVQVDELAKN 324
L+ + P + +L++I +L K +IT F W+P H GI GN D+ AKN
Sbjct: 264 CLRTALRRGPQ---DQLLLEIRQLYHQLTDKGHDIT--FQWLPGHCGITGNEHADDAAKN 318
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLL------SEWHLHWKNNVINNKLRRIKEDTLLWKSSF 378
+ ++ + +A K L S W+ + ++ +L R+ + L +
Sbjct: 319 AHENGVMEPIPLSRSDAAAKINTLAHDVARSMWN---TPSFLHTRLHRL-DPCLQFTVPS 374
Query: 379 DKDRRKEIVICRLRIGHSHLTHNFLLK--REDPPLCEWCNVQLSIQHILLECRKFRASRN 436
R + V+CR+ +G S T+ F + D CE C +IQH+L EC ++ + R
Sbjct: 375 GLPRSETTVLCRMWLGVS-FTNAFACRIGWADSAACEHCGTDETIQHVLCECPQYSSQRQ 433
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 474 PWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAY 530
PW L P++ KK +LSS A+K + ++ + YTDGS T S A
Sbjct: 151 PWCLYRPQLRLTVPGIRKKADLSSPALKQLTLLMLHEQYKDHVKLYTDGSTTVGGSAGAV 210
Query: 531 I--TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL 588
I + ES F+ ++ + ++EL A+ L I E + SIF TDSK +L
Sbjct: 211 IFPAKAESIQFRTSHKTTSTAAELAALRSALRRIDR-----EVPLKWSIF--TDSKPALQ 263
Query: 589 ALKNIM--SPNHLVNNILVKINEL------KILNITVKFLWIPSHLGIAGN 631
L+ + P + +L++I +L K +IT F W+P H GI GN
Sbjct: 264 CLRTALRRGPQ---DQLLLEIRQLYHQLTDKGHDIT--FQWLPGHCGITGN 309
>gi|156052453|ref|XP_001592153.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980]
gi|154704172|gb|EDO03911.1| hypothetical protein SS1G_06392 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 852
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 108/465 (23%), Positives = 192/465 (41%), Gaps = 53/465 (11%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 322 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 381
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSLILTH-AQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ Q N+
Sbjct: 382 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKAPLIQYQANL 441
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 442 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 500
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS---- 230
+ + + N FK ++++ + YTD S T G I +S LY E S
Sbjct: 501 D--AAILHNII--FKHRDKDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGT 556
Query: 231 ---VFSSELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNN 286
V++ EL + + + + + F I +D+++ L LK N
Sbjct: 557 NQLVYNGELFGVTRAIEYASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQ 610
Query: 287 I-LVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK 344
I +K E ++ + W+P H + GN D+LAK + +S TS L
Sbjct: 611 IRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPISNETSFGLLGMTV 670
Query: 345 KKLLSEWHLHWKNNVINNKLRRIKEDT-----LLWKSS------FDKDRRKEIVICRLRI 393
K+ S+ W + + +LR + + WK R +L++
Sbjct: 671 KEYASD---QWLDTLKQYELRSNQSPSTYSKLFPWKIGSKIKLPSGTTRNTASAFFQLKL 727
Query: 394 GHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
GH ++ H F L C N++ + QH+L+ C ++ R
Sbjct: 728 GHGYIKSYLHRFKLTNNK---CICSNIE-APQHLLISCPIYKTKR 768
>gi|427782325|gb|JAA56614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 1173
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 192/455 (42%), Gaps = 55/455 (12%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+ +++ ++ K+WG S++ LL+L+ A + Y A + S++ L ALRI
Sbjct: 700 VQVIRHMSGKSWGPSKSSLLQLYQALFVGYLRYSASVLSRVCTSAVRTLEGAQARALRIC 759
Query: 67 SGAYRTSPIESLYAEN---------GQPPLETRRKILLANYGTRVKCNPSNPVSLILTHA 117
G R + AE PL ++L TR + +P V ++
Sbjct: 760 LGVPRCTSTWGTIAEARACPARVYLQHEPLRVHLRLL-----TRHRVHPLRDVINTRPNS 814
Query: 118 QLGRNI--NRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + ++ +LP Q+ I + + LS+P I KK
Sbjct: 815 AYSQAVISHQDHLPSNYAP-----QVIPEIPLWTMPKPTV----RLSIPGIT-----KKS 860
Query: 176 NLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVF 232
+ + +K+ A + ++ + DGS T +S A+ ++ FK+ + S
Sbjct: 861 RIPTAGLKHFALSYITYMYRYTVHIFADGSVTQNSSAAAFTVPDMGVTKRFKITHRTSST 920
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM------SPNHLVNN 286
++EL + +H + +S + C DSK +L + N M SP LV
Sbjct: 921 AAELTGVRQA-AHFISQQSPATW-----TLFC-DSKPALQLIGNYMKQGTAYSP--LVYE 971
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ-NAPLLSMMTSE-DLKSAIK 344
I++ + E T+ WIPSH GIAGN Q D AK + ++S+ S D+ + +
Sbjct: 972 IMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEAKMAHTTGEVVSIHFSRYDINALLS 1031
Query: 345 KKLLSEWHLHWKN-NVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL 403
K + + W + + +L R+ + ++ R +E ++ RLR+G ++ T +L
Sbjct: 1032 KAIKTSMTRLWNDPDYRQERLYRL-DSGRAFRLPCRLRRDQETLLHRLRLGVAY-TRRYL 1089
Query: 404 LK--REDPPLCEWCNVQLSIQHILLECRKFRASRN 436
K +E P C C+ +I HIL C ++ R
Sbjct: 1090 CKIGQEQNPNCSVCHTSETIHHILCVCPQYATERQ 1124
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK + + +K+ A + ++ + DGS T +S A+
Sbjct: 850 RLSIPGIT-----KKSRIPTAGLKHFALSYITYMYRYTVHIFADGSVTQNSSAAAFTVPD 904
Query: 535 E--SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
++ FK+ + S ++EL + I S T +F DSK +L + N
Sbjct: 905 MGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLF-------CDSKPALQLIGN 957
Query: 593 IM------SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
M SP LV I++ + E T+ WIPSH GIAGN Q
Sbjct: 958 YMKQGTAYSP--LVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQA 1003
>gi|317157858|ref|XP_001826621.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1012
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 154/389 (39%), Gaps = 72/389 (18%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY---------GAVIYGSATQSSL 52
K+ + LK + TWG + R++ A + P + Y G I S Q L
Sbjct: 522 KAHGTLAALKGIAGSTWGAPLRAMRRIYQAVIVPQLFYAAAAWYSPKGGQIVASINQKML 581
Query: 53 SKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP--SNPV 110
++ + A +ISGA+R + +L E P+ + + ++ R++ P + P
Sbjct: 582 AEFTQIQKQAALLISGAFRGTSAAALNVELYILPVHLQLQQIIEETAVRIRTGPELACPE 641
Query: 111 SLILTHAQLGRNINRANLPRTVKSRLED----LQIFDRISAQVIK--------RDEYI-A 157
S++ PRTV+ R ++ R + R YI A
Sbjct: 642 SVL--------------RPRTVQERRRSGWTPMEALSRKGGPLWPLGKKEWETRKPYILA 687
Query: 158 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 217
PWE V +I S + + + + YTDGS G + +
Sbjct: 688 PWEPPVTTVI----------DSHEAALIYHRHYCARREGIAVYTDGSGLNGRVGASTVCL 737
Query: 218 TESQ----VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLA 273
++ E++V++ EL I M L H +RP +F DS++++ A
Sbjct: 738 SQGWKRNCTLGTEEESTVYAGELTGIRMAL-HRLRRETRPATVF-------VDSQAAIQA 789
Query: 274 LKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK-------- 323
++N P+ ++++ I I + N V+ WIP+H+G+ GN DE A+
Sbjct: 790 IQNPRRPSGQYILDQIYYIIRRYNMQN-RVQIHWIPAHIGVPGNEAADEAAREGATREGT 848
Query: 324 -NSQNAPLLSMMTSEDLKSAIKKKLLSEW 351
+ A L+ ++ +IK + + EW
Sbjct: 849 QQTGEAICLAAAAKRQIRRSIKDRWIREW 877
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
R YI APWE V +I S + + + + YTDGS
Sbjct: 681 RKPYILAPWEPPVTTVI----------DSHEAALIYHRHYCARREGIAVYTDGSGLNGRV 730
Query: 527 GCAYITETESQ----VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTD 582
G + + ++ E++V++ EL I M L H +R +F D
Sbjct: 731 GASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMAL-HRLRRETRPATVF-------VD 782
Query: 583 SKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S++++ A++N P+ ++++ I I + N V+ WIP+H+G+ GN
Sbjct: 783 SQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQN-RVQIHWIPAHIGVPGN 832
>gi|83775366|dbj|BAE65488.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1187
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 86/389 (22%), Positives = 154/389 (39%), Gaps = 72/389 (18%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY---------GAVIYGSATQSSL 52
K+ + LK + TWG + R++ A + P + Y G I S Q L
Sbjct: 697 KAHGTLAALKGIAGSTWGAPLRAMRRIYQAVIVPQLFYAAAAWYSPKGGQIVASINQKML 756
Query: 53 SKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP--SNPV 110
++ + A +ISGA+R + +L E P+ + + ++ R++ P + P
Sbjct: 757 AEFTQIQKQAALLISGAFRGTSAAALNVELYILPVHLQLQQIIEETAVRIRTGPELACPE 816
Query: 111 SLILTHAQLGRNINRANLPRTVKSRLED----LQIFDRISAQVIK--------RDEYI-A 157
S++ PRTV+ R ++ R + R YI A
Sbjct: 817 SVL--------------RPRTVQERRRSGWTPMEALSRKGGPLWPLGKKEWETRKPYILA 862
Query: 158 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 217
PWE V +I S + + + + YTDGS G + +
Sbjct: 863 PWEPPVTTVI----------DSHEAALIYHRHYCARREGIAVYTDGSGLNGRVGASTVCL 912
Query: 218 TESQ----VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLA 273
++ E++V++ EL I M L H +RP +F DS++++ A
Sbjct: 913 SQGWKRNCTLGTEEESTVYAGELTGIRMAL-HRLRRETRPATVF-------VDSQAAIQA 964
Query: 274 LKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK-------- 323
++N P+ ++++ I I + N V+ WIP+H+G+ GN DE A+
Sbjct: 965 IQNPRRPSGQYILDQIYYIIRRYNMQN-RVQIHWIPAHIGVPGNEAADEAAREGATREGT 1023
Query: 324 -NSQNAPLLSMMTSEDLKSAIKKKLLSEW 351
+ A L+ ++ +IK + + EW
Sbjct: 1024 QQTGEAICLAAAAKRQIRRSIKDRWIREW 1052
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 26/171 (15%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
R YI APWE V +I S + + + + YTDGS
Sbjct: 856 RKPYILAPWEPPVTTVI----------DSHEAALIYHRHYCARREGIAVYTDGSGLNGRV 905
Query: 527 GCAYITETESQ----VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTD 582
G + + ++ E++V++ EL I M L H +R +F D
Sbjct: 906 GASTVCLSQGWKRNCTLGTEEESTVYAGELTGIRMAL-HRLRRETRPATVF-------VD 957
Query: 583 SKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S++++ A++N P+ ++++ I I + N V+ WIP+H+G+ GN
Sbjct: 958 SQAAIQAIQNPRRPSGQYILDQIYYIIRRYNMQN-RVQIHWIPAHIGVPGN 1007
>gi|154274349|ref|XP_001538026.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415634|gb|EDN10987.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1838
Score = 82.4 bits (202), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/484 (24%), Positives = 187/484 (38%), Gaps = 88/484 (18%)
Query: 5 KAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA------TQSSLSKLNTV 58
+ +N L+ L TWG + L + + A V P + Y ++ + T+ + L+ +
Sbjct: 1334 QTLNALRSLAGSTWGSALVTLRQAYLAIVVPQITYACSVWHTPRGERGLTEKMRTTLDRI 1393
Query: 59 YHTALRIISGAYRTSPIESLYAENGQPPL----ETRRK-----ILLANY-------GTRV 102
RI+ GAYR + +L E PL E R IL N GT
Sbjct: 1394 QREGARIVGGAYRAASGAALDVELFIKPLRLQLEERAHDAALNILTDNRFQNEDDNGTSA 1453
Query: 103 KCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELS 162
P SLI +L ++ L S LE F + PW +
Sbjct: 1454 WTPPIRGDSLISPLTRLYNSLE-TTLGEGAVSHLESRIPFP------------VKPWWRA 1500
Query: 163 VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ES 220
I E E L + + A L YTDGS G A +
Sbjct: 1501 PTVTIAEDREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAALAPPIHTQ 1552
Query: 221 QVFKLYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM 278
++ L E + V+++ELL I M L+ I + R IF TD++++L AL+N
Sbjct: 1553 ELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAALRALQNPR 1605
Query: 279 --SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--------A 328
S ++ I+ + ++ + V+F WIP+H GI GN D+LAK +
Sbjct: 1606 RSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAKEATGCRQQRGRRG 1665
Query: 329 PLLSMMTSED-------------LKSAIKKKLLSEWHLHWKNNVINN---KLRRIKEDTL 372
++++ T + KS I ++ +W W+N L T+
Sbjct: 1666 RMITVDTDDTAATPDFLRHLISAAKSEIHRQTQVQWERDWENESSGRATYALTPAPSPTV 1725
Query: 373 L-WKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLE 427
L S K IV ++R G L FL +R+ P LCE +++H+LL
Sbjct: 1726 LHLHHSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQTVRHVLLA 1782
Query: 428 CRKF 431
C +F
Sbjct: 1783 CPRF 1786
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 1494 VKPWWRAPTVTIAEDREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 1545
Query: 532 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
++ L E + V+++ELL I M L+ I ++ R IF TD++++L
Sbjct: 1546 APPIHTQELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAAL 1598
Query: 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL+N S ++ I+ + ++ + V+F WIP+H GI GN
Sbjct: 1599 RALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGN 1644
>gi|156037406|ref|XP_001586430.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980]
gi|154697825|gb|EDN97563.1| hypothetical protein SS1G_12414 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 922
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 108/467 (23%), Positives = 193/467 (41%), Gaps = 53/467 (11%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 393 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 452
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ + Q N+
Sbjct: 453 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANL 512
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 513 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 571
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS---- 230
+ + + N FK ++++ + YTD S T G I +S LY E S
Sbjct: 572 D--AAILHNIV--FKHRDKDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGT 627
Query: 231 ---VFSSELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNN 286
V++ EL + + + + + F I +D+++ L LK N
Sbjct: 628 NQLVYNGELFGVTRAIEYASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQ 681
Query: 287 I-LVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK 344
I +K E ++ + W+P H + GN D+LAK + S TS L
Sbjct: 682 IRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTV 741
Query: 345 KKLLSEWHLHWKNNVINNKLRRIKEDT-----LLWKSS------FDKDRRKEIVICRLRI 393
K+ S+ W + + +LR + + WK R +L++
Sbjct: 742 KEYASD---QWLDTLKQYELRSNQSPSTYSKLFPWKIGSKIKLPSGTTRNTASAFFQLKL 798
Query: 394 GHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
GH ++ H F L C N++ + QH+L+ C ++ R +
Sbjct: 799 GHGYIKSYLHRFKLTNNK---CICSNIE-APQHLLISCPIYKTKRKE 841
>gi|156039948|ref|XP_001587081.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980]
gi|154696167|gb|EDN95905.1| hypothetical protein SS1G_12110 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1500
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 108/467 (23%), Positives = 193/467 (41%), Gaps = 53/467 (11%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 970 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 1029
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ + Q N+
Sbjct: 1030 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANL 1089
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 1090 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 1148
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS---- 230
+ + + N FK ++++ + YTD S T G I +S LY E S
Sbjct: 1149 D--AAILHNIV--FKHRDKDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGT 1204
Query: 231 ---VFSSELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNN 286
V++ EL + + + + + F I +D+++ L LK N
Sbjct: 1205 NQLVYNGELFGVTRAIEYASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQ 1258
Query: 287 I-LVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK 344
I +K E ++ + W+P H + GN D+LAK + S TS L
Sbjct: 1259 IRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTV 1318
Query: 345 KKLLSEWHLHWKNNVINNKLRRIKEDT-----LLWKSS------FDKDRRKEIVICRLRI 393
K+ S+ W + + +LR + + WK R +L++
Sbjct: 1319 KEYASD---QWLDTLKQYELRSNQSPSTYSKLFSWKIGSKIKLPSGTTRNTASAFFQLKL 1375
Query: 394 GHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
GH ++ H F L C N++ + QH+L+ C ++ R +
Sbjct: 1376 GHGYIKSYLHRFKLTNNK---CICSNIE-APQHLLISCPIYKTKRKE 1418
>gi|427792791|gb|JAA61847.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 650
Score = 82.0 bits (201), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 106/455 (23%), Positives = 192/455 (42%), Gaps = 55/455 (12%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+ +++ ++ K+WG S++ LL+L+ A + Y A + S++ L ALRI
Sbjct: 177 VQVIRHMSGKSWGPSKSSLLQLYQALFVGYLRYSAPVLSRICTSAVRTLEGAQARALRIC 236
Query: 67 SGAYRTSPIESLYAEN---------GQPPLETRRKILLANYGTRVKCNPSNPVSLILTHA 117
G R + AE PL ++L TR + +P V ++
Sbjct: 237 LGVPRCTSTWGTIAEARACPARVYLQHEPLRVHLRLL-----TRHRVHPLRDVINTRPNS 291
Query: 118 QLGRNI--NRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + ++ +LP Q+ I + + LS+P I KK
Sbjct: 292 AYSQAVISHQDHLPSNYAP-----QVIPEIPLWTMPKPTV----RLSIPGIT-----KKS 337
Query: 176 NLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVF 232
+ + +K+ A + ++ + DGS T +S A+ ++ FK+ + S
Sbjct: 338 RIPTAGLKHFALSYITYMYRYTVHIFADGSVTQNSSAAAFTVPDMGVTKRFKITHRTSST 397
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM------SPNHLVNN 286
++EL + +H + +S + C DSK +L + N M SP LV
Sbjct: 398 AAELTGVRQA-AHFISQQSPATW-----TLFC-DSKPALQLIGNYMKQGTAYSP--LVYE 448
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ-NAPLLSMMTSE-DLKSAIK 344
I++ + E T+ WIPSH GIAGN Q D AK + ++S+ S D+ + +
Sbjct: 449 IMIMLTEASQSGHTITLQWIPSHCGIAGNEQADAEAKMAHTTGEVVSIHFSRYDINALLS 508
Query: 345 KKLLSEWHLHWKN-NVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL 403
K + + W + + +L R+ + ++ R +E ++ RLR+G ++ T +L
Sbjct: 509 KAIKTSMTRLWNDPDYRQERLYRL-DSGRAFRLPCRLRRDQETLLHRLRLGVAY-TRRYL 566
Query: 404 LK--REDPPLCEWCNVQLSIQHILLECRKFRASRN 436
K +E P C C+ +I HIL C ++ R
Sbjct: 567 CKIGQEQNPNCSVCHTSETIHHILCVCPQYATERQ 601
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK + + +K+ A + ++ + DGS T +S A+
Sbjct: 327 RLSIPGIT-----KKSRIPTAGLKHFALSYITYMYRYTVHIFADGSVTQNSSAAAFTVPD 381
Query: 535 E--SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
++ FK+ + S ++EL + I S T +F DSK +L + N
Sbjct: 382 MGVTKRFKITHRTSSTAAELTGVRQAAHFISQQSPATWTLF-------CDSKPALQLIGN 434
Query: 593 IM------SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
M SP LV I++ + E T+ WIPSH GIAGN Q
Sbjct: 435 YMKQGTAYSP--LVYEIMIMLTEASQSGHTITLQWIPSHCGIAGNEQA 480
>gi|427778517|gb|JAA54710.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 468
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/296 (26%), Positives = 139/296 (46%), Gaps = 27/296 (9%)
Query: 156 IAPWELSVPEIIYLT---SEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSG 211
+ PW LS P + +LT +K +L + A+K + +N N + YTDGS T+ +SG
Sbjct: 134 LPPWCLSRPRV-HLTIPGVRRKSDLPTHALKQLSLLLQYDNYSNHVHIYTDGSTTSCSSG 192
Query: 212 CAYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKS 269
A + ++ FK + + ++EL A+ L I N+ RP + +VF +DSK
Sbjct: 193 GAVVIPSQGITLRFKTSHATTSTAAELAALRSALEFI-NSEERPS---KWAVF--SDSKP 246
Query: 270 SLLALKNIM--SPNHLVNNILVKINELKIL-NITVKFLWIPSHLGIAGNVQVDELAKNSQ 326
+L L +++ + + VK++ I + F W+P H GI+GN D A+ S
Sbjct: 247 ALQCLGSVLRRGCHDQLTYETVKLHHHVIQKGHDIDFQWLPGHCGISGNDSADNAARASH 306
Query: 327 NA------PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK 380
PL + ++ + L+EW+ N+ + +L ++ +L ++
Sbjct: 307 QEANIVPIPLSRTDAARQIRELARSLTLTEWN---APNIRHTRLHQLNP-SLQLRAPSGL 362
Query: 381 DRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
RR+ V+ RL +G + + L+ D C+ C +I+H+L C +F + R
Sbjct: 363 HRREASVLYRLWLGVAFTKAYTTLIGVTDSAACDVCGTDETIEHLLCHCPRFASER 418
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 472 IAPWELSVPEIIYLT---SEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSG 527
+ PW LS P + +LT +K +L + A+K + +N N + YTDGS T+ +SG
Sbjct: 134 LPPWCLSRPRV-HLTIPGVRRKSDLPTHALKQLSLLLQYDNYSNHVHIYTDGSTTSCSSG 192
Query: 528 CAYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585
A + ++ FK + + ++EL A+ L I S +++ ++F +DSK
Sbjct: 193 GAVVIPSQGITLRFKTSHATTSTAAELAALRSALEFINSEERPSKW----AVF--SDSKP 246
Query: 586 SLLALKNIM--SPNHLVNNILVKINELKIL-NITVKFLWIPSHLGIAGN 631
+L L +++ + + VK++ I + F W+P H GI+GN
Sbjct: 247 ALQCLGSVLRRGCHDQLTYETVKLHHHVIQKGHDIDFQWLPGHCGISGN 295
>gi|427782519|gb|JAA56711.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 137/296 (46%), Gaps = 36/296 (12%)
Query: 156 IAPWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 212
+ PW L+ P I KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 213 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270
A + ++ FK + + ++EL A+ + L I + R++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 271 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
AL++++SP LV I + + L + F W+PSH GI GN + D+ A++
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGNERADQAARS 296
Query: 325 SQNA------PLLSMMTSEDLKSAIKKKLLSEWH-LHWKNNVINNKLRRIKEDTLLWKSS 377
+ PL + L+ ++ +S+W+ H+KN + + + TL +
Sbjct: 297 AHTESSQILIPLSRTDAAWKLRVLARQCTVSQWNEPHFKNARLYS-----LDPTLSLRIP 351
Query: 378 FDKDRRKEIVICRLRIGHSHLTH--NFLLKREDPPLCEWCNVQLSIQHILLECRKF 431
R ++CRL +G + TH F + D C+ C+ +IQHIL EC ++
Sbjct: 352 PGLRRGDATLLCRLWLGVA-FTHAYAFRIGMADTAACDHCSGDETIQHILCECPQY 406
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 529 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
A + ++ FK + + ++EL A+ + L I ++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGN 287
>gi|242825810|ref|XP_002488515.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712333|gb|EED11759.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 488
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 25/226 (11%)
Query: 230 SVFSSELLAIFMLLS------HICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPN 281
S+ +EL+ ++ +S H +RP +++ I +DSKS++ A+KN S
Sbjct: 203 SIHIAELIGVYYAISLALKIFHQNGQSTRPGA--GEAITILSDSKSAIQAIKNPRNTSGQ 260
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSE 337
++ I EL I ++ WIP H GN D LAK + P ++ E
Sbjct: 261 RVIEAINQSAYELDSRGIPLRLQWIPGHCDDPGNDAADCLAKAAVGPTKIHPFCRPVSRE 320
Query: 338 DLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLR 392
K+AI++++L EW WK + LRRI DT L + R + ++ +LR
Sbjct: 321 --KAAIRRQILKEWEDEWKTSNKGTHLRRI--DTKLPAIRSRRLYQSLPRNRAYLLTQLR 376
Query: 393 IGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
GHS L TH L+ + CE C + ++ HIL++C + R +
Sbjct: 377 TGHSWLATHGKALRHREDDKCE-CGAKETVVHILIDCPRLTTERQR 421
>gi|156037302|ref|XP_001586378.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980]
gi|154697773|gb|EDN97511.1| hypothetical protein SS1G_12362 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 486
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 110/439 (25%), Positives = 185/439 (42%), Gaps = 52/439 (11%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I+DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIVDYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVK---SRLEDL-----Q 140
+ Y R +K +PS+PV+LI T A N + P+ + ++LE + +
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQRKQIKPTQLEKIKNSIQK 121
Query: 141 IFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCY 200
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++ Y
Sbjct: 122 DFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAAMIHNLAFKYRC--KNTITIY 176
Query: 201 TDGSKT-------------AANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIC 247
TD S T N +Y V +L V++ ELL + + +
Sbjct: 177 TDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-----VYNGELLGVTKAIEY-A 230
Query: 248 NTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKINE-LKILNITVKFLW 305
N+ ++P F+ I +D+++ L LK SP +K E ++ + W
Sbjct: 231 NSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISLNW 286
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
+P H + GN D LAK + P S TS K++ SE + N ++
Sbjct: 287 VPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENWIAILNTNNFHQPS 346
Query: 366 RIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPLCEWCN 416
WK S K IC +L+IGH + F + D C C
Sbjct: 347 STYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFKSYLKRFGISSNDN--CR-CG 403
Query: 417 VQLSIQHILLECRKFRASR 435
+ S H+LL C ++ +R
Sbjct: 404 GKESPDHLLLSCPLYKMAR 422
>gi|443734745|gb|ELU18611.1| hypothetical protein CAPTEDRAFT_216906 [Capitella teleta]
Length = 252
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 12/246 (4%)
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR-NINRANLPRTVKSRL-EDLQ-IF 142
P+ R+K+L + R + +NP + + R +++ N R + R+ EDLQ I
Sbjct: 2 PMAIRQKLLSVQFALRGCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTIC 61
Query: 143 DRISAQVIKRDEYIAPWELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCY 200
I A + I W L PE I + KK + ++N F+ + + +
Sbjct: 62 PDIKAITPNQLFNIPYWLLRPPELDISLIHFGKKTANPNYTLRNEFYNLMDKYPDHKVIF 121
Query: 201 TDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFRD 259
TDGSK+ + C+ + +L + S+FS+ELLAI+ +L+ + C+ + +++
Sbjct: 122 TDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL--- 178
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
I TDS SSL A+ N + V IL K L I + W PSH+G+ GN + D
Sbjct: 179 ---IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVGVMGNERAD 235
Query: 320 ELAKNS 325
LAK +
Sbjct: 236 LLAKEA 241
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 85/180 (47%), Gaps = 9/180 (5%)
Query: 475 WELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
W L PE I + KK + ++N F+ + + +TDGSK+ + C+
Sbjct: 78 WLLRPPELDISLIHFGKKTANPNYTLRNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATA 137
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ +L + S+FS+ELLAI+ +L+ + +++ + I TDS SSL A+ N
Sbjct: 138 DNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQ-----QFLIATDSLSSLQAIGN 192
Query: 593 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL--EILKSSYKYIQSD 650
+ V IL K L I + W PSH+G+ GN + L E L + I+SD
Sbjct: 193 FNIKHPYVFKILEKCTLLHKKGIYLVMAWCPSHVGVMGNERADLLAKEALSFTTCTIRSD 252
>gi|154276412|ref|XP_001539051.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414124|gb|EDN09489.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 377
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 24/257 (9%)
Query: 200 YTDGSKTAANSGCAYITETES-------QVFKLYNEN-SVFSSELLAIFMLLSHICNTRS 251
+TD +K + G A + ES QV ++ +V ++ELLAI+ L + + S
Sbjct: 67 FTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHS 126
Query: 252 R---PEYIFRDSVFICTDSKSSLLALKNIMS--PNHLVNNILVKINELKILNITVKFLWI 306
P R + I +DS+++L A+ N ++ NIL EL+ + + + W+
Sbjct: 127 SEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWV 186
Query: 307 PSHLGIAGNVQVDELAKNSQNA-PLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKL 364
P H GI GN D+LAK S N P + L+ A + EW W + L
Sbjct: 187 PGHSGIKGNEMADQLAKQSINPNPTHGFPKPASHLREASRNSTTQEWRDEWSSTAKGTHL 246
Query: 365 RRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHLTH-NFLLKREDPPLCEWCNVQ 418
R+I D L + R + ++ +LR GHS L +K D CE C +
Sbjct: 247 RKI--DAALPGRHARRLYATLPRPRARLLAQLRTGHSWLNEFRNRIKYADDNKCE-CGAK 303
Query: 419 LSIQHILLECRKFRASR 435
S+ H+L++C + + R
Sbjct: 304 ESVHHVLVDCPRLQQQR 320
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 516 YTDGSKTAANSGCAYITETES-------QVFKLYNEN-SVFSSELLAIFM---LLSHIYS 564
+TD +K + G A + ES QV ++ +V ++ELLAI+ L+ +S
Sbjct: 67 FTDAAKENSALGAAALIMDESYHIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHS 126
Query: 565 TSSRTEYIFRDSIFICTDSKSSLLALKNIMS--PNHLVNNILVKINELKILNITVKFLWI 622
+ R + I +DS+++L A+ N ++ NIL EL+ + + + W+
Sbjct: 127 SEGTPPPHQRHTYTILSDSRTALRAIANASKQVGGQIIQNILHTTKELRSIGVDLCLQWV 186
Query: 623 PSHLGIAGN 631
P H GI GN
Sbjct: 187 PGHSGIKGN 195
>gi|328697366|ref|XP_003240318.1| PREDICTED: hypothetical protein LOC100575042 [Acyrthosiphon pisum]
Length = 891
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 13/171 (7%)
Query: 202 DGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSV 261
D SK+ G A + + KL S+FS+E AIF + + NT + + +
Sbjct: 155 DASKSEHGVGFAVVKDDTIIQHKLPEITSIFSAENYAIFEGVK-LANT------LETNDI 207
Query: 262 FICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDEL 321
+ +DS S+LLA KN N + +NI + + K + F+W+PSH GI GN + D+
Sbjct: 208 LLISDSLSTLLAFKNTSPRNEITSNIQACLVQSKK---NIVFMWVPSHTGIIGNEKADKH 264
Query: 322 AKNSQNA---PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKE 369
A+ + P ++ ++S D+K++I +K+LS W +W + ++NKL+ IK+
Sbjct: 265 AEQATQTILNPTINNISSIDIKNSINQKILSSWQNYWNSITLSNKLKNIKK 315
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 52/85 (61%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRII 66
+N++K L++ T G ++ LL ++ + + + YG+ IY +A + L L+ +++ +R+
Sbjct: 29 MNVIKTLSHHTRGANQKPLLSIYKSLILSKIKYGSQIYNTAKPNLLKILDPIHNEGIRLA 88
Query: 67 SGAYRTSPIESLYAENGQPPLETRR 91
GA+RTS +S+ G+ PL+ +R
Sbjct: 89 IGAFRTSSTDSILNYAGELPLQLQR 113
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 14/116 (12%)
Query: 518 DGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIF--MLLSHIYSTSSRTEYIFRD 575
D SK+ G A + + KL S+FS+E AIF + L++ T +
Sbjct: 155 DASKSEHGVGFAVVKDDTIIQHKLPEITSIFSAENYAIFEGVKLANTLET---------N 205
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
I + +DS S+LLA KN N + +NI + + K + F+W+PSH GI GN
Sbjct: 206 DILLISDSLSTLLAFKNTSPRNEITSNIQACLVQSKK---NIVFMWVPSHTGIIGN 258
>gi|156050867|ref|XP_001591395.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980]
gi|154692421|gb|EDN92159.1| hypothetical protein SS1G_08021 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 107/439 (24%), Positives = 183/439 (41%), Gaps = 52/439 (11%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+LI T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAAMIHNLAFKYRC--KNTIA 174
Query: 199 CYTDGSKTAANSGCAYITE--------TESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
YTD S T G + + + V++ ELL + + + N+
Sbjct: 175 IYTDASSTLEGIGIGIGIAVILPNGRISHQETINIGVNQLVYNGELLGVTKAIEY-ANSI 233
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNIL----VKINE-LKILNITVKFLW 305
++P F+ I +D+++ L LK +P+ L +K+ E ++ + W
Sbjct: 234 AQPGNKFK----IYSDNQAGLFRLK---TPSDLPGQSCLIKAIKVAEAIQNKGAEISLNW 286
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
+P H + GN D LAK + P S TS K++ SE + N ++
Sbjct: 287 VPGHTSVQGNELADSLAKEATKIPSSSHETSYAFIGMDIKRMKSENWIAILNTNNFHQPS 346
Query: 366 RIKEDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPLCEWCN 416
WK S K IC +L+IGH + F + D C C
Sbjct: 347 STYSRNYPWKISSKIRVPGNIKRSTICAQFQLKIGHGYFKSYLKRFGISSNDS--CR-CG 403
Query: 417 VQLSIQHILLECRKFRASR 435
+ S H+LL C ++ R
Sbjct: 404 GKESPDHLLLNCPIYKTVR 422
>gi|321453153|gb|EFX64418.1| hypothetical protein DAPPUDRAFT_266424 [Daphnia pulex]
Length = 352
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 131/321 (40%), Gaps = 31/321 (9%)
Query: 136 LEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFF-QFKGENQ 194
L D+ +F Q E PW+ I Y K+ ++++ + A F Q K +
Sbjct: 6 LADIDLFQAEPEQYPHLQER-PPWKEPPIAIRYFPLSKQMSMNNPSEARALFNQIKHNHF 64
Query: 195 N-SLFCYTDGS--KTAANSGCAYITETES--QVFKLYNENSVFSSELLAIFMLLSHICNT 249
N S YTDGS K+ + A I + + + L +SVF+ E AI L +
Sbjct: 65 NASTIAYTDGSLNKSTGKTTSAVIIPSLNIEEATTLSRNSSVFTVEAEAINRTLELV--- 121
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH----LVNNILVKINELKILNITVKFLW 305
Y D V T S +++I SP ++N IL + LK + W
Sbjct: 122 -----YHLDDEVAKLTIFSDSRSVVQSIESPKKEKYPIINAILTTADNLKSAGTKINLYW 176
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEW-------HLHWKNN 358
IPSH+GI GN D LA N S L SA + + E+ LH K
Sbjct: 177 IPSHVGIPGNGAADRLASEESNQLFPSRSLKNFLSSAEQAAVFKEYLRKININELH-KGR 235
Query: 359 VINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL-LKREDPPLCEWC-N 416
+N R K L W S K R V+ +LR GH+ L N + P C++C +
Sbjct: 236 YKDNTHTRTKTGALKWHSH--KSRNITRVLFKLRTGHNRLKANLARFNNQLDPTCQFCED 293
Query: 417 VQLSIQHILLECRKFRASRNK 437
S +H+LLE F R +
Sbjct: 294 EDESKKHVLLEYPAFELERQE 314
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFF-QFKGENQN-SLFCYTDGS--KTAANSGCA 529
PW+ I Y K+ ++++ + A F Q K + N S YTDGS K+ + A
Sbjct: 27 PWKEPPIAIRYFPLSKQMSMNNPSEARALFNQIKHNHFNASTIAYTDGSLNKSTGKTTSA 86
Query: 530 YITETES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
I + + + L +SVF+ E AI L +Y + I +DS+S
Sbjct: 87 VIIPSLNIEEATTLSRNSSVFTVEAEAINRTLELVYHLDDEVA-----KLTIFSDSRS-- 139
Query: 588 LALKNIMSPNH----LVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+++I SP ++N IL + LK + WIPSH+GI GN
Sbjct: 140 -VVQSIESPKKEKYPIINAILTTADNLKSAGTKINLYWIPSHVGIPGN 186
>gi|154283453|ref|XP_001542522.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410702|gb|EDN06090.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1683
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 146/345 (42%), Gaps = 52/345 (15%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY----GSA--TQSSLSKLNTVYH 60
+N L+ L TWG + A L + A V P + Y ++ G A T+ + L+ +
Sbjct: 1246 LNALRSLAGSTWGSALATLRLAYLAIVVPQITYACSVWHTPRGEAGLTEKMRTTLDRIQR 1305
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
RI+ GAYR + +L E PL ++ L N ILT +Q
Sbjct: 1306 EGARIVGGAYRAASGAALDVELFMTPL----RLQLEERAHHAALN-------ILTGSQFQ 1354
Query: 121 RNIN----------RANLPRTVKSRLED---LQIFDRISAQVIKRDEY-IAPWELSVPEI 166
+ R + P + +RL + +++ + + + R + + PW +
Sbjct: 1355 NEDDNSTSAWTPPIRGDSPTSPLTRLYNSLVMKLGEGAVSHLESRIPFPVKPWWRAPTVT 1414
Query: 167 IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFK 224
I E E L + + A L YTDGS G A + + ++
Sbjct: 1415 ITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAALAPSIHTQELAY 1466
Query: 225 LYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP 280
L E S V+++ELL I M L+ I + R IF TD++++L AL+N S
Sbjct: 1467 LGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAALKALQNPRRSSG 1519
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
++ I+ ++ ++ + V+F WIP+H GI GN D LAK +
Sbjct: 1520 QSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGNELADNLAKEA 1564
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 1404 VKPWWRAPTVTITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 1455
Query: 532 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
+ ++ L E S V+++ELL I M L+ I ++ R IF TD++++L
Sbjct: 1456 APSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAAL 1508
Query: 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL+N S ++ I+ ++ ++ + V+F WIP+H GI GN
Sbjct: 1509 KALQNPRRSSGQSILRRIIDALDRVRSQGLQVEFYWIPAHQGIEGN 1554
>gi|427781947|gb|JAA56425.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 139/299 (46%), Gaps = 23/299 (7%)
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 218
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 219 ES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
+KL + ++ SEL A+ ++HI + + R +VF DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHI-----KEQPANRWAVFC--DSKAALQCLSS 240
Query: 277 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-APLLS 332
+ S LV I ++ + V F W+PSH GI+GN DE A+ + L+S
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVS 300
Query: 333 MMTSEDLKSAIKKKLLSEWHLH-WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRL 391
+ S + KL L W+ + ++ + +L + R ++ V+CRL
Sbjct: 301 IPLSRIDAARYLSKLAQNMTLQMWRTSQFTDQRLYSLDPSLRLRLLPGLSREEDTVLCRL 360
Query: 392 RIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLG 449
R+G + ++F ++ D C C V +I+HIL C + S + HL+ + L G
Sbjct: 361 RLGVAFTNAYSFKIEMADNAECNDCAVAETIEHILCNCPTY--SDERLHLRTALDHLDG 417
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 535 ES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+KL + ++ SEL A+ ++HI + +F DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVF-------CDSKAALQCLSS 240
Query: 593 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S LV I ++ + V F W+PSH GI+GN
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGN 282
>gi|358376676|dbj|GAA93209.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 378
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 230 SVFSSELLAIFMLLS---HICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLV 284
SV+++EL+AI+ + + R + I +DS S+L +KN S ++
Sbjct: 91 SVYTAELMAIYYAIRLGFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 150
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLK 340
I EL+ I ++ W+P H G GN D LAK + + P +++ E K
Sbjct: 151 QAIHQSAGELRARGIPLQLQWVPGHCGNPGNEAADRLAKATVGVKKRHPFRHLLSRE--K 208
Query: 341 SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGH 395
I+K + EWH W+ + LR I D L + + R + ++ +LR GH
Sbjct: 209 RYIRKNISDEWHQEWRASRNGGHLRCI--DRALPANRTRRLYGSLPRNQAYLLTQLRTGH 266
Query: 396 SHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK-----DDISALLG 449
S L TH + D CE C ++ H+L++C + R K ++IS +LG
Sbjct: 267 SWLATHGKQRRLRDDEKCE-CGATETVVHMLIDCPQLSGLRQALRRKIGGAFNNISDMLG 325
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 546 SVFSSELLAIFMLLS---HIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI--MSPNHLV 600
SV+++EL+AI+ + + + R+ + I +DS S+L +KN S ++
Sbjct: 91 SVYTAELMAIYYAIRLGFQLAQKNQRSRATDAEPATILSDSMSALQVIKNSWNKSGQRII 150
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGNVQV--------------PFLEILKSSYKY 646
I EL+ I ++ W+P H G GN PF +L +Y
Sbjct: 151 QAIHQSAGELRARGIPLQLQWVPGHCGNPGNEAADRLAKATVGVKKRHPFRHLLSREKRY 210
Query: 647 IQSD 650
I+ +
Sbjct: 211 IRKN 214
>gi|242825825|ref|XP_002488518.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712336|gb|EED11762.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 427
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 135/309 (43%), Gaps = 45/309 (14%)
Query: 157 APWELSV-PEI-IYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
APW+L EI I L EK A KNA +Q Y+D S + G A
Sbjct: 69 APWKLPAFKEININLDQEK-------ARKNAASLLTNPHQ---VVYSDASGHDNHLGAAA 118
Query: 215 ITETESQVFKLYNEN--------SVFSSELLAIFMLLS------HICNTRSRPEYIFRDS 260
+ +Q + + S+ +EL+ ++ +S H +RP ++
Sbjct: 119 VVLDRNQNIVVSRKTAIGPMAHWSIHIAELIGVYYAISLALKIFHQNGQSTRPGA--GEA 176
Query: 261 VFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
+ I +DSKS++ A+KN S ++ I EL I + WIP H GN
Sbjct: 177 ITILSDSKSAIQAIKNPRNTSGQRVIEAINQSAYELDSRGIPLHLQWIPGHCDNLGNDAA 236
Query: 319 DELAK----NSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLW 374
D LAK ++ P ++ E K+AI++++L EW WK + L+RI DT L
Sbjct: 237 DRLAKAAVGPTKTHPFCRPVSRE--KAAIQRQILKEWEDEWKTSNKGTHLQRI--DTKLP 292
Query: 375 KSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLEC 428
+ R + ++ +LR GHS L TH L+ + CE C + ++ HIL++C
Sbjct: 293 AIHSRRLYQSLPRNRAYLLTQLRTGHSWLATHGKALRHHEDNKCE-CGAKETVVHILIDC 351
Query: 429 RKFRASRNK 437
+ R +
Sbjct: 352 PRLTTERQR 360
>gi|427779633|gb|JAA55268.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 534
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 107/489 (21%), Positives = 201/489 (41%), Gaps = 71/489 (14%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++L+ L K+WG S +L+L+ M Y + G ++++ L ++ ALRI
Sbjct: 10 HVLRFLAGKSWGASVRAMLQLYTVLFLGFMRYSLPVLGRTRRTNVRVLQSIQAQALRICL 69
Query: 68 GAYRTSPIESLYAENGQPPLETRRKI----LLANYGTRVKCN--PSNPVS--------LI 113
G R + + A P+ T ++ + + R+ + S P S +I
Sbjct: 70 GLPRCASSAATVAIARDYPITTYIRVDALRMHIRHAARIPSHHLASLPTSRPHSAFSGII 129
Query: 114 LTH-AQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSE 172
+H + N A P L L+ I+ I+R + + L +++L +
Sbjct: 130 ASHCTAIPTNFTHAARPPLPLWCLHPLEAL--ITIPGIQRKKQSSNLALQQATLLFLHEK 187
Query: 173 KKENL----------------SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 216
L + K+ +FK + S T TA + ++
Sbjct: 188 HSGRLHIYTDGSVSSASSAGAVVIPEKSVTIKFKTSHLTS---STAAELTAIRAALEFVV 244
Query: 217 ETESQVFKLYNEN--------SVF----SSELLAIFMLLSHICNTRSRP---EYIFRDSV 261
+ Q + +++++ S F + +L+A +L H + ++I
Sbjct: 245 KEPPQAWSIFSDSKAALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHXW 304
Query: 262 FICTDSKSSLLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
I +DSK+ AL+ IMSP LV +I + + + + WIP H GI GN
Sbjct: 305 SIFSDSKA---ALQCIMSPFRRGPNEQLVADIRILHHRAVEKQHNIVYQWIPGHCGIYGN 361
Query: 316 VQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKE 369
+ DE A+++ +A PL + L+S ++ L++WH N +L +
Sbjct: 362 DRADEAARSAHDALHCAAIPLSRTDAATRLRSLARELTLAQWH---STEFTNARLHNLDP 418
Query: 370 DTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLEC 428
+ L S R +E ++CRL +G + ++F + P C+ C+ + +I H+L EC
Sbjct: 419 NLQLRLPS-GITRAEETLLCRLWLGVAFTNAYSFRIGMASSPTCDNCSCEETIAHLLCEC 477
Query: 429 RKFRASRNK 437
+F+A R +
Sbjct: 478 PRFKAPRKE 486
>gi|156046084|ref|XP_001589597.1| reverse transcriptase [Sclerotinia sclerotiorum 1980]
gi|154693714|gb|EDN93452.1| reverse transcriptase [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1708
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 164/381 (43%), Gaps = 35/381 (9%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 1223 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 1282
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ + Q N+
Sbjct: 1283 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANL 1342
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 1343 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 1401
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS---- 230
+ + + N F+++ ++++ + YTD S T G I +S LY E S
Sbjct: 1402 D--AAILHNIVFKYR--DKDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGT 1457
Query: 231 ---VFSSELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNN 286
V++ EL + + + + + F I +D+++ L LK N
Sbjct: 1458 NQLVYNGELFGVTRAIEYASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQ 1511
Query: 287 I-LVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK 344
I +K E ++ + W+P H + GN D+LAK + S TS L
Sbjct: 1512 IRAIKAAEVIRAKGAEISLNWVPDHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTV 1571
Query: 345 KKLLSEWHLHWKNNVINNKLR 365
K+ S+ W N + +LR
Sbjct: 1572 KEYASD---QWLNTLKQYELR 1589
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-IT 532
PW+ P + +++ KE+ + + N F+++ ++++ + YTD S T G I
Sbjct: 1384 PWKRETPFRVNISNSSKED--AAILHNIVFKYR--DKDTTYIYTDASSTEKGIGIGVGIV 1439
Query: 533 ETESQVFKLYNENS-------VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585
+S LY E S V++ EL + + + S+ + T F+ I +D+++
Sbjct: 1440 AIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEYA-SSIAYTGQKFK----IYSDNQA 1494
Query: 586 SLLALKNIMSPNHLVNNI-LVKINE-LKILNITVKFLWIPSHLGIAGN 631
L LK N I +K E ++ + W+P H + GN
Sbjct: 1495 GLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNWVPDHTSVEGN 1542
>gi|353244976|emb|CCA76093.1| hypothetical protein PIIN_10093 [Piriformospora indica DSM 11827]
Length = 1335
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 104/479 (21%), Positives = 187/479 (39%), Gaps = 46/479 (9%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
+ + A + L++L N GL+ + + L+ A V P + Y ++ + ++ L + +
Sbjct: 810 RGMAASSCLRMLANTVGGLNHSHVKTLYTACVLPAITYATPVWWTGKRTHTKALEKIQNQ 869
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKIL--LANYGTRVKCNPSNPVSLILTHAQL 119
LR I +RT+PI ++ E G PP+ R + A K + SN V L
Sbjct: 870 CLRRILPVFRTTPISAMEVEAGIPPIHLRLDHIYARAAARIAAKIDDSNLVYHRLPREYK 929
Query: 120 GR----NINRANLPRTVKSRLEDLQIFD---------RISAQVIKRDEYIAPWEL-SVPE 165
R NI LP T RL+ + I ++I + + PW + E
Sbjct: 930 RREATENIFTPPLPITPTRRLQRAPVLSPLRRLLSTIPIDIELISPNHLLDPWRPDGIDE 989
Query: 166 IIYLTSEKKENLSSVAVKNA------FFQFKGENQNSLFCYTDGSKTAAN----SGCAYI 215
+ + + + + A + N +L YTDGS+ N +G ++
Sbjct: 990 ALSRRLKACPGIQGTSKREAAEDHLKLTERLAANPGALAVYTDGSQINRNGHRLTGAGWV 1049
Query: 216 -----TETESQVFKLYNENSVFSSELLAIFMLLSHICN--TRSRPEYIFRDSVFICTDSK 268
E + L V+ +E+ A+ L N ++ + ++FI D+
Sbjct: 1050 LYWRGQERDHGSVGLGTSAEVYDAEMTALANGLKGAINFIHQTEDHHPKPTTIFIFADNS 1109
Query: 269 SSL--LALKNIMSPNHLVNNILVKINELKILN--ITVKFLWIPSHLGIAGNVQVDELAKN 324
S++ + + S + N ++ W+P H GI GN + DE+AK
Sbjct: 1110 SAVRSIPIARPFSSQDASQRFIEAARSFLEGNPRASIMIQWVPGHTGIPGNERADEIAKA 1169
Query: 325 SQN-APLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR---RIKEDTLLWKSSFDK 380
+ + AP T + + KL +W W + ++ R+ TL
Sbjct: 1170 ACSLAPPNPRTTLSNYLRTARNKLSEDWTNQWTSTDRRSRYAIADRLPPSTLGSYPFRQL 1229
Query: 381 DRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQ---HILLECRKFRASRN 436
DR ++ ++R GH + F R + P C +Q HILL+C +F +R+
Sbjct: 1230 DRATLGLVTQIRTGHGYFGEYF--ARFNIPEQTSCPCGFILQTREHILLDCPRFSEARH 1286
>gi|67537820|ref|XP_662684.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
gi|40740985|gb|EAA60175.1| hypothetical protein AN5080.2 [Aspergillus nidulans FGSC A4]
Length = 804
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 25/255 (9%)
Query: 200 YTDGSKTAANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY 255
YTDGS G A I + S +E++V+ +EL I + L I + +
Sbjct: 186 YTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQHAV 245
Query: 256 IFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
IF TD++++L AL+N S +++ I++ +N+ + + V F WIP+H G+
Sbjct: 246 IF-------TDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVE 298
Query: 314 GNVQVDELAKNSQN-APLLSMMTSEDLKSAIKKK----LLSEWHLHWKNNVINNKLRRIK 368
GN Q D AK + + ++SA+K++ + + W WK+ +L +
Sbjct: 299 GNEQADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEVVNARWENDWKSCHHGRELYELT 358
Query: 369 EDTL--LWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQ 422
+ + D R +I ++R G L H +L +R P + C+ S++
Sbjct: 359 PTPTRKVLRVHQDLHRALSTIIVQMRTGKIGLRH-YLYQRGVPDVPNSDCQCGRATQSVR 417
Query: 423 HILLECRKFRASRNK 437
HILL C F R +
Sbjct: 418 HILLACPTFSGLREE 432
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 516 YTDGSKTAANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEY 571
YTDGS G A I + S +E++V+ +EL I + L I +
Sbjct: 186 YTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQHAV 245
Query: 572 IFRDSIFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 629
IF TD++++L AL+N S +++ I++ +N+ + + V F WIP+H G+
Sbjct: 246 IF-------TDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVE 298
Query: 630 GNVQV 634
GN Q
Sbjct: 299 GNEQA 303
>gi|331236443|ref|XP_003330880.1| hypothetical protein PGTG_12417 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1101
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 115/466 (24%), Positives = 207/466 (44%), Gaps = 47/466 (10%)
Query: 1 IKSLKAINILKVLN-----NKTWGLSRACLLRLFYAFVRPIMDYGAVI-YGSATQSSLSK 54
+K +KA L + T+GL+ A +L + + + +G++I + +S++K
Sbjct: 597 LKKVKATGDLTICQLDRIVKSTYGLNTALARKLVISVLYSRVLFGSIIWFNKKNATSVAK 656
Query: 55 -LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLAN---YGTR-VKCNPSNP 109
L+ +YH A R+I+G +R +P+ + +G L ++ L N Y R + PS+P
Sbjct: 657 VLDGLYHRACRLITGLFRQTPLIFVRKSSG---LVAPTEVHLRNSHFYILRALTYPPSHP 713
Query: 110 VSLILTHAQLGRNINRANLPRTVKSRLE--DLQIFDRISAQVIKRDEYIAPWELSVPEII 167
V+ IL ++ +N+ P + + D F + + I R PW + EI
Sbjct: 714 VADIL---RIELTVNQPPFPSPIHLMMTPTDRYSFPKSLTETI-RPVPAPPWCQPISEIH 769
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQN-SLFCYTDGS-KTAANSGCAYITETESQ--VF 223
L ++ E + + Q + E QN +L +TDGS +G A +T + V
Sbjct: 770 NLLKKRAEAIQCIPN-----QLRQEVQNQTLVIFTDGSWLPGKGAGAAAVTHPSGRGCVA 824
Query: 224 KLYNENSV--FSSELLAIFM---LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM 278
L+ N++ F +EL+ + + + I + Y V I +D++S+L+ N +
Sbjct: 825 TLHPANTITNFEAELIGVRLAINMAQEILEADTENSYT---DVAIFSDNQSALMLSSNPI 881
Query: 279 SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA-PLLSMMTSE 337
S + + LK+L T++ W P H GI N + D LAK + PL + T+
Sbjct: 882 SLSPGQSIYTDNFFRLKLLRRTIRLFWCPGHEGITANERADSLAKKAAAGEPLPAGCTTL 941
Query: 338 DL---KSAIKKKLLSEWHLHWKNNVINNKLRRI---KEDTLLWKSSFDKDRRKEIVICRL 391
+ S K + + L + + RR K T L ++ +++ I +L
Sbjct: 942 SITVPNSLAKLRQSCKLSLKAPELLSDEDTRRFVFSKNCTKLLQALDTQEKGLAATILQL 1001
Query: 392 RIGHSHLTHNFLLKRED--PPLCEWCNVQLSIQHILLECRKFRASR 435
R + L +NFL K + P C C V + H L+ C ++R +R
Sbjct: 1002 RADTAPL-NNFLFKIKTILDPRCTECLVLENAAHFLMFCARYRKAR 1046
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQN-SLFCYTDGS-KTAANSGCAYI 531
PW + EI L ++ E + + Q + E QN +L +TDGS +G A +
Sbjct: 760 PWCQPISEIHNLLKKRAEAIQCIPN-----QLRQEVQNQTLVIFTDGSWLPGKGAGAAAV 814
Query: 532 TETESQ--VFKLYNENSV--FSSELLAIFMLLSHIYST-SSRTEYIFRDSIFICTDSKSS 586
T + V L+ N++ F +EL+ + + ++ + TE + D + I +D++S+
Sbjct: 815 THPSGRGCVATLHPANTITNFEAELIGVRLAINMAQEILEADTENSYTD-VAIFSDNQSA 873
Query: 587 LLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L+ N +S + + LK+L T++ W P H GI N
Sbjct: 874 LMLSSNPISLSPGQSIYTDNFFRLKLLRRTIRLFWCPGHEGITAN 918
>gi|212536828|ref|XP_002148570.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210070969|gb|EEA25059.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 1262
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 115/477 (24%), Positives = 205/477 (42%), Gaps = 65/477 (13%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---GSATQSSLS----K 54
K+ ++ L+ L TWG++ + R++ A V P M YGA + G+ TQ+ L+
Sbjct: 749 KAGTSLEALRGLAGSTWGVALGSMRRIYQAIVIPQMLYGAAAWFQPGNMTQAQLTIITRD 808
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSN--PVSL 112
T+ A +ISGA++T+ E+L E P+ + L+ R++ P + P +
Sbjct: 809 FATIQKRAACLISGAFKTTAAEALNIELHLLPIRYQLDQLVKATAIRIRTGPIHGIPRGM 868
Query: 113 ILTHA--QL---GRNINRANLPRTVKSRLEDLQIF-DRISAQVIKRDEYI-APWELSVPE 165
++ A QL G A+ +T LQ ++ + RD Y+ PW P
Sbjct: 869 LMRRADNQLVLGGYTPMEAHAWKTGGC----LQAPPGTLAGEWESRDAYVQPPWREPPPV 924
Query: 166 IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI----TETESQ 221
I E +V+ N + EN ++ YTDGS G + + + ++
Sbjct: 925 TI------DEREIAVSTHNRVLK---ENSRTMI-YTDGSGYQGYIGTSMVIPQFQQQMTE 974
Query: 222 VFKLYNENSVFSSELLAI---FMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN-- 276
+ ++V+++E I F L + +R + R ++F +DS+ +L AL+N
Sbjct: 975 CIGTEDTSTVYAAEACGIKFAFQTLLRFADDNAR---LRRVAIF--SDSQPALRALQNPR 1029
Query: 277 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTS 336
++S + + + E K NI + WIP H G+ GN D AK + +
Sbjct: 1030 MVSGQTYIRDCINLYWECKDNNIDIVIHWIPGHEGVPGNEAADRAAKRAAMMGARRQIVP 1089
Query: 337 EDLK------SAIKKKLLSE----WHLHW---KNNVINNKL-RRIKEDTLLWKSSFDKDR 382
D+K +A K+++ E W W K+ KL R + TL + S K
Sbjct: 1090 GDIKNWIMLGAAAKRRIRREAKNAWEKSWDKQKSGKPTKKLVPRPSKRTLQYWSYLRKAT 1149
Query: 383 RK---EIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+I R+ +GH + + + R + P C S++H++L+C + R+
Sbjct: 1150 SSILIQIRTERVALGH----YLWRINRRENPFCACGLSGQSVKHVILDCPLYADERD 1202
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 74/171 (43%), Gaps = 19/171 (11%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
RD Y+ PW P I E +V+ N + EN ++ YTDGS
Sbjct: 910 RDAYVQPPWREPPPVTI------DEREIAVSTHNRVLK---ENSRTMI-YTDGSGYQGYI 959
Query: 527 GCAYI----TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTD 582
G + + + ++ + ++V+++E I + + + R +IF +D
Sbjct: 960 GTSMVIPQFQQQMTECIGTEDTSTVYAAEACGIKFAFQTLLRFADDNARLRRVAIF--SD 1017
Query: 583 SKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S+ +L AL+N ++S + + + E K NI + WIP H G+ GN
Sbjct: 1018 SQPALRALQNPRMVSGQTYIRDCINLYWECKDNNIDIVIHWIPGHEGVPGN 1068
>gi|427791527|gb|JAA61215.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1298
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 212/527 (40%), Gaps = 114/527 (21%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K + +++LK + K WG S +L+L A ++ Y + + S++ L +V
Sbjct: 776 KLVSIVHVLKFIAGKRWGPSLTSMLQLHQALFIGLLRYSSPVLSKTCMSNIRALQSVQAQ 835
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR 121
+LR+ G R++ T ++LA PV+ +T L
Sbjct: 836 SLRVCLGLPRST--------------STAGTVILAR---------DYPVTTYITTDALRA 872
Query: 122 NINRANLPRTVKSRLEDLQIFDRISAQ---VIKRDEYIAP-------------WELSVPE 165
+I + R V S L L R A V+ + P W L PE
Sbjct: 873 HIRHTS--RMVSSHLPYLP-EKRPQASFSNVVSSHRALLPSGFTPSARSPSALWCLHQPE 929
Query: 166 IIYLTS--EKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITETES-- 220
+ KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 930 VRLSIPGIRKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPSRHIH 989
Query: 221 QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-- 278
+KL + ++ SEL A+ ++HI + +P R +VF DSK++L L + +
Sbjct: 990 LTYKLCHVSTSTGSELAALRGAVNHI---KEQPAN--RWAVFC--DSKAALQCLSSALRR 1042
Query: 279 -SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-APLLSMMTS 336
S LV I ++ + V F W+PSH GI+GN DE A+ + L+S+ S
Sbjct: 1043 GSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVSIPLS 1102
Query: 337 EDLKSAIKKKLLSEWHLH-WKNNVINN----------KLRRI-----KEDTLL------- 373
+ KL L W+ + + +LR + +EDT+L
Sbjct: 1103 RIDAARYLSKLAQNMTLQMWRTSQFTDQRLYSLDPSLRLRLLPGLSREEDTVLCRLRLGX 1162
Query: 374 -----------WKSSFDKDRR-------------------KEIVICRLRIGHSHL-THNF 402
W++S D+R ++ V+CRLR+G + ++F
Sbjct: 1163 XSXAQNMTLQMWRTSQFTDQRLYSLDPSLRLRLLPGLSREEDTVLCRLRLGVAFTNAYSF 1222
Query: 403 LLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLG 449
++ D C C V +I+HIL C + S + HL+ + L G
Sbjct: 1223 KIEMADNAECNDCAVAETIEHILCNCPTY--SDERLHLRTALDHLDG 1267
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 931 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 985
Query: 535 ES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+KL + ++ SEL A+ ++HI + +F DSK++L L +
Sbjct: 986 RHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVF-------CDSKAALQCLSS 1038
Query: 593 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S LV I ++ + V F W+PSH GI+GN
Sbjct: 1039 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGN 1080
>gi|427798201|gb|JAA64552.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1128
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 39/362 (10%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++LK KTWG+S + +L+L+ + Y +A+++SL L +V ALRI
Sbjct: 752 HLLKFFAGKTWGMSPSAMLQLYRVLFLGFLRYSLPALTNASKTSLRTLQSVQAQALRICL 811
Query: 68 GAYRTSPIESLYAENGQPPLETRRKI-LLANYGTRVKCNPSNPVSLILTHAQLGRNINRA 126
G ++ + A G + T + L + + P + + A L + RA
Sbjct: 812 GLPVSASTAASIAIAGDHLVTTHIDVEALRXHIRHLARTPRHHL------ASLPEDRPRA 865
Query: 127 NLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS--EKKENLSSVAVKN 184
+ +TV + E L +A+ + PW L+ P I KK ++SS A+K
Sbjct: 866 SFCQTVTAYRESLPTCFTPAAR-----PSVPPWCLTQPNISLAIPGIRKKADMSSPALKQ 920
Query: 185 -AFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSS--ELLAIFM 241
A + Q + YTDGS +S + + ++ K + S+ EL A+
Sbjct: 921 LALLMLYEKYQGCIHVYTDGSVLQNSSTASVVIPIKATTIKCKTCHLTTSTGAELTALRA 980
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKINELK 295
L I + R++ IF +DSK+ AL++++SP LV I + + L
Sbjct: 981 ALQFISDERAQKWTIF-------SDSKA---ALQSLLSPLRRGPHEQLVFEIAEETHHLT 1030
Query: 296 ILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLS 349
+ F W+PSH GI GN + D A+++ PL + L+ +++ S
Sbjct: 1031 EKGHELAFQWLPSHCGIIGNERADRAARSAHTENNEILIPLSRTDAARKLRMLARQRTTS 1090
Query: 350 EW 351
+W
Sbjct: 1091 QW 1092
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K A + Q + YTDGS +S
Sbjct: 890 VPPWCLTQPNISLAIPGIRKKADMSSPALKQLALLMLYEKYQGCIHVYTDGSVLQNSSTA 949
Query: 529 AYITETESQVFKLYNENSVFSS--ELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
+ + ++ K + S+ EL A+ L I ++ IF +DSK+
Sbjct: 950 SVVIPIKATTIKCKTCHLTTSTGAELTALRAALQFISDERAQKWTIF-------SDSKA- 1001
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 1002 --ALQSLLSPLRRGPHEQLVFEIAEETHHLTEKGHELAFQWLPSHCGIIGN 1050
>gi|259482037|tpe|CBF76131.1| TPA: hypothetical protein ANIA_10625 [Aspergillus nidulans FGSC A4]
Length = 486
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 25/255 (9%)
Query: 200 YTDGSKTAANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY 255
YTDGS G A I + S +E++V+ +EL I + L I + +
Sbjct: 186 YTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQHAV 245
Query: 256 IFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
IF TD++++L AL+N S +++ I++ +N+ + + V F WIP+H G+
Sbjct: 246 IF-------TDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVE 298
Query: 314 GNVQVDELAKNSQN-APLLSMMTSEDLKSAIKKK----LLSEWHLHWKNNVINNKLRRIK 368
GN Q D AK + + ++SA+K++ + + W WK+ +L +
Sbjct: 299 GNEQADRRAKEATGWRRIRGHRGRMTIRSAVKRRAHEVVNARWENDWKSCHHGRELYELT 358
Query: 369 EDTL--LWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQ 422
+ + D R +I ++R G L H +L +R P + C+ S++
Sbjct: 359 PTPTRKVLRVHQDLHRALSTIIVQMRTGKIGLRH-YLYQRGVPDVPNSDCQCGRATQSVR 417
Query: 423 HILLECRKFRASRNK 437
HILL C F R +
Sbjct: 418 HILLACPTFSGLREE 432
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 516 YTDGSKTAANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEY 571
YTDGS G A I + S +E++V+ +EL I + L I +
Sbjct: 186 YTDGSGINGRVGAAAICPKYLISRSSYMGQQSESTVYVAELQGILLALVIILQRQMQHAV 245
Query: 572 IFRDSIFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 629
IF TD++++L AL+N S +++ I++ +N+ + + V F WIP+H G+
Sbjct: 246 IF-------TDNQATLQALRNPGSQSGQYILEAIIMALNKGRKAGLNVHFRWIPAHRGVE 298
Query: 630 GNVQV 634
GN Q
Sbjct: 299 GNEQA 303
>gi|74835158|dbj|BAE44464.1| non-LTR retrotransposon CATS [Bombyx mori]
Length = 809
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 107/445 (24%), Positives = 176/445 (39%), Gaps = 76/445 (17%)
Query: 3 SLKAINILKVLNNKT---WGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSL--SKLNT 57
S KAI + L+ WGL+ L L+ A V PIM Y A + AT+ +LN+
Sbjct: 369 SKKAIGFYRRLSRVAKVHWGLNPEILRTLYNAVVEPIMLYAASAWAPATRKKCVRRRLNS 428
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHA 117
V ++ ++ AYRT + S G PL+ R + Y T+ ++
Sbjct: 429 VQRGFVQRMTKAYRTVSLNSTLLLAGVLPLDIRVREAAMLYETK-----RGHSQAVVGDR 483
Query: 118 QLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENL 177
+ R + ANL + KR EY S+ + L S +E
Sbjct: 484 GMERPVAFANLDHPARR----------------KRWEY-----RSLTDGAELESHIRECP 522
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-----ITETESQVFKLYNENSVF 232
S +TDGSK G A E +++ KL + +V+
Sbjct: 523 S--------------------IFTDGSKIEGRVGAALSIWEGTGEIKTKKLKLGSYCTVY 562
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKIN 292
+ELLA+ + + + IF D++S+L + + S + L I +
Sbjct: 563 QAELLALLKATEEVLSGGAATYNIF-------CDARSTLDVIASGESLHPLAFKITKNLK 615
Query: 293 ELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLL 348
+ N ++ WI +H+G+ GN + D LAK + + P K I++ +
Sbjct: 616 TITERNQEIRLFWIKAHIGLEGNERADVLAKEAALSLKCKPHYDRCPVSFAKRTIRQGSV 675
Query: 349 SEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--VICRLRIGHSHLT---HNFL 403
EW L + + + + KSS+ RR E+ + ++ GH L+ H F
Sbjct: 676 DEWDLRYTTESTASVTKIFFPNV---KSSYSIIRRLEVDSTLTQVFTGHGGLSQYLHRFR 732
Query: 404 LKREDPPLCEWCNVQLSIQHILLEC 428
K +C+ N Q SI H+L+EC
Sbjct: 733 CKESPACVCDPVN-QESIVHVLIEC 756
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 516 YTDGSKTAANSGCAY-----ITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
+TDGSK G A E +++ KL + +V+ +ELLA+ + S + T
Sbjct: 525 FTDGSKIEGRVGAALSIWEGTGEIKTKKLKLGSYCTVYQAELLALLKATEEVLSGGAATY 584
Query: 571 YIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 630
IF D++S+L + + S + L I + + N ++ WI +H+G+ G
Sbjct: 585 NIF-------CDARSTLDVIASGESLHPLAFKITKNLKTITERNQEIRLFWIKAHIGLEG 637
Query: 631 NVQVPFL 637
N + L
Sbjct: 638 NERADVL 644
>gi|427783937|gb|JAA57420.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 132/295 (44%), Gaps = 24/295 (8%)
Query: 156 IAPWELSVPEI--IYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGC 212
+ PW L P I +KK++LS+ A+K A F + +S YTDGS ++S
Sbjct: 127 VPPWCLKQPTINLTIPGVQKKQDLSAPALKQLALFLLDEKYHDSTHVYTDGSVLPSSSTA 186
Query: 213 AYITETESQVFKLYNENSVFSSELLAIFMLLS-HICNTRSRPEYIFRDSVFICTDSKSSL 271
A + T ++ KL + S+ + + H N + R + I DSK++L
Sbjct: 187 AVVIPTFARTIKLRKAHPTTSTAAEIAALRAALHFINDQMRKRWT------IFCDSKTAL 240
Query: 272 LALKNIM--SPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328
+L + + P+ LV ++ L + F W+PSH GI GN + D+ A+++
Sbjct: 241 QSLLSTLRRGPHEQLVFETAEMLHHLTEKGHHITFQWLPSHCGIIGNERADQAARSAHTE 300
Query: 329 ------PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDR 382
PL + L+ ++ S W+ + + ++ +L + + TL + R
Sbjct: 301 DRDLSIPLSRTDAARKLRMLARQYTTSNWN---EPHFMHPRLHCL-DPTLSLRIPPRLRR 356
Query: 383 RKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
V+CRL +G + + F + D CE C + +I+H+L +C K+ R
Sbjct: 357 GDATVLCRLWLGVAFTRAYAFRIGMADTAACEHCGNEETIRHVLCDCPKYTTQRQ 411
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 472 IAPWELSVPEI--IYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGC 528
+ PW L P I +KK++LS+ A+K A F + +S YTDGS ++S
Sbjct: 127 VPPWCLKQPTINLTIPGVQKKQDLSAPALKQLALFLLDEKYHDSTHVYTDGSVLPSSSTA 186
Query: 529 AYITETESQVFKLYNENSVFSSELLAIFMLLS-HIYSTSSRTEYIFRDSIFICTDSKSSL 587
A + T ++ KL + S+ + + H + R + +IF DSK++L
Sbjct: 187 AVVIPTFARTIKLRKAHPTTSTAAEIAALRAALHFINDQMRKRW----TIFC--DSKTAL 240
Query: 588 LALKNIM--SPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+L + + P+ LV ++ L + F W+PSH GI GN
Sbjct: 241 QSLLSTLRRGPHEQLVFETAEMLHHLTEKGHHITFQWLPSHCGIIGN 287
>gi|427784671|gb|JAA57787.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 434
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 37/317 (11%)
Query: 147 AQVIKRDEYIAP-------------WELSVPEIIYLTSE--KKENLSSVAVKNAFFQF-K 190
A I R E I P W LS PE+ KK + S +K F
Sbjct: 81 AAAISRHESIIPSGFAPAKVAEVPAWTLSRPEVRLSIPGVGKKSRIPSCGLKQLTLSFIS 140
Query: 191 GENQNSLFCYTDGSKTAANSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICN 248
+ +S +TDGS S A++ + S+ F+L + + ++E++AI ++ +I
Sbjct: 141 TKYASSTHVFTDGSVLPTTSTAAFVIPSLKTSERFRLDHRTTSTAAEIVAIREVIRYIST 200
Query: 249 TRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNI-TVKFLW 305
R IF DSK +L + + + P +L+ + + +++ + + + + W
Sbjct: 201 KPPRSWTIF-------CDSKPALQIIYSALRRGPYYLLAQEVAESHDVALKSGHRIGYQW 253
Query: 306 IPSHLGIAGNVQVDELAKNSQ-NAPLLSMMTSEDLKSAIKKKLLSEW-HLHWKNNVINNK 363
IP H G+ GN Q D AK + NA +L++ S +A+ LL E +W ++ +++
Sbjct: 254 IPGHCGLHGNEQADAEAKMAHDNAAILTIPFSRPDTNAVLYTLLRETTAAYW--SLPSHR 311
Query: 364 LRRIKE--DTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFL--LKREDPPLCEWCNVQL 419
RR+ E + + R ++ RLRIG + T +L + R D P CE C
Sbjct: 312 HRRLHELDPDMQIRLPPTMKRCSTSLLHRLRIGVA-FTRRYLHLIGRADSPNCEACGTPE 370
Query: 420 SIQHILLECRKFRASRN 436
+I+HIL C ++ RN
Sbjct: 371 TIEHILCVCPRYIVQRN 387
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 19/204 (9%)
Query: 439 HLKDDISALLGDDHDEIYKCIIISAQVIKRDEYIAPWELSVPEIIYLTSE--KKENLSSV 496
H D A H+ I A+V + + W LS PE+ KK + S
Sbjct: 74 HRPDSSLAAAISRHESIIPSGFAPAKVAE----VPAWTLSRPEVRLSIPGVGKKSRIPSC 129
Query: 497 AVKNAFFQF-KGENQNSLFCYTDGSKTAANSGCAYITET--ESQVFKLYNENSVFSSELL 553
+K F + +S +TDGS S A++ + S+ F+L + + ++E++
Sbjct: 130 GLKQLTLSFISTKYASSTHVFTDGSVLPTTSTAAFVIPSLKTSERFRLDHRTTSTAAEIV 189
Query: 554 AIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELK 611
AI ++ +I + R+ IF DSK +L + + + P +L+ + + +++
Sbjct: 190 AIREVIRYISTKPPRSWTIF-------CDSKPALQIIYSALRRGPYYLLAQEVAESHDVA 242
Query: 612 ILNI-TVKFLWIPSHLGIAGNVQV 634
+ + + + WIP H G+ GN Q
Sbjct: 243 LKSGHRIGYQWIPGHCGLHGNEQA 266
>gi|427797379|gb|JAA64141.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 544
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/474 (22%), Positives = 196/474 (41%), Gaps = 68/474 (14%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTV--------- 58
++++ L KTWG S +L+L+ A + Y + +A ++++ L ++
Sbjct: 43 HVMRFLAGKTWGTSVTAMLQLYRALFLGYLRYSTPVLSNAGKTNIRVLQSIQLYRALFLG 102
Query: 59 ---YHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILT 115
Y T ++S A +T+ I L + GQ AN + +P++ +T
Sbjct: 103 YLRYSTP--VLSNAGKTN-IRVLQSIQGQVLRTCLGLPRCANTVATIAIAKDHPITTYIT 159
Query: 116 HAQLGRNINRANLPRTVKSRLEDLQIFDRISA--QVIKRDEYIAPWELSVPEIIYLTSE- 172
L +I + R L L + +A +V+ +++ W S P I E
Sbjct: 160 VDTLRAHIR--YISRVPDHHLASLPLERPKAAFSRVVAANQHSISWRFS-PTTIPPCPEW 216
Query: 173 ---------------KKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 216
KK +LSS A+K + N + YTDGS + +++G A++
Sbjct: 217 CLQRPPVHLEVPGIYKKASLSSAALKQISLEHLHISYANRIHVYTDGSVSGSSTG-AFVV 275
Query: 217 ETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL 274
+ S FK + + SEL A+ + + IF DSK++L +
Sbjct: 276 PSRSITVKFKTSHVTTSTGSELAALLAAMKFVMQESPSKWAIF-------CDSKAALQCV 328
Query: 275 KNIMSPNHLVNNILVKINEL--KILNIT--VKFLWIPSHLGIAGNVQVDELAKNSQNA-- 328
+++ N+ + ++ +INE+ + N + F W+P H GI+GN D A+ + N
Sbjct: 329 RSLRRGNY--HQLVSQINEICDRATNQGHDIVFQWLPGHCGISGNHLADNAARCAHNETS 386
Query: 329 ----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIK--EDTLLWKSSFDKDR 382
PL + + +L+ L+ W N + RR + E L + R
Sbjct: 387 TLLIPLSRVDAARELRRIAHNATLTHW------NSPPHYTRRPQNLESLLQLQLPSKASR 440
Query: 383 RKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
R ++CRL +G + + ++ + D C+ CN +I H+L C ++ R
Sbjct: 441 RDATMLCRLWVGVAFTNSFSYRIGMADSSKCDNCNSAETIDHLLCHCPRYEQDR 494
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 22/165 (13%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
P L VP I KK +LSS A+K + N + YTDGS + +++G A++
Sbjct: 222 PVHLEVPGIY-----KKASLSSAALKQISLEHLHISYANRIHVYTDGSVSGSSTG-AFVV 275
Query: 533 ETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL 590
+ S FK + + SEL A+ + + S IF DSK++L +
Sbjct: 276 PSRSITVKFKTSHVTTSTGSELAALLAAMKFVMQESPSKWAIF-------CDSKAALQCV 328
Query: 591 KNIMSPNHLVNNILVKINEL--KILNIT--VKFLWIPSHLGIAGN 631
+++ N+ + ++ +INE+ + N + F W+P H GI+GN
Sbjct: 329 RSLRRGNY--HQLVSQINEICDRATNQGHDIVFQWLPGHCGISGN 371
>gi|407915369|gb|EKG09000.1| hypothetical protein MPH_14030 [Macrophomina phaseolina MS6]
Length = 606
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/476 (22%), Positives = 197/476 (41%), Gaps = 51/476 (10%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLS-------K 54
++ + L + TWG+ L +++ + + P + Y ++ + +Q S S
Sbjct: 102 RATTTLAALSSIAGSTWGIPTLGLRQIYRSIILPRILYCCSVWATGSQRSRSIEARLADT 161
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
+ + + A RII+GAY+ + +L E P K + RV P + L
Sbjct: 162 VEAIQYRAARIIAGAYKATSKAALDIELFLLPAAQIVKKHMGETLLRVASTPLYWQLIQL 221
Query: 115 THAQL-GRNINRANLPRTVKSRLEDL--QIFDRISAQVIKR-DEYIAPWELSVPEIIYLT 170
T R + N+ R+ R+ + + D + + +R + PW+ I +
Sbjct: 222 TERTWDSRKRDCPNM-RSPMLRIREYWNERLDGLLTNIEQRLPHFFPPWQKPADVCIAKS 280
Query: 171 SEKKENLSSVAVKNAFFQFKGENQNS--LFCYTDGSKTAANSGCAYITETESQVFKLY-- 226
E A +Q +++ L YTDGS + G A T T + Y
Sbjct: 281 REL-----------AIYQHDQTRKDTETLAIYTDGSAIDGHVGAAATTPTTNTRRTKYMG 329
Query: 227 --NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL--KNIMSPNH 282
+VF++EL I M L + + + I TD++++L AL S
Sbjct: 330 TVKSTTVFAAELQGIIMALELAGVETAHG----KQKIAIFTDNQAALRALVTPGQQSGQC 385
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK-------NSQNAPLLSMMT 335
L++ I+ ++ L+ ++V F WIP+H G+ GN + D LAK ++ L+ T
Sbjct: 386 LLSCIITELTGLQQKGVSVDFHWIPAHQGVPGNEEADRLAKVVAREGRALEHRTQLNTRT 445
Query: 336 S--EDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKD--RRKEIVICRL 391
S LK AI + ++ EW W++N +L ++ + + + R ++ ++
Sbjct: 446 SLVAALKQAINQAVMDEWKQTWRDNERGRQLFKLVPEPSRKILALHRGTPRAMSSLMVQM 505
Query: 392 RIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQHILLECRKFRASRNKWHLKDD 443
R G L H FL +R P + C+ ++ H+L C KF R + D+
Sbjct: 506 RTGKIGLRH-FLYQRRVPGVTSGECDCGRGLQTVSHVLYVCSKFNELRLTFRTPDE 560
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 508 ENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY----NENSVFSSELLAIFMLLSHIY 563
++ +L YTDGS + G A T T + Y +VF++EL I M L
Sbjct: 293 KDTETLAIYTDGSAIDGHVGAAATTPTTNTRRTKYMGTVKSTTVFAAELQGIIMALELAG 352
Query: 564 STSSRTEYIFRDSIFICTDSKSSLLAL--KNIMSPNHLVNNILVKINELKILNITVKFLW 621
++ + I I TD++++L AL S L++ I+ ++ L+ ++V F W
Sbjct: 353 VETAHG----KQKIAIFTDNQAALRALVTPGQQSGQCLLSCIITELTGLQQKGVSVDFHW 408
Query: 622 IPSHLGIAGN 631
IP+H G+ GN
Sbjct: 409 IPAHQGVPGN 418
>gi|427783061|gb|JAA56982.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 182/447 (40%), Gaps = 76/447 (17%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+L L+ A + Y + + +++L L ALR+ G + +P E+ A
Sbjct: 6 MLELYRALFLGFLRYSLPVLTNTCKTNLRILQAAQAQALRVCLGLPKCAPTEATIAIAKD 65
Query: 85 PPLETRRKILLANYGTRVKCNPSNPVSLILT------HAQLGRNINR--ANLPRTVKSRL 136
P++T I L V+ P + T A I+R ANLP
Sbjct: 66 QPIQT--HIALEALRAHVRHFARAPSHHLATLPSERPQASYCATISRYSANLP------- 116
Query: 137 EDLQIFDRISAQVIKRDEYIAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQF 189
S I PW LSVP I +KK LSS +K +
Sbjct: 117 ---------SGFSPAAKPPIPPWCLIRPAVHLSVPGI-----KKKAELSSPVLKQLSLRL 162
Query: 190 KGEN-QNSLFCYTDGSKTAANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHI 246
E + + YTDGS T +S A + FK + S ++EL A+ L +
Sbjct: 163 MHEKYTDHVHIYTDGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVL 222
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKF 303
R +P+ R S+F TDSK++L +L + + P LV I I+ V F
Sbjct: 223 --NREQPQ---RWSIF--TDSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTF 275
Query: 304 LWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSEWHLH--- 354
W+PSH G+ GN D A+++ PL + L+ I K +S+ LH
Sbjct: 276 QWLPSHCGVIGNEHADNAARSALQGDKEEVIPLSRSDAAAMLR--IVAKDISQPTLHTSR 333
Query: 355 ---WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICR--LRIGHSHLTHNFLLKREDP 409
++ + + N LRR T L RR+ ++CR LR+ + +++F + D
Sbjct: 334 SQNYRQHHL-NALRRFDIPTGL-------QRREATLLCRLWLRVAFTK-SYSFRIGMADN 384
Query: 410 PLCEWCNVQLSIQHILLECRKFRASRN 436
LC+ C + ++QHI +C ++ R
Sbjct: 385 ALCDVCGTEETLQHIFCDCPRYAVQRR 411
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 472 IAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTA 523
I PW LSVP I +KK LSS +K + E + + YTDGS T
Sbjct: 127 IPPWCLIRPAVHLSVPGI-----KKKAELSSPVLKQLSLRLMHEKYTDHVHIYTDGSTTI 181
Query: 524 ANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581
+S A + FK + S ++EL A+ L + E R SIF T
Sbjct: 182 RSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVL-----NREQPQRWSIF--T 234
Query: 582 DSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
DSK++L +L + + P LV I I+ V F W+PSH G+ GN
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGN 287
>gi|407920660|gb|EKG13846.1| hypothetical protein MPH_08978 [Macrophomina phaseolina MS6]
Length = 606
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 108/473 (22%), Positives = 196/473 (41%), Gaps = 45/473 (9%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLS-------K 54
++ K + L + TWG+ L +++ + + P Y ++ S S
Sbjct: 102 RATKTLTALSSIAGSTWGIPTLGLRQVYRSIILPRALYCCSVWALGKPRSKSIEARLADT 161
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
+ V + A R+I+GAYR + +L E P K + R+ P L
Sbjct: 162 VEAVQYRATRVIAGAYRATSKAALDVELFLLPAAQIIKKHMGEALLRIASTPLYRQLTQL 221
Query: 115 THAQLGRNINRANLPRTVKSRLEDL--QIFDRISAQVIKRDEY-IAPWELSVPEIIYLTS 171
T G + R R+ + + + + +R Y PW+ P + +
Sbjct: 222 TEHTWGSSKRDCPDIRNPILRIREYWNERLQGLLTNIEQRLPYSFPPWQ-KPPNVCI--A 278
Query: 172 EKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET----ESQVFKLYN 227
E +E +A+ A +++ ++ YTDGS + G A T +
Sbjct: 279 ESRE----LAI--ARHDHTRKDRETVAIYTDGSALDGHVGGAATAPTINARHTNYMGTIK 332
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL--KNIMSPNHLVN 285
+VF++EL I M L + + R +VF TD++++L AL + S +L+
Sbjct: 333 STTVFAAELRGIEMALDLAEAEAAHRKR--RIAVF--TDNQAALRALVTPSEQSGQYLLR 388
Query: 286 NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK-------NSQNAPLLSMMTS-- 336
+I+ K+ L+ + ++F W+PSH G+ GN + D LAK S++ L TS
Sbjct: 389 SIIAKLIGLQQQGVLIEFHWVPSHQGVPGNEEADRLAKAAALEGRASEHGTQLHARTSLV 448
Query: 337 EDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--VICRLRIG 394
LK I + + EW WK+ +L ++ + + + + + +I ++R G
Sbjct: 449 AALKQTISQAEMDEWKQLWKDGERGRQLFKVAPEPTRKILALHRGTLRTLGSLIVQMRTG 508
Query: 395 HSHLTHNFLLKREDPPLCEW---CNVQL-SIQHILLECRKFRASRNKWHLKDD 443
L H FL +R+ P + C L ++ H+L C KF S+ + D+
Sbjct: 509 KIGLRH-FLHQRKVPGVTSGECVCGRGLQTVSHVLYTCSKFSESQLAFRTPDE 560
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 508 ENQNSLFCYTDGSKTAANSGCAYITET----ESQVFKLYNENSVFSSELLAIFMLLSHIY 563
+++ ++ YTDGS + G A T + +VF++EL I M L
Sbjct: 293 KDRETVAIYTDGSALDGHVGGAATAPTINARHTNYMGTIKSTTVFAAELRGIEMALDLAE 352
Query: 564 STSSRTEYIFRDSIFICTDSKSSLLAL--KNIMSPNHLVNNILVKINELKILNITVKFLW 621
+ ++ + I + TD++++L AL + S +L+ +I+ K+ L+ + ++F W
Sbjct: 353 AEAAHR----KRRIAVFTDNQAALRALVTPSEQSGQYLLRSIIAKLIGLQQQGVLIEFHW 408
Query: 622 IPSHLGIAGN 631
+PSH G+ GN
Sbjct: 409 VPSHQGVPGN 418
>gi|427783065|gb|JAA56984.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 456
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 112/437 (25%), Positives = 186/437 (42%), Gaps = 56/437 (12%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+L L+ A + Y + + +++L L ALR+ G + +P E+ A
Sbjct: 6 MLELYRALFLGFLRYSLPVLTNTCKTNLRILQAAQAQALRVCLGLPKCAPTEATIAIAKD 65
Query: 85 PPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDR 144
P++T I L V+ P + T L +A+ T+ S +L
Sbjct: 66 QPIQT--HIALEALRAHVRHFARAPSHHLAT---LPSERPQASYCATISSYSANLPSGFS 120
Query: 145 ISAQVIKRDEYIAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN-QNS 196
+A+ I PW LSVP I +KK LSS +K + E +
Sbjct: 121 PAAK-----PSIPPWCLIRPAVHLSVPGI-----KKKSELSSPVLKQLSLRLLHEKYADH 170
Query: 197 LFCYTDGSKTAANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
+ YTDGS T +S A + FK + S ++EL A+ L + R +P+
Sbjct: 171 VHIYTDGSTTIRSSSGAVVIPARGVTVSFKTDHPTSSTAAELAALRTALCVL--NREQPQ 228
Query: 255 YIFRDSVFICTDSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLG 311
R S+F TDSK++L +L + + P LV I I+ F W+PSH G
Sbjct: 229 ---RWSIF--TDSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQATFQWLPSHCG 283
Query: 312 IAGNVQVDELAKNS--QNAPLLSMMTSEDLKSAIKKKLLSEWHLH------WKNNVINNK 363
+ GN D A+++ + PL + L+ I K +S+ LH ++ + +N
Sbjct: 284 VIGNEHADNAARSALEEVIPLSRSDAASMLR--IIAKDISQPTLHTSRSQNYRQHHLN-A 340
Query: 364 LRRIKEDTLLWKSSFDKDRRKEIVICRL--RIGHSHLTHNFLLKREDPPLCEWCNVQLSI 421
LRR T L RR+ ++CRL R+ + +++F + D LC+ C + ++
Sbjct: 341 LRRFHIPTGL-------HRREATLLCRLWLRVAFTK-SYSFRIGMADNALCDACGTEETL 392
Query: 422 QHILLECRKFRASRNKW 438
QHI +C ++ R +
Sbjct: 393 QHIFCDCPRYAVQRRSF 409
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 74/173 (42%), Gaps = 25/173 (14%)
Query: 472 IAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTA 523
I PW LSVP I +KK LSS +K + E + + YTDGS T
Sbjct: 127 IPPWCLIRPAVHLSVPGI-----KKKSELSSPVLKQLSLRLLHEKYADHVHIYTDGSTTI 181
Query: 524 ANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581
+S A + FK + S ++EL A+ L + E R SIF T
Sbjct: 182 RSSSGAVVIPARGVTVSFKTDHPTSSTAAELAALRTALCVL-----NREQPQRWSIF--T 234
Query: 582 DSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
DSK++L +L + + P LV I I+ F W+PSH G+ GN
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQATFQWLPSHCGVIGN 287
>gi|2708267|gb|AAB92394.1| putative reverse transcriptase [Drosophila subobscura]
Length = 675
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 143/331 (43%), Gaps = 54/331 (16%)
Query: 18 WGLSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSK-LNTVYHTALRIISGAYRTSPI 75
WG++ + ++ A VRPI+ YG ++ +A ++ +++K L+ V TA ISGA T+P
Sbjct: 248 WGMNPRIVQWIYLAIVRPILLYGVTVWWTALSKGTITKQLSKVQRTAALSISGALSTTPT 307
Query: 76 ESLYA--ENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQL--GRNINRANLPRT 131
++L A P L + + +A R + VS HA + G NI A
Sbjct: 308 DALNAILCLQSPELAGKEQAEMAAIRLR---DSDQWVSQRTGHASILNGNNIVPAKTDYC 364
Query: 132 VKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKG 191
V D P+E +P +N + +
Sbjct: 365 VPREYTD------------------TPFETIIPH-----------------RNDWLEGPP 389
Query: 192 ENQNSLFCYTDGSKTAANSGCAYITE--TESQVFKLYNENSVFSSELLAIFMLLSHICNT 249
+ ++ +TDGSK G +E S F+L + SVF +E++AI LS C
Sbjct: 390 GPKEAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIKEALS--CLQ 447
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 309
PE + + I +DS++++ +L I + + V N ++E+ + +W+P H
Sbjct: 448 ELTPEATY---INIYSDSQAAIKSLNAITTSSATVANCRKSLHEMA-YQFVISLIWVPGH 503
Query: 310 LGIAGNVQVDELAKNSQNAPLLSMMTSEDLK 340
I GN DELA+ PLL+ ED++
Sbjct: 504 QDIEGNCIADELARAGTTIPLLN--DKEDIR 532
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 499 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--TESQVFKLYNENSVFSSELLAIF 556
+N + + + ++ +TDGSK G +E S F+L + SVF +E++AI
Sbjct: 381 RNDWLEGPPGPKEAIQIFTDGSKLDNKVGGGIYSELLNISYSFRLPDHCSVFQAEVIAIK 440
Query: 557 MLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 616
LS + + Y I I +DS++++ +L I + + V N ++E+
Sbjct: 441 EALSCLQELTPEATY-----INIYSDSQAAIKSLNAITTSSATVANCRKSLHEMA-YQFV 494
Query: 617 VKFLWIPSHLGIAGN 631
+ +W+P H I GN
Sbjct: 495 ISLIWVPGHQDIEGN 509
>gi|427783063|gb|JAA56983.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 460
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 115/447 (25%), Positives = 182/447 (40%), Gaps = 76/447 (17%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+L L+ A + Y + + +++L L ALR+ G + +P E+ A
Sbjct: 6 MLELYRALFLGFLRYSLPVLTNTCKTNLRILQAAQAQALRVCLGLPKCAPTEATIAIAKD 65
Query: 85 PPLETRRKILLANYGTRVKCNPSNPVSLILT------HAQLGRNINR--ANLPRTVKSRL 136
P++T I L V+ P + T A I+R ANLP
Sbjct: 66 QPIQT--HIALEALRAHVRHFARAPSHHLATLPSERPQASYCATISRYSANLP------- 116
Query: 137 EDLQIFDRISAQVIKRDEYIAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQF 189
S I PW LSVP I +KK LSS +K +
Sbjct: 117 ---------SGFSPAAKPPIPPWCLIRPAVHLSVPGI-----KKKAELSSPVLKQLSLRL 162
Query: 190 KGEN-QNSLFCYTDGSKTAANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHI 246
E + + YTDGS T +S A + FK + S ++EL A+ L +
Sbjct: 163 MHEKYTDHVHIYTDGSTTIRSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVL 222
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKF 303
R +P+ R S+F TDSK++L +L + + P LV I I+ V F
Sbjct: 223 --NREQPQ---RWSIF--TDSKAALQSLLSALRHGPYEQLVFEIGHLIHTSSEKGHQVTF 275
Query: 304 LWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLSEWHLH--- 354
W+PSH G+ GN D A+++ PL + L+ I K +S+ LH
Sbjct: 276 QWLPSHCGVIGNEHADNAARSALQGDKEEVIPLSRSDAAAMLR--IVAKDISQPTLHTSR 333
Query: 355 ---WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICR--LRIGHSHLTHNFLLKREDP 409
++ + + N LRR T L RR+ ++CR LR+ + +++F + D
Sbjct: 334 SQNYRQHHL-NALRRFHIPTGL-------HRREATLLCRLWLRVAFTK-SYSFRIGMADN 384
Query: 410 PLCEWCNVQLSIQHILLECRKFRASRN 436
LC+ C + ++QHI +C ++ R
Sbjct: 385 ALCDACGTEETLQHIFCDCPRYAVQRR 411
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 75/173 (43%), Gaps = 25/173 (14%)
Query: 472 IAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTA 523
I PW LSVP I +KK LSS +K + E + + YTDGS T
Sbjct: 127 IPPWCLIRPAVHLSVPGI-----KKKAELSSPVLKQLSLRLMHEKYTDHVHIYTDGSTTI 181
Query: 524 ANSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581
+S A + FK + S ++EL A+ L + E R SIF T
Sbjct: 182 RSSSGAVVVPARGVTVSFKTDHPTSSTAAELAALRTALCVL-----NREQPQRWSIF--T 234
Query: 582 DSKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
DSK++L +L + + P LV I I+ V F W+PSH G+ GN
Sbjct: 235 DSKAALQSLLSALRHGPYEQLVFEIGHLIHTSSEKGHQVTFQWLPSHCGVIGN 287
>gi|156043557|ref|XP_001588335.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980]
gi|154695169|gb|EDN94907.1| hypothetical protein SS1G_10782 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 674
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 185/449 (41%), Gaps = 53/449 (11%)
Query: 24 CLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENG 83
L +L+ A V I DY +VI+ + ++ + ALR I G ++T+PI + E G
Sbjct: 163 ALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPIPPMEVEAG 222
Query: 84 QPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNINRANLPRTVKSRLEDL-- 139
P + R + Y R+ K +P++P+++ + Q N++ + PR + + L
Sbjct: 223 LKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANLDAISTPRRKRYKPTQLDK 282
Query: 140 ------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
Q F+ S + I + PW+ P + +++ KE+ + + N FK +
Sbjct: 283 IKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKED--AAILHNIV--FKHRD 337
Query: 194 QNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS-------VFSSELLAIFMLLSH 245
+++ + YTD S T G I +S LY E S V++ EL + + +
Sbjct: 338 KDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGTNQLVYNGELFGVTRAIEY 397
Query: 246 ICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNNI-LVKINE-LKILNITVK 302
+ + F I +D+++ L LK N I +K E ++ +
Sbjct: 398 ASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEIS 451
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
W+P H + GN D+LAK + S TS L K+ S+ W + +
Sbjct: 452 LNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTVKEYASD---QWLDTLKQY 508
Query: 363 KLRRIKEDT-----LLWKSS------FDKDRRKEIVICRLRIGHSHLT---HNFLLKRED 408
+LR + + WK R +L++GH ++ H F L
Sbjct: 509 ELRSNQSPSTYSKLFPWKIGSKIKLPSGTTRNTASAFFQLKLGHGYIKSYLHRFKLTNNK 568
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASRNK 437
C N++ + QH+L+ C ++ R +
Sbjct: 569 ---CICSNIE-APQHLLISCPIYKTKRKE 593
>gi|156060559|ref|XP_001596202.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980]
gi|154699826|gb|EDN99564.1| hypothetical protein SS1G_02418 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 106/436 (24%), Positives = 181/436 (41%), Gaps = 46/436 (10%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+L+ T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLVATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ V + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLEGI-HHFYFPPWKKEVLHKVNISKLGKE--EAAMIHNLAFKYRC--KNTII 174
Query: 199 CYTDGSKT----AANSGCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
YTD S T G A I + + + V++ ELL + + + N+
Sbjct: 175 IYTDASFTLEGIGVGIGIAVILPNGRISHQETINIDVNQLVYNGELLEVTKAIEY-TNSI 233
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKINE-LKILNITVKFLWIPS 308
++P F+ I +D+++ L LK P +K E ++ + W+P
Sbjct: 234 AQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKGAEISLNWVPG 289
Query: 309 HLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIK 368
H + GN D LAK + P S TS K++ SE + N ++
Sbjct: 290 HTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSENWIAILNTNNFHQPSSTY 349
Query: 369 EDTLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPLCEWCNVQL 419
WK S K IC +L+IGH + F + D C C +
Sbjct: 350 SRNYPWKISSKIRVPGNIKRSTICALFQLKIGHGYFKSYLKRFGISSNDN--CR-CGGKE 406
Query: 420 SIQHILLECRKFRASR 435
S H+LL C ++ +R
Sbjct: 407 SPDHLLLSCPLYKMAR 422
>gi|156057831|ref|XP_001594839.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980]
gi|154702432|gb|EDO02171.1| hypothetical protein SS1G_04647 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 110/444 (24%), Positives = 183/444 (41%), Gaps = 62/444 (13%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILEVFKTSPIKPMEIETALCPPEIR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+LI T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAAMIHNLAFKYRC--KNTIT 174
Query: 199 CYTDGSKT-------------AANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSH 245
YTD S T N +Y V +L V++ ELL + + +
Sbjct: 175 IYTDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-----VYNGELLGVTKAIEY 229
Query: 246 ICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKINE-LKILNITVKF 303
N+ ++P F+ I +D+++ L LK SP +K E ++ +
Sbjct: 230 -ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISL 284
Query: 304 LWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNK 363
W+P H + GN D LAK + P S TS K++ SE +W + N
Sbjct: 285 NWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDIKRMKSE---NWMAILNTNN 341
Query: 364 LRRIKED---TLLWKSSFD---KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPL 411
+ WK S K IC +L+IGH + F + D
Sbjct: 342 FHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGHGYFKSYLKRFGISSNDN-- 399
Query: 412 CEWCNVQLSIQHILLECRKFRASR 435
C C + S H+LL C ++ +R
Sbjct: 400 CR-CGGKESPDHLLLSCPLYKMAR 422
>gi|156041116|ref|XP_001587544.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980]
gi|154695920|gb|EDN95658.1| hypothetical protein SS1G_11537 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 145/333 (43%), Gaps = 44/333 (13%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+LI T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLIATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAAMIHNLAFKYRC--KNTIT 174
Query: 199 CYTDGSKT-------------AANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSH 245
YTD S T N +Y V +L V++ ELL + + +
Sbjct: 175 IYTDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-----VYNGELLGVTKAIEY 229
Query: 246 ICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKINE-LKILNITVKF 303
N+ ++P F+ I +D+++ L LK SP +K E ++ +
Sbjct: 230 -ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISL 284
Query: 304 LWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTS 336
W+P H + GN D LAK + P S TS
Sbjct: 285 NWVPGHTSVQGNELADSLAKEATKIPSSSHETS 317
>gi|328725948|ref|XP_003248683.1| PREDICTED: hypothetical protein LOC100573436 [Acyrthosiphon pisum]
Length = 118
Score = 76.6 bits (187), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 382 RRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK 441
R++E V+ RLRIGH+ +TH FL+ REDPP+C+ C L+++HI+ +C ++ R +
Sbjct: 29 RKEETVLNRLRIGHTRITHGFLMAREDPPICQTCETALTVKHIIADCLRYNQERADHTIS 88
Query: 442 DDISALLGDDHDEIYKCIIISAQ 464
+ ++ LG + D+I I + Q
Sbjct: 89 NHLNTALGPNQDKILDIINFTKQ 111
>gi|328697314|ref|XP_003240305.1| PREDICTED: hypothetical protein LOC100572200 [Acyrthosiphon pisum]
Length = 118
Score = 76.3 bits (186), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/83 (37%), Positives = 53/83 (63%)
Query: 382 RRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK 441
R++E V+ RLRIGH+ +TH FL+ REDPP+C+ C L+++HI+ +C ++ R +
Sbjct: 29 RKEETVLNRLRIGHTRITHGFLMAREDPPICQTCETALTVKHIIADCLRYNQERADHTIS 88
Query: 442 DDISALLGDDHDEIYKCIIISAQ 464
+ ++ LG + D+I I + Q
Sbjct: 89 NHLNTALGPNQDKILDIINFTKQ 111
>gi|425773855|gb|EKV12180.1| hypothetical protein PDIG_45050 [Penicillium digitatum PHI26]
gi|425780488|gb|EKV18494.1| hypothetical protein PDIG_08080 [Penicillium digitatum PHI26]
gi|425781625|gb|EKV19579.1| hypothetical protein PDIG_02180 [Penicillium digitatum PHI26]
Length = 1381
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 114/513 (22%), Positives = 205/513 (39%), Gaps = 76/513 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSL------SKL 55
K+ ++ L+ L TWG S + + ++ A + P M +GA + S S+L +
Sbjct: 777 KAGVSLQALRGLTGSTWGASLSAMRAIYQAVMIPQMLFGAAAWHSPLTSTLRERSYVKQF 836
Query: 56 NTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL- 114
+ A ++SGA++T+ E+L E P++ + L+ R++ P+ V +
Sbjct: 837 ANIQSRAACLMSGAFKTTAREALDIELHLLPMQQQLDRLVQLAAIRIRTGPAYAVPKTML 896
Query: 115 ---THAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYI-APWELSVPEIIYLT 170
H Q R +T K +++ R YI APW + P +Y+
Sbjct: 897 VERGHMQKQRGGYTPMEAQTWKKGGCLTTPLGPLASTWESRKAYIQAPW--TKPPRVYIE 954
Query: 171 S-EKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-----ETESQVFK 224
E+ N + + + YTDGS G A E+++
Sbjct: 955 ERERAINTHKRTTEQLYAPAR--------LYTDGSGYQGGIGAAVYPAYPYRRNEARLCN 1006
Query: 225 LYNEN--SVFSSELLAIFMLLSHICNTRSRPEYIFRD-----SVFICTDSKSSLLALKNI 277
+ ++ +V+++EL AI M L + R + +RD V I TD++++L A++N
Sbjct: 1007 MGTDDDATVYAAELRAIEMAL-EVIKERFNDDNEWRDCLAKSGVVIFTDNQATLRAIQNP 1065
Query: 278 MSPNHLVN-NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLL----- 331
P+ V +++ E I V+ W+P+H GI GN D AK +
Sbjct: 1066 RMPSGQVYLEGCLRLLEWCNDKIQVELRWVPAHEGIPGNEAADMYAKEAATTTETNIHDT 1125
Query: 332 ------------------------SMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRI 367
S+ + ++K++ W W RR
Sbjct: 1126 NANANTNANTNDNTNVNTNVNHNRSIRLAAAASKSVKRESTIAWEKAWTKGGSKRTARRT 1185
Query: 368 KEDTLLWKSS---FDKDRRKEI--VICRLRIGHSHLTHNF-LLKREDPPLCEWCNV-QLS 420
+ + S + K RK V+ +LR G L +KR D P C+ C++ S
Sbjct: 1186 RRMIEVPSKSNLTYWKGLRKATTSVLIQLRTGIIGLAEYLSKIKRSDSPRCQ-CDLGNQS 1244
Query: 421 IQHILLEC---RKFRASRNKWHLKDDISALLGD 450
++H+LLEC ++ R+ + + +S LG+
Sbjct: 1245 VKHVLLECPLLKELRSEMVEELFMEGVSTTLGE 1277
>gi|156064993|ref|XP_001598418.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980]
gi|154691366|gb|EDN91104.1| hypothetical protein SS1G_00507 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1477
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 32/341 (9%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 1112 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 1171
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ + Q N+
Sbjct: 1172 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANL 1231
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 1232 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 1290
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY-ITETESQVFKLYNENS---- 230
+ + + N FK ++++ + YTD S T G I +S LY E S
Sbjct: 1291 D--AAILHNIV--FKHRDKDTTYIYTDASSTEKGIGIGVGIVAIQSNNRILYQERSNIGT 1346
Query: 231 ---VFSSELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNN 286
V++ EL + + + + + F I +D+++ L LK N
Sbjct: 1347 NQLVYNGELFGVTRAIEYASSI------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQ 1400
Query: 287 I-LVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
I +K E ++ + W+P H + GN D+LAK +
Sbjct: 1401 IRAIKAAEVIRAKGAEISLNWVPGHTSVEGNELADKLAKEA 1441
>gi|156042792|ref|XP_001587953.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980]
gi|154695580|gb|EDN95318.1| hypothetical protein SS1G_11195 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 396
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 144/333 (43%), Gaps = 44/333 (13%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K PS+PV+LI T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKIPPSHPVNLIATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLERI-HHFYFPPWKKEVPYRVNISKLGKE--EAAMIHNLAFKYRC--KNTIT 174
Query: 199 CYTDGSKT-------------AANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSH 245
YTD S T N +Y V +L V++ ELL + + +
Sbjct: 175 IYTDASSTLEGIGVGIGIVVILPNGRNSYQETINIGVNQL-----VYNGELLGVTKAIEY 229
Query: 246 ICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKINE-LKILNITVKF 303
N+ ++P F+ I +D+++ L LK SP +K E ++ +
Sbjct: 230 -ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDSPGQSCQIKAIKAAEAIQNKGAEISL 284
Query: 304 LWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTS 336
W+P H + GN D LAK + P S TS
Sbjct: 285 NWVPGHTSVQGNELADSLAKEATKIPSSSHETS 317
>gi|156043837|ref|XP_001588475.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980]
gi|154695309|gb|EDN95047.1| hypothetical protein SS1G_10922 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 824
Score = 75.9 bits (185), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 107/456 (23%), Positives = 188/456 (41%), Gaps = 63/456 (13%)
Query: 6 AINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRI 65
A + + L N GLS L +L+ A V I DY +VI+ + ++ + ALR
Sbjct: 322 AFHRMARLANIEKGLSPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRK 381
Query: 66 ISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNI 123
I G ++T+PI + E G P + R + Y R+ K +P++P+++ + Q N+
Sbjct: 382 ILGVFKTAPIPPMEVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANL 441
Query: 124 NRANLPRTVKSRLEDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKE 175
+ + PR + + L Q F+ S + I + PW+ P + +++ KE
Sbjct: 442 DAISTPRRKRYKPTQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKE 500
Query: 176 NLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
+ + + N FK ++++ + YTD S T G E ++F + SS
Sbjct: 501 D--AAILHNIV--FKHRDKDTTYIYTDASSTEKGIGI------EVELFGVTRAIEYASS- 549
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNI-LVKINE- 293
I T + F+ I +D+++ L LK N I +K E
Sbjct: 550 ----------IAYTGQK----FK----IYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEV 591
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHL 353
++ + W+P H + GN D+LAK + S TS L I K+ S+
Sbjct: 592 IRAKGAEISLNWVPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMIVKEYASD--- 648
Query: 354 HWKNNVINNKLRRIKEDT-----LLWKSS------FDKDRRKEIVICRLRIGHSHLT--- 399
W + + +LR + + WK R +L++GH ++
Sbjct: 649 QWLDTLKQYELRSNQSPSTYSKLFPWKIGSKIKLPSGTTRNTASAFFQLKLGHGYIKSYL 708
Query: 400 HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
H+F L C N++ S QH+L+ C ++ R
Sbjct: 709 HHFKLTNNK---CICNNIEAS-QHLLISCPIYKTKR 740
>gi|427783055|gb|JAA56979.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 485
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 105/456 (23%), Positives = 186/456 (40%), Gaps = 43/456 (9%)
Query: 2 KSLKAI-NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+ L AI ++ K L KTWG+S +L L+ A + Y + + ++++ L V
Sbjct: 3 QRLTAISHLFKFLAGKTWGMSVDAMLELYRALFLGFLRYSLPVLSNTCKTNIRVLQAVQA 62
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLG 120
ALR+ G + + E+ A P++T I + + T V+ P + A L
Sbjct: 63 QALRVCLGLPKCTSTEATIAIARDHPMQT--HITVEDLRTHVRHFARAPCHHL---ATLP 117
Query: 121 RNINRANLPRTVKSRLEDLQIFDRI-SAQVIKRDEYIAPW-------ELSVPEIIYLTSE 172
+A+ + + ++ D++ S + PW LSVP I
Sbjct: 118 SERRQASFSKVI------VKYNDKLPSGFTTASKPSMPPWGLIRPTVHLSVPGI-----R 166
Query: 173 KKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSV 231
KK LSS +K E +S+ YTDGS S A + + ++
Sbjct: 167 KKSELSSPVLKQLSLLLLHERYADSVHIYTDGSTNLQFSSGAVVVPARAITISFRTDHPT 226
Query: 232 FSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SP-NHLVNNIL 288
S+ + + R P+ S+F +DSK++L ++ + + P LV I
Sbjct: 227 TSTAAELAALRAALCFVNREPPQQW---SIF--SDSKAALQSMLSALRRGPYEQLVFEIR 281
Query: 289 VKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS-------QNAPLLSMMTSEDLKS 341
++ V F W+PSH G+ GN D A+ + PL + L+
Sbjct: 282 GLLHASHEKGHHVTFQWLPSHCGVIGNEHADNAARAALEDTTQEDTIPLSRSDAASSLRG 341
Query: 342 AIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-TH 400
++ LS W NN+ + T L+ S + RR+ ++ RL +G + ++
Sbjct: 342 LAQEITLSLWCPPSTQTNRNNRQHHLSFLTHLYMPSGLR-RREATLLYRLWLGVAFTKSY 400
Query: 401 NFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+F + D LC+ C + +++HIL +C + R
Sbjct: 401 SFRIGMADSALCDVCRCEETLRHILCDCPVYNVQRQ 436
>gi|427791927|gb|JAA61415.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1045
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 116/284 (40%), Gaps = 27/284 (9%)
Query: 164 PEI-IYLTSEKKENLSSVAVKNAFF-QFKGENQNSLFCYTDGS---KTAANSGCAYITET 218
PE+ ++L K + A++ A + + + L +TDGS A + C
Sbjct: 737 PEVHLHLDGATKRGTPAAALRQAATCKLQELLEGRLQVFTDGSVMPDGTAAAACVVPARN 796
Query: 219 ESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM 278
S+ KL S ++EL + + + E I V + +DSKS+L L N
Sbjct: 797 SSRQCKLPFPASSTAAELAGLHLAADLLA------EEIPVQPVAVLSDSKSALQTLANPR 850
Query: 279 SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ--NAPLLSMMTS 336
+ + K L +V F W+PSH+GIAGN + D LAK + P + +
Sbjct: 851 RAGLTGSLLAAKYQALAASGASVSFHWLPSHVGIAGNEEADTLAKAAHQPGTPYTRAVAA 910
Query: 337 EDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG-- 394
D A K+LL +H + V N + ++ +T L RR + RLR G
Sbjct: 911 RDYTQARLKRLLLT--VHPDSRVANGRGPKLLPETGL-------SRRDRAALLRLRTGCV 961
Query: 395 -HSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
+ H L P C C +++H+L C R++
Sbjct: 962 WTAARRHAKGLCAS--PACSRCGDPETLEHLLCACPGLAQERSR 1003
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 11/157 (7%)
Query: 480 PEI-IYLTSEKKENLSSVAVKNAFF-QFKGENQNSLFCYTDGS---KTAANSGCAYITET 534
PE+ ++L K + A++ A + + + L +TDGS A + C
Sbjct: 737 PEVHLHLDGATKRGTPAAALRQAATCKLQELLEGRLQVFTDGSVMPDGTAAAACVVPARN 796
Query: 535 ESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIM 594
S+ KL S ++EL + + + E I + + +DSKS+L L N
Sbjct: 797 SSRQCKLPFPASSTAAELAGLHLAADLL------AEEIPVQPVAVLSDSKSALQTLANPR 850
Query: 595 SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ + K L +V F W+PSH+GIAGN
Sbjct: 851 RAGLTGSLLAAKYQALAASGASVSFHWLPSHVGIAGN 887
>gi|383864731|ref|XP_003707831.1| PREDICTED: protein toll-like [Megachile rotundata]
Length = 833
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 49/70 (70%)
Query: 382 RRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK 441
RR ++VI R+ IGH+ +TH +LL +E+PP+C+ C V +++ H++++C K+ A R K+ +K
Sbjct: 94 RRDQVVITRITIGHTRITHQYLLTKEEPPICDLCKVSVTVDHLIIQCAKYAADRQKYDIK 153
Query: 442 DDISALLGDD 451
+ L DD
Sbjct: 154 PAWNDNLKDD 163
>gi|270015744|gb|EFA12192.1| hypothetical protein TcasGA2_TC004345 [Tribolium castaneum]
Length = 879
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP 410
+ HW N KLR D W S K R +E+ I RLR+GH+ LT + LK+ DPP
Sbjct: 455 FQQHW--NQSTAKLREAYPDIKKWPPSNLK-RGEEVTINRLRLGHTRLTQEYHLKKVDPP 511
Query: 411 LCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGDDHDEIYK 457
C +C +L+++HILLEC K+ RN+ + + + +L ++ + K
Sbjct: 512 TCCYCEGRLTVRHILLECPKYHDIRNEANFPNRMEDILSPKNEAMIK 558
>gi|242775784|ref|XP_002478709.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218722328|gb|EED21746.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 991
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/464 (22%), Positives = 189/464 (40%), Gaps = 75/464 (16%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 477 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 536
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRNINRANLP 129
E P +A Y R+ P ++P + IL HAQ G P
Sbjct: 537 IREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQ------P 590
Query: 130 ---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWEL-SVPEIIYLTSEK 173
R SR D ++ +R+ AQ + RD E EL P I + +K
Sbjct: 591 LDDREWASR--DNKMLNRLGQRLAKHLAQRLNRDPSGGIERTEQCELQGFPGSIRVL-DK 647
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-------ETESQVFKLY 226
+E L+ + A F ++DGS+ A +T E +
Sbjct: 648 EEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPEGPWEHVEVPMG 697
Query: 227 NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LV 284
+ + VF +EL+ + L E +++ D+++++ L++ P LV
Sbjct: 698 HGHEVFDAELVGVATALEWAL------ERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALV 751
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKS 341
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++
Sbjct: 752 LRAHRAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRR 811
Query: 342 A---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRI 393
A ++ +SEW + N + + R R+ + W + + V R L+
Sbjct: 812 ACTEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKT 868
Query: 394 GHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
GH+ + T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 869 GHAPIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 912
>gi|242814698|ref|XP_002486420.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218714759|gb|EED14182.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 874
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 105/464 (22%), Positives = 190/464 (40%), Gaps = 75/464 (16%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 360 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWTQRIQILINKQARGITGMFPKTPIGAL 419
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRNINRANLP 129
E P +A Y R+ P ++P + IL HAQ G P
Sbjct: 420 IREAALEPATVLMDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQ------P 473
Query: 130 ---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWEL-SVPEIIYLTSEK 173
R SR D ++ +R+ AQ + RD E EL P I + +K
Sbjct: 474 LDDREWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTEQCELQGFPGSIRVL-DK 530
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-------ETESQVFKLY 226
+E L+ ++A F ++DGS+ A +T E +
Sbjct: 531 EEALTEANQQHAGTTF----------WSDGSRLDTGRAGAGVTLQAVPEGPWEHVEVPMG 580
Query: 227 NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LV 284
+ + VF +EL+ + L E +++ D+++++ L++ P LV
Sbjct: 581 HGHEVFDAELVGVATALKWAL------ERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALV 634
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKS 341
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++
Sbjct: 635 LRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRR 694
Query: 342 A---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRI 393
A ++ +SEW + N + + R R+ + W + + + R L+
Sbjct: 695 ACTEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKT 751
Query: 394 GHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
GH+ + T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 752 GHAPIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 795
>gi|358376861|dbj|GAA93349.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 362
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 29/309 (9%)
Query: 135 RLEDLQIFDRISAQVIKRDEYIAPWELSVP-EIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
RL+DL++ D + Q R E + +++ EI +E + S + V + +G
Sbjct: 5 RLDDLEMID-PAPQPPWRTEAFSKMDIATSREIAMEQAEAARSESDLVVYSVASGRQGHL 63
Query: 194 QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFM---LLSHICNTR 250
+ D S T + + QV + + SV ++EL+ I L++ I +
Sbjct: 64 GAAAAVLDDASITTGS--------LQIQVGPM-GQWSVHAAELIGILYAINLINRIVLQQ 114
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPS 308
R +V I +DS S+LLA++ S ++ IL + +T++ W+P
Sbjct: 115 RRAGQKRARTVTILSDSMSALLAIQKPGNKSGQQIIYAILQAAKNTRTHGVTIRLQWVPG 174
Query: 309 HLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKL 364
H I GN D LAK + + P +++ E ++ I++ +L++W WK + L
Sbjct: 175 HSEILGNDTADRLAKEAAIPGRTHPFSPLLSRE--RAYIRQGILTQWEKEWKESRDGGHL 232
Query: 365 RRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQL 419
R+I ++TL K + R + ++ ++R GH L T+ L D C C +
Sbjct: 233 RKI-DNTLPAKYTRRLYGSLPRNRAYLLTQIRSGHCWLSTYGKLFGFHDDDRC-LCGERE 290
Query: 420 SIQHILLEC 428
SI H+LL+C
Sbjct: 291 SILHVLLDC 299
>gi|242807844|ref|XP_002485040.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218715665|gb|EED15087.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 839
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 106/465 (22%), Positives = 188/465 (40%), Gaps = 75/465 (16%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 78 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 137
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRNINRANLP 129
E P +A Y R+ P ++P + IL HAQ G P
Sbjct: 138 IREAALEPATVLMDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQ------P 191
Query: 130 ---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWEL-SVPEIIYLTSEK 173
R SR D ++ +R+ AQ + RD E EL P I + +K
Sbjct: 192 LDDREWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTEQCELQGFPGSIRVL-DK 248
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-------ETESQVFKLY 226
+E L+ + A F ++DGS+ A +T E +
Sbjct: 249 EEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMG 298
Query: 227 NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LV 284
+ + VF +EL+ + L E +++ D+++++ L++ P LV
Sbjct: 299 HGHEVFDAELVGVATALEWAL------ERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALV 352
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKS 341
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++
Sbjct: 353 LRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRR 412
Query: 342 A---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRI 393
A ++ +SEW + N + + R R + W + + V R L+
Sbjct: 413 ACTEARRAAVSEWA---QINAVQGRHRDGRAYKMPRGWNLDPVAGKAPKRVASRYYQLKT 469
Query: 394 GHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASRN 436
GH+ + T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 470 GHAPIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGRR 514
>gi|407915499|gb|EKG09088.1| hypothetical protein MPH_13927 [Macrophomina phaseolina MS6]
Length = 549
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 108/471 (22%), Positives = 198/471 (42%), Gaps = 59/471 (12%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYG---SATQSSLSKLNT 57
+ K++ L + TWG+ L +++ + + P Y ++ + + +KL
Sbjct: 40 VNGTKSLAALTSIAGSTWGIPTLGLRQIYRSIILPRALYCCSVWALGNNVNKDIETKLKN 99
Query: 58 VYHT----ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
V A RII+GAYR + +L E P K + R+ +P
Sbjct: 100 VIERIQSRAARIIAGAYRATSKAALDIELFLLPAAQLIKKTMGEAFLRIASSPLFEEIAR 159
Query: 114 LTHAQLGRNINRANLPRTVKSRLE-----DLQIFDRISAQVIKRDEYIA-PWELSVPEII 167
LT + G + RA+ P T L ++ D +A + +R ++ PW P I
Sbjct: 160 LTEEKWGSH-KRAS-PTTSSPLLRIREQWKAKLGDENTANIERRLPHLFFPWWRPPPVEI 217
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY- 226
+ E +VA N Q + +N + YTDGS + G A I K Y
Sbjct: 218 AGSREL-----AVAQHN---QIR-DNTEGVLIYTDGSAVNGHVGAAAIAPGMCTSRKRYI 268
Query: 227 ---NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL--KNIMSPN 281
+V+++EL I M L I T + + I + S F TD++++L AL S
Sbjct: 269 GSTRCTTVYAAELQGIEMAL-EIAGT-AISQGITKFSAF--TDNQAALRALIHPGDHSGQ 324
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGN-------VQVDELAKNSQNAPLLSMM 334
++ ++++K+ +L + F WIP+H G+ GN + + ++ +
Sbjct: 325 QILASVILKLQQLWGAGASFDFHWIPAHQGVPGNESADALAKAAAQQGRTLESGDRATGP 384
Query: 335 TSED-----LKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTL-----LWKSSFDKDRRK 384
++D L+ +I + ++ EW W+ + +L ++ + L++S+ R
Sbjct: 385 RTQDSLIAALRQSIHQAVMEEWKKLWRESARGRQLFKVAPEPTRKSLELYRST---PRVL 441
Query: 385 EIVICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQHILLECRKF 431
+I ++R G L H FL +R+ P + CE ++ H+L C +F
Sbjct: 442 SSLIIQMRTGKIGLRH-FLYQRKVPGVTSGECECGQGLQTVSHVLYTCSRF 491
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 508 ENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY----NENSVFSSELLAIFMLLSHIY 563
+N + YTDGS + G A I K Y +V+++EL I M L
Sbjct: 233 DNTEGVLIYTDGSAVNGHVGAAAIAPGMCTSRKRYIGSTRCTTVYAAELQGIEMALE--I 290
Query: 564 STSSRTEYIFRDSIFICTDSKSSLLAL--KNIMSPNHLVNNILVKINELKILNITVKFLW 621
+ ++ ++ I + S F TD++++L AL S ++ ++++K+ +L + F W
Sbjct: 291 AGTAISQGITKFSAF--TDNQAALRALIHPGDHSGQQILASVILKLQQLWGAGASFDFHW 348
Query: 622 IPSHLGIAGN 631
IP+H G+ GN
Sbjct: 349 IPAHQGVPGN 358
>gi|119196745|ref|XP_001248976.1| hypothetical protein CIMG_02747 [Coccidioides immitis RS]
Length = 2000
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 90/467 (19%), Positives = 190/467 (40%), Gaps = 82/467 (17%)
Query: 17 TWGLSRACLLRLFYAFVRPIMDYG-------AVIYGSATQSSLSKLNTVYHTALRIISGA 69
TWG L +++ A + P M YG Y + ++ + + A +II+GA
Sbjct: 1403 TWGTGAINLRQVYRAMIIPQMLYGCSAWYIPGTGYTGRGSAMINAIRRIQRRAAQIITGA 1462
Query: 70 YRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLP 129
++T+ ++ E P++ + + R++ +P + N +P
Sbjct: 1463 FQTTAGAAVDVEAHLLPVQQQLEQTALEATMRMRTSPLH---------------NDMAVP 1507
Query: 130 RTVKSRLEDLQIFDRISA-----------QVIKRDEYIAP--WELSVPEIIYLTSEKKEN 176
R + DR S+ ++ KR ++ P W P I + +E
Sbjct: 1508 GGDNRRSDTQSPLDRFSSILEHKYNVQLNRLEKRQPHVVPPWW---TPPFICIKDSAEE- 1563
Query: 177 LSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET---------ESQVFKLYN 227
A + ++ YTDGS + G A + + +Q +
Sbjct: 1564 --------AIKEHNTIEPATICIYTDGSGINNHVGAAAVAPSLQANGGYTKRTQYMGPSS 1615
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVN 285
++V+++EL + + L I + + + ++F TD+++++ A++N S +++
Sbjct: 1616 TSTVYAAELRGLVLALEIILDLHATGATPRKCAIF--TDNQAAIQAIRNPKHSSGQYILL 1673
Query: 286 NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS-------------QNAPLLS 332
+ ++ L+ V+F WIP+H+G+ GN + D +AK + + PL
Sbjct: 1674 EAIQALDMLRNFGWEVQFRWIPAHVGVPGNEEADRMAKEATGVDPGINIERLPETDPLRI 1733
Query: 333 MMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRR--IKEDTLLWKSSFDKDRRKEIVICR 390
+ + KS I++++ EW W+N +L R I+ + + R I +
Sbjct: 1734 LTAT--TKSTIRQRMKHEWETSWENAKHGRELFRLGIRPGKAILNTHSGTHRAISSAITQ 1791
Query: 391 LRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
+R G L T+ + + + D C+ ++++ L+E +F R+
Sbjct: 1792 MRTGKIGLRTYLYSINKADTDKCQCGTLKIT----LVEGCEFEQKRS 1834
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 13/127 (10%)
Query: 516 YTDGSKTAANSGCAYITET---------ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
YTDGS + G A + + +Q + ++V+++EL + + L I
Sbjct: 1579 YTDGSGINNHVGAAAVAPSLQANGGYTKRTQYMGPSSTSTVYAAELRGLVLALEIILDLH 1638
Query: 567 SRTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPS 624
+ + +IF TD+++++ A++N S +++ + ++ L+ V+F WIP+
Sbjct: 1639 ATGATPRKCAIF--TDNQAAIQAIRNPKHSSGQYILLEAIQALDMLRNFGWEVQFRWIPA 1696
Query: 625 HLGIAGN 631
H+G+ GN
Sbjct: 1697 HVGVPGN 1703
>gi|154270239|ref|XP_001535976.1| hypothetical protein HCAG_09089 [Ajellomyces capsulatus NAm1]
gi|150410083|gb|EDN05471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 832
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 127/294 (43%), Gaps = 32/294 (10%)
Query: 158 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 217
PW+ V + IYL S++ + A+K A + + +TD +K + G A +
Sbjct: 488 PWQKPVLKDIYLDSDR-----ARAIKRATEIMENPIKA---VFTDAAKENSVLGAAVLIM 539
Query: 218 TES-------QVFKLYNEN-SVFSSELLAIFMLLSHICNTRSR---PEYIFRDSVFICTD 266
S QV ++ +V ++ELLAI+ L + + S P + I +D
Sbjct: 540 DNSYRIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSEGTPPPHQHHTYTILSD 599
Query: 267 SKSSLLALKNIMS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
S ++L A+ N +V NIL +LK + I + W+P H GI GN D+LAK
Sbjct: 600 SHTALRAIANSSKQVGGQIVQNILRTTKQLKSIGIDLCLQWVPGHSGIRGNEMADQLAKQ 659
Query: 325 SQNA-PLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-- 380
S N P + L+ A + EW W + LR+I D L +
Sbjct: 660 SINPNPTHGFPKPASHLREASRNSTTHEWRDEWSSTAKGTHLRKI--DAALPGQHTRRLY 717
Query: 381 ---DRRKEIVICRLRIGHSHLTH-NFLLKREDPPLCEWCNVQLSIQHILLECRK 430
R + ++ +LR GHS L +K D CE C + + H+L++C +
Sbjct: 718 ATLPRPQARLLAQLRTGHSWLNEFRNQIKYTDNNKCE-CGAKELVHHVLVDCSR 770
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 474 PWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
PW+ V + IYL S++ + A+K A + + +TD +K + G A +
Sbjct: 488 PWQKPVLKDIYLDSDR-----ARAIKRATEIMENPIKA---VFTDAAKENSVLGAAVLIM 539
Query: 534 TES-------QVFKLYNEN-SVFSSELLAIFMLLSHIYST--SSRTEYIFRDSIF-ICTD 582
S QV ++ +V ++ELLAI+ L ++ + S T + + I +D
Sbjct: 540 DNSYRIQYGIQVGVGREKHWTVTTAELLAIYHGLYLVWRSHSSEGTPPPHQHHTYTILSD 599
Query: 583 SKSSLLALKNIMS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
S ++L A+ N +V NIL +LK + I + W+P H GI GN
Sbjct: 600 SHTALRAIANSSKQVGGQIVQNILRTTKQLKSIGIDLCLQWVPGHSGIRGN 650
>gi|331245769|ref|XP_003335520.1| hypothetical protein PGTG_16963 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1463
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 107/471 (22%), Positives = 188/471 (39%), Gaps = 88/471 (18%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ K IN LK+ N WG + ++L + + P + YGA I+ AT+ + K+ +
Sbjct: 961 KASKTINQLKIFGNSRWGARESDRVKLIRSVLFPRLTYGAAIW--ATELNKGKVTALAEK 1018
Query: 62 ALRIIS----GAYRT---------SPIESLYAENGQPPLETR-----RKILLANYGTRVK 103
R+ G +++ SPI SLY ++T RKI+ +K
Sbjct: 1019 VDRLAGIFALGVFKSTATAFIRSRSPIPSLYDNI----IKTSFSFFYRKIVF------IK 1068
Query: 104 CNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYI---APWE 160
N +N S IL+ +RA+ R + RIS + E I ++
Sbjct: 1069 AN-NNVRSFILS--------SRADSSRRFADAAQVGLATQRISDALSLEPEQIHIPIGFQ 1119
Query: 161 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETES 220
+ I +E +++ + N SL ++DGS G
Sbjct: 1120 PATTRAIGYVNEHLSKTAAITSVKSIISCHSTNPRSLLIFSDGSFHPEKGGAGAAICPSE 1179
Query: 221 QVFKLYN--ENSVFS------SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL 272
+VF YN N+ S + +LA L +H+C+T + R ++ I D++ +
Sbjct: 1180 RVFSSYNLGGNTSISNHESEAAGVLAALELANHLCST------LDRSNIMIFMDNQGVIS 1233
Query: 273 ALKNIMSPNHLVNNILVKIN---ELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAP 329
KN SP I KI+ L + + F+W P H+ I GN D+LA+ + +P
Sbjct: 1234 RTKNPRSPKP-GQWIFEKIDSSISLLPEGLGISFVWCPGHVNIPGNEMADQLAREALESP 1292
Query: 330 LLSMMTSED----LKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKE 385
+ ++ ++ + LL +R TL S
Sbjct: 1293 SAPPLPTKGNYLKIQHQVTAALLP---------------KRPSPSTLPISCS-------- 1329
Query: 386 IVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
+I +L GH L + F ++R PLC +C + +++H++ C + ++ R
Sbjct: 1330 SLINQLASGHCALKSFLFRIRRHFDPLCSFCGSRETVRHLMNFCPQAKSQR 1380
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 509 NQNSLFCYTDGSKTAANSGCAYITETESQVFKLYN--ENSVFS------SELLAIFMLLS 560
N SL ++DGS G +VF YN N+ S + +LA L +
Sbjct: 1152 NPRSLLIFSDGSFHPEKGGAGAAICPSERVFSSYNLGGNTSISNHESEAAGVLAALELAN 1211
Query: 561 HIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINE---LKILNITV 617
H+ ST + R +I I D++ + KN SP I KI+ L + +
Sbjct: 1212 HLCST------LDRSNIMIFMDNQGVISRTKNPRSPKP-GQWIFEKIDSSISLLPEGLGI 1264
Query: 618 KFLWIPSHLGIAGN 631
F+W P H+ I GN
Sbjct: 1265 SFVWCPGHVNIPGN 1278
>gi|443720278|gb|ELU10076.1| hypothetical protein CAPTEDRAFT_219461 [Capitella teleta]
Length = 498
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 181 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIF 240
A++ F NS YTDGSK+ + SV+++EL+AI
Sbjct: 84 ALRTEFLNLLDRYPNSYIFYTDGSKSE-------------------DAMSVYTAELIAIN 124
Query: 241 MLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 300
L+ I + D ICTD SS+LA+ +I + V +IL K L +
Sbjct: 125 ETLTSIA-------LLPYDEFVICTDFLSSILAISSIDLIHPYVQSILQKCTCLAGRDKR 177
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNV 359
+ F+W PSH+GI GN D +AK + +L+ + D K + ++W W
Sbjct: 178 IIFIWCPSHVGIPGNETADTVAKQALGMNILNCHIPHTDFKPITCSFVKTQWQSEWDQET 237
Query: 360 INNKLRRIKEDTLLWKSS 377
NKL I+ D W S
Sbjct: 238 -GNKLHDIQPDIGSWPPS 254
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K K +N+LK+L + +WG R LL+LF +F+R +DYG+++YG+A S L +L V +
Sbjct: 24 KCQKYLNLLKILAHYSWGADRKTLLQLFRSFIRSTLDYGSIVYGAARPSYLKRLGVVQNQ 83
Query: 62 ALR 64
ALR
Sbjct: 84 ALR 86
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 61/135 (45%), Gaps = 26/135 (19%)
Query: 497 AVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIF 556
A++ F NS YTDGSK+ + SV+++EL+AI
Sbjct: 84 ALRTEFLNLLDRYPNSYIFYTDGSKSE-------------------DAMSVYTAELIAIN 124
Query: 557 MLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 616
L+ I + D ICTD SS+LA+ +I + V +IL K L +
Sbjct: 125 ETLTSI-------ALLPYDEFVICTDFLSSILAISSIDLIHPYVQSILQKCTCLAGRDKR 177
Query: 617 VKFLWIPSHLGIAGN 631
+ F+W PSH+GI GN
Sbjct: 178 IIFIWCPSHVGIPGN 192
>gi|261336121|dbj|BAI44754.1| pol-like protein [Alternaria alternata]
Length = 1186
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 43/350 (12%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA---------TQSSL 52
K+ + ++ L L TWG+ + +L+ A V P M Y I+ +A T ++
Sbjct: 785 KATRTVHTLNSLGGSTWGIRLQDMRKLYEAIVLPQMMYACSIWSNANLHEGSRTYTHKTI 844
Query: 53 SKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK-CNP----- 106
L ++ A R I GAY+ + + +L E P+E + A+ TR+ C
Sbjct: 845 DALRSIQARAARSICGAYKATAMAALDVEAFLLPVEQQIWRRNADVITRLSSCREIAKTA 904
Query: 107 ----SNPVSLILTHAQLGRNINRANLPRTVKSR-LEDLQIFDRISAQVIKRDEYIAPWEL 161
+ PV ++ + R + ++S+ + DL+ + I + PW
Sbjct: 905 GFELNEPVPVVAKRNRRPRKSPWWKINEELRSKQVRDLEKQEPIPPFIT------PPWRR 958
Query: 162 SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQ 221
I +EK + SL YTDGS G A + Q
Sbjct: 959 GPRTYIDDNAEKARDRHDKECAT---------DKSLSIYTDGSGIEGEIGSAAVCPLTKQ 1009
Query: 222 VFKLY----NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL--LALK 275
++ ++V+++EL I + L HI + + +D + + TD+++ + +A
Sbjct: 1010 TRSVHMGSDTLSTVYAAELQGISLAL-HIAKEYADGDGERKD-IAVYTDNQAVIWSIAKA 1067
Query: 276 NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
S +++ I ++ EL+ ++V WIP+H+GI GN D+ AK +
Sbjct: 1068 EGRSGAYILAGIAQQVQELQNKGLSVTVRWIPAHVGIEGNEAADQAAKEA 1117
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 512 SLFCYTDGSKTAANSGCAYITETESQVFKLY----NENSVFSSELLAIFMLLSHIYSTSS 567
SL YTDGS G A + Q ++ ++V+++EL I + L HI +
Sbjct: 984 SLSIYTDGSGIEGEIGSAAVCPLTKQTRSVHMGSDTLSTVYAAELQGISLAL-HIAKEYA 1042
Query: 568 RTEYIFRDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 625
+ +D I + TD+++ + +A S +++ I ++ EL+ ++V WIP+H
Sbjct: 1043 DGDGERKD-IAVYTDNQAVIWSIAKAEGRSGAYILAGIAQQVQELQNKGLSVTVRWIPAH 1101
Query: 626 LGIAGN 631
+GI GN
Sbjct: 1102 VGIEGN 1107
>gi|154272339|ref|XP_001537022.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409009|gb|EDN04465.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 510
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 128/311 (41%), Gaps = 53/311 (17%)
Query: 156 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 215
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 163 VKPWWRAPTITITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 214
Query: 216 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
+ ++ L E S V+++ELL I M L+ I + R IF TD++++L
Sbjct: 215 APSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAAL 267
Query: 272 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-- 327
AL+N S ++ I+ ++ ++ + V+F WIP+H GI GN D LAK +
Sbjct: 268 KALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGNELADNLAKEATGCR 327
Query: 328 ------APLLSMMTSED---------LKSAIKKKLLSEWHLHWKNNVINNKLRRI----- 367
++++ T + L SA K +L + + W+ + N R
Sbjct: 328 QQRGRRGRMITVDTDDTAATPDFLRHLISAAKSELHRQTQVQWERDWENESSGRATYVLT 387
Query: 368 ---KEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP----PLCEWCNVQLS 420
L S K IV ++R G L FL +R+ P LCE +
Sbjct: 388 PAPSPTVLHLHHSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQT 444
Query: 421 IQHILLECRKF 431
++H+LL C +F
Sbjct: 445 VRHVLLACPRF 455
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 163 VKPWWRAPTITITEGREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 214
Query: 532 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
+ ++ L E S V+++ELL I M L+ I ++ R IF TD++++L
Sbjct: 215 APSIHTQELAYLGKETSTTVYAAELLGIHMGLNLILASDRRRAAIF-------TDNQAAL 267
Query: 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL+N S ++ I+ ++ ++ + V+F WIP+H GI GN
Sbjct: 268 KALQNPRRSSGQSILRRIIDALDRVRAQGLQVEFYWIPAHQGIEGN 313
>gi|403411627|emb|CCL98327.1| predicted protein [Fibroporia radiculosa]
Length = 766
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 86/372 (23%), Positives = 153/372 (41%), Gaps = 60/372 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSAT----QSSLSKLNT 57
K+ +N L++L N G + RL+ A V P+M YGA+++ + + ++ L
Sbjct: 24 KAESTVNTLRMLGNSVRGFTPVNKRRLYIAHVMPLMLYGAILWWKPSWKRHKWAIGDLQR 83
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHA 117
+ AL+ I+G +R++PI ++ G P++ + R + +L HA
Sbjct: 84 AQNKALQWITGCFRSTPIGAMETMAGMFPVKVNVDRYMERSCLRAR-------TLHEGHA 136
Query: 118 QLG-----RNINRANLPRTVKSRLEDLQIFDR---ISAQVIKR-----DEYIAPWELSVP 164
N+N NL + E + R A VI R E AP L
Sbjct: 137 NRAILSNYWNVNMHNLVSPFPFQGEGTRKGKRKAITPAHVIDRLGRRSSEEFAPLHLIAE 196
Query: 165 EIIYLTSEKKENLSSVAVKNAFFQFKG--------------------ENQNSLFCYTDGS 204
++ + + ++ +K KG ++N+ + +TDGS
Sbjct: 197 PGRHIRDKYPDRITEHFLKPGSHPAKGSAEFEEWFQNIWVLIFQQVVRDENARYLFTDGS 256
Query: 205 --KTAANSGCAYITETESQVFKLYNENSVFSSELLAIF----MLLSHICNTRSRPEYIFR 258
+ SGCA++T + Y + F + AIF M L+ ++ +
Sbjct: 257 LVPNGSRSGCAWLTMSGHN----YLNSGKFGAGRCAIFDAEMMALARGIHSALQGAPQDC 312
Query: 259 DSVFICTDSKSSLLALKNI-MSPNHLVNNILVKINELKILNIT----VKFLWIPSHLGIA 313
+ +C D+ +L + N M P+ LV+ IL ++ L + + LW+PSH +
Sbjct: 313 THLVLCVDNAGALSKILNCEMGPSQLVS-ILAAEKVMEFLQRSERHHISLLWVPSHKDVP 371
Query: 314 GNVQVDELAKNS 325
N VDELAK++
Sbjct: 372 PNEFVDELAKSA 383
>gi|425774046|gb|EKV12369.1| Reverse transcriptase, putative [Penicillium digitatum PHI26]
Length = 1225
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 36/349 (10%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH- 60
K+ ++ L+ L TWG S + + ++ A + P M +GA + S S+L + + V
Sbjct: 777 KAGVSLQALRGLTGSTWGASLSAMRAIYQAVMIPQMLFGAAAWHSPLTSTLRERSYVKQF 836
Query: 61 -----TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL- 114
A ++SGA++T+ E+L E P++ + L+ R++ P+ V +
Sbjct: 837 ANIQSRAACLMSGAFKTTAREALDIELHLLPMQQQLDRLVQLAAIRIRTGPAYAVPKTML 896
Query: 115 ---THAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYI-APWELSVPEIIYLT 170
H Q R +T K +++ R YI APW + P +Y+
Sbjct: 897 VERGHMQKQRGGYTPMEAQTWKKGGCLTTPLGPLASTWESRKAYIQAPW--TKPPRVYIE 954
Query: 171 S-EKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-----ETESQVFK 224
E+ N + + + YTDGS G A E+++
Sbjct: 955 ERERAINTHKRTTEQLYAPAR--------LYTDGSGYQGGIGAAVYPAYPYRRNEARLCN 1006
Query: 225 LYNEN--SVFSSELLAIFMLLSHICNTRSRPEYIFRD-----SVFICTDSKSSLLALKNI 277
+ ++ +V+++EL AI M L + R + +RD V I TD++++L A++N
Sbjct: 1007 MGTDDDATVYAAELRAIEMAL-EVIKERFNDDNEWRDCLAKSGVVIFTDNQATLRAIQNP 1065
Query: 278 MSPNHLVN-NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
P+ V +++ E I V+ W+P+H GI GN D AK +
Sbjct: 1066 RMPSGQVYLEGCLRLLEWCNDKIQVELRWVPAHEGIPGNEAADMYAKEA 1114
>gi|443727119|gb|ELU14007.1| hypothetical protein CAPTEDRAFT_217934 [Capitella teleta]
Length = 664
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 79/152 (51%), Gaps = 17/152 (11%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFR 258
+TDGSK+ + C+ + +L + S+FS+ELLAI+ +L+ + C+T + +++
Sbjct: 221 FTDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSTNDQQQFL-- 278
Query: 259 DSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
I TDS SSL A+ N + V IL K L I + W PSH+G+ GN +
Sbjct: 279 ----IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIDLVMAWCPSHVGVMGNERA 334
Query: 319 DELAKNS----------QNAPLLSMMTSEDLK 340
D LAK + ++ PL+ M T+ L+
Sbjct: 335 DLLAKEALSFTTYQFCHEHLPLVDMETNPFLR 366
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 7/123 (5%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIY-STSSRTEYIFR 574
+TDGSK+ + C+ + +L + S+FS+ELLAI+ +L+ + ST+ + +++
Sbjct: 221 FTDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSTNDQQQFL-- 278
Query: 575 DSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
I TDS SSL A+ N + V IL K L I + W PSH+G+ GN +
Sbjct: 279 ----IATDSLSSLQAIGNFNIKHPYVFKILEKCTLLHKKGIDLVMAWCPSHVGVMGNERA 334
Query: 635 PFL 637
L
Sbjct: 335 DLL 337
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 343 IKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNF 402
I + L+EW + +NKL ++ WK DRR EIV+ R RIGHSHLTH +
Sbjct: 470 IYRAELNEW-----DEETDNKLHSVQPVISEWKQDAQMDRRGEIVMARARIGHSHLTHGY 524
Query: 403 LLKRE 407
LL+RE
Sbjct: 525 LLRRE 529
>gi|321456611|gb|EFX67714.1| hypothetical protein DAPPUDRAFT_330770 [Daphnia pulex]
Length = 316
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 43/281 (15%)
Query: 196 SLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
S+ YTDGSK+++ + CA + V+ L +S+F++E+ AI+ L +
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
P +++ S + N +S N + I+ LK + WIPSH G
Sbjct: 82 CPP----EAIIYSDSSSAITAISSNSLSENEAITATREIISSLKSSGTRTRLTWIPSHTG 137
Query: 312 IAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK-KKLLSEWHLHWKNNVINNK------- 363
I GN + D LA N E++ +++ K+++S +W N++ N+
Sbjct: 138 IEGNERADRLAATECNT-----QDGEEVHNSLSPKEMVSIIRANWATNLLRNQKTCKKSC 192
Query: 364 -LRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP---PLCE-WCNVQ 418
R ++ T+ W +R+ I + RLR GH+ L N R DP P C C
Sbjct: 193 IQMRSRQGTIKWHQ--HPNRQVAICLHRLRSGHNRL--NAFSHRIDPEADPSCRVGCAAI 248
Query: 419 LSIQHILLEC----------RKFRASRNKWHLKDDISALLG 449
+ +HIL C R+F + RN L+ + S + G
Sbjct: 249 ENARHILESCSRNEEFRLKIRQFFSDRN---LELNASTMFG 286
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 512 SLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTSS 567
S+ YTDGSK+++ + CA + V+ L +S+F++E+ AI+ L Y
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDM-- 79
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
+ ++I S + N +S N + I+ LK + WIPSH G
Sbjct: 80 --DDCPPEAIIYSDSSSAITAISSNSLSENEAITATREIISSLKSSGTRTRLTWIPSHTG 137
Query: 628 IAGN 631
I GN
Sbjct: 138 IEGN 141
>gi|156051540|ref|XP_001591731.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980]
gi|154704955|gb|EDO04694.1| hypothetical protein SS1G_07177 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 975
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 96/446 (21%), Positives = 180/446 (40%), Gaps = 65/446 (14%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
G+ L +L+ A V I DY +VI+ + ++ + ALR I G ++T+PI +
Sbjct: 486 GICPKALRQLYIACVTSIADYASVIWWRGQAHFKDMMQSLQNLALRKILGVFKTAPILPM 545
Query: 79 YAENGQPPLETRRKILLANYGTRV-KCNPSNPVSL-ILTHAQLGRNINRANLPRTVKSRL 136
E G P + R + Y R+ K +P++P+++ + Q N++ + PR + +
Sbjct: 546 EVEAGLKPSKIRLDSNIRQYAFRLAKLSPNHPINIEKASLIQYQANLDAISTPRRKRYKP 605
Query: 137 EDL--------QIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQ 188
L Q F+ S + I + PW+ P + +++ KE+ + + N F
Sbjct: 606 TQLDKIKESINQDFNPSSLEKIIHFNF-PPWKRETPFRVNISNSSKED--AAILHNIVF- 661
Query: 189 FKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICN 248
K ++++ + YTD S T + V++ EL + + + +
Sbjct: 662 -KHRDKDTTYIYTDASST--------------------EKGIVYNGELFGVTRAIEYASS 700
Query: 249 TRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNNI-LVKINE-LKILNITVKFLW 305
+ F I +D+++ L LK N I +K E ++ + W
Sbjct: 701 I------AYTGQKFKIYSDNQAGLYRLKTPSDHPGQANQIRAIKAAEVIRAKGAEISLNW 754
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
+P H + GN D+LAK + S TS L K+ S+ W + + +LR
Sbjct: 755 VPGHTSVEGNELADKLAKEATTIQPTSNETSFGLLGMTVKEYASD---QWLDTLKQYELR 811
Query: 366 RIKEDT-----LLWKSS------FDKDRRKEIVICRLRIGHSHLT---HNFLLKREDPPL 411
+ + WK R +L++GH ++ H F L
Sbjct: 812 SNQSPSTYSKLFPWKIGSKIKLPSGTTRNTASAFFQLKLGHGYIKSYLHRFKLTNNK--- 868
Query: 412 CEWCNVQLSIQHILLECRKFRASRNK 437
C N++ + QH+L+ C ++ R +
Sbjct: 869 CICSNIE-APQHLLISCPIYKTKRKE 893
>gi|321451947|gb|EFX63450.1| hypothetical protein DAPPUDRAFT_335441 [Daphnia pulex]
Length = 316
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 43/281 (15%)
Query: 196 SLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
S+ YTDGSK+++ + CA + V+ L +S+F++E+ AI+ L +
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDMDD 81
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
P +++ S + N +S N + I LK + WIPSH G
Sbjct: 82 CPP----EAIIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTG 137
Query: 312 IAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK-KKLLSEWHLHWKNNVINNK------- 363
I GN + D LA N E++ +++ K+++S +W N++ N+
Sbjct: 138 IEGNERADRLAATECN-----TQDGEEVHNSLSPKEMVSIIRANWATNLLRNQKTCKKSC 192
Query: 364 -LRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP---PLCE-WCNVQ 418
R ++ T+ W +R+ I + RLR GH+ L N R DP P C C
Sbjct: 193 IQMRSRQGTIKWHQ--HPNRQVAICLHRLRSGHNRL--NAFSHRIDPEADPSCRVGCAAI 248
Query: 419 LSIQHILLEC----------RKFRASRNKWHLKDDISALLG 449
+ +HIL C R+F + RN L+ + S + G
Sbjct: 249 ENARHILESCSRNEEFGLKIRQFFSDRN---LELNASTMFG 286
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 512 SLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTSS 567
S+ YTDGSK+++ + CA + V+ L +S+F++E+ AI+ L Y
Sbjct: 22 SIRAYTDGSKSSSQETTTCAIFIPALNKEHVWTLTKGSSIFTAEVTAIYQALKLFYDM-- 79
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
+ ++I S + N +S N + I LK + WIPSH G
Sbjct: 80 --DDCPPEAIIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWIPSHTG 137
Query: 628 IAGN 631
I GN
Sbjct: 138 IEGN 141
>gi|427798049|gb|JAA64476.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 972
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 150/344 (43%), Gaps = 51/344 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K +A+ +L+ L+++ G+ R LL ++ +VRP++++G V++ A L L +
Sbjct: 657 KGERAVGVLRRLSSRRSGMRRKALLMVYKMYVRPVLEFGCVLFSGAPAYKLRPLVLLERE 716
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR 121
ALR+ G + LY E PPL +R +L R+ +PSN HAQ+
Sbjct: 717 ALRLCLGLPKFVANAVLYLEARTPPLLSRFNLLTVQSFLRLYESPSN-------HAQIVF 769
Query: 122 NIN-----RANLPRTVKSRLEDLQ-IFDRISAQVIKRDEYIAPWELSVP---EIIYL-TS 171
N + PR K ++ +Q + D ++ ++ RD + P + +P EI+Y
Sbjct: 770 ISNPDLFFSEHWPRFRKPQIVFVQSLLDSLNVRI--RD--VLPMTM-LPKSIEIVYHDIF 824
Query: 172 EKKENLSSVAVKNAFFQFKGENQN----SLFCYTDGSKTAANSGCAYITETESQVF--KL 225
L S + N Q E+ N ++ TD S++ SG F +L
Sbjct: 825 PNHAKLLSHGILNGLLQ---EHLNILPTNIVIATDASQSQERSGIGIFCPKLEWSFSLRL 881
Query: 226 YNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS----LLALKNIMSPN 281
+ VF +E +AI + L + +T I DS+ +C+ +S +L L +++ P
Sbjct: 882 PDYIPVFLAEFMAIILALRKL-STAVTVVAIITDSLSVCSSLFASGVTPILKLFHVLVPA 940
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
HL + +W+ H G+ N LAK++
Sbjct: 941 HLQ---------------CIHLIWVTGHKGLLLNKMTGSLAKSA 969
>gi|427778015|gb|JAA54459.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 482
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 181/448 (40%), Gaps = 43/448 (9%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIIS 67
++ K L KTWG+S +L L+ A + Y + + ++++ L V ALR+
Sbjct: 10 HLFKFLAGKTWGMSVDAMLELYRALFLGFLRYSLPVLSNTCKTNIRVLQAVQAQALRVCL 69
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
G R + E+ A P++T I + T ++ P + A L + +A+
Sbjct: 70 GLPRCTSTEATIAIARDHPMQT--HIPVEVLRTHIRHFARAPCHHL---ATLPSDRRQAS 124
Query: 128 LPRTVKSRLEDLQIFDRI-SAQVIKRDEYIAPWELSVPEIIYLTS--EKKENLSSVAVKN 184
+T+ ++ D++ S + PW L P + KK LSS +K
Sbjct: 125 FSKTI------VKYNDKLPSGFTTASKPSMPPWCLIRPTVHLCVPGIRKKSELSSPVLKQ 178
Query: 185 AFFQFKGEN-QNSLFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVFSSELLAIFM 241
E +S+ YTDGS S A + + F+ + + ++EL +
Sbjct: 179 LSLLLLHERYADSVHLYTDGSTNLQFSSGAVVVPARAITTSFRTDHPTTSTAAELAXXXL 238
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSP------NHLVNNILVKINELK 295
L + R P+ + S+F +DSK+ AL++++S LV I I+
Sbjct: 239 CLVN----REPPQ---KWSIF--SDSKA---ALQSVLSALRRGPYEQLVFEIRYLIHTSH 286
Query: 296 ILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------PLLSMMTSEDLKSAIKKKLLS 349
V F W+PSH G+ GN D A+ + PL + L+ ++ LS
Sbjct: 287 EKGHHVTFQWLPSHCGVIGNEHADNAARAALEGTQEDTIPLSRSDAASSLRGLAQEITLS 346
Query: 350 EWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKRED 408
W N R+ L+ S + RR+ ++ RL + +++F D
Sbjct: 347 LWCPPSSQTNRTNCQHRLSSLMHLYMPSGLR-RREATLLYRLXXXVAFTKSYSFRSGMAD 405
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASRN 436
LC+ C + +I HIL +C + R
Sbjct: 406 DALCDACRCEETICHILCDCPVYNVQRQ 433
>gi|380490755|emb|CCF35795.1| reverse transcriptase [Colletotrichum higginsianum]
Length = 906
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/388 (24%), Positives = 149/388 (38%), Gaps = 79/388 (20%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------------IYGSAT 48
K+ + +N L+ L N WG L R + V PI Y + I +
Sbjct: 411 KACQVVNGLRGLGNTAWGAPTHLLRRAITSCVLPIQYYASEAWWPGRNRIKNGHIASNGV 470
Query: 49 QSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRV-KCNPS 107
L++L+ A+R YRT+P+ L E PP E L R+ + +
Sbjct: 471 NGLLNQLDITQAKAIRAALPVYRTTPVSILQREAALPPAEVMLDAKLHKASVRIHRLDDR 530
Query: 108 NPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAP--------- 158
+P+ +LG SRL R+++ + + EYI P
Sbjct: 531 HPL-----RTRLGERPG-------PDSRLR------RMASLIERHAEYIDPLELPPWERS 572
Query: 159 --WELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGE-NQNSLFCYT------DGSKTAAN 209
W ++ + Y + K+ L++ AF G ++ + YT DGS+TAA
Sbjct: 573 ADWHTALSMVGYEPRKTKDELAT-----AFTDRLGALSKRDIVVYTDGSQMVDGSRTAAG 627
Query: 210 SGCAYITETESQVFK----LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICT 265
+G T Q+F+ L ++ VF +E A F L + P D+V IC
Sbjct: 628 AGWVGYQATR-QIFRGSEPLGHQTEVFDAEAQAAFRGLLEAMRS---PTARMADNVHICL 683
Query: 266 D--SKSSLLALKNIMSPN---HLVNNILVKINELKILNIT----VKFLWIPSHLGIAGNV 316
D + ++ L ++ S + + V + + T V W P H GIAGN
Sbjct: 684 DNLAVTARLVTRSPGSSQARFRAFSELSVSWAQRGRTSWTRPGRVYIWWCPGHTGIAGNE 743
Query: 317 QVDELAK-------NSQNAPLLSMMTSE 337
+ D LAK SQ P L+ + E
Sbjct: 744 EADALAKEACRQIPESQPQPTLAHLKRE 771
>gi|353245589|emb|CCA76508.1| hypothetical protein PIIN_10501 [Piriformospora indica DSM 11827]
Length = 348
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 133/303 (43%), Gaps = 47/303 (15%)
Query: 196 SLFCYTDGSKTAANSGCAYITETESQVFKLYN-------ENSVFSSELLAIFMLLSHICN 248
S+ YTDGS G A + + K E++V EL+ I + + H+
Sbjct: 39 SVAIYTDGSGMEGKIGAAAVLYRNGRRVKAVRYLLGAETEHTVHEGELVGIALGI-HLAR 97
Query: 249 TRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN---HLVNNILVKI-NEL-KILNITVKF 303
T R V I D+++++ ++ PN H+V NIL +I +EL + ++F
Sbjct: 98 TMQ----GNRAKVNISLDNQAAIQSITR-ARPNAGQHVVENILSEIEDELSDYRRLRMEF 152
Query: 304 LWIPSHLGIAGNVQVDELAKN--SQNA------------PLLSMMTSEDLKSAIKKKLLS 349
W+P H GI GN DE AK ++ A PL S +++ +K K+
Sbjct: 153 TWVPGHEGIQGNEAADEEAKKAITEGASRPSEHPRWLREPLPSNLSA--VKQECKRLAKE 210
Query: 350 EWHLHWKNNVINNKLRRIKED--TLLWKSSFDK-DRRKEIVICRLRIGHSHLT-HNFLLK 405
W N+ +++ +I E + + DK RR ++ +LR GH+ L H +
Sbjct: 211 GARERWNNSKRFDRMSKIDETMPSGRYLKLTDKLSRRDAALLIQLRTGHTGLNGHLNRIN 270
Query: 406 REDPPLCEWCNVQ--LSIQHILLECRKFRASRNKWHLK-----DDISALLG--DDHDEIY 456
R D P C C + ++ H+L C K+ +R +W +D+ +LG D +E
Sbjct: 271 RADSPWCPHCGERNYENLMHVLYICPKYGEARAEWERSLRGRTEDLKEVLGTEDGIEETL 330
Query: 457 KCI 459
K I
Sbjct: 331 KFI 333
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 512 SLFCYTDGSKTAANSGCAYITETESQVFKLYN-------ENSVFSSELLAIFMLLSHIYS 564
S+ YTDGS G A + + K E++V EL+ I + + H+
Sbjct: 39 SVAIYTDGSGMEGKIGAAAVLYRNGRRVKAVRYLLGAETEHTVHEGELVGIALGI-HL-- 95
Query: 565 TSSRTEYIFRDSIFICTDSKSSLLALKNIMSPN---HLVNNILVKI-NEL-KILNITVKF 619
+RT R + I D+++++ ++ PN H+V NIL +I +EL + ++F
Sbjct: 96 --ARTMQGNRAKVNISLDNQAAIQSITR-ARPNAGQHVVENILSEIEDELSDYRRLRMEF 152
Query: 620 LWIPSHLGIAGN 631
W+P H GI GN
Sbjct: 153 TWVPGHEGIQGN 164
>gi|242797976|ref|XP_002483073.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
gi|218716418|gb|EED15839.1| hypothetical protein TSTA_009600 [Talaromyces stipitatus ATCC
10500]
Length = 701
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 15/167 (8%)
Query: 281 NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTS 336
H++ + ELK I ++ W+P H G GN D LAK + + P +++
Sbjct: 224 QHIIQHRKQSARELKARGIPLRLQWVPGHCGDPGNEAADRLAKEAVGLDKEHPFQHLLSR 283
Query: 337 EDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKED-----TLLWKSSFDKDRRKEIVICRL 391
E K I+ ++ EW WK + LRRI + T S ++R ++ +L
Sbjct: 284 E--KGFIRNRIQEEWERGWKTSKNGGHLRRIDRNLPAVRTRRMYGSLPRNR--AYLLTQL 339
Query: 392 RIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
R GHS L TH L + CE C ++ H+L+ C K + R +
Sbjct: 340 RTGHSWLATHGKLHGHREDDKCE-CGAIETVVHVLIHCPKLKTIRQE 385
>gi|2736044|gb|AAB94039.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 488
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 156/436 (35%), Gaps = 94/436 (21%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYHTALRIISGAYRTSPIES 77
GL + R++ + I+ YGA + A S KLN++ T L ++ AYRT+ E+
Sbjct: 113 GLPGEKMRRIYKTVIEKIISYGANTWTKALGSVEKKKLNSLQRTMLLSVTEAYRTTSTEA 172
Query: 78 LYAENGQPPL------ETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRT 131
+ PL E++R +L +C S VS GR I + +
Sbjct: 173 MQVIANITPLDLILRAESKRADIL-------ECGGSATVS--------GRPIGASGIEMR 217
Query: 132 VKSRLEDLQIFDRIS-AQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFK 190
+ + R+ A+ RD+YI
Sbjct: 218 PHKFATHPKNWTRVGWAEWHDRDDYI---------------------------------- 243
Query: 191 GENQNSLFCYTDGSKTAANSGCAYIT-----ETESQVFKLYNENSVFSSELLAIF---ML 242
L YTDGSKT+ +G A++ + S F L ++ + +E +AI M
Sbjct: 244 ------LQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAILKATMW 297
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 302
+ C + V I +DS+S+L AL + + +I I +K +
Sbjct: 298 FAEECQG---------NKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQID 348
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTS--EDLKSAIKKKLLSEWHLHWKNNVI 360
W H G AGN D AK + + +M +K+ IKK+ L EW W +
Sbjct: 349 LYWTKGHAGQAGNEMADRAAKEAVISGQRYVMPRPVSWVKALIKKETLREWATRWAGSDK 408
Query: 361 NNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL---THNFLLKREDPPLCEWCNV 417
I + F K+ I ++ H H F L PLC C
Sbjct: 409 GRHTHNIISAPGFKEWIFSKE------ITQILTNHGRTPSYMHRFGL--TSSPLCS-CGG 459
Query: 418 QLSIQHILLECRKFRA 433
+H CR A
Sbjct: 460 VGDWEHYFFFCRSTEA 475
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 513 LFCYTDGSKTAANSGCAYIT-----ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSS 567
L YTDGSKT+ +G A++ + S F L ++ + +E +AI + +T
Sbjct: 244 LQIYTDGSKTSDGTGAAFVVLDRGRQIFSAGFSLSKHHTHYQAEAVAI------LKATMW 297
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
E + + I +DS+S+L AL + + +I I +K + W H G
Sbjct: 298 FAEECQGNKVAIISDSQSALKALYRTQEVSPTIRDIKRTITTIKRQGRQIDLYWTKGHAG 357
Query: 628 IAGN 631
AGN
Sbjct: 358 QAGN 361
>gi|427779363|gb|JAA55133.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 417
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 34/367 (9%)
Query: 2 KSLKAIN-ILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
+ L AI+ + K L KTWG+S +L L+ + + Y + + ++++ L V
Sbjct: 3 QRLTAISQLFKFLCGKTWGMSVDAMLELYRSLFLGFLRYSLPVLTNTCKTNIRTLQAVQA 62
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKI--LLANYGTRVKCNPSNPVSLILTHAQ 118
ALR+ G + +P E+ + P++T + L A+ + + + +L+
Sbjct: 63 QALRVCLGLPKCAPTEATISIARDQPIQTHIAVEALRAHIRHFSRAHSHHLATLL----- 117
Query: 119 LGRNINRANLPRTVKSRLEDLQI-FDRISAQVIKRDEYIAP-WELSVPEIIYLTSEKKEN 176
RA+ T+ + L F S I +I P L+VP I KK
Sbjct: 118 --SERPRASYCATISNYAAHLPSGFSPASKPAIPPWCFIPPEVHLNVPGI-----RKKSE 170
Query: 177 LSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSE 235
LSS +K E + + YTDGS T S A + ++ ++ S+
Sbjct: 171 LSSPVLKQLSLLLLHEKYADHVHVYTDGSTTLQRSSGAVVVPAKAITISFKTDHPTTSTA 230
Query: 236 LLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELK 295
+ + R +P+ R SVF +DSK++L +L + + + ++ ++ L
Sbjct: 231 AELAALRAALRVVNREQPQ---RWSVF--SDSKAALQSLLSALR-HGPYEQLVFEVRHLL 284
Query: 296 ILNIT----VKFLWIPSHLGIAGNVQVDELAKNS------QNAPLLSMMTSEDLKSAIKK 345
+I VKF W+PSH G+ GN D A+++ + PL + L+ A ++
Sbjct: 285 HTSIEKGHHVKFQWLPSHCGVIGNEHADSAARSALQGDRLETIPLSRTDAASQLRVAAQE 344
Query: 346 KLLSEWH 352
S WH
Sbjct: 345 ITFSTWH 351
>gi|242765587|ref|XP_002341005.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724201|gb|EED23618.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1091
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 187/458 (40%), Gaps = 77/458 (16%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 577 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 636
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRNINRANLP 129
E P +A Y R+ P ++P + IL HAQ G P
Sbjct: 637 IREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQ------P 690
Query: 130 ---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWEL-SVPEIIYLTSEK 173
R SR D ++ +R+ AQ + RD E EL S P I + +K
Sbjct: 691 LDDREWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTERCELKSFPGSIRVL-DK 747
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-------ETESQVFKLY 226
+E L+ + A F ++DGS+ A +T E +
Sbjct: 748 EEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMG 797
Query: 227 NENSVFSSELLAIFMLLSHICNTRS-RPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-L 283
+ + VF +EL+ + L + P ++F D+++++ L++ P L
Sbjct: 798 HGHEVFDAELVGVATALEWALERQPLGPIWVF-------LDAQNAIDRLRSTRPGPGQAL 850
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLK 340
V +L + V W+P H GI GN Q D+ AK + Q AP ++ ++
Sbjct: 851 VLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVR 910
Query: 341 SA---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LR 392
A ++ +SEW + N + + R R+ + W + + + R L+
Sbjct: 911 RACTEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLK 967
Query: 393 IGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLEC 428
GH+ + T+ + + R + P C+ C +++H+L EC
Sbjct: 968 TGHAPIGTYLYRIGRRESPECQACKEPHETVRHVLFEC 1005
>gi|427793319|gb|JAA62111.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 333
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 50/305 (16%)
Query: 156 IAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAA 208
I PW L+VP I +KK LSS +K + Y+DGSKT
Sbjct: 10 IPPWCLIRPAVHLNVPGI-----KKKSELSSPVLKQLSL-----XXXHVHIYSDGSKTIR 59
Query: 209 NSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
+S A + FK + S ++EL A+ L + R +P+ R S+F TD
Sbjct: 60 SSSGAVVVPARGVTVSFKTDHPISSTAAELAALRTALCVL--NREQPQ---RWSIF--TD 112
Query: 267 SKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
SK++L +L + + P LV I I+ V F W+PSH G+ GN D A+
Sbjct: 113 SKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGNEHADNAAR 172
Query: 324 NS--QNAPLLSMMTSEDLKSAIKKKLLSEWHLH------WKNNVINNKLRRIKEDTLLWK 375
++ + PL + L+ I K +S+ LH ++ + + N LRR T L
Sbjct: 173 SALEEVIPLSRSDAASMLR--IIAKDISQPTLHTSRSQNYRQHHL-NALRRFHMPTGL-- 227
Query: 376 SSFDKDRRKEIVICR--LRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRA 433
RR+ ++CR LR+ + +++F + D +CE C + ++QHI +C ++
Sbjct: 228 -----HRREVTLLCRLWLRVAFTK-SYSFRIGMADNAVCEACGTEETLQHIFCDCPRYAV 281
Query: 434 SRNKW 438
R +
Sbjct: 282 QRRSF 286
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 73/172 (42%), Gaps = 29/172 (16%)
Query: 472 IAPW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAA 524
I PW L+VP I +KK LSS +K + Y+DGSKT
Sbjct: 10 IPPWCLIRPAVHLNVPGI-----KKKSELSSPVLKQLSL-----XXXHVHIYSDGSKTIR 59
Query: 525 NSGCAYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTD 582
+S A + FK + S ++EL A+ L + E R SIF TD
Sbjct: 60 SSSGAVVVPARGVTVSFKTDHPISSTAAELAALRTALCVL-----NREQPQRWSIF--TD 112
Query: 583 SKSSLLALKNIM--SP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
SK++L +L + + P LV I I+ V F W+PSH G+ GN
Sbjct: 113 SKAALQSLLSALRHGPYEQLVFEIRHLIHTSSEKGHQVTFQWLPSHCGVIGN 164
>gi|154271075|ref|XP_001536391.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409614|gb|EDN05058.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1139
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 126/311 (40%), Gaps = 53/311 (17%)
Query: 156 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 215
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 792 VKPWWRAPTVTIAEDREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 843
Query: 216 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
++ L E + V+++ELL I M L+ I + R IF TD++++L
Sbjct: 844 APPIHTQELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAAL 896
Query: 272 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-- 327
AL+N S ++ I+ + ++ + V+F WIP+H GI GN D+LA +
Sbjct: 897 RALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAMEATGCR 956
Query: 328 ------APLLSMMTSED-------------LKSAIKKKLLSEWHLHWKNNVINN---KLR 365
++++ T + KS I ++ +W W+N L
Sbjct: 957 QQRGRRGRMITVDTDDTAATPDFLRHLISAAKSEIHRQTQVQWERDWENESSGRATYALT 1016
Query: 366 RIKEDTLL-WKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLS 420
T+L S K IV ++R G L FL +R+ P LCE +
Sbjct: 1017 PAPSPTVLHLHHSLHKALSSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQT 1073
Query: 421 IQHILLECRKF 431
++H+LL C +F
Sbjct: 1074 VRHVLLACPRF 1084
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI 531
+ PW + I E E L + + A L YTDGS G A +
Sbjct: 792 VKPWWRAPTVTIAEDREAAERLHTHIISGA--------DPPLAVYTDGSGIHGKVGAAAL 843
Query: 532 TET--ESQVFKLYNENS--VFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
++ L E + V+++ELL I M L+ I ++ R IF TD++++L
Sbjct: 844 APPIHTQELAYLGKETTATVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAAL 896
Query: 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL+N S ++ I+ + ++ + V+F WIP+H GI GN
Sbjct: 897 RALQNPRRSSGQSILRRIIDALERVRSQGLQVEFYWIPAHQGIEGN 942
>gi|427784665|gb|JAA57784.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 455
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 80/328 (24%), Positives = 137/328 (41%), Gaps = 45/328 (13%)
Query: 161 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ-NSLFCYTDGSKTAANSGCAYITETE 219
LSVP I+ KK LS +A+K E + + YTDGS + +S A + +
Sbjct: 134 LSVPGIV-----KKARLSPLALKQFSLCLINETYFDRVHVYTDGSTNSNSSTGAVVVPSG 188
Query: 220 --SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI 277
S K + + ++EL A+ + +I IF DS+S+L L+
Sbjct: 189 DISMQLKFSHITTSTAAELGALQAAVKYILRQPPNQWAIF-------CDSRSALQTLQFA 241
Query: 278 MSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------ 328
+ LV I ++ V F W+PSH GIAGN + DE A+++
Sbjct: 242 LRHGLHEQLVYEIRHDYHQALENGHDVTFQWLPSHCGIAGNDRADEAARSAHEKDLQVPI 301
Query: 329 PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVI 388
PL + L+S ++ L +W+ N+++ I + L S RR E ++
Sbjct: 302 PLSRTDAARQLQSLARRLTLLQWN---TQGFSNSRVYSIYPNLQLRLPS-GLSRRDETLL 357
Query: 389 CRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISAL 447
CR+ +G + ++ L+ + C C + +I+HIL C ++ R +
Sbjct: 358 CRMWLGVAFTNAYSHLIGMANSAACNSCGREETIEHILCHCPSYQTHRR----------V 407
Query: 448 LGDDHDEIYKCIIISAQVIKRDEYIAPW 475
LG D + A+ + + + PW
Sbjct: 408 LGAKLDR------LDARPLSEKKILGPW 429
Score = 42.0 bits (97), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 477 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ-NSLFCYTDGSKTAANSGCAYITETE 535
LSVP I+ KK LS +A+K E + + YTDGS + +S A + +
Sbjct: 134 LSVPGIV-----KKARLSPLALKQFSLCLINETYFDRVHVYTDGSTNSNSSTGAVVVPSG 188
Query: 536 --SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI 593
S K + + ++EL A+ + +I IF DS+S+L L+
Sbjct: 189 DISMQLKFSHITTSTAAELGALQAAVKYILRQPPNQWAIF-------CDSRSALQTLQFA 241
Query: 594 MSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ LV I ++ V F W+PSH GIAGN
Sbjct: 242 LRHGLHEQLVYEIRHDYHQALENGHDVTFQWLPSHCGIAGN 282
>gi|391865317|gb|EIT74602.1| reverse transcriptase [Aspergillus oryzae 3.042]
Length = 428
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/328 (20%), Positives = 129/328 (39%), Gaps = 32/328 (9%)
Query: 52 LSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVS 111
L++ + A +ISGA++ + +L E P+ + + ++ R++ P
Sbjct: 2 LAEFAQIQKQAALLISGAFKGTAAAALNIELYILPVHLQLQQIIEETAVRIRTGPELACP 61
Query: 112 LILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYI-APWELSVPEIIYLT 170
+ + R R + ++ + R YI APWE P ++
Sbjct: 62 ESVLKPRTARERRRGGWTPMEALSWKGGPLWPLGEKKWETRKPYILAPWE---PPLV--- 115
Query: 171 SEKKENLSSVAVKNAFFQFKGE---NQNSLFCYTDGSKTAANSGCAYITETES----QVF 223
+ + A QF E + + YTDGS G + ++ + +
Sbjct: 116 -------AVIDSHEAALQFHKEYCARRQGIAVYTDGSGLNGRIGASAVSIAQGWIRNRTL 168
Query: 224 KLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN-- 281
E++V++ EL I M L H P IF DS++++ A++N P+
Sbjct: 169 GSEEESTVYAGELTGIRMAL-HKLRKEKTPATIF-------VDSQAAIQAVQNPRRPSGQ 220
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKS 341
++++ I I + N V+ WIP+H+G+ GN DE A+ ++ + +K
Sbjct: 221 YILDQIYYIIRRYNMQN-RVQIRWIPAHIGVPGNEAADEAAREGTQRTGEAICLAAAVKR 279
Query: 342 AIKKKLLSEWHLHWKNNVINNKLRRIKE 369
I++ + W WK R+ E
Sbjct: 280 QIRRSIKDRWIREWKTEKTGRTTYRLVE 307
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 32/174 (18%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGE---NQNSLFCYTDGSKTA 523
R YI APWE P ++ + + A QF E + + YTDGS
Sbjct: 102 RKPYILAPWE---PPLV----------AVIDSHEAALQFHKEYCARRQGIAVYTDGSGLN 148
Query: 524 ANSGCAYITETES----QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFI 579
G + ++ + + E++V++ EL I M L + + +IF+
Sbjct: 149 GRIGASAVSIAQGWIRNRTLGSEEESTVYAGELTGIRMALHKLRKEKTPA------TIFV 202
Query: 580 CTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
DS++++ A++N P+ ++++ I I + N V+ WIP+H+G+ GN
Sbjct: 203 --DSQAAIQAVQNPRRPSGQYILDQIYYIIRRYNMQN-RVQIRWIPAHIGVPGN 253
>gi|321461849|gb|EFX72877.1| hypothetical protein DAPPUDRAFT_325814 [Daphnia pulex]
Length = 308
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/314 (23%), Positives = 128/314 (40%), Gaps = 36/314 (11%)
Query: 69 AYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNP-----VSLILTHAQLGRNI 123
A R++P+E LY+E G L R K+L Y + P+NP V+L T Q
Sbjct: 3 AKRSTPVEMLYSETGTESLSWRTKLLTRKYLVNLSHKPNNPMHKPLVTLATTTTQWK--- 59
Query: 124 NRANLPRTVKSRLEDLQIFDRI-----SAQVIKRDEYIAPWELSVPE--IIYLTSEKKEN 176
PR+ +++ + S Q+ Y P P+ + K++
Sbjct: 60 -----PRSTPGLIKEFVFVKSLGISLFSQQLRLPSTYKYPPPSRPPDCKTSWFPLNKEQA 114
Query: 177 LSSVAVKNAFFQF--KGENQNSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENS 230
++ + F S+ YTDGSK+++ + CA + + L +S
Sbjct: 115 MACRHRTTSLFNTLDSSAPATSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSS 174
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVK 290
+F++E+ AI+ L + P +++ S + N +S N + I
Sbjct: 175 IFTAEVTAIYQALKLFYDMDDCPP----EAIIYSDSSSAITAISSNSLSENEAITAIREI 230
Query: 291 INELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAI-KKKLLS 349
I LK + WIPSH GI GN + D LA N E++ S++ K+++S
Sbjct: 231 IASLKSSGTRTRLTWIPSHTGIEGNERADRLAATECNT-----QDGEEVHSSLSPKEMVS 285
Query: 350 EWHLHWKNNVINNK 363
+W N++ N+
Sbjct: 286 IIRANWATNLLRNQ 299
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 511 NSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L Y
Sbjct: 135 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDM- 193
Query: 567 SRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 626
+ ++I S + N +S N + I I LK + WIPSH
Sbjct: 194 ---DDCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHT 250
Query: 627 GIAGN 631
GI GN
Sbjct: 251 GIEGN 255
>gi|425780653|gb|EKV18659.1| hypothetical protein PDIG_09730 [Penicillium digitatum PHI26]
Length = 501
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/323 (21%), Positives = 135/323 (41%), Gaps = 58/323 (17%)
Query: 156 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQ--FKGENQNSLFCYTDGSKTAANSGCA 213
+APWE +P I E +E +++ NA ++ + + +TDGS A + G +
Sbjct: 129 LAPWETPIPCFI----ENQE--AALKTHNALYEDTLCDQQDRASMLFTDGSGFAGHIGAS 182
Query: 214 YIT-----ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268
++ ++ + ++++V+++EL I M L+ ++R V I +DS+
Sbjct: 183 MVSLQQGVSSQRRYLGTDSQSTVYAAELSGIEMALAKAKKEQAR-------EVIIFSDSQ 235
Query: 269 SSLLALKNIMSPNHLVNNILVKI----------NELKILNITVKFLWIPSHLGIAGNVQV 318
+++ A++N P+ IL +I N+++ V WIP+H+G++GN
Sbjct: 236 AAIQAVQNPKRPSG--QYILTRIYDHLRAIRSRNQVQQEPTIVTIRWIPAHVGVSGNEYA 293
Query: 319 DELAKNSQ--NAPLLSMMTSED-------LKSAIKKKLLSEWHLHWKNNVINNKLRRIKE 369
D AK + A + + S D L +A K+ + W+ + +R+ +
Sbjct: 294 DTEAKGAALLGAGIGTTTGSGDPGRPTIRLAAAAKRAVRQRVRERWERETTSAPTKRLVQ 353
Query: 370 DTLLWKSSFDKDRRKE---------------IVICRLRIGHSHLTHNFLLKREDPPLCEW 414
+ S +K I + +RIG H D LC+
Sbjct: 354 VPNXSQESMQAPNKKTLRLYEGLSKPQCAILIQMRTMRIGLRHFLFKIKAAETDRCLCD- 412
Query: 415 CNVQLSIQHILLECRKFRASRNK 437
+ +HIL++C ++ R K
Sbjct: 413 -EGSQTPKHILMQCPRYTIPRTK 434
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 85/177 (48%), Gaps = 32/177 (18%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQ--FKGENQNSLFCYTDGSKTAANSGCA 529
+APWE +P I E +E +++ NA ++ + + +TDGS A + G +
Sbjct: 129 LAPWETPIPCFI----ENQE--AALKTHNALYEDTLCDQQDRASMLFTDGSGFAGHIGAS 182
Query: 530 YIT-----ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSK 584
++ ++ + ++++V+++EL I M L+ +R IF +DS+
Sbjct: 183 MVSLQQGVSSQRRYLGTDSQSTVYAAELSGIEMALAKAKKEQAREVIIF-------SDSQ 235
Query: 585 SSLLALKNIMSPNHLVNNILVKI----------NELKILNITVKFLWIPSHLGIAGN 631
+++ A++N P+ IL +I N+++ V WIP+H+G++GN
Sbjct: 236 AAIQAVQNPKRPSG--QYILTRIYDHLRAIRSRNQVQQEPTIVTIRWIPAHVGVSGN 290
>gi|427779423|gb|JAA55163.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 435
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 128/294 (43%), Gaps = 57/294 (19%)
Query: 156 IAPWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 212
+ PW L+ P I KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 213 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270
A + ++ FK + + ++EL A+ + L I + R++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 271 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
AL++++SP LV I + + L + F W+PSH GI GN + ++ A++
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGNERANQAARS 296
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLL------SEWH-LHWKNNVINNKLRRIKEDTLLWKSS 377
+ +++ +A K ++L S+W+ H+KN + S
Sbjct: 297 AHTESSQTLIPLSRTDAAWKIRVLARQCTVSQWNEPHFKNARLY---------------S 341
Query: 378 FDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKF 431
D LRI L+R D C+ C+ +IQHIL EC ++
Sbjct: 342 LDP-------TLSLRIPPG-------LRRADTAACDHCSGDETIQHILCECPQY 381
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEIIYLTS--EKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 528
+ PW L+ P I KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGIRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 529 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
A + ++ FK + + ++EL A+ + L I ++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+PSH GI GN
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLPSHCGIIGN 287
>gi|427784659|gb|JAA57781.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 128/294 (43%), Gaps = 29/294 (9%)
Query: 161 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ-NSLFCYTDGSKTAANSGCAYITETE 219
LSVP I+ KK +S +A+K + E + + YTDGS + +S A + ++
Sbjct: 133 LSVPGIV-----KKARMSPLALKQLSLRLLDETYFDRMHVYTDGSTNSNSSTGAVVLPSD 187
Query: 220 SQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI 277
+ F+ + + ++EL A+ + +I R IF DS+S+L AL+
Sbjct: 188 EVLLQFRYSHITTSTAAELAALQGAVKYILQQRPNRWAIF-------CDSRSALKALRLA 240
Query: 278 MSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------ 328
+ V I +E + F +PSH GI GN DE A+++ +
Sbjct: 241 LRHGLHEQSVYEIRHDYHEELEEGHDIIFELLPSHCGIVGNDHADEAARSAHDQDLRTPI 300
Query: 329 PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVI 388
PLL + L+S ++ L +W+ N +L I + L S RR E ++
Sbjct: 301 PLLRTDAARRLQSLARRIGLLQWN---TQGFYNARLCSIDPNLQLRLPS-GLSRRDETLL 356
Query: 389 CRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLK 441
CR+ +G + ++ L+ C C + +++HIL C ++A R K
Sbjct: 357 CRMWLGVAFTNAYSCLIGMASSAACNICACEETLEHILCHCPSYQAQRRGMEAK 410
>gi|307189101|gb|EFN73572.1| hypothetical protein EAG_08495 [Camponotus floridanus]
Length = 246
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 204 SKTAANSGCAYITE--TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSV 261
SK+ + G A+ + + +KL S+FS+E +AI + +I E I R ++
Sbjct: 1 SKSLPHLGAAFYSPDIPIQKKYKLDRYFSIFSAECIAIMCAMDYILE-----EGIKRSAI 55
Query: 262 FICTDSKSSLLALKNIMSPNHLVNNILVKINELK---ILNITVKFLWIPSHLGIAGNVQV 318
F TDS+S + L N + L IL N+L+ + N+ V +W+PSH+GI GN
Sbjct: 56 F--TDSRSMVETLSNGLLDRDLSYLILALKNKLRSAYVQNLDVVIVWVPSHVGILGNETA 113
Query: 319 DELAKNS--QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLL--- 373
D LA + Q + + DL S +K+K S+ K + +++R + +L
Sbjct: 114 DLLAGEAARQEESVDYLPPHTDLYSLVKEKYFSDIE---KYLLAQSEIRGAQYFSLYPPF 170
Query: 374 ----WKSSFDKDRRKEIVICRLRIGHSHLTHNF----LLKREDPPLCEWCNVQLSIQHIL 425
W + D R + ICR+R H +L + L++R D C I H+L
Sbjct: 171 ARKPWFAGLDLSRAEITTICRIRSNHYNLNFSLYRCGLVRRPD---CLCGLPYQDINHVL 227
Query: 426 LECRKF 431
C F
Sbjct: 228 WSCPMF 233
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 520 SKTAANSGCAYITE--TESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSI 577
SK+ + G A+ + + +KL S+FS+E +AI + +I E I R +I
Sbjct: 1 SKSLPHLGAAFYSPDIPIQKKYKLDRYFSIFSAECIAIMCAMDYILE-----EGIKRSAI 55
Query: 578 FICTDSKSSLLALKNIMSPNHLVNNILVKINELK---ILNITVKFLWIPSHLGIAGN 631
F TDS+S + L N + L IL N+L+ + N+ V +W+PSH+GI GN
Sbjct: 56 F--TDSRSMVETLSNGLLDRDLSYLILALKNKLRSAYVQNLDVVIVWVPSHVGILGN 110
>gi|427791283|gb|JAA61093.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 858
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 45/67 (67%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K +K +NILK+L+ WG R CL+ L+ + + +DYGA+IY SAT S+L L+ V+H
Sbjct: 792 KCIKTMNILKLLSRTAWGSDRKCLISLYKSLILTRLDYGAIIYQSATPSALKMLDPVHHL 851
Query: 62 ALRIISG 68
+R+ +G
Sbjct: 852 GIRLSTG 858
>gi|1549144|dbj|BAA07467.1| ORF2 [Bombyx mori]
Length = 1162
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 180/451 (39%), Gaps = 78/451 (17%)
Query: 5 KAINILKVLNNKT---WGLSRACLLRLFYAFVRPIMDYGAVIYGSATQ--SSLSKLNTVY 59
KAI + K+L WGLS + ++ A V P + Y A ++ + +LN +
Sbjct: 735 KAIGMYKILARTARVGWGLSPEVIRVIYVAVVEPTVLYAAAVWHESVYKLGVQKQLNVIQ 794
Query: 60 HTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQL 119
+ + AYRT + S G PL+ R + + L A+
Sbjct: 795 RGFAQKLCRAYRTVSLNSALLMAGILPLDLRVREAAS-----------------LFEAKK 837
Query: 120 GRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSS 179
G +S L D +I +R+S+ + + P E E L E+
Sbjct: 838 G----------VCQSWLGDREI-ERMSSAM----DAPHPAEQQSLEFGNLVDEE------ 876
Query: 180 VAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCA---YITETESQVFKLYNEN--SVFSS 234
Q+ N + +TDGSK G A + E E + KL +V+ +
Sbjct: 877 --------QYNNLNHLDVRIFTDGSKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQA 928
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVF-ICTDSKSSLLALKNIMSPNHLVNNILVKINE 293
ELLA+ + + + S F + +DSK++LL + N S + L +I + +
Sbjct: 929 ELLALSYAV--------KEAQLRNGSTFGVFSDSKAALLTVINHGSLHPLAVDIRKMLKQ 980
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKN----SQNAPLLSMMTSEDLKSAIKKKLLS 349
+ N TV WI +H G+ GN + D+LAK S+ +P + +K I+ L
Sbjct: 981 CALQNKTVALYWIKAHAGLEGNERADQLAKEAALLSKKSPNYDLCPVSYVKRIIRSGSLD 1040
Query: 350 EWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIV--ICRLRIGHSHLTH---NFLL 404
EW+ ++++ + + D + +++ R+ I I + GH + F
Sbjct: 1041 EWNRRYRDSDRASVTKMFFPDAV---AAYSTVRKMRITGHITQFTTGHGGFSEYLARFKC 1097
Query: 405 KREDPPLCEWCNVQLSIQHILLECRKFRASR 435
K + CE + +++H+L C F R
Sbjct: 1098 KGDPSCACE-PGMPETVEHLLTSCPIFGKQR 1127
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 12/133 (9%)
Query: 504 QFKGENQNSLFCYTDGSKTAANSGCA---YITETESQVFKLYNEN--SVFSSELLAIFML 558
Q+ N + +TDGSK G A + E E + KL +V+ +ELLA+
Sbjct: 877 QYNNLNHLDVRIFTDGSKIEGRVGAALSIWDGEVEIRSLKLALAPYCTVYQAELLALSYA 936
Query: 559 LSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 618
+ + T +F +DSK++LL + N S + L +I + + + N TV
Sbjct: 937 VKEAQLRNGSTFGVF-------SDSKAALLTVINHGSLHPLAVDIRKMLKQCALQNKTVA 989
Query: 619 FLWIPSHLGIAGN 631
WI +H G+ GN
Sbjct: 990 LYWIKAHAGLEGN 1002
>gi|242825355|ref|XP_002488423.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712241|gb|EED11667.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1181
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 100/461 (21%), Positives = 175/461 (37%), Gaps = 84/461 (18%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 684 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 743
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRN------- 122
E P +A Y R+ P ++P + IL AQ G
Sbjct: 744 IREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGDLRAQPGEQPLDDREW 803
Query: 123 INRAN-LPRTVKSRLED--LQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSS 179
+R N +P + RL Q +R + I+R E E K S
Sbjct: 804 ASRDNRMPNRLGQRLAKHLAQRLNRDPSGGIERTERC---------------ELKSFPGS 848
Query: 180 VAVKNAFFQFKGENQNSLFC--YTDGSKTAANSGCAYIT-------ETESQVFKLYNENS 230
+ V + NQ L ++DGS+ A + E + + +
Sbjct: 849 IRVLDNEEALTEANQQRLGTTFWSDGSRLDTGRAGAGVALQAIPGGPWEHVEVPMGHGHE 908
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNIL 288
VF +EL+ + L E ++I D+++++ LK+ P LV
Sbjct: 909 VFDAELMGVATALEWAL------ERQPLGPIWILLDAQNAIDRLKSARPGPGQALVLRAH 962
Query: 289 VKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA--- 342
+ +L + V W+P H G+ GN Q D+ AK + Q AP ++ ++ A
Sbjct: 963 RAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVRRACTE 1022
Query: 343 IKKKLLSEWH-----LHWKNNVINNKLRRIKEDTLL-WKSSFDKDRRKEIVICRLRIGHS 396
++ +SEW L+ ++ R ++ TL W+ KD
Sbjct: 1023 ARRAAVSEWARVESTLYEAGIEMDVSTRCLEAGTLTQWREKPQKD--------------- 1067
Query: 397 HLTHNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASRN 436
+L+ R + P C+ C +++H+L ECR R R
Sbjct: 1068 -----WLVGRRESPECQACKEPHETVRHVLFECRGRRTGRR 1103
>gi|242827044|ref|XP_002488757.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712149|gb|EED11576.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 189/468 (40%), Gaps = 58/468 (12%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY-------GSATQSSLSK 54
K+ ++ L+ L+ TWG++ + R++ A V P M YGA + ++ K
Sbjct: 1456 KAGTSLEALRGLSGSTWGVALGSMRRIYQAIVIPQMLYGAAAWFQPDLMSQRQITQTVRK 1515
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
T+ A +ISGA+RT+ E+L E P+ + L R++ P+ + L
Sbjct: 1516 FTTIQKRAACLISGAFRTTAAEALNIELHLMPIRLQLDQLTKAVAIRIRTGPAFAIPDGL 1575
Query: 115 THAQLGRNINRAN-LPRTVKSRLED---LQIFDRISAQVIKRDEYI-APWELSVPEIIYL 169
+ + + P + + L ++ + R Y+ APW P+++
Sbjct: 1576 VNRRTSGELKLGGYTPMEAHAWKKGGCLLAPPGTLAGKWESRSAYVQAPWH-EPPKVVID 1634
Query: 170 TSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNEN 229
EK +V+V N K E+ + YTDGS G S VF+ ++EN
Sbjct: 1635 EREK-----AVSVHNDIT-CKNEH---IAIYTDGSGYQGYIGA-------SMVFQ-HSEN 1677
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNI 287
+ +E+ I L + I + I +DS+++L L N+ +S +
Sbjct: 1678 NE-RTEVCGIKFALETALQIAD--QDIRTKKLVIFSDSQAALKTLMNLRMVSGQTYIQGC 1734
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDE-------LAKNSQNAPLLSMMTSED-- 338
+ + + +I V WIP H G+ GN D + Q P ++SE
Sbjct: 1735 VDSLRKCTDEDIDVTLRWIPGHEGVPGNEAADRAAKRAALMGARRQIVP--GDLSSEGWT 1792
Query: 339 -LKSAIKKKLLSE----WHLHWKNNVINNKLRRI----KEDTLLWKSSFDKDRRKEIVIC 389
L +A K+++ W W +++ + TL + + K ++
Sbjct: 1793 ILAAAAKRRIRQSTKDAWERRWDKQKAGKPTKKLVTQPSKRTLQYWTFLRKATSSILIQL 1852
Query: 390 RL-RIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
R RIG +H + + + R + P C S++HIL+EC + R
Sbjct: 1853 RTERIGLAH--YLWRINRREQPYCACGLSGQSVRHILMECPLYENERG 1898
>gi|427779393|gb|JAA55148.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 424
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 20/243 (8%)
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 218
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 219 ES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
+KL + ++ SEL A+ ++HI + + R +VF DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHI-----KEQPANRWAVFC--DSKAALQCLSS 240
Query: 277 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-APLLS 332
+ S LV I ++ + V F W+PSH GI+GN DE A+ + L+S
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVS 300
Query: 333 MMTSEDLKSAIKKKLLSEWHLH-WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRL 391
+ S + KL L W+ + ++ + +L + R ++ V+CRL
Sbjct: 301 IPLSRIDAARYLSKLAQNMTLQMWRTSQFTDQRLYSLDPSLRLRLLPGLSREEDTVLCRL 360
Query: 392 RIG 394
R+G
Sbjct: 361 RLG 363
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 535 ES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+KL + ++ SEL A+ ++HI + +F DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVF-------CDSKAALQCLSS 240
Query: 593 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S LV I ++ + V F W+PSH GI+GN
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGN 282
>gi|427780533|gb|JAA55718.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 380
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 20/243 (8%)
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 218
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 219 ES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
+KL + ++ SEL A+ ++HI + + R +VF DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHI-----KEQPANRWAVFC--DSKAALQCLSS 240
Query: 277 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN-APLLS 332
+ S LV I ++ + V F W+PSH GI+GN DE A+ + L+S
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGNDLADEAAREAHGETSLVS 300
Query: 333 MMTSEDLKSAIKKKLLSEWHLH-WKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRL 391
+ S + KL L W+ + ++ + +L + R ++ V+CRL
Sbjct: 301 IPLSRIDAARYLSKLAQNMTLQMWRTSQFTDQRLYSLDPSLRLRLLPGLSREEDTVLCRL 360
Query: 392 RIG 394
R+G
Sbjct: 361 RLG 363
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 18/162 (11%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 535 ES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+KL + ++ SEL A+ ++HI + +F DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVF-------CDSKAALQCLSS 240
Query: 593 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S LV I ++ + V F W+PSH GI+GN
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCGISGN 282
>gi|328700126|ref|XP_001944214.2| PREDICTED: alcohol dehydrogenase [NADP+]-like [Acyrthosiphon pisum]
Length = 514
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 29 FYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLE 88
F + I+DYG+ +Y ++ ++L+ L +++ LR+ SGA+R+SPI S+ G+ PL
Sbjct: 305 FTMIKKSILDYGSPLYMTSRNTALTMLEAIHNADLRMASGAFRSSPINSILNITGEQPLN 364
Query: 89 TRRKILLANYGTRVKCNPSNPV 110
RR L+ Y R +P+ P
Sbjct: 365 NRRNQLMLQYAVRTATDPNKPT 386
>gi|407915534|gb|EKG09113.1| hypothetical protein MPH_13896 [Macrophomina phaseolina MS6]
Length = 288
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 31/225 (13%)
Query: 230 SVFSSELLAIFMLLS----HICNTRSRPEYIFRDSVFICTDSKSSLLAL--KNIMSPNHL 283
+VF+++L AI M L + + R + + TD++++L AL S +L
Sbjct: 14 TVFAAKLWAIEMALDLADVETAHNKRR--------IALFTDNQAALRALVTPGEQSEQYL 65
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN------------APLL 331
+ +I K+ L+ +++KF W+PSH G+ GN + D+LAK + P +
Sbjct: 66 LRSITPKLTGLQQQGVSIKFHWVPSHRGVPGNEEADKLAKAAAQERRTLEAERCMTGPHV 125
Query: 332 SMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--VIC 389
LK AI + ++ EW WK++ +L ++ + + + + + ++
Sbjct: 126 QPSLVAALKQAINQAVMDEWKQLWKDSERGRQLFKVAPEPSRKILTLHRGTSRALSSLMV 185
Query: 390 RLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQ---HILLECRKF 431
++R G L H L+R C+ +Q H+ C KF
Sbjct: 186 QMRTGKIGLRHFLHLRRVPGVTSGVCDCGRGLQTVSHVRYSCSKF 230
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 6/88 (6%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLAL--KNIMSPNHLVNNI 603
+VF+++L AI M L ++ + I + TD++++L AL S +L+ +I
Sbjct: 14 TVFAAKLWAIEMALDLADVETAHN----KRRIALFTDNQAALRALVTPGEQSEQYLLRSI 69
Query: 604 LVKINELKILNITVKFLWIPSHLGIAGN 631
K+ L+ +++KF W+PSH G+ GN
Sbjct: 70 TPKLTGLQQQGVSIKFHWVPSHRGVPGN 97
>gi|357622609|gb|EHJ74035.1| putative pol-like protein [Danaus plexippus]
Length = 836
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
++L A N+LK L WG LL L+ + VR +Y + + + + KL + +
Sbjct: 608 RALNACNVLKSLTGTYWGADPRILLTLYKSLVRSHFEYAYFCF-AGVGTIVDKLEKIQNK 666
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHA 117
LRII GA RT+PI S+ E PPL R K L + + R+ ++P+ + L H
Sbjct: 667 CLRIIMGAMRTTPIVSMQVECNIPPLALRFKYLQSKFFARLLSISNHPLLVKLRHT 722
>gi|427791505|gb|JAA61204.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1017
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 26/277 (9%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ +A+ +L+ ++N+ +G+ R ++ L+ ++RPI+++G +++ L +
Sbjct: 735 KAQRALGLLRRMSNRKYGVRRDTMIMLYKMYMRPILEFGCILFSGGPAYKTKPLVLLERE 794
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP---------SNPVSL 112
ALR+ G R + I +Y E P L R +IL + P S+P S
Sbjct: 795 ALRLCLGLPRFAAINVMYQEARLPTLLCRFRILTVQTFLKFYSLPERRSAYVFISDPDSF 854
Query: 113 ILTHAQLGRNINRANLPRT--VKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLT 170
L H R + P+ V+ +LE + + R ++I + Y + + EI
Sbjct: 855 FLAHWP------RFHTPQIIFVQKKLESINVNIR---EIIPTNSYNQNVTIELDEIFPPN 905
Query: 171 SEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVF--KLYNE 228
S+ + S +KN + + TD S +G ++ + F +L +
Sbjct: 906 SKFQ---SHKFLKNRLDDYLVHAKTKNIIATDASVNDERAGVGIVSHSLGWSFAVRLPDC 962
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICT 265
VF +EL+AI + L + T + I DS+ +CT
Sbjct: 963 TPVFEAELMAIILSLRKL-PTDANSALIITDSLSVCT 998
>gi|380484386|emb|CCF40032.1| zinc knuckle [Colletotrichum higginsianum]
Length = 445
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNEN---- 229
K+N+ ++ + Q + EN ++ YTDGS G A + T Q Y +
Sbjct: 115 KQNIDTINRLGSIEQREDENTEAIHIYTDGSGINGYIGAAAVCITTYQTRNSYMGSDAIS 174
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLL--ALKNIMSPNHLVNNI 287
+V++ EL I + L R R R V I TD+++++ A S ++L+ I
Sbjct: 175 TVYAGELQGIILALEIAEEDRQRGNN--RSKVLIYTDNQAAIRSSARPKGKSGSYLLQTI 232
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
VK +L+ + + W+P+H GI GN D+ AK +
Sbjct: 233 AVKTQKLQEQGLKTEIRWVPAHTGIQGNEDADKAAKEA 270
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 490 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNEN---- 545
K+N+ ++ + Q + EN ++ YTDGS G A + T Q Y +
Sbjct: 115 KQNIDTINRLGSIEQREDENTEAIHIYTDGSGINGYIGAAAVCITTYQTRNSYMGSDAIS 174
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLL--ALKNIMSPNHLVNNI 603
+V++ EL I + L + R R + I TD+++++ A S ++L+ I
Sbjct: 175 TVYAGELQGIILALE--IAEEDRQRGNNRSKVLIYTDNQAAIRSSARPKGKSGSYLLQTI 232
Query: 604 LVKINELKILNITVKFLWIPSHLGIAGN 631
VK +L+ + + W+P+H GI GN
Sbjct: 233 AVKTQKLQEQGLKTEIRWVPAHTGIQGN 260
>gi|321452687|gb|EFX64016.1| hypothetical protein DAPPUDRAFT_118610 [Daphnia pulex]
Length = 269
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 16/220 (7%)
Query: 37 MDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLA 96
MDYGA+ YGSA+++SL +++ V LR I GA R++P+E LY+E G L R K+L
Sbjct: 1 MDYGAIAYGSASKTSLERVDVVGRAILRNIMGANRSTPVEMLYSETGTESLSWRTKLLTR 60
Query: 97 NYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRD--- 153
Y + P+N + L QL + PR+ +++ + ++ +
Sbjct: 61 KYLLNLSHKPNNQMHKPL--VQLATTTTQWK-PRSTPGLIKEFVFVKSLGISLVSQQLRL 117
Query: 154 ----EYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQF--KGENQNSLFCYTDGSKTA 207
+Y P + + K++ ++ + F S+ YTD SK++
Sbjct: 118 PSTYKYPPPSRPPDCKTSWFPLNKQQAMACRHRTTSLFNTLDSSAPATSIRAYTDRSKSS 177
Query: 208 AN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLL 243
+ + CA + + L +S+F++++ AI+ L
Sbjct: 178 SQETTTCAIFIPVLNKEHAWTLTKGSSIFTAKVTAIYQAL 217
>gi|358376063|dbj|GAA92634.1| hypothetical protein AKAW_10748 [Aspergillus kawachii IFO 4308]
Length = 399
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 23/159 (14%)
Query: 293 ELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSEDLKSAIKKKLL 348
ELK I ++ W+P H G GN D LAK + A P +++ E K+ I+ +
Sbjct: 180 ELKARGIPLRLQWVPGHCGNPGNETADRLAKEAVGAEKKHPFQHLLSRE--KAFIRNTIK 237
Query: 349 SEWHLHWKNNVINNKLRRIKE-----DTLLWKSSFDKDRRKEIVICRLRIGHSHLT---- 399
SEW WK + LRR+ T S ++R ++ +LR GHS L
Sbjct: 238 SEWEQEWKTSKNGGHLRRMNRALPACRTRRLYGSLPRNR--AYLLAQLRTGHSWLATYAK 295
Query: 400 -HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
H F D CE C ++ H+L++C + A R +
Sbjct: 296 QHGF----RDNEQCE-CGATETVVHVLVDCPRLSALRQE 329
>gi|156046148|ref|XP_001589626.1| hypothetical protein SS1G_09348 [Sclerotinia sclerotiorum 1980]
gi|154693743|gb|EDN93481.1| hypothetical protein SS1G_09348 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 806
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/333 (21%), Positives = 138/333 (41%), Gaps = 42/333 (12%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
G+ + +L+ A+V I DYG++++ L ++ + ALR I ++TSPI+ +
Sbjct: 424 GICPKTMRQLYIAYVTSIADYGSILWWKRQNQFKKILQSLQNLALRKILEVFKTSPIKPM 483
Query: 79 YAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
E P E + + Y R +K +PS+PV+L+ T + N+ + + +L+
Sbjct: 484 KIEAVLYPPEVQLNAGIKQYAFRLLKISPSHPVNLVATKLATEKE-NQDVVATPQRKQLK 542
Query: 138 DLQI----------FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFF 187
Q+ FD ++ + I Y PW+ VP + ++ KE + + N F
Sbjct: 543 PTQLEKIKNSIQKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAAMIHNLAF 599
Query: 188 QFKGENQNSLFCYTDG-------------SKTAANSGCAYITETESQVFKLYNENSVFSS 234
+++ +N + Y D N +Y ++ + V++S
Sbjct: 600 KYRC--KNIIIIYIDALSILEGIGVGVGIVIILPNGRISY-----QEIINIGVNQFVYNS 652
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVKINE 293
ELL + + + + R + I +D+++ L LK P +K E
Sbjct: 653 ELLGVTKAIEYANSITQR-----GNKFKIYSDNQAGLFRLKTPFDLPGQSCQIKAIKAAE 707
Query: 294 -LKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
++ + W+P H + GN D LAK +
Sbjct: 708 AIQNKGAEISLNWVPGHTSVQGNELADSLAKEA 740
>gi|427791847|gb|JAA61375.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 928
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 25/237 (10%)
Query: 200 YTDGSKTAANSGCAYITETE---SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYI 256
+TD S +S A T + + +L S ++EL+ I + I R P+ +
Sbjct: 703 FTDASVLQDHSAAAACTAPQLALKRQCRLVYRASSTTAELVGIHLAADLI---RESPQ-V 758
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
R ++F TDS+S+L L L + ++ L+ V WIPSH+GIAGN
Sbjct: 759 SRAAIF--TDSRSALRQLAKEDRAPPLAERVAWSLHSLREYGCDVALQWIPSHVGIAGNE 816
Query: 317 QVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKN--NVINNKLRRIKEDTLLW 374
D+LAK + + P + + T D + ++ L E + + + R + E TL
Sbjct: 817 AADDLAKAAHD-PAVPLTTCADSADSARQNLRREIVRNHPDERTAAGSPPRHLPESTLT- 874
Query: 375 KSSFDKDRRKEIVICRLRIGH---SHLTHNFLLKREDPPLCEWCNVQLSIQHILLEC 428
R++ + LR G + L H L+ PLC C + ++ H+ L C
Sbjct: 875 -------RKERSFLLALRTGSVWPAELRHR--LRGALSPLCHDCGERETMAHLFLFC 922
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 516 YTDGSKTAANSGCAYITETE---SQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYI 572
+TD S +S A T + + +L S ++EL+ I + I + +
Sbjct: 703 FTDASVLQDHSAAAACTAPQLALKRQCRLVYRASSTTAELVGIHLAADLIRESPQ----V 758
Query: 573 FRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
R +IF TDS+S+L L L + ++ L+ V WIPSH+GIAGN
Sbjct: 759 SRAAIF--TDSRSALRQLAKEDRAPPLAERVAWSLHSLREYGCDVALQWIPSHVGIAGN 815
>gi|443734398|gb|ELU18400.1| hypothetical protein CAPTEDRAFT_213104 [Capitella teleta]
Length = 330
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 197 LFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
+ YTDGSK ++ G + S ++ + VF++E AI L + + P
Sbjct: 152 ILAYTDGSKQGSSVGYGFTIPAYNISTSVRISDCTDVFTAEAKAIEACLMLLAQRQISP- 210
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I +DS S L A++N S + ++++I V +N N+ V FLWIPSH GI G
Sbjct: 211 ------VTILSDSLSVLEAMQN-TSSSTVISDIQVALNVAANSNVDVSFLWIPSHCGIQG 263
Query: 315 NVQVDELAKNS 325
N D LAK S
Sbjct: 264 NEAADALAKAS 274
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 16/124 (12%)
Query: 513 LFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVFSSELLAI---FMLLSHIYSTSS 567
+ YTDGSK ++ G + S ++ + VF++E AI MLL+ +
Sbjct: 152 ILAYTDGSKQGSSVGYGFTIPAYNISTSVRISDCTDVFTAEAKAIEACLMLLAQRQISP- 210
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
+ I +DS S L A++N S + ++++I V +N N+ V FLWIPSH G
Sbjct: 211 ---------VTILSDSLSVLEAMQN-TSSSTVISDIQVALNVAANSNVDVSFLWIPSHCG 260
Query: 628 IAGN 631
I GN
Sbjct: 261 IQGN 264
>gi|212536822|ref|XP_002148567.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210070966|gb|EEA25056.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 2083
Score = 62.4 bits (150), Expect = 7e-07, Method: Composition-based stats.
Identities = 101/467 (21%), Positives = 191/467 (40%), Gaps = 47/467 (10%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---GSATQSSLSKLN-- 56
K+ ++ L+ L TWG++ + +++ A V P M YGA + G+ TQ+ ++ +
Sbjct: 1498 KAGTSLEALRGLAGSTWGVALGSMRQIYQAIVIPQMLYGAAAWFQPGNMTQAYITAITRD 1557
Query: 57 --TVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPS----NPV 110
T+ A +ISGA+RT+ E+L E P+ + L R++ P+ N +
Sbjct: 1558 FATIQKRAACLISGAFRTTAAEALNIELHLLPIRYQLDQLTKATAIRIRTGPAHGIPNGI 1617
Query: 111 SLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYI-APWELSVPEIIYL 169
+ T +L K+ ++ + RD Y+ PW P ++
Sbjct: 1618 LIRRTDDELALGGYTPMEAHAWKTGGCLTAPPGTLAGEWESRDAYVQTPWR-EPPNVVIN 1676
Query: 170 TSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI----TETESQVFKL 225
E ++ + VK EN L YTDGS G + + ++ +Q
Sbjct: 1677 EREVAVSVHNRTVK--------ENSRVLI-YTDGSGYQGYIGTSMVMPQFSKQVTQCIGT 1727
Query: 226 YNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN--IMSPNHL 283
+ ++V ++E I L + E + + ++F +DS+ +L AL++ ++S
Sbjct: 1728 EDTSTVNAAEACGIKFALETVLRFADDDERLKKVAIF--SDSQPALKALRSPRMVSGQTY 1785
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK--- 340
+ + + E +I V WIP H G+ GN D AK + + D+K
Sbjct: 1786 IRDCINLYQECIENDIDVVLHWIPGHEGVPGNEAADRAAKRAALMGARRQIVPGDIKNWI 1845
Query: 341 ---SAIKKKLLSE----WHLHWKNNVINNKLRRI----KEDTLLWKSSFDKDRRKEIVIC 389
+A K+++ E W W +++ + TL + K ++
Sbjct: 1846 MLAAAAKRRIRQETKKAWEKSWDKQKSGKPTKKLVPKPSKRTLQYWMYLRKATSSILIQL 1905
Query: 390 RL-RIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
R R+G H + + + + + P C S++H LL+C + R
Sbjct: 1906 RTERVGLGH--YLWRINKRENPFCACGLSGQSVKHALLDCPLYADER 1950
>gi|342869519|gb|EGU73183.1| hypothetical protein FOXB_16307 [Fusarium oxysporum Fo5176]
Length = 609
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 37/301 (12%)
Query: 46 SATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
S+ Q + ++N + ++R I ++T+PI L+ E+G PP++ + + R+K
Sbjct: 244 SSNQHLIQRMNKALNQSMRAIVPVWKTTPITILHRESGIPPVDQLLEARRLRFSARLK-- 301
Query: 106 PSNPVSLILTHAQLGRNINRANLPRTVK-----SRLEDLQIFDRISAQVIKRDEYIAPWE 160
SL TH + RA PR R Q ++ + DE + +
Sbjct: 302 -----SLDDTHPL----VRRAAPPRQPTYHDLIKRKYQAQAESSFRTRLRRTDELLG--Q 350
Query: 161 LSVPEIIY--LTSEKKENLSSVA---VKNAFFQF-KGENQNSLFCYTDGS---KTAANSG 211
+ P++I E+ L + + AF ++ K + +L Y+DGS K A+ G
Sbjct: 351 CARPKLIQKRFQQEQMPPLQTASKEKTAEAFLRWVKSLDPLTLVVYSDGSLSEKGVASYG 410
Query: 212 CAYITETESQVFKLYNE---NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268
I + + +F + VF +E L N R ++FIC D+
Sbjct: 411 FT-IHQDDLPIFDGSDRLGPAEVFDAEATGALEGLKAALNLRESAT----QNIFICLDNL 465
Query: 269 SSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328
++ L+ +P+ +I ++ L + V+ W+P H I GN Q D+LAK + +
Sbjct: 466 AAATCLQG--TPSDSSQHIFLEFQALVTSHGAVQVRWVPGHTDIPGNEQADKLAKAASSL 523
Query: 329 P 329
P
Sbjct: 524 P 524
>gi|242794525|ref|XP_002482393.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718981|gb|EED18401.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 523
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 110/259 (42%), Gaps = 31/259 (11%)
Query: 200 YTDGSKTAANSGCAYIT-------ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSR 252
++DGS+ A +T E + + + VF +EL+ + L
Sbjct: 196 WSDGSRLDTGRAGAGVTLQAVPKGPWEHVEVPMGHGHEVFDAELVGVATALEWAL----- 250
Query: 253 PEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHL 310
E D +++ D+++++ L++ P LV + +L + V W+P H
Sbjct: 251 -ERQPLDPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHS 309
Query: 311 GIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKL 364
G+ GN Q D+ AK + Q AP ++ +K A ++ +SEW + N + +
Sbjct: 310 GVVGNEQADQAAKRAASKQTAPGFEHLSLAYVKRACMEARRTAVSEWA---RINAVQGRH 366
Query: 365 R--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL-THNFLLKREDPPLCEWC-NV 417
R R+ + W + + + R L+ GH+ + T+ + R + P C+ C
Sbjct: 367 RDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLHRIGRRESPECQACKEP 426
Query: 418 QLSIQHILLECRKFRASRN 436
+++H+L ECR R R
Sbjct: 427 HETVRHVLFECRGRRTGRR 445
>gi|331229368|ref|XP_003327350.1| hypothetical protein PGTG_09899 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1673
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 100/447 (22%), Positives = 189/447 (42%), Gaps = 46/447 (10%)
Query: 17 TWGLSRACLLRLFYAFVRPIMDYGAVIYGSAT--QSSLSKLNTVYHTALRIISGAYRTSP 74
T+GL+ RL A + P + +G++I+ +A +++ L+ +++ A R+I+G ++ +P
Sbjct: 1191 TYGLNLQSARRLVSAVLYPRVLFGSLIWFTARNRKTASQVLDGLFYKASRLITGLFKQTP 1250
Query: 75 IESLYAENGQPPL-ETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVK 133
+ + +G L + K+ +++ + PS+PV+ L +L P +
Sbjct: 1251 LPFVKMSSGLKSLVDIHTKLSISHILKGLTREPSHPVAPFLL-KELTEAKPPFPSPLHLF 1309
Query: 134 SRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGEN 193
+ L+DL+ + I+ + PW V +I L K + AV+ Q E
Sbjct: 1310 TGLDDLRQHLEQQMESIQVSPF-PPWTDPVSKIFNLGIPKVK-----AVELVKKQIDEEM 1363
Query: 194 QN-SLFCYTDGSKTAANS--------GCAYITETESQVFKLYNENSVFSSELLAIFML-- 242
N +L +TDGS C++ ++S ++ S + +EL+ I +
Sbjct: 1364 GNGALLIFTDGSLIPGTGAGAAAVALNCSF---SDSVKIPSHHLISNYEAELIGIRLAIR 1420
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 302
L+ + P R ++F D++ +L + + + + + L+ L I V
Sbjct: 1421 LAKRIIWSAWPGKFNRVAIF--GDNQGALTQTADPLQSSPGQHIYADNFSSLRSLGIPVA 1478
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK------------SAIKKKLLSE 350
W P H G+A N Q D+LAK+ + + ED S +K+
Sbjct: 1479 LYWCPGHEGLAANEQADKLAKSE------AQHSEEDTAYAALCRPVPASLSKMKQACRPM 1532
Query: 351 WHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK-EIVICRLRIGHSHLTHN-FLLKRED 408
W + K R K D ++ D+ + I +LR H+ L H F +K+
Sbjct: 1533 WDHGPVLSTEERKRYRFKADPRPVIAALDEQAKGLTATILQLRADHAPLNHFLFKIKQTL 1592
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASR 435
P C C + + H L+ C+K+R R
Sbjct: 1593 DPRCTNCFERETAPHFLMFCKKYRIIR 1619
>gi|242786294|ref|XP_002480777.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720924|gb|EED20343.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 62.4 bits (150), Expect = 7e-07, Method: Composition-based stats.
Identities = 104/459 (22%), Positives = 189/459 (41%), Gaps = 65/459 (14%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 1484 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 1543
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRN------- 122
E P +A Y R+ P ++P + IL HAQ G
Sbjct: 1544 IREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQPLDDREW 1603
Query: 123 INRAN-LPRTVKSRLED--LQIFDRISAQVIKRDEYIAPWELS-VPEIIYLTSEKKENLS 178
+R N +P + RL Q +R + I+R E EL P I + +K+E L+
Sbjct: 1604 ASRDNKMPNRLGQRLAKHLAQRLNRDPSGGIERTEQC---ELQGFPGSIRVL-DKEEALT 1659
Query: 179 SVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET-------ESQVFKLYNENSV 231
+ A F ++DGS+ A +T E + + + V
Sbjct: 1660 EANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEV 1709
Query: 232 FSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILV 289
F +EL+ + L + +++ D+++++ L++ P LV
Sbjct: 1710 FDAELVGVATALEWALERQPL------GPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHR 1763
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAI--- 343
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A
Sbjct: 1764 AAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEA 1823
Query: 344 KKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL 398
++ +SEW + N + + R R+ + W + + V R L+ GH+ +
Sbjct: 1824 RRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGHAPI 1880
Query: 399 -THNFLLKREDPPLCEWCN-VQLSIQHILLECRKFRASR 435
T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 1881 GTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 1919
>gi|242794486|ref|XP_002482384.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718972|gb|EED18392.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1025
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 111/258 (43%), Gaps = 31/258 (12%)
Query: 200 YTDGSKTAANSGCAYIT-------ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSR 252
++DGS+ A +T E + + + VF +EL+ + L
Sbjct: 67 WSDGSRLDTGRAGAGVTLQAVPKGPWEHVEVPMGHGHEVFDAELVGVATALEWAL----- 121
Query: 253 PEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHL 310
E D +++ D+++++ L++ P LV +L + V W+P H
Sbjct: 122 -ERQPLDPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHRAAKKLALRGQPVTIQWVPGHS 180
Query: 311 GIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKL 364
GI GN Q D+ AK + Q AP ++ ++ A ++ +SEW + N + +
Sbjct: 181 GIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEARRAAVSEWA---QINAVQGRH 237
Query: 365 R--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL-THNFLLKREDPPLCEWC-NV 417
R R+ + W + + V R L+ GH+ + T+ + + + + P C+ C
Sbjct: 238 RDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGHAPIGTYLYRIGQRESPECQACKEP 297
Query: 418 QLSIQHILLECRKFRASR 435
+++H+L ECR RA R
Sbjct: 298 HETVRHVLFECRGRRAGR 315
>gi|443916292|gb|ELU37414.1| RNase H domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 835
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 100/454 (22%), Positives = 185/454 (40%), Gaps = 67/454 (14%)
Query: 28 LFYAFVRPIMDYGAVIY--GSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQP 85
LF A V PI+ YG ++ G S L L V + LR I GA+RT+P + P
Sbjct: 358 LFKASVTPILTYGLPLWFHGRRQLSLLEPLRKVQNQGLRWILGAFRTTPTRCMEHLASIP 417
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRA-----------NLPRTVKS 134
PL ++ N+ ++++ P T A++ R + ++ P +
Sbjct: 418 PLHIACLRIIENFASKLRSIP--------TLAEVARRLPQSWDSSTTPQPNPKSPIAFAA 469
Query: 135 RLEDLQIFDRISAQVIKRDEYIAPW--ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGE 192
L I + I+ ++ + PW +LS+ E ++K ++ ++N + +
Sbjct: 470 SLSHPDI-EFITPYLVHPSKPNNPWPDQLSIDEKSPSATKKA---AAKVIQNEIEEAESN 525
Query: 193 -NQNSLFCYTDGSKTAANS----GCAYITETESQVFKLYNEN-----SVFSSELLAIFML 242
N N++ ++DG + N G +I + Q+ + + +++ +E+L I +
Sbjct: 526 LNGNTIHSFSDGHAGSLNGVPKIGLGFIVKYGHQILARQSHSIGPRANIYDAEMLGIALC 585
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVNNILVK-----INELKI 296
L+ + S E + + I D+++++ A+ ++ P I + + +
Sbjct: 586 LN---RSVSIAEQVQAKRIIIYCDNQAAVKAISSLQRHPAQYAARIFHQHAQRFLEKDPN 642
Query: 297 LNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAIKKKLLSEWHL 353
+ITVK W+P H IAGN DELAK S Q P+ + T K+ K+ +W
Sbjct: 643 HHITVK--WLPGHSKIAGNELADELAKGSETLQPTPVFN-RTITWAKTMATKRTTRDWMK 699
Query: 354 HWKNNVINNKLRRIKEDTLLWKSS-------FDKDRRKEIVICRL-RIGHSHLTHNFLLK 405
W + I R T + + F++ V CRL + H +
Sbjct: 700 VWTEHTIT----RPDSGTFIPRPPALKLHPIFNRPTYPRNVQCRLVQFLTGHGFYGAYSA 755
Query: 406 REDP---PLCEWCNVQLSIQHILLECRKFRASRN 436
R P P C + +H+L+ C R+
Sbjct: 756 RFHPHIDPQCSCGEPSQTPEHLLMFCPDTEEHRH 789
>gi|443691275|gb|ELT93184.1| hypothetical protein CAPTEDRAFT_223991 [Capitella teleta]
Length = 391
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNV 359
V FLW PS++GI G+ D L K + P+ + ++ D K I + S W W +
Sbjct: 275 VVFLWCPSYVGILGDEVADRLTKQALVMPVTDLPLSHSDFKYPICSIVKSFWQSEWDDET 334
Query: 360 INNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLT 399
NKL ++ KDRR+EIV+ RIGHSHLT
Sbjct: 335 -ENKLHSVQPVISERNKGIRKDRREEIVLTSARIGHSHLT 373
>gi|154270037|ref|XP_001535890.1| hypothetical protein HCAG_09166 [Ajellomyces capsulatus NAm1]
gi|150413780|gb|EDN09159.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 331
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 41/233 (17%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM--SPNHLVNNI 287
+V+++ELL I M L+ I + R IF TD++++L AL+N S ++ I
Sbjct: 54 TVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAALRALQNPRRSSGQSILRRI 106
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN--------APLLSMMTSED- 338
+ + ++ + V+F WIP+H GI GN D+LA + ++++ T +
Sbjct: 107 IDALERVRSQGLQVEFYWIPAHQGIEGNELADKLAMEATGCRQQRGRRGRMITVDTDDTA 166
Query: 339 ------------LKSAIKKKLLSEWHLHWKNNVINN---KLRRIKEDTLL-WKSSFDKDR 382
KS I ++ +W W+N L T+L S K
Sbjct: 167 ATPDFLRHLISAAKSEIHRQTQVQWERDWENESSGRATYALTPAPSPTVLHLHHSLHKAL 226
Query: 383 RKEIVICRLRIGHSHLTHNFLLKREDPP----LCEWCNVQLSIQHILLECRKF 431
IV ++R G L FL +R+ P LCE +++H+LL C +F
Sbjct: 227 SSTIV--QMRTGKIGL-RQFLYERKVPEITDTLCECGGGNQTVRHVLLACPRF 276
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIM--SPNHLVNNI 603
+V+++ELL I M L+ I ++ R IF TD++++L AL+N S ++ I
Sbjct: 54 TVYAAELLGILMGLNLILTSDRRRAAIF-------TDNQAALRALQNPRRSSGQSILRRI 106
Query: 604 LVKINELKILNITVKFLWIPSHLGIAGN 631
+ + ++ + V+F WIP+H GI GN
Sbjct: 107 IDALERVRSQGLQVEFYWIPAHQGIEGN 134
>gi|242807803|ref|XP_002485032.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715657|gb|EED15079.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 550
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 98/454 (21%), Positives = 180/454 (39%), Gaps = 65/454 (14%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+ R+ A + + +GA + + + + + R I+G + +PI +L E
Sbjct: 12 MRRIQKATAQAQLLWGAEFWWQGQKIWAQRFQVLINKQARAITGMFPKTPIGALIREAAL 71
Query: 85 PPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRN-------INRAN- 127
P +A Y R+ P ++P + IL HAQ G +R N
Sbjct: 72 EPATALLDARVAQYTARLLTLPDTHPTAQILPVTLRHGDLHAQPGEQPLDDREWASRDNK 131
Query: 128 LPRTVKSRLED--LQIFDRISAQVIKRDEYIAPWEL-SVPEIIYLTSEKKENLSSVAVKN 184
+P + RL Q R + I+R + EL P I + + +E L+ +
Sbjct: 132 VPNRLSQRLAKHLAQRLSRDPSGGIERTKQC---ELKGFPGSIRVI-DNEEALTEANQQR 187
Query: 185 AFFQFKGENQNSLFCYTDGSK---TAANSGCAYIT----ETESQVFKLYNENSVFSSELL 237
A F ++DGS+ A +G A E + + + VF +EL+
Sbjct: 188 AGTTF----------WSDGSRLDTGRAGAGVALQAVPGGPWEHVEVPMGHGHEVFDAELM 237
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELK 295
+ L E +++ D+++++ LK+ P LV + +L
Sbjct: 238 GVATALEWAL------ERQPLGPIWVLLDAQNAIDRLKSARPGPGQALVLRAHRAVEKLA 291
Query: 296 ILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLS 349
+ V W+P H G+ GN Q D+ AK + Q AP ++ ++ A ++ +S
Sbjct: 292 MRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGFEHLSLAYVRRACTEARRAAVS 351
Query: 350 EWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL-THNFL 403
EW + N + + R R+ + W + + + R L+ GH+ + T+
Sbjct: 352 EWA---RINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLHR 408
Query: 404 LKREDPPLCEWC-NVQLSIQHILLECRKFRASRN 436
+ R + P C+ C +++H+L ECR R R
Sbjct: 409 IGRRESPECQACKEPHETVRHVLFECRGRRTGRR 442
>gi|358376084|dbj|GAA92654.1| transposon I factor [Aspergillus kawachii IFO 4308]
Length = 231
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 15/171 (8%)
Query: 269 SSLLALK--NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS- 325
S+LLA++ S ++ IL + +T++ W+P H I GN D LAK +
Sbjct: 2 SALLAIQKPGSKSGQQIIYAILQAAKNTRTHGVTIRLQWVPGHSEILGNDTADRLAKEAA 61
Query: 326 ---QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSS----F 378
+ P +++ E ++ I++ +L++W WK + + LR+I ++TL K +
Sbjct: 62 IFGKTHPFSPLLSRE--RAYIRQGILTQWEQEWKESRDSGHLRKI-DNTLPAKYTRRLYG 118
Query: 379 DKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILLEC 428
R + ++ ++R GH L T+ L D C C + SI H+LL+C
Sbjct: 119 ALPRNRAYLLTQIRSGHFWLSTYGKLFGFRDDDQC-LCGERESIIHVLLDC 168
>gi|322703804|gb|EFY95407.1| putative reverse transcriptase [Metarhizium anisopliae ARSEF 23]
Length = 1861
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/372 (23%), Positives = 149/372 (40%), Gaps = 56/372 (15%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSS----------------LS 53
L+ L N G S + + R A V PI+ +GA + T S +
Sbjct: 1471 LRGLGNTRRGPSPSAMQRAVRACVEPILLFGAEAWYPGTTSPRLRQPKTVGPSKIQQLVK 1530
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPP----LETRRKILLANYGTRVKCNPSNP 109
+++ A+R I +RT+PI +L+ E+G PP LETRR + R+K
Sbjct: 1531 RMSKALKQAIRAILPTWRTTPITALHRESGIPPVLQLLETRR----LRFSARIK------ 1580
Query: 110 VSLILTHAQLGRNINRANLP--RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEII 167
SL L H + R + P + +K + + LQ + ++ + +E +A P +I
Sbjct: 1581 -SLDLAHLLVKRTVEETPRPVIKAIKLKFQ-LQPKN-FPTRLRRTNELLA--NSQRPTLI 1635
Query: 168 YLT--SEKKENLSSVAVKNAFFQFKGENQN----SLFCYTDGS---KTAANSGCAYITET 218
T E + L + + + + F Q +L Y+DGS AA G A
Sbjct: 1636 PRTYSDEPLQPLQTASKEESAEDFVQWLQTIPPFTLIVYSDGSLSPNGAAGYGYAVHQSG 1695
Query: 219 ES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
S Q VF +E L P+ + + +F+C D+ ++ L+
Sbjct: 1696 RSICQGAGRLGPAEVFDAEAKGALEGLKAALRL---PQSVTQ-KIFVCLDNIAAARCLRG 1751
Query: 277 IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN--SQNAPLLSMM 334
P+ + + L + + WIP H I GN Q D LAK +Q P ++
Sbjct: 1752 --KPSESSQRVFLTFQALAKTHRMTEVRWIPGHTKIPGNEQADVLAKAGCAQPEPADAVP 1809
Query: 335 TSEDLKSAIKKK 346
T L+ +++
Sbjct: 1810 TLAFLRRTARQR 1821
>gi|442748193|gb|JAA66256.1| Hypothetical protein [Ixodes ricinus]
Length = 99
Score = 61.6 bits (148), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 380 KDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN--- 436
++R E+++CRLRIGH+ LTH +LL +D P CE C L++ HIL CR +
Sbjct: 7 RNRFHEVLMCRLRIGHTRLTHLYLLCNDDTPHCEHCGKTLTVLHILWHCRYLDSKTTSMF 66
Query: 437 ----KWHLKDDISALLGDD 451
+ HL LLGD+
Sbjct: 67 STIFRCHLPFHHKFLLGDE 85
>gi|425783431|gb|EKV21281.1| hypothetical protein PDIP_08070 [Penicillium digitatum Pd1]
Length = 268
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 114/251 (45%), Gaps = 32/251 (12%)
Query: 141 IFDRISAQVIKRDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFC 199
I D + + R YI APW S P +++ E++E KN + + + +
Sbjct: 15 IPDALPREWESRKAYIQAPW--SKPPKVHI--EEREQ-----AKNTHDSIERQFRAPVRL 65
Query: 200 YTDGSKTAANSGCA-YIT----ETESQVFKLYNEN--SVFSSELLAIFMLLSHI-----C 247
YTDGS G A Y T + ES++ + +++ +V+++EL AI M L I
Sbjct: 66 YTDGSGYQGGIGAAVYPTYPSVQNESRLCNMGSDDDATVYAAELRAIEMALEVIQYQFTS 125
Query: 248 NTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLV--NNILVKINELKILNITVKFLW 305
N R R +V I TD++++L A++N P+ V L ++ I V+ W
Sbjct: 126 NDDWRERLAERGAV-IFTDNQAALKAIQNPKMPSGQVYLEGSLRLLDWCSKSKIQVELRW 184
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSA------IKKKLLSEWHLHW-KNN 358
IP+H GI GN VD LAK++ S + + A IK + + W W K
Sbjct: 185 IPAHEGIPGNEHVDMLAKSAATTTDTSNYHNRSTRLAAAASKWIKHESMIAWEKSWSKGG 244
Query: 359 VINNKLRRIKE 369
I + RR+ E
Sbjct: 245 RIARRTRRLVE 255
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 23/184 (12%)
Query: 468 RDEYI-APWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
R YI APW S P +++ E++E KN + + + + YTDGS
Sbjct: 26 RKAYIQAPW--SKPPKVHI--EEREQ-----AKNTHDSIERQFRAPVRLYTDGSGYQGGI 76
Query: 527 GCA-YIT----ETESQVFKLYNEN--SVFSSELLAIFMLLSHI-YSTSSRTEYIFR---D 575
G A Y T + ES++ + +++ +V+++EL AI M L I Y +S ++ R
Sbjct: 77 GAAVYPTYPSVQNESRLCNMGSDDDATVYAAELRAIEMALEVIQYQFTSNDDWRERLAER 136
Query: 576 SIFICTDSKSSLLALKNIMSPNHLV--NNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
I TD++++L A++N P+ V L ++ I V+ WIP+H GI GN
Sbjct: 137 GAVIFTDNQAALKAIQNPKMPSGQVYLEGSLRLLDWCSKSKIQVELRWIPAHEGIPGNEH 196
Query: 634 VPFL 637
V L
Sbjct: 197 VDML 200
>gi|353246588|emb|CCA76851.1| hypothetical protein PIIN_10836 [Piriformospora indica DSM 11827]
Length = 431
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 93/387 (24%), Positives = 153/387 (39%), Gaps = 82/387 (21%)
Query: 107 SNPVSLILTHAQLGRNINRANLP-----RTVKSRLEDLQIFDRISAQVIKRDEYIAPWEL 161
++P+S + A G + R N P ++ S+++DL+ S + P+ +
Sbjct: 25 THPLSKFVKRASRGL-LQRHNAPLHCIFHSIDSKVDDLKAITPAS----RNPNATNPFTI 79
Query: 162 SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----T 216
S+ E L E N + N + YTDGS G +
Sbjct: 80 SIEESKMLAKEADNNSNG-------------NSEQVVVYTDGSGMEGMIGAGAVLYRDGV 126
Query: 217 ETESQVFKLYN--ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL 274
S F L E++V EL+ I + + ++ E I + I D+++++ +
Sbjct: 127 RIRSARFLLGEDMEHTVHEGELVGIALGVQ-----LAKMERIVIPHIKISLDNQAAIQGM 181
Query: 275 KNI--MSPNHLVNNILVKI------------------NELKILNIT-VKFLWIPSHLGIA 313
+N+ + H++ I I NE +I T + W+P H GI
Sbjct: 182 ENVSAKAGQHIIRKIHRAIDKLRNDQKHRRELVEASDNETRINRSTQITLTWVPGHEGIE 241
Query: 314 GNVQVDELAK------NSQNAPLLSMMTSEDLK--SAIKKKL----LSEWHLHWKNNVIN 361
GN DE AK +S A L M L+ SA++++L H WK++
Sbjct: 242 GNKAADEEAKKAITDGSSTAATLPPWMKDTLLQNISALRQELKLAARKSAHNKWKSSARY 301
Query: 362 NKLRRIKEDTLLWKSSFDKD---RRKEIVICRLRIGH----SHLTHNFLLKREDPPLCEW 414
++ R I E K D R + + + +LR GH HL H + R D P C
Sbjct: 302 DRTRPIDETMPSNKYLQITDELMRAEAVALIQLRTGHIGLNKHLNH---INRADAPWCPH 358
Query: 415 C---NVQLSIQHILLECRKFRASRNKW 438
C N + +I H+L C + A+R KW
Sbjct: 359 CGEGNAE-NITHLLHICPAYNAARAKW 384
>gi|242825388|ref|XP_002488430.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712248|gb|EED11674.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1977
Score = 61.2 bits (147), Expect = 2e-06, Method: Composition-based stats.
Identities = 104/458 (22%), Positives = 188/458 (41%), Gaps = 63/458 (13%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 1463 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 1522
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGR----NINR 125
E P +A Y R+ P ++P + IL HAQ G +
Sbjct: 1523 IREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGEQPLDDREW 1582
Query: 126 ANLPRTVKSRLEDLQIFDRISAQVIKRD-----EYIAPWEL-SVPEIIYLTSEKKENLSS 179
A+ V +RL Q + AQ + RD E +EL S P I + +K+E L+
Sbjct: 1583 ASRDNKVLNRLG--QRLAKHLAQRLNRDPSGGIERTEQYELKSFPGSIRVL-DKEEALTE 1639
Query: 180 VAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET-------ESQVFKLYNENSVF 232
+ A F ++DGS+ A +T E + + + VF
Sbjct: 1640 ANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVF 1689
Query: 233 SSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVK 290
+EL+ + L + +++ D+++++ L++ P LV
Sbjct: 1690 DAELVGVATALEWALERQPL------GPIWVLLDAQNAIDRLRSTRPGPGQALVLRAHKA 1743
Query: 291 INELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAI---K 344
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A +
Sbjct: 1744 AEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEDLSLAHVRRACTEAR 1803
Query: 345 KKLLSEWHLHWKNNVINNKLR--RIKEDTLLWK---SSFDKDRRKEIVICRLRIGHSHL- 398
+ +SEW + N + + R R+ + W + +R +L+ GH+ +
Sbjct: 1804 RAAVSEWA---RINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIG 1860
Query: 399 THNFLLKREDPPLCEWCN-VQLSIQHILLECRKFRASR 435
T+ + R + P C+ C +++H+L ECR R R
Sbjct: 1861 TYLHRIGRRESPECQACKEPHETVRHVLFECRGRRTGR 1898
>gi|242814632|ref|XP_002486407.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218714746|gb|EED14169.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 454
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 110/258 (42%), Gaps = 31/258 (12%)
Query: 200 YTDGSKTAANSGCAYIT-------ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSR 252
++DGS+ A +T E + + + VF +EL+ + L
Sbjct: 127 WSDGSRLDTGRAGAGVTLQAVPEGPWEHVEVPMGHGHEVFDAELVGVATALEWAL----- 181
Query: 253 PEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHL 310
E F +++ D+++++ L++ P LV +L + V W+P H
Sbjct: 182 -ERQFLGPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHRAAEKLALRGQPVTIQWVPGHS 240
Query: 311 GIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKL 364
GI GN Q D+ AK + Q AP ++ ++ A ++ +SEW + N + +
Sbjct: 241 GIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEARRAAVSEWA---QINAVQGRH 297
Query: 365 R-----RIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWC-NV 417
R ++ L + +R +L+ GH+ + T+ + + + + P C+ C
Sbjct: 298 RDGCVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGHAPIGTYLYRIGQRESPECQACKEP 357
Query: 418 QLSIQHILLECRKFRASR 435
+++H+L ECR RA R
Sbjct: 358 HETVRHVLFECRGRRAGR 375
>gi|156540059|ref|XP_001599613.1| PREDICTED: hypothetical protein LOC100114674, partial [Nasonia
vitripennis]
Length = 721
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 202 DGSKTAANSGCAYITETES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259
DGS+ +G Y ++ + F L +VF +E+ AI C R+ E RD
Sbjct: 194 DGSRAETGTGSGYYSQRDGWGTFFSLGRYATVFQTEINAIL-----TCAQRN-IELGARD 247
Query: 260 SVF-ICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
+ IC+DS+++L AL + + LV V +N+L N V+ L +P H GI GN
Sbjct: 248 RIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLCVPGHTGIRGNEIA 307
Query: 319 DELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWH 352
D LA P + E A + K EW
Sbjct: 308 DRLAALGAKHPSIG---PEPYTGAARCKHTKEWQ 338
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 518 DGSKTAANSGCAYITETES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
DGS+ +G Y ++ + F L +VF +E+ AI + E RD
Sbjct: 194 DGSRAETGTGSGYYSQRDGWGTFFSLGRYATVFQTEINAI------LTCAQRNIELGARD 247
Query: 576 SIF-ICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 634
I IC+DS+++L AL + + LV V +N+L N V+ L +P H GI GN
Sbjct: 248 RIITICSDSQAALRALMAHRTTSRLVWECKVVVNQLTAHNNKVRLLCVPGHTGIRGNEIA 307
Query: 635 PFLEILKSSYKYIQSD 650
L L + + I +
Sbjct: 308 DRLAALGAKHPSIGPE 323
>gi|443692369|gb|ELT93971.1| hypothetical protein CAPTEDRAFT_226222 [Capitella teleta]
Length = 483
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 350 EWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP 409
+W W + NKL I+ W S + RR+EIV+ R RIGHSHLTH +LL+RE P
Sbjct: 140 KWQEQWSSEQ-ENKLYCIQPTLGKWAKSSWEIRREEIVLARARIGHSHLTHGYLLRREMP 198
Query: 410 PLCEWCNV 417
P+C C
Sbjct: 199 PVCIPCQT 206
>gi|242768198|ref|XP_002341520.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218724716|gb|EED24133.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 200
Score = 60.8 bits (146), Expect = 2e-06, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 33/201 (16%)
Query: 254 EYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
+ I R+++ C DS++++ A+ + ++ +I K +EL+ + V WIP+H GI
Sbjct: 8 QRIVREAIIFC-DSQAAIQAIDGTQKTGQQILGSIAEKWDELRNQGVQVSIHWIPTHQGI 66
Query: 313 AGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLS----EWHLHWKNNVINNKLRRIK 368
GN + D AK + L+ + + SA+K+ L + +W W+ N L RI
Sbjct: 67 EGNERADRAAKEATGWRLIRNIGLQQPLSALKRDLKTLAYKQWEQEWQRNQQGRTLFRI- 125
Query: 369 EDTLLWKSSFDKDRRKEI------------VICRLRIGHSHLTHNFLLKREDPPL----C 412
DK +K I ++ ++ G+ L H FL +R+ P + C
Sbjct: 126 ---------VDKPSKKNIELHARLSRPLSSILTQMWTGNIGLRH-FLYQRKIPGIDDGEC 175
Query: 413 EWCNVQLSIQHILLECRKFRA 433
+ ++ HILL C K +
Sbjct: 176 QCRRGAQTVTHILLSCPKVQG 196
>gi|425781333|gb|EKV19307.1| hypothetical protein PDIG_03370 [Penicillium digitatum PHI26]
Length = 648
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 110/244 (45%), Gaps = 30/244 (12%)
Query: 227 NENSVFSSELLAIFMLLSHI-----CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN 281
++ +V+++EL AI M L I N R R +V I TD++++L A+KN P+
Sbjct: 311 DDATVYAAELHAIEMALEVIQYQFTSNDDWRERLAERGAV-IFTDNQAALKAIKNPKMPS 369
Query: 282 HLV--NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDL 339
V L ++ I V+ WIP+H GI GN VD LAK++ S +
Sbjct: 370 GQVYLEGSLRLLDWCSKSKIQVELRWIPAHEGIPGNEHVDMLAKSAATTTDTSNYHNRST 429
Query: 340 KSA------IKKKLLSEWHLHW-KNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--VICR 390
+ A IK + + W W K I + RR+ E ++ K RK V+ +
Sbjct: 430 RLAAAASKWIKHESMIAWEKSWSKGGRIARRTRRLVEAPNKTNLAYWKGLRKATTSVLIQ 489
Query: 391 LRIGHSHLTHNF-LLKREDPPLCEWCNVQLSIQHILLEC---RKFRASRNKWHLKDDISA 446
LR G L +KR+D S++H+LLEC ++ R+ + + +S
Sbjct: 490 LRTGIIGLAEYLSKIKRKD---------SXSVKHVLLECPLLKELRSEMVEELFMEGVST 540
Query: 447 LLGD 450
LG+
Sbjct: 541 TLGE 544
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 543 NENSVFSSELLAIFMLLSHI-YSTSSRTEYIFR---DSIFICTDSKSSLLALKNIMSPNH 598
++ +V+++EL AI M L I Y +S ++ R I TD++++L A+KN P+
Sbjct: 311 DDATVYAAELHAIEMALEVIQYQFTSNDDWRERLAERGAVIFTDNQAALKAIKNPKMPSG 370
Query: 599 LV--NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL 637
V L ++ I V+ WIP+H GI GN V L
Sbjct: 371 QVYLEGSLRLLDWCSKSKIQVELRWIPAHEGIPGNEHVDML 411
>gi|242786282|ref|XP_002480775.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720922|gb|EED20341.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 882
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 166/414 (40%), Gaps = 65/414 (15%)
Query: 64 RIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT------- 115
R I+G + +PI +L E P +A Y R+ P ++P + IL
Sbjct: 413 RAITGMFPKTPIGALIREAALEPATALLDARVAQYTARLLTLPDTHPTAQILPVTLRHGD 472
Query: 116 -HAQLGRN-------INRAN-LPRTVKSRLED--LQIFDRISAQVIKRDEYIAPWEL-SV 163
HAQ G +R N +P + RL Q R + I+R + EL
Sbjct: 473 LHAQPGEQPLDDREWASRDNKMPNRLGQRLAKHLAQRLSRDPSGGIERTKQC---ELKGF 529
Query: 164 PEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSK---TAANSGCAYITET-- 218
P I + + +E L+ + A F ++DGS+ A +G A
Sbjct: 530 PGSIRVL-DNEEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVALQAVPGG 578
Query: 219 --ESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
E + + + VF +EL+ + L E +++ D+++++ LK+
Sbjct: 579 PWEHVEVPMGHGHEVFDAELMGVATALEWAL------ERQPLGPIWVLLDAQNAIDRLKS 632
Query: 277 IM-SPNH-LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLL 331
+P LV + +L + V W+P H G+ GN Q D+ AK + Q AP
Sbjct: 633 TRPAPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQTAPGF 692
Query: 332 SMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEI 386
++ +K A ++ +SEW + N + + R R+ + W + +
Sbjct: 693 EHLSLAYVKRACMEARRAAVSEWA---RINAVQGRHRDGRVYKMPRGWNLGPVAGKAPKR 749
Query: 387 VICR---LRIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
+ R L+ GH+ + T+ + R + P C+ C +++H+ ECR R R
Sbjct: 750 LASRYYQLKTGHAPIGTYLHRIGRRESPECQACKEPHETVRHVFFECRGRRTGR 803
>gi|242797316|ref|XP_002482987.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719575|gb|EED18995.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1249
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 107/485 (22%), Positives = 188/485 (38%), Gaps = 81/485 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY--------GAVIYGSATQSSLS 53
K+ K + L + TWG L +++ A ++P + Y G + A +++
Sbjct: 730 KAAKLVAGLSSIAGSTWGTPLVHLRKIYTAVLQPQIMYACSTWYIRGGRGFTGAQRAAEQ 789
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ ++ AL ISGA++ + ++L PP E L R+ +P L
Sbjct: 790 AIRSIQDQALHQISGAFKRTSRQALEVCLHVPPAELTLAKLAEEACLRIMTSP-----LR 844
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAP------WELSVPEII 167
T Q+ R N P T + I ++ + +R E I P WE I
Sbjct: 845 STLYQI-RGQAHCNDPYTSPLHRLETAIDRKLGSDTSQRIETIYPFVVPPWWEPPEARID 903
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY- 226
E + + +++ + QF +TDGS G A + + Q +K
Sbjct: 904 DTREEAIKAIEAISGTDTTIQF----------FTDGSGFDNGIGAA-VYSSIGQAYKPVG 952
Query: 227 --NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLV 284
+ ++V++ EL I L + RS+P I TD+++ A++ P
Sbjct: 953 SSDTHTVYAGELEGIDAALEILL--RSQPCDDNPHEATIYTDNQA---AIRATCQPGRSS 1007
Query: 285 NNILVK--INELKILNIT-----VKFLWIPSHLGIAGNVQVDELAK-------------- 323
+++ + L +L V+ W+P H G+ GN + D+LAK
Sbjct: 1008 GQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAAVEATRRTQENA 1067
Query: 324 -------NSQNAPLLSMMT-----SEDLKSAIKKKLLS----EWHLHWKNNVINNKLRR- 366
+Q P + M+ S L + +++L + W W++ L R
Sbjct: 1068 HIARISAPNQTTPHAARMSYIPNQSTILMAVCRQRLHAGFAKRWKEQWEHANHGRHLYRI 1127
Query: 367 IKEDTLLWKSSFDKDRRK-EIVICRLRIGHSHLTHNFL--LKREDPPLCEWCNVQLSIQH 423
IK T + + RR V+ +L+ G S L +FL ++ ED P CE H
Sbjct: 1128 IKAPTKMVLQLHEGLRRAWSSVLIQLQTGKSAL-RSFLASVRIEDSPQCECGLGDQDTAH 1186
Query: 424 ILLEC 428
+L+ C
Sbjct: 1187 VLIRC 1191
>gi|242794549|ref|XP_002482398.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718986|gb|EED18406.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 2069
Score = 60.5 bits (145), Expect = 3e-06, Method: Composition-based stats.
Identities = 104/461 (22%), Positives = 189/461 (40%), Gaps = 69/461 (14%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 1555 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 1614
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT--------HAQLGRNINRANLP 129
E P +A Y R+ P ++P + IL HAQ G +
Sbjct: 1615 IREAALEPATVLMDARVARYTARLLALPDTHPTAQILPVTLRHGDLHAQPGE---QPRDD 1671
Query: 130 RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWELS-VPEIIYLTSEKKEN 176
R SR D ++ +R+ AQ + RD E EL P I + +K+E
Sbjct: 1672 REWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTEQCELQGFPGSIRVL-DKEEA 1728
Query: 177 LSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET-------ESQVFKLYNEN 229
L+ + A F ++DGS+ A +T E + + +
Sbjct: 1729 LTEANQQRAGTTF----------WSDGSRLDTGRVGAGVTLQAVPGGPWEHVEVPMGHGH 1778
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNI 287
VF +EL+ + L + +++ D+++++ L++ P LV
Sbjct: 1779 EVFDAELVGVATALEWALERQPL------GPIWVLLDAQNAIDRLRSTRPGPGQALVLRA 1832
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAI- 343
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A
Sbjct: 1833 HRAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACT 1892
Query: 344 --KKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHS 396
++ +SEW + N + + R R+ + W + + V R L+ GH+
Sbjct: 1893 EARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGHA 1949
Query: 397 HL-THNFLLKREDPPLCEWCN-VQLSIQHILLECRKFRASR 435
+ T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 1950 PIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 1990
>gi|407915859|gb|EKG09366.1| Reverse transcriptase, partial [Macrophomina phaseolina MS6]
Length = 1113
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 147/346 (42%), Gaps = 41/346 (11%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLS-------K 54
++ A+ L + TWG+ L +++ + + P + Y I+ S S
Sbjct: 757 RATTALTALSSIAGSTWGIPTLGLRQIYRSIILPRILYCCSIWALGKPRSKSMEARLADT 816
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQ-PPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ + + A RII+GA+R + +L E P +T RK + + L
Sbjct: 817 VEAIQYRAARIIAGAFRATSKAALDVELFLLPAAQTVRKYMGEAF-------------LR 863
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFD----RISAQVIKR-DEYIAPWELSVPEIIY 168
+ QL R + + RT SR D RI +R D +A E +P +
Sbjct: 864 IASTQLYRQLIQLT-ERTWDSRKRDCPDMRSPMLRIREYWNERLDGLLANTEQRLPHLFP 922
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQN--SLFCYTDGSKTAANSGCAYITET----ESQV 222
+ + + + + A Q ++ +L YTDGS + G A T ++
Sbjct: 923 QWQKPADVCIAKSRELAICQHDRTRKDMETLAIYTDGSAIDGHVGAAATAHTAKTRRTKY 982
Query: 223 FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF-RDSVFICTDSKSSLLAL--KNIMS 279
+VF++EL + M L + E + + + + TD++++L AL S
Sbjct: 983 MGTIKATTVFAAELQGLVMALE-----LAEAEMVHGKRKIAVFTDNQAALRALVTPGEQS 1037
Query: 280 PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
+L+++I+ K+ L+ +V F WIP+H G+ GN + D+LAK +
Sbjct: 1038 GQYLLSSIIAKLTGLQQKGASVGFHWIPAHQGVPGNEEADKLAKAA 1083
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 12/131 (9%)
Query: 508 ENQNSLFCYTDGSKTAANSGCAYITET----ESQVFKLYNENSVFSSELLAIFMLLSHIY 563
++ +L YTDGS + G A T ++ +VF++EL + M L
Sbjct: 948 KDMETLAIYTDGSAIDGHVGAAATAHTAKTRRTKYMGTIKATTVFAAELQGLVMALE--- 1004
Query: 564 STSSRTEYIF-RDSIFICTDSKSSLLAL--KNIMSPNHLVNNILVKINELKILNITVKFL 620
+ E + + I + TD++++L AL S +L+++I+ K+ L+ +V F
Sbjct: 1005 --LAEAEMVHGKRKIAVFTDNQAALRALVTPGEQSGQYLLSSIIAKLTGLQQKGASVGFH 1062
Query: 621 WIPSHLGIAGN 631
WIP+H G+ GN
Sbjct: 1063 WIPAHQGVPGN 1073
>gi|242775779|ref|XP_002478708.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218722327|gb|EED21745.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 294
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 24/223 (10%)
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNN 286
+ VF +EL+ + L E +++ D+++++ L++ P LV
Sbjct: 21 HEVFDAELVGVATALEWAL------ERQPLGPIWVLLDAQNAIDRLRSTRPGPGQALVLR 74
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA- 342
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A
Sbjct: 75 AHRAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRAC 134
Query: 343 --IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGH 395
++ +SEW + N + + R R+ + W + + V R L+ GH
Sbjct: 135 TEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGH 191
Query: 396 SHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASRN 436
+ + T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 192 APIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGRR 234
>gi|156052321|ref|XP_001592087.1| hypothetical protein SS1G_06326 [Sclerotinia sclerotiorum 1980]
gi|154704106|gb|EDO03845.1| hypothetical protein SS1G_06326 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 244
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 19/188 (10%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+L+ T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLVATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLF 198
FD ++ + I Y PW+ VP + ++ KE + + N F+++ +N++
Sbjct: 120 QKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKE--EAAMIHNLAFKYRC--KNTIT 174
Query: 199 CYTDGSKT 206
YTD S T
Sbjct: 175 IYTDASST 182
>gi|427779397|gb|JAA55150.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 425
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 67/294 (22%)
Query: 156 IAPWELSVPEI--IYLTSEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 212
+ PW L+ P I + KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGTRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 213 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270
A + ++ FK + + ++EL A+ + L I + R++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 271 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
AL++++SP LV I + + L + F W+ SH GI GN + D+ A++
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLTSHCGIIGNERADQAARS 296
Query: 325 SQNA------PLLSMMTSEDLKSAIKKKLLSEWH-LHWKNNVINNKLRRIKEDTLLWKSS 377
+ PL + L+ ++ +S+W+ H+KN R D L
Sbjct: 297 AHTESSQILIPLSRTDAAWKLRVLARQCTVSQWNEPHFKNP------RLYSLDPTL---- 346
Query: 378 FDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKF 431
D C+ C+ +IQHIL EC ++
Sbjct: 347 -----------------------------ADTAACDHCSGDETIQHILCECPQY 371
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 472 IAPWELSVPEI--IYLTSEKKENLSSVAVKNAFFQFKGEN-QNSLFCYTDGSKTAANSGC 528
+ PW L+ P I + KK ++SS A+K E Q S+ YTDGS +S
Sbjct: 127 VPPWCLTQPSINLTIPGTRKKADMSSPALKQLALLLLYEKYQGSMHVYTDGSVMPNSSTA 186
Query: 529 AYITETESQV--FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586
A + ++ FK + + ++EL A+ + L I ++ IF +DSK+
Sbjct: 187 AVVIPMKATTIKFKTSHLTTSTAAELAALRVALDFITDERAQKWAIF-------SDSKA- 238
Query: 587 LLALKNIMSP------NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
AL++++SP LV I + + L + F W+ SH GI GN
Sbjct: 239 --ALQSLLSPLRRGLHEQLVFEITEETHRLIEKGHQITFQWLTSHCGIIGN 287
>gi|242827232|ref|XP_002488790.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712046|gb|EED11474.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1907
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 110/488 (22%), Positives = 189/488 (38%), Gaps = 87/488 (17%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY--------GAVIYGSATQSSLS 53
K+ K + L + TWG L +++ A ++P + Y G + A +++
Sbjct: 1388 KAAKLVAGLSSIAGSTWGTPLVHLRKIYTAVLQPQIMYACSTWYIRGGRGFTGAQRAAEQ 1447
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ ++ AL ISGA++ + ++L PP E L R+ +P L
Sbjct: 1448 AIRSIQDQALHQISGAFKRTSRQALEVCLHVPPAELTLAKLAEEACLRIMTSP-----LR 1502
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAP------WELSVPEII 167
T Q+ R N P T + I ++ + +R E I P WE I
Sbjct: 1503 STLYQI-RGQAHCNDPYTSPLHRLETAIDRKLGSDTSQRIETIYPFVVPPWWEPPEARID 1561
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY- 226
E + + +++ + QF +TDGS G A + + Q +K
Sbjct: 1562 DTREEAIKAIEAISGTDTTIQF----------FTDGSGFDNGIGAA-VYSSIGQAYKPVG 1610
Query: 227 --NENSVFSSELLAI-----FMLLSHICNTRSRPEYIFRDSVF----ICTDSKSS-LLAL 274
+ ++V++ EL I +L S C+ I+ D+ C +SS L
Sbjct: 1611 SSDTHTVYAGELEGIDAALEILLRSQPCDDNPHEATIYTDNQAAIRATCQPGRSSGQYIL 1670
Query: 275 KNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK----------- 323
+ I+ HL L++ N + V+ W+P H G+ GN + D+LAK
Sbjct: 1671 RRIV--RHLG---LLRDNRSRW---RVRLQWVPGHEGVPGNEKADQLAKLAAVEATRRTQ 1722
Query: 324 ----------NSQNAPLLSMMT-----SEDLKSAIKKKLLS----EWHLHWKNNVINNKL 364
+Q P + M+ S L + +++L + W W++ L
Sbjct: 1723 ENARIARISAPNQTTPHAARMSYIPNQSTILMAVCRQRLHAGFAKRWKEQWEHANHGRHL 1782
Query: 365 RR-IKEDTLLWKSSFDKDRRK-EIVICRLRIGHSHLTHNFL--LKREDPPLCEWCNVQLS 420
R IK T + + RR V+ +L+ G S L +FL ++ ED P CE
Sbjct: 1783 YRIIKAPTKMVLQLHEGLRRAWSSVLIQLQTGKSAL-RSFLASVRIEDSPQCECGLGDQD 1841
Query: 421 IQHILLEC 428
H+L+ C
Sbjct: 1842 TAHVLIRC 1849
>gi|427791585|gb|JAA61244.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1099
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 117/293 (39%), Gaps = 40/293 (13%)
Query: 158 PW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 210
PW +LS+P + K+ S+ A + + N L YTDGS + N+
Sbjct: 789 PWTLEDVICDLSIPGL----QSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNN 844
Query: 211 GCA--YITETESQVFKLYNENSVFSS--ELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
CA Y + + ++ V S+ E AI L + N F I +D
Sbjct: 845 SCAAAYWIPSIGAAWSGRLDHLVSSTVAESAAIAAALRKLKNG-------FAQRAVIISD 897
Query: 267 SKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS- 325
KS++ L N+ L + + + F WIPSH+G++GN + D LA +
Sbjct: 898 CKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEAL 957
Query: 326 QNAPLLSMMTSEDL-KSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK 384
P + T++ L K I+ S W+ + V R E TLL++
Sbjct: 958 SRQPTIRAPTNQQLPKQTIQSHFRSLWNSPHQPCVTRGLSR--AESTLLYR--------- 1006
Query: 385 EIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
R R ++ F +K PLC CN I+H + C++F + R +
Sbjct: 1007 ----IRTRSAYTP-AWLFKVKGAPSPLCTECNETADIEHYISSCKRFCSERER 1054
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 474 PW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
PW +LS+P + K+ S+ A + + N L YTDGS + N+
Sbjct: 789 PWTLEDVICDLSIPGL----QSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNN 844
Query: 527 GCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTS-----------SRTEYIFRD 575
CA + + + + +S L H+ S++ + + F
Sbjct: 845 SCA-------AAYWIPSIGAAWSGRL-------DHLVSSTVAESAAIAAALRKLKNGFAQ 890
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
I +D KS++ L N+ L + + + F WIPSH+G++GN
Sbjct: 891 RAVIISDCKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGN 946
>gi|321462343|gb|EFX73367.1| hypothetical protein DAPPUDRAFT_253251 [Daphnia pulex]
Length = 159
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 13/145 (8%)
Query: 189 FKGENQNSLFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVFSSELLAIFMLLSHI 246
++ + N++ +T AA CA+ + ++ +KL + +S+FS+EL AI L +I
Sbjct: 17 YESQPANTINVFTGRDNRAA---CAFTIPSRDVNKAWKLPDNSSIFSAELAAIRQALDYI 73
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNI-MSPNHLVNNILVKINELKILNITVKFLW 305
N IF DS+ +S++A+ N + +HL+ +I ++ L F+W
Sbjct: 74 YNFEIAVVNIFSDSL-------ASVMAIHNQRVDSHHLIKDIRQTVSNLLSSGTRTNFIW 126
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPL 330
IPSH+ I GN + DELA + P+
Sbjct: 127 IPSHVTIPGNERADELATQCLSDPV 151
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 68/130 (52%), Gaps = 13/130 (10%)
Query: 505 FKGENQNSLFCYTDGSKTAANSGCAYITETE--SQVFKLYNENSVFSSELLAIFMLLSHI 562
++ + N++ +T AA CA+ + ++ +KL + +S+FS+EL AI L +I
Sbjct: 17 YESQPANTINVFTGRDNRAA---CAFTIPSRDVNKAWKLPDNSSIFSAELAAIRQALDYI 73
Query: 563 YSTSSRTEYIFRDSIFICTDSKSSLLALKNI-MSPNHLVNNILVKINELKILNITVKFLW 621
Y+ IF DS+ +S++A+ N + +HL+ +I ++ L F+W
Sbjct: 74 YNFEIAVVNIFSDSL-------ASVMAIHNQRVDSHHLIKDIRQTVSNLLSSGTRTNFIW 126
Query: 622 IPSHLGIAGN 631
IPSH+ I GN
Sbjct: 127 IPSHVTIPGN 136
>gi|427780027|gb|JAA55465.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 859
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 117/293 (39%), Gaps = 40/293 (13%)
Query: 158 PW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 210
PW +LS+P + K+ S+ A + + N L YTDGS + N+
Sbjct: 546 PWTLEDVICDLSIPGL----QSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNN 601
Query: 211 GCA--YITETESQVFKLYNENSVFSS--ELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
CA Y + + ++ V S+ E AI L + N F I +D
Sbjct: 602 SCAAAYWIPSIGAAWSGRLDHLVSSTVAESAAIAAALRKLKNG-------FAQRAVIISD 654
Query: 267 SKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS- 325
KS++ L N+ L + + + F WIPSH+G++GN + D LA +
Sbjct: 655 CKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGNERADALANEAL 714
Query: 326 QNAPLLSMMTSEDL-KSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK 384
P + T++ L K I+ S W+ + V R E TLL++
Sbjct: 715 SRQPTIRAPTNQQLPKQTIQSHFRSLWNSPHQPCVTRGLSR--AESTLLYR--------- 763
Query: 385 EIVICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
R R ++ F +K PLC CN I+H + C++F + R +
Sbjct: 764 ----IRTRSAYTP-AWLFKVKGAPSPLCTECNETADIEHYISSCKRFCSERER 811
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 474 PW-------ELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS 526
PW +LS+P + K+ S+ A + + N L YTDGS + N+
Sbjct: 546 PWTLEDVICDLSIPGL----QSKRSTPSTEARCLVLEHLEMKYSNCLHVYTDGSVSIDNN 601
Query: 527 GCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTS-----------SRTEYIFRD 575
CA + + + + +S L H+ S++ + + F
Sbjct: 602 SCA-------AAYWIPSIGAAWSGRL-------DHLVSSTVAESAAIAAALRKLKNGFAQ 647
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
I +D KS++ L N+ L + + + F WIPSH+G++GN
Sbjct: 648 RAVIISDCKSAMQQLSRGTPTNNFCRQSLASLKDATKKGXNITFQWIPSHVGVSGN 703
>gi|443684282|gb|ELT88245.1| hypothetical protein CAPTEDRAFT_27962, partial [Capitella teleta]
Length = 130
Score = 59.7 bits (143), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K +A+N+L+ L + G+ R LL+LF + +R +DYG+V+YGSA S L +L V +
Sbjct: 62 KCQRALNLLRTLAHFNLGVDRKTLLKLFRSIIRSTIDYGSVVYGSARPSYLKRLGVVQNG 121
Query: 62 ALRIISGAY 70
ALR GA+
Sbjct: 122 ALRTCLGAF 130
>gi|443691113|gb|ELT93070.1| hypothetical protein CAPTEDRAFT_211145 [Capitella teleta]
Length = 242
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 374 WKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCN 416
W S + RR+EIV+ R RIGHSHLTH +LL+RE PP+C C
Sbjct: 25 WAKSSREIRREEIVLARARIGHSHLTHGYLLRREMPPVCIPCQ 67
>gi|242825777|ref|XP_002488508.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
gi|218712326|gb|EED11752.1| hypothetical protein TSTA_109310 [Talaromyces stipitatus ATCC
10500]
Length = 466
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 84/362 (23%), Positives = 145/362 (40%), Gaps = 60/362 (16%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSS--LSKLNTVYHTALRIISGAYRTSPIESLYAEN 82
+ +L+ A V I+DY + ++ + + L L TV T L I A++T+ +L E
Sbjct: 1 MRQLYQACVTLIVDYASTVWHNPLKDKIHLRMLGTVQRTTLICILSAFKTASTAALEVEA 60
Query: 83 GQPP----LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLED 138
P L+ R +I+ A T + +P G+ IN P +
Sbjct: 61 YVLPTNLRLKQRAQIVAARLSTLPEDHP-------------GQTINPTPPPPWQTPAFVE 107
Query: 139 LQIF-DRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSL 197
+ I DR A +D+ A ++ S + V FF G+ QN+L
Sbjct: 108 IDIEPDRDKA----KDKASA----------------RQKASGITV---FFNASGQ-QNAL 143
Query: 198 FCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
G+ A I + + SV+++EL+AI+ +S + + I
Sbjct: 144 -----GAAAVALDQNHNIIQHQKVCIGSIEYWSVYTAELMAIYYAISLVLKIAMENQVIL 198
Query: 258 ---RDSVFICTDSKSSLLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
++ I +DS S+L A+ N S ++ + ELK I + W+P H
Sbjct: 199 VGQQEPATILSDSMSALQAISNTRNKSGQRIIQAVQQAAQELKARGIPLCLQWMPGHCDN 258
Query: 313 AGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIK 368
GN + LAK + + P +++ E K I+ ++ +W W+ + LRRI
Sbjct: 259 PGNEAANRLAKEAVSLDKEHPFQHLLSRE--KGFIRNRIQEDWEQGWRTSKNGGHLRRID 316
Query: 369 ED 370
D
Sbjct: 317 RD 318
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIF---RDSIFICTDSKSSLLALKNIM--SPNHLV 600
SV+++EL+AI+ +S + + + I ++ I +DS S+L A+ N S ++
Sbjct: 171 SVYTAELMAIYYAISLVLKIAMENQVILVGQQEPATILSDSMSALQAISNTRNKSGQRII 230
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ ELK I + W+P H GN
Sbjct: 231 QAVQQAAQELKARGIPLCLQWMPGHCDNPGN 261
>gi|443708866|gb|ELU03797.1| hypothetical protein CAPTEDRAFT_187709 [Capitella teleta]
Length = 213
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGR-NINRANLPRTVKSRL-EDLQIFD 143
P+ R+K+L + RV + +NP + + R +++ N R + R+ EDLQ
Sbjct: 2 PMAIRQKLLSVQFALRVCSDTTNPAHQCIFNYNNDRFYLSKPNAIRPLALRIKEDLQTIC 61
Query: 144 RISAQVIKRDEYIAP-WELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCY 200
+ + P W L PE I + KK + +KN F+ + + +
Sbjct: 62 PDIKAITPNHLFNTPYWLLRPPELDISLIHFGKKTTNPNYTLKNEFYNLMDKYPDHKVIF 121
Query: 201 TDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFRD 259
TDGSK+ + C+ + +L + S+FS+ELLAI+ +L+ + C+ + +++
Sbjct: 122 TDGSKSDSAVACSATADNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQQFL--- 178
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKI 291
I TDS SSL A+ N + V IL ++
Sbjct: 179 ---IATDSLSSLQAIGNFNIKHPYVFKILTEV 207
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 475 WELSVPE--IIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT 532
W L PE I + KK + +KN F+ + + +TDGSK+ + C+
Sbjct: 78 WLLRPPELDISLIHFGKKTTNPNYTLKNEFYNLMDKYPDHKVIFTDGSKSDSAVACSATA 137
Query: 533 ETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+ +L + S+FS+ELLAI+ +L+ + +++ + I TDS SSL A+ N
Sbjct: 138 DNLRIQIRLPDSASIFSAELLAIYQVLTLLECSANDQQ-----QFLIATDSLSSLQAIGN 192
Query: 593 IMSPNHLVNNILVKI 607
+ V IL ++
Sbjct: 193 FNIKHPYVFKILTEV 207
>gi|242825403|ref|XP_002488433.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712251|gb|EED11677.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 458
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 25/223 (11%)
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH- 282
+ + + VF +EL+ + L E +++ D+++++ L++ P
Sbjct: 170 MGHGHEVFDAELVGVATALEWAL------ERQPLGPIWVLLDAQNAIDRLRSTRPGPGQA 223
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDL 339
LV +L + V W+P H GI GN Q D+ AK + Q AP ++ +
Sbjct: 224 LVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEYLSLAHV 283
Query: 340 KSA---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
+ A ++ +SEW + N + + R R D + K+S +R +L+ G
Sbjct: 284 RRAYTEARRAAVSEWA---RINAVQGRHRDGRWNLDPVAGKAS----KRLASRYYQLKTG 336
Query: 395 HSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
H+ + T+ + R + P C+ C +++H+L ECR R R
Sbjct: 337 HAPIGTYLHRIGRRESPECQACKEPHETVRHMLFECRGRRTGR 379
>gi|242770563|ref|XP_002342006.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218725202|gb|EED24619.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1159
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 79/346 (22%), Positives = 139/346 (40%), Gaps = 46/346 (13%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY--------GAVIYGSATQSSLS 53
K+ K + L + TWG L +++ A ++P + Y G + A +++
Sbjct: 744 KAAKLVVGLSSIAGSTWGTPLVHLRKIYTAVLQPQIMYACSTWYIQGGRGFTGAQRAAEQ 803
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ ++ AL ISGA++ + ++L PP E L R+ +P L
Sbjct: 804 AIRSIQDQALHQISGAFKHTSRQALEVCLHVPPAELTLAKLAEEACLRIMTSP-----LR 858
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAP------WELSVPEII 167
T Q+ R N P T + I ++ + +R E I P WE I
Sbjct: 859 STLYQI-RGQAHCNDPYTSPLHRLETAIDRKLGSDTSQRIETIYPFVVPPWWEPPEARIN 917
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY- 226
E + + +++ + QF +TDGS G A + + Q +KL
Sbjct: 918 NTRKEAIKAIEAISGTDTTIQF----------FTDGSGFDNGIGAA-VYSSIGQAYKLVG 966
Query: 227 --NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLV 284
N ++V++ EL I L + RS+P I TD+++ A++ P
Sbjct: 967 SSNTHTVYAGELEGIDAALEILL--RSQPCDDNPHEATIYTDNQA---AIRATCQPGRSS 1021
Query: 285 NNILVK--INELKILNIT-----VKFLWIPSHLGIAGNVQVDELAK 323
+++ + L +L V+ W+P H G+ GN + D+LAK
Sbjct: 1022 GQYILRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEKADQLAK 1067
>gi|358376801|dbj|GAA93312.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 316
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 233 SSELLAIFMLLSHICNTRSRPEYIF---RDSVFICTDSKSSLLALKNIM--SPNHLVNNI 287
+ EL+AIF +S + ++ + + I +DS S+L A++N S ++ I
Sbjct: 65 AGELMAIFYAISLVLQVTTKRQGRLDRGKQPATILSDSMSALQAIRNPANKSGQRIIRAI 124
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSEDLKSAI 343
L +E+ I ++ W+P H GN + D LAK + P +++ E+ I
Sbjct: 125 LQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKEAVGPRKMHPFKPLLSREN--GFI 182
Query: 344 KKKLLSEWHLHWKNNVINNKLRRI 367
+K++L+EW W + LR+I
Sbjct: 183 RKRVLNEWKEEWAKSTKGGHLRQI 206
>gi|358376652|dbj|GAA93188.1| reverse transcriptase, partial [Aspergillus kawachii IFO 4308]
Length = 1240
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 103/463 (22%), Positives = 179/463 (38%), Gaps = 67/463 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYG------SATQSSLSKL 55
K ++A+ LK L G+S RLF A V +DY A ++ S + L
Sbjct: 773 KGIRAVLALKRLR----GVSPNTARRLFTAMVTSTVDYAASVWCTPKGDVSVPNWVVKAL 828
Query: 56 NTVYHTALRIISGAYRTSPIESLYAENGQPPLETR-RKILLANYGTRVKCNPSNPVSLIL 114
+ A + I+GA+R+ + +E P+ETR RK +L ++ +KC+ +L
Sbjct: 829 KPIQRYATQAITGAFRSVSLTIAESEASIEPIETRLRKRILRHW---IKCH-----TLPT 880
Query: 115 THAQLGRNINRANLPRTVKS---RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS 171
TH + RT S +L DL R ++I+ ++PW ++ + I
Sbjct: 881 THPFWHCRRQAEFVARTYSSPFMKLRDL-CSPRPEMEIIQ-PFALSPWSSTLQDFI---- 934
Query: 172 EKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS- 230
+LS+ ++K Q Q + SKT EN+
Sbjct: 935 ----SLSACSMKKGSIQVGLTAQVDQTTFFQWSKTVGQ-----------------EENTN 973
Query: 231 VFSSELLAIFMLLSHICNTRSR---PEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNI 287
++ ++L I ++I + +R P Y ++F S LA S L++ I
Sbjct: 974 LYYTQLGGILEATTYISSITTRIKMPPYKIWTTIFTNNQSALQALAKPTRQSGQALLSQI 1033
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKL 347
+I + + V WI H G V+ P + M S + +K
Sbjct: 1034 THRIFSIHKTGMRVDLRWISKHDQTPG---VEARRHYHGVYPTQTQMHSAEKTCHRGRKS 1090
Query: 348 LSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHN-FLLKR 406
I+ L ++L D +R + + +LR GH+ L F + R
Sbjct: 1091 SCHHPFGQFTRAIDKALPSKHTESLY----DDLNREEASTLAQLRTGHARLNKFLFSINR 1146
Query: 407 EDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLG 449
D C + + S++H L +CR + HL+ D++ +G
Sbjct: 1147 TDSATCRCGHGEESVEHFLFQCRNWD------HLRTDMTRAMG 1183
>gi|212530056|ref|XP_002145185.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210074583|gb|EEA28670.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 425
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 30/219 (13%)
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVK 290
VF +EL+ + L R P I+R + LAL+ M+
Sbjct: 27 VFDAELVGVASALEWALG-RHLPGPIYR--LQSTEPGAGQSLALRAHMA----------- 72
Query: 291 INELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL------LSMMTSEDLKSAIK 344
+ L++ V W+P H GI GN Q D+ AK + + P LS+ + +
Sbjct: 73 ASRLRLSGRPVTIQWVPGHNGIEGNEQADQAAKRAASKPARPGFEGLSLAYVRRACTEAR 132
Query: 345 KKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL- 398
+ + W + N + RR + + D+ +R +L+ GH+ +
Sbjct: 133 RAAVENWA---RENAVQGAYRRGRAYKMPRGWGLDRIAAKAPKRVASRYYQLKTGHAPIG 189
Query: 399 THNFLLKREDPPLCEWCN-VQLSIQHILLECRKFRASRN 436
T+ +K D P C C ++ ++ HIL ECR R R
Sbjct: 190 TYLHRIKARDSPECRACGELRETVSHILFECRGRRGPRR 228
>gi|242825408|ref|XP_002488434.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712252|gb|EED11678.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 906
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 94/419 (22%), Positives = 166/419 (39%), Gaps = 75/419 (17%)
Query: 64 RIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT------- 115
R I+G + +PI +L E P +A Y + P ++P + IL
Sbjct: 437 RGITGMFPKTPIGALIREAALEPATVLLDARVARYTATLLALPDTHPTAQILPVTLRHGD 496
Query: 116 -HAQLGRNINRANLP---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPW 159
HAQ G P R SR D ++ +R+ AQ + RD E +
Sbjct: 497 LHAQPGEQ------PLDDREWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTEQY 548
Query: 160 EL-SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-- 216
EL S P I + + +E L+ + A F ++DGS+ A +
Sbjct: 549 ELKSFPGSIRVL-DNEEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVALQ 597
Query: 217 -----ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
E + + + VF +EL+ + L E ++I D+++++
Sbjct: 598 AVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWAL------ERQPLGPIWILLDAQNAI 651
Query: 272 LALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---Q 326
LK+ P LV + +L + V W+P H G+ GN Q D+ AK + Q
Sbjct: 652 DRLKSARPGPGQALVLRAHRAVEKLAMRGQPVTIQWVPGHSGVVGNEQADQAAKRAASKQ 711
Query: 327 NAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKLR-----RIKEDTLLWKSSF 378
AP ++ ++ A ++ +SEW + N + + R ++ +L +
Sbjct: 712 TAPGFEHLSLAYVRRACTEARRAAVSEWA---RINAVRGRHRDGRIYKMPRGWILDPVAG 768
Query: 379 DKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
+R +L+ GH+ + T+ + R + P C+ C +++H+L ECR R R
Sbjct: 769 KAPKRLASRYYQLKTGHAPIGTYLHRIGRRESPECQACKEPHETVRHVLFECRGRRTGR 827
>gi|2454622|gb|AAB71689.1| reverse transcriptase [Magnaporthe grisea]
Length = 1295
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 100/427 (23%), Positives = 160/427 (37%), Gaps = 68/427 (15%)
Query: 52 LSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK-CNPSNPV 110
L LN A R I AY+T+P ++ + G P YG R++ + +P+
Sbjct: 833 LKALNKPLVLAARAILPAYKTTPSSTVLRDAGLPSARVALAYTRLKYGARLRLADKGHPL 892
Query: 111 SLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLT 170
L RN + T+++ Q+ RI +R E AP + P+
Sbjct: 893 VSRLRETPRARNSGHSAT--TLQT---AAQLLPRI-----RRLELRAP--RNAPD----- 935
Query: 171 SEKKENLSSVAVKNAFFQF----KGENQNSLFCYTDGSKTAANSGCAYIT---------- 216
+ + V + A +F + + + YTDGS+ N+ C I
Sbjct: 936 -SRTDPTGGVPKEEAARRFIEWLDMVSPDDIVVYTDGSEKHENN-CVQIGYGWAAFRAGL 993
Query: 217 ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
E ++ + E+ VF +E AI L +++P ++IC DS S + L+
Sbjct: 994 EFAARAASITPESHVFDAE--AIGALKGLQAAAKAQPGA----RIWICVDSTSVIWGLRG 1047
Query: 277 IMSPNHLVNNILVKINELKIL---NITVKFLWIPSHLGIAGNVQVDELAKNSQNAP---- 329
+P L N + +L + V+ W P H GI GN + DELAK P
Sbjct: 1048 D-APRSSQWAFLEFHNLVDLLRKQSTEVRVRWCPGHQGIPGNDRADELAKAGSAGPPDPD 1106
Query: 330 LLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVIC 389
+ T+ + + +LS W + + +E WK F RKE
Sbjct: 1107 PRAQQTTYSGAGTVLRAILSNIEKDWWRKELCERSPAYRE----WK--FQYTPRKEPEEL 1160
Query: 390 RL-----------RIGHSHLT--HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
RL R GH H+ ++ C WC + S +H + CR RA
Sbjct: 1161 RLPRPLLGHYLAMRTGHGDFKAYHDRFNHQDANTSCAWCWKRTSPEHP-VHCRFSRAVWR 1219
Query: 437 KWHLKDD 443
W D+
Sbjct: 1220 NWPWPDN 1226
>gi|170051969|ref|XP_001862008.1| predicted protein [Culex quinquefasciatus]
gi|167872964|gb|EDS36347.1| predicted protein [Culex quinquefasciatus]
Length = 333
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 117/287 (40%), Gaps = 32/287 (11%)
Query: 194 QNSLFCYTDGSKTAANSGCAY-ITETESQV---FKLYNENSVFSSELLAIFMLLSHICNT 249
QNS+ TDGSK GC Y + + Q+ KL SVF +ELLAI + HI
Sbjct: 47 QNSIVFATDGSKD--EDGCGYAVVDGSFQIVKQIKLPKTVSVFLAELLAIRQAVQHIAQH 104
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 309
R E++ S + P V N I +L+ TV +W+P+H
Sbjct: 105 PGR-EFLILSDSLSSLSSLHNRSLQGTTPIPWFDVRN---HIMQLEQAGKTVSLMWVPAH 160
Query: 310 LGIAGNVQVDELAKN--SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNN----VINNK 363
+ N D AK + P + S D+ + K L +W +W N +
Sbjct: 161 RNVTLNEAADAAAKLACKEGEPETYQLNSWDISYPSRVKALHQWQNNWDNGDKGRFCHGI 220
Query: 364 LRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHS----HLTHNFLLKREDPPLCEWCNVQL 419
L R+ +++ F RR+ +++ + HS HL N ++ D CE
Sbjct: 221 LPRVSTTPWFYETEF--SRREIVILSKFISNHSRIATHLRRNNII---DDDTCECGLGAA 275
Query: 420 SIQHILLECRKFRASRNK-WH------LKDDISALLGDDHDEIYKCI 459
+ H+LL C + R + W + D+ +L + E+YKC+
Sbjct: 276 TPNHLLLTCDLYEDFRGELWRKIIRTGILPDLEVILKSKNFELYKCL 322
Score = 38.9 bits (89), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Query: 510 QNSLFCYTDGSKTAANSGCAY-ITETESQV---FKLYNENSVFSSELLAIFMLLSHIYST 565
QNS+ TDGSK GC Y + + Q+ KL SVF +ELLAI + HI
Sbjct: 47 QNSIVFATDGSKD--EDGCGYAVVDGSFQIVKQIKLPKTVSVFLAELLAIRQAVQHIAQH 104
Query: 566 SSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 625
R E++ S + P V N I +L+ TV +W+P+H
Sbjct: 105 PGR-EFLILSDSLSSLSSLHNRSLQGTTPIPWFDVRN---HIMQLEQAGKTVSLMWVPAH 160
Query: 626 LGIAGN 631
+ N
Sbjct: 161 RNVTLN 166
>gi|212545112|ref|XP_002152710.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210065679|gb|EEA19773.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 359
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 122/312 (39%), Gaps = 49/312 (15%)
Query: 145 ISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGS 204
I++ + R Y+ P + PE+ E++E + S + Q YTDGS
Sbjct: 2 INSSIKSRKAYLRPPWQAPPEVT--IQEREEAIKSHNMTTDDIQI----------YTDGS 49
Query: 205 KTAANSGCAYITETESQVFKLYNENS----VFSSELLAIFMLLSHICN------TRSRPE 254
G + K Y + V+++EL I M L I R+R
Sbjct: 50 GHNGQIGAGMVVPGMGITRKAYLGTTGSFLVYAAELRGIVMALEAIQQYSQQRIARARNR 109
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL------NITVKFLWIPS 308
++ R + I TD+++ ALK ++ P I ++ + LKIL NITV F WIP
Sbjct: 110 WLGR-GIRIYTDNQA---ALKALIRPRMASGQIYLR-DALKILTWCENNNITVSFHWIPG 164
Query: 309 HLGIAGN---------VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNV 359
H G+ GN + + L+ + + ++ +K + W WK
Sbjct: 165 HEGVEGNEAADRAAKEAAEQGYVQGRDHIHWLAAVAKQRVRQGVK----AAWERLWKRQR 220
Query: 360 INNKLRRIKEDTLLWKSSFDKDRRKEI--VICRLRIGHSHLTHNF-LLKREDPPLCEWCN 416
+RI E + + RK ++ +LR G L+H +K D C
Sbjct: 221 SAKPTKRIIETPHTNNLQYWQSLRKATTSILIQLRTGKIGLSHYLSRIKVRDSAQCGCGL 280
Query: 417 VQLSIQHILLEC 428
+ +H++L C
Sbjct: 281 GSQTPRHVVLIC 292
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 85/206 (41%), Gaps = 33/206 (16%)
Query: 460 IISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDG 519
+I++ + R Y+ P + PE+ E++E + S + Q YTDG
Sbjct: 1 MINSSIKSRKAYLRPPWQAPPEVT--IQEREEAIKSHNMTTDDIQI----------YTDG 48
Query: 520 SKTAANSGCAYITETESQVFKLYNENS----VFSSELLAIFMLLSHIYSTS------SRT 569
S G + K Y + V+++EL I M L I S +R
Sbjct: 49 SGHNGQIGAGMVVPGMGITRKAYLGTTGSFLVYAAELRGIVMALEAIQQYSQQRIARARN 108
Query: 570 EYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKIL------NITVKFLWIP 623
++ R I I TD+++ ALK ++ P I ++ + LKIL NITV F WIP
Sbjct: 109 RWLGR-GIRIYTDNQA---ALKALIRPRMASGQIYLR-DALKILTWCENNNITVSFHWIP 163
Query: 624 SHLGIAGNVQVPFLEILKSSYKYIQS 649
H G+ GN + Y+Q
Sbjct: 164 GHEGVEGNEAADRAAKEAAEQGYVQG 189
>gi|325089740|gb|EGC43050.1| WD40 repeat-containing protein [Ajellomyces capsulatus H88]
Length = 2052
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)
Query: 279 SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAP----LLSMM 334
S +V+ IL + +L+ NI V+ +P H GN D LAK + + +++
Sbjct: 1881 SGQQIVHAILRVVKDLESQNIHVRLQCVPGHCNNPGNDTADFLAKEAADPQPSHNFRNLL 1940
Query: 335 TSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKE--DTLLWKSSFDK-DRRKEIVICRL 391
T E I+ ++LSEW WK + LR++ ++ + +D R + ++ +L
Sbjct: 1941 TQE--TGLIRNRILSEWENEWKGSNKGGNLRQLDAALPSIHTRRLYDSLPRNRADLLSQL 1998
Query: 392 RIGHSHLT-HNFLLKREDPPLCEWCNVQLSIQHILLECRKF 431
R GHS L H L + + CE C + ++ H+L++C K
Sbjct: 1999 RTGHSWLALHGKLRRLREDDKCE-CGAKETVLHVLIDCPKL 2038
>gi|358376556|dbj|GAA93101.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 922
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 135/334 (40%), Gaps = 29/334 (8%)
Query: 29 FYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAEN---G 83
+ A V P++DY + ++ + ++ L +L T+ L A+RT ++L E+
Sbjct: 465 YQACVVPVLDYASTVWHNPLKDKTHLRQLATIQRAVLIRNLSAFRTVSTQALEVESYTLS 524
Query: 84 QP-PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIF 142
P L+ R +++ A+ T + +P + V + A+ + P R DL+
Sbjct: 525 TPLRLKQRAQLVAASLSTMPEHHPIHEV-MDRARARSTHLGHHCYFPLAKTLRTMDLR-- 581
Query: 143 DRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVK-----NAFFQFKGENQNSL 197
R+ A +APW I + +++ + A + F QN L
Sbjct: 582 -RLRALETIDPNPLAPWRAQAFADIEIEQNREQAKENAATRRDMPGTTVFSDASGQQNHL 640
Query: 198 FCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLS---HICNTRSRPE 254
G+ A +G +E SV+++EL+AIF +S + R
Sbjct: 641 -----GAAAVALNGDLQASEWRQVSIGSMEHWSVYAAELMAIFYAISLVLQVTQKRQSQS 695
Query: 255 YIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
I +DS S+L A++N S + IL +E+K I ++ W+P H
Sbjct: 696 DKVEHPATILSDSMSALQAIRNPSNRSGQRTIRAILQAASEMKARGIPIRLQWVPGHCND 755
Query: 313 AGNVQVDELAKN----SQNAPLLSMMTSEDLKSA 342
GN + D LAK S+ P +++ E S
Sbjct: 756 PGNDEADRLAKEAVGPSKMHPFQPLLSRERASSG 789
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 472 IAPWELSVPEIIYLTSEKKENLSSVAVK-----NAFFQFKGENQNSLFCYTDGSKTAANS 526
+APW I + +++ + A + F QN L G+ A +
Sbjct: 594 LAPWRAQAFADIEIEQNREQAKENAATRRDMPGTTVFSDASGQQNHL-----GAAAVALN 648
Query: 527 GCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-------YSTSSRTEYIFRDSIFI 579
G +E SV+++EL+AIF +S + S S + E+ I
Sbjct: 649 GDLQASEWRQVSIGSMEHWSVYAAELMAIFYAISLVLQVTQKRQSQSDKVEH----PATI 704
Query: 580 CTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+DS S+L A++N S + IL +E+K I ++ W+P H GN
Sbjct: 705 LSDSMSALQAIRNPSNRSGQRTIRAILQAASEMKARGIPIRLQWVPGHCNDPGN 758
>gi|242786247|ref|XP_002480768.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
gi|218720915|gb|EED20334.1| hypothetical protein TSTA_035600 [Talaromyces stipitatus ATCC
10500]
Length = 278
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 292 NELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKK 345
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A ++
Sbjct: 46 EKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEARR 105
Query: 346 KLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL-T 399
+SEW + N + + R R+ + W + + V R L+ GH+ + T
Sbjct: 106 AAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRVASRYYQLKTGHAPIGT 162
Query: 400 HNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 163 YLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 199
>gi|242825438|ref|XP_002488440.1| reverse transcriptase [C. elegans], putative [Talaromyces stipitatus
ATCC 10500]
gi|218712258|gb|EED11684.1| reverse transcriptase [C. elegans], putative [Talaromyces stipitatus
ATCC 10500]
Length = 1129
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 109/479 (22%), Positives = 188/479 (39%), Gaps = 69/479 (14%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY--------GAVIYGSATQSSLS 53
K+ K + L + TWG L +++ A ++P + Y G + A +++
Sbjct: 610 KAAKLVAGLSSIAGSTWGTPLVHLRKIYTAVLQPQIMYACSTWYIRGGRGFTGAQRAAEQ 669
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ ++ AL ISGA++ + ++L PP E L R+ +P L
Sbjct: 670 AIRSIQDQALHQISGAFKRTSRQALEVCLHVPPAELTLAKLAEEACLRIMTSP-----LR 724
Query: 114 LTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEK 173
T Q+ R N P T + I ++ + +R E I P VP +
Sbjct: 725 STLYQI-RGQAHCNDPYTSPLHRLETAIDRKLGSDTSQRIETIYP--FVVPPWWEPLEAR 781
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLY---NENS 230
+N A+K A G + F +TDGS G A + + Q +K + ++
Sbjct: 782 IDNTREEAIK-AIEAILGTDTTIQF-FTDGSGFDNGIGAA-VYLSIGQAYKPVGSSDTHT 838
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVK 290
V++ EL I L + RS+P I TD+++ A++ P +++
Sbjct: 839 VYAGELEGIDAALEILL--RSQPCDDNPHEATIYTDNQA---AIRATCQPGRSSGQYILR 893
Query: 291 --INELKILN-----ITVKFLWIPSHLGIAGNVQVDELAK-------------------- 323
+ L +L V+ W+P H G+ GN + D+LAK
Sbjct: 894 RIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEKADQLAKLAAVEATRRTQENARIARIS 953
Query: 324 -NSQNAPLLSMMT-----SEDLKSAIKKKLLS----EWHLHWKNNVINNKLRR-IKEDTL 372
+Q P + M+ S L + +++L + W W++ L R IK T
Sbjct: 954 APNQTTPHAARMSYIPNQSTILMAVCRQRLHAGFAKRWKEQWEHANHGRHLYRIIKAPTK 1013
Query: 373 LWKSSFDKDRRK-EIVICRLRIGHSHLTHNFL--LKREDPPLCEWCNVQLSIQHILLEC 428
+ + RR V+ +L+ G S L +FL ++ ED P CE H+L+ C
Sbjct: 1014 MVLQLHEGLRRAWSSVLIQLQTGKSAL-RSFLASVRIEDSPQCECGLGDQDTAHVLIRC 1071
>gi|443691945|gb|ELT93673.1| hypothetical protein CAPTEDRAFT_224783 [Capitella teleta]
Length = 354
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
S++++EL+AI L I + D IC+ S SSL AL N + + +IL
Sbjct: 2 SIYTAELIAIEQALIFIETMKDE------DQFNICSYSLSSLTALSNCDITHPYLLSILS 55
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSM-MTSEDLKSAIKKKLL 348
K N L V F+W PSHLGI GN D LAK + P+ + + D KS I+ +
Sbjct: 56 KQNNLVRKGKLVVFVWCPSHLGILGNEVADRLAKQALVMPVTKLPLPQTDYKSPIRSYVK 115
Query: 349 SEWH 352
S W
Sbjct: 116 SLWQ 119
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILV 605
S++++EL+AI L I+ + + E D IC+ S SSL AL N + + +IL
Sbjct: 2 SIYTAELIAIEQAL--IFIETMKDE----DQFNICSYSLSSLTALSNCDITHPYLLSILS 55
Query: 606 KINELKILNITVKFLWIPSHLGIAGN 631
K N L V F+W PSHLGI GN
Sbjct: 56 KQNNLVRKGKLVVFVWCPSHLGILGN 81
>gi|321466291|gb|EFX77287.1| hypothetical protein DAPPUDRAFT_247862 [Daphnia pulex]
Length = 211
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 28/198 (14%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINEL----KILNITVKFLWIPSHLG 311
+F+ V D S A+K I S H N+ + EL K WIPSH G
Sbjct: 16 MFKSLVRSKIDYSDSSTAIKTIASNTHTDNDTVATTRELIASLKSSGTLTTLAWIPSHTG 75
Query: 312 IAGNVQVDELAKN-----SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRR 366
I GN D LA N S N + + SE++ S +K +W +++ + L+
Sbjct: 76 IEGNETADRLASNECANPSGNQATIQLSPSEEI-STVKP--------NWAGSLLQS-LKC 125
Query: 367 IKEDTLLWKSSFD-------KDRRKEIVICRLRIGHSHLT--HNFLLKREDPPLCEWCNV 417
++ + KS +R+ I + RLR G+ HL + + + EDP C
Sbjct: 126 CQKKCVTTKSRIGIIKWHQHHNRQTAICLHRLRTGNHHLNSFRHRIDQEEDPSCRNGCEA 185
Query: 418 QLSIQHILLECRKFRASR 435
H++ CRK A R
Sbjct: 186 IEDSNHVITSCRKNEAHR 203
>gi|242797147|ref|XP_002482953.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218719541|gb|EED18961.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1538
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 106/245 (43%), Gaps = 48/245 (19%)
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNHLVNN 286
E +VF +EL+ I M L + R IF DS++++ A+ + ++ +
Sbjct: 1265 EANVFLAELVGIHMALEMVQQRIVRKMIIF-------YDSQAAIQAIDGAQKTGQQILGS 1317
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS-----------QNAPLLSMMT 335
I K +EL+ + V WIP+H GI GN + D AK + + PL T
Sbjct: 1318 IAEKWDELRSQGVQVTIHWIPAHQGIEGNERADIAAKEATGWRLVRNNRGRQVPLDMDST 1377
Query: 336 SEDLK------SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI--- 386
+ L SA+K+ L + L +K N + + TL DK +K I
Sbjct: 1378 APRLVGLQQPLSALKRDLKT---LAYKQWEQNWQQ-NQRGRTLF--RVVDKPSKKNIELH 1431
Query: 387 ---------VICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQHILLECRKFRA 433
++ ++R G+ L H FL KR+ P + C+ ++ HILL C +F+
Sbjct: 1432 TRLSRPLSSILTQMRTGNISLRH-FLYKRKIPGIDNGECQCQRGAQTVTHILLSCPRFKE 1490
Query: 434 SRNKW 438
RN W
Sbjct: 1491 ERNAW 1495
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 544 ENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIM-SPNHLVNN 602
E +VF +EL+ I M L + R IF DS++++ A+ + ++ +
Sbjct: 1265 EANVFLAELVGIHMALEMVQQRIVRKMIIF-------YDSQAAIQAIDGAQKTGQQILGS 1317
Query: 603 ILVKINELKILNITVKFLWIPSHLGIAGN 631
I K +EL+ + V WIP+H GI GN
Sbjct: 1318 IAEKWDELRSQGVQVTIHWIPAHQGIEGN 1346
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-------SLSK 54
K K++ L L TWG L +++ A + P + Y A I+ + S ++ K
Sbjct: 1089 KMTKSLGALSSLAGSTWGTGYKGLRQVYQATILPQITYAASIWYAPLNSEDNHREKAVGK 1148
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPS 107
L + A RII GA++T +L E P+ + A R++ PS
Sbjct: 1149 LEAIQKKAARIIIGAFKTVSGAALDIEAFLLPIRIHLNKITAETYLRIRSTPS 1201
>gi|353241646|emb|CCA73447.1| hypothetical protein PIIN_07401 [Piriformospora indica DSM 11827]
Length = 1244
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 105/498 (21%), Positives = 202/498 (40%), Gaps = 87/498 (17%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLS------------KLNTVYHTALRII 66
GL +L+ A P + Y A ++ + +S + KL + A I
Sbjct: 744 GLPIRMGRQLYKAVAIPRIQYAADLWYTPPHASTNETKRAGSVAVTNKLQGIQRRATIGI 803
Query: 67 SGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINR 125
+GA RT+ ++L P+E + R+ P ++P+S + G+ + R
Sbjct: 804 TGALRTTAGDALDIHINLLPIEVSLGLACRKAAARLASLPNTHPLSKFVKQMWKGK-VQR 862
Query: 126 ANLP-----RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSS- 179
N P T + ++ D +K P++L++ + L E+ + +S+
Sbjct: 863 HNTPLHYLFHTAGIDIASMEKID----PSLKNPNLAYPFKLTIDKSRELAIERDKEISTQ 918
Query: 180 -VAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLA 238
VA+ +G + Y +G + C T+T+ ++V EL+
Sbjct: 919 DVAIYTDGSGMEGMISAAAVLYRNGRRVKTVR-CLLGTDTQ---------HTVHEGELVG 968
Query: 239 IFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS--PNHLVNNILVKINELKI 296
I + + H+ +S P + + V I D+++++ ++ ++ + H+V I+ ++ L+
Sbjct: 969 IALGV-HLA--KSIPAKVAK--VNISLDNQAAIQSITHLGANAGQHVVARIVKELESLRA 1023
Query: 297 LN------------------ITVKFLWIPSHLGIAGNVQVDELAKN--SQNA-------- 328
+ ++F W+P H G+ GN DE AK ++ A
Sbjct: 1024 GRNRRNATKSSKDQLSVQRALRIEFTWVPGHEGVQGNEAADEEAKKAITEGASGLSEHPK 1083
Query: 329 ----PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKE--DTLLWKSSFDK-D 381
PL S +++ K K+ E W N+ N++ +I E + + DK
Sbjct: 1084 WLRKPLPSNLSA--AKQECKRLAKEEARELWSNSKQFNRMSKIDETMPSGRYLKLTDKLP 1141
Query: 382 RRKEIVICRLRIGHSHLT-HNFLLKREDPPLCEWCNVQ--LSIQHILLECRKFRASRNKW 438
RR ++ +L GH L H + R D P C C + ++ HIL C K+R +R +W
Sbjct: 1142 RRDAALLIQLHTGHIGLNGHLNRINRADSPWCPHCGERNFENLTHILYICPKYREARREW 1201
Query: 439 HLK-----DDISALLGDD 451
+D+ +LG +
Sbjct: 1202 ERSLQEKTEDLKEVLGSE 1219
>gi|7510992|pir||T27754 hypothetical protein ZK1320.8 - Caenorhabditis elegans
Length = 472
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGS-ATQSSLSKLNTVYH 60
K + + NILK L+ WG S+ L+ A V+PI YGA + ++++L+KL Y
Sbjct: 197 KMMVSTNILKALSGTKWGCSKELLISTAKALVKPIAIYGAPAWSQLLSETNLNKLEAAYR 256
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLE 88
LR G +PIE +YAE PL+
Sbjct: 257 NTLRTCCGLTSDTPIEHIYAEAQMMPLK 284
>gi|322712751|gb|EFZ04324.1| reverse transcriptase, putative [Metarhizium anisopliae ARSEF 23]
Length = 345
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 200 YTDGSKTAANSGCAYITET---------ESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
YTDGS+ + G A I+ ++ + ++V+S+EL + + L +
Sbjct: 26 YTDGSRIDGHVGEAAISPALQIDGVCAKRTECMGTSDISTVYSAELRGLALALKMALDVS 85
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPS 308
+ I TD+++++ A++N+ P+ +++ + ++EL+ ++F WIP+
Sbjct: 86 LATHCAGK--CTISTDNQAAIQAMRNLKHPSGQYILAEAIQALDELRGHGWDMQFRWIPA 143
Query: 309 HLGIAGNVQVDELAKNSQNAPLLSMMTSE-------------DLKSAIKKKLLSEWHLHW 355
H+G+ GN D+ AK + S T+E KSAI+K + +EW W
Sbjct: 144 HVGVPGNEAADKAAKEAAGHNANSRQTAEPPPEPEHLRALMAPAKSAIRKTMKAEWKASW 203
Query: 356 KNNVINNKLRRIK------EDTLLWKSS 377
+ +L R+ +D LWK +
Sbjct: 204 ETAKHGKELFRLGVKPGKWKDAHLWKDA 231
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 65/127 (51%), Gaps = 13/127 (10%)
Query: 516 YTDGSKTAANSGCAYITET---------ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
YTDGS+ + G A I+ ++ + ++V+S+EL + + L S
Sbjct: 26 YTDGSRIDGHVGEAAISPALQIDGVCAKRTECMGTSDISTVYSAELRGLALALKMALDVS 85
Query: 567 SRTEYIFRDSIFICTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPS 624
T + I TD+++++ A++N+ P+ +++ + ++EL+ ++F WIP+
Sbjct: 86 LATHCAGK--CTISTDNQAAIQAMRNLKHPSGQYILAEAIQALDELRGHGWDMQFRWIPA 143
Query: 625 HLGIAGN 631
H+G+ GN
Sbjct: 144 HVGVPGN 150
>gi|443730003|gb|ELU15698.1| hypothetical protein CAPTEDRAFT_201116 [Capitella teleta]
Length = 243
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 10/147 (6%)
Query: 262 FICTDSKS---SLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
++C S SL AL N + + +IL K N L V F+W PSH+GI GN
Sbjct: 97 YLCLPSSRTIRSLTALSNCDITHPYLLSILTKQNNLVRKGKLVVFIWCPSHVGILGNEVA 156
Query: 319 DELAKNSQNAPLLSM-MTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSS 377
D LAK + P+ + + D KS I+ + S W W +NKL I+ WK
Sbjct: 157 DRLAKQALVMPVTKLPLPHTDYKSPIRSYVKSLWQNEWDEET-DNKLHSIQPVISEWKQG 215
Query: 378 FDKDRRK-----EIVICRLRIGHSHLT 399
DRR E+V R+ G +T
Sbjct: 216 PQIDRRAVLTATEVVQSRILRGIPSIT 242
>gi|442759667|gb|JAA71992.1| Putative outcast ele5 orf1 -h 1e-40 -j 4 [Ixodes ricinus]
Length = 116
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNSQNAPL-LSMMTSEDLKSAIKKKLLSEWHLHWKNNV 359
+ W+PS +GI GN D +A ++++ + L + D K A+KK W W N
Sbjct: 26 ITLCWVPSRVGIPGNEDADRVASSAKDRQVDLHKIPYTDYKHALKKSTKCRWQEEW-NRE 84
Query: 360 INNKLRRIKEDTLLWKSSFDKDRRKEIVICRL 391
+NNKL +K W+S+ ++R E+V+CRL
Sbjct: 85 MNNKLHAVKPLIQEWESARHRERFYEVVLCRL 116
>gi|443699889|gb|ELT99143.1| hypothetical protein CAPTEDRAFT_215477 [Capitella teleta]
Length = 347
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 38 DYGAVIYGSATQSSLSKL----NTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKI 93
DYGA++YGSA L +L N A I GA+RTSPI SL+ E + P+ R +
Sbjct: 50 DYGALVYGSAQPLYLERLKPMQNQAEAQAKSICLGAFRTSPITSLHVEANEMPMPIRHQF 109
Query: 94 LLANYGTRVKCNPSNPVS 111
L ++ RV N +NP +
Sbjct: 110 LSLHFALRVYANVANPAN 127
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 224 KLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHL 283
+L + S+FS+ELLAI+ +L+ + S + + I TDS SSL AL N +
Sbjct: 160 RLPDSASIFSAELLAIYEVLTLLECAASY------EQILIVTDSLSSLQALGNFNITHPY 213
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
V IL K L + LW PSH+G+ GN + D LAK +
Sbjct: 214 VFKILEKYTILYNRGFDLVMLWCPSHVGVVGNARADLLAKKA 255
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 540 KLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHL 599
+L + S+FS+ELLAI+ +L+ + +S + I I TDS SSL AL N +
Sbjct: 160 RLPDSASIFSAELLAIYEVLTLLECAASY------EQILIVTDSLSSLQALGNFNITHPY 213
Query: 600 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL 637
V IL K L + LW PSH+G+ GN + L
Sbjct: 214 VFKILEKYTILYNRGFDLVMLWCPSHVGVVGNARADLL 251
>gi|427798325|gb|JAA64614.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 339
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 18/174 (10%)
Query: 160 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 218
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 219 ES--QVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
+KL + ++ SEL A+ ++HI + + R +VF DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHI-----KEQPANRWAVFC--DSKAALQCLSS 240
Query: 277 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN 327
+ S LV I ++ + V F W+PSH I+GN DE A+ +Q
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCCISGNDLADEAAREAQG 294
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 18/162 (11%)
Query: 476 ELSVPEIIYLTSEKKENLSSVAVKNAFFQ-FKGENQNSLFCYTDGSKTAANSGCAYITET 534
LS+P I KK+NLS++A+K A + + YTDGS T +S A + +
Sbjct: 133 RLSIPGI-----RKKKNLSTLALKQAALDCLHTFYADRIHVYTDGSTTQTSSTGATVIPS 187
Query: 535 ES--QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN 592
+KL + ++ SEL A+ ++HI + +F DSK++L L +
Sbjct: 188 RHIHLTYKLCHVSTSTGSELAALRGAVNHIKEQPANRWAVF-------CDSKAALQCLSS 240
Query: 593 IM---SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ S LV I ++ + V F W+PSH I+GN
Sbjct: 241 ALRRGSYEQLVWEIREMLHNVTEQGHDVVFQWLPSHCCISGN 282
>gi|443706301|gb|ELU02423.1| hypothetical protein CAPTEDRAFT_206267 [Capitella teleta]
Length = 357
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFR 258
+TDGSK+ + + + +L + S+FS+ELL I+ +L+ + C + +++
Sbjct: 221 FTDGSKSDSAVAFSATADNLRIQIRLSDSASIFSAELLDIYQVLTLLECLANDQQQFL-- 278
Query: 259 DSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
I T+S SSL AL N + V IL K L I + W PSH+G+ GN +
Sbjct: 279 ----IATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGIDLVISWCPSHVGVMGNERA 334
Query: 319 DELAKNS 325
D LAK +
Sbjct: 335 DLLAKEA 341
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
+TDGSK+ + + + +L + S+FS+ELL I+ +L+ + ++ +
Sbjct: 221 FTDGSKSDSAVAFSATADNLRIQIRLSDSASIFSAELLDIYQVLTLLECLANDQQ----- 275
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVP 635
I T+S SSL AL N + V IL K L I + W PSH+G+ GN +
Sbjct: 276 QFLIATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGIDLVISWCPSHVGVMGNERAD 335
Query: 636 FL 637
L
Sbjct: 336 LL 337
>gi|296423236|ref|XP_002841161.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637395|emb|CAZ85352.1| unnamed protein product [Tuber melanosporum]
Length = 564
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 192 ENQNSLFCYTDGSKTAANSGCAYITETES------QVFKLYNENSVFSSELLAIFM---L 242
E + +TDGSK +G A + +S +++ L +++ +EL AI+ L
Sbjct: 347 EAGREVVVFTDGSKNGLEAGAAVWRKADSRGGEIKKMYGLGTRMTIYDAELYAIWKAIGL 406
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELK-ILNI 299
+ R + IC DS+++L +A I +HL ++ +L I
Sbjct: 407 GGRVARERGA------KKLTICADSQAALGVMARGTIGPGSHLALRGRAQMKDLHHTHGI 460
Query: 300 TVKFLWIPSHLGIAGNVQVDELAK 323
V W+ SH GI GN++VD+LA+
Sbjct: 461 DVALEWVRSHAGIRGNIRVDKLAR 484
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 68/152 (44%), Gaps = 12/152 (7%)
Query: 508 ENQNSLFCYTDGSKTAANSGCAYITETES------QVFKLYNENSVFSSELLAIFMLLSH 561
E + +TDGSK +G A + +S +++ L +++ +EL AI+ +
Sbjct: 347 EAGREVVVFTDGSKNGLEAGAAVWRKADSRGGEIKKMYGLGTRMTIYDAELYAIWKAIG- 405
Query: 562 IYSTSSRTEYIFRDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELK-ILNITVK 618
+ +R + IC DS+++L +A I +HL ++ +L I V
Sbjct: 406 LGGRVARERGA--KKLTICADSQAALGVMARGTIGPGSHLALRGRAQMKDLHHTHGIDVA 463
Query: 619 FLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD 650
W+ SH GI GN++V L + + Q D
Sbjct: 464 LEWVRSHAGIRGNIRVDKLARAACAIRQKQKD 495
>gi|353245158|emb|CCA76226.1| hypothetical protein PIIN_10219 [Piriformospora indica DSM 11827]
Length = 397
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 149/363 (41%), Gaps = 68/363 (18%)
Query: 107 SNPVSLILTHAQLGRNINRANLP-----RTVKSRLEDLQIFDRISAQVIKRDEYIAPWEL 161
++P+S + A G + R N P ++ S+++DL+ S + P+ +
Sbjct: 25 THPLSKFVKRASRGL-LQRHNAPLHRIFHSIDSKVDDLETITPAS----RNPNATNPFTI 79
Query: 162 SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----T 216
S+ E+ L E N + N + YTDGS G +
Sbjct: 80 SIEELRILAKEADNNSNG-------------NNKRVVVYTDGSGMEGMIGAGAVLYRDGV 126
Query: 217 ETESQVFKLY--NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLAL 274
S F L E++V EL+ I + + ++ E I + I D+++++ +
Sbjct: 127 RIRSARFLLGEDTEHTVHKGELIGIALGVQ-----LAKMERIIIPRIKISLDNQAAIQGM 181
Query: 275 KNI--MSPNHLVNNILVKINEL----KILNITVKFLWIPSHLGIAGNV----QVDELAKN 324
+N+ + H+++ I I+EL K + W+P H GI D L +N
Sbjct: 182 ENVSAKAGQHIIHKIHRAIDELRNNQKHRQELITLTWVPGHEGIEAATLPLWTKDTLPQN 241
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSF----DK 380
+S + E LK A +K H WK++ ++ R I D + + + DK
Sbjct: 242 ------ISALRQE-LKLAARKSA----HDKWKSSAWYDRTRPI--DKTMPSNKYLQITDK 288
Query: 381 DRRKEIV-ICRLRIGHSHLT-HNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
R E + +LRIGH L H + R D P C C N + +I H+L C + A++
Sbjct: 289 LMRAEAAALIQLRIGHIGLNKHLNCINRVDAPWCPHCGEGNAE-NITHLLHICPAYNAAQ 347
Query: 436 NKW 438
KW
Sbjct: 348 AKW 350
>gi|427791813|gb|JAA61358.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1000
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K +A+ +L+ L+++ G+ R LL ++ +VRP++++G V++ A L L +
Sbjct: 759 KGERAVGVLRRLSSRRSGMRRKALLMVYKMYVRPVLEFGCVLFSGAPAYKLRPLVLLERE 818
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
ALR+ G + LY E PPL ++ +L R+ +PSN ++
Sbjct: 819 ALRLCLGLPKFVANAVLYLEARTPPLLSQFNLLTVQSFLRLYESPSNHAQIVF 871
>gi|443686560|gb|ELT89792.1| hypothetical protein CAPTEDRAFT_191632 [Capitella teleta]
Length = 257
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI-CNTRSRPEYIFR 258
+TDGSK+ + + + +L + S+FS+ELL I+ +L+ + C + +++
Sbjct: 121 FTDGSKSDSAVAFSATADNLRIQIRLSDSASIFSAELLDIYQVLTLLECLANDQQQFL-- 178
Query: 259 DSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
I T+S SSL AL N + V IL K L I + W PSH+G+ GN +
Sbjct: 179 ----IATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGIDLVISWCPSHVGVMGNERA 234
Query: 319 DELAKNS 325
D LAK +
Sbjct: 235 DLLAKEA 241
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 516 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRD 575
+TDGSK+ + + + +L + S+FS+ELL I+ +L+ + ++ +
Sbjct: 121 FTDGSKSDSAVAFSATADNLRIQIRLSDSASIFSAELLDIYQVLTLLECLANDQQ----- 175
Query: 576 SIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVP 635
I T+S SSL AL N + V IL K L I + W PSH+G+ GN +
Sbjct: 176 QFLIATNSLSSLQALGNFNIKHPYVFKILEKCTLLHKKGIDLVISWCPSHVGVMGNERAD 235
Query: 636 FL 637
L
Sbjct: 236 LL 237
>gi|427791897|gb|JAA61400.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 998
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 92/220 (41%), Gaps = 30/220 (13%)
Query: 200 YTDGSKTAANSGCAYITETES------QVFKLYNENSVFSSELLAI-----FMLLSHICN 248
YTDGS +G A++ + + F L+N + + +E+LA F+L+S +
Sbjct: 736 YTDGSYLHNIAGAAFVAFNHNSSLITLRKFHLHNATTAYDAEILAFAEAIHFILISPL-- 793
Query: 249 TRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPS 308
+ V + TD S L+ L + + + NI ++++ + +I + +P+
Sbjct: 794 ---------KKPVHLYTDCLSILMRLASTNDSDTRLINIKHQLHKCYLQHIPIHLFHVPA 844
Query: 309 HLGIAGNVQVDELAKNSQNAPLL--SMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRR 366
H GI GN D A ++ + L+ S T ++ + L +WH HW+ N L
Sbjct: 845 HTGITGNEVADTAASCARTSGLIRSSKHTLPHIRKQFQTTLKLQWHSHWQQEGPNTSLYH 904
Query: 367 IKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKR 406
F +R + L GH H + LKR
Sbjct: 905 WIPTIHHIPHWFPPNRS----LTHLLTGHGHF--QYYLKR 938
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 516 YTDGSKTAANSGCAYITETES------QVFKLYNENSVFSSELLAI-----FMLLSHIYS 564
YTDGS +G A++ + + F L+N + + +E+LA F+L+S +
Sbjct: 736 YTDGSYLHNIAGAAFVAFNHNSSLITLRKFHLHNATTAYDAEILAFAEAIHFILISPL-- 793
Query: 565 TSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPS 624
+ + + TD S L+ L + + + NI ++++ + +I + +P+
Sbjct: 794 ---------KKPVHLYTDCLSILMRLASTNDSDTRLINIKHQLHKCYLQHIPIHLFHVPA 844
Query: 625 HLGIAGN 631
H GI GN
Sbjct: 845 HTGITGN 851
>gi|383860150|ref|XP_003705554.1| PREDICTED: leucine-rich repeat-containing protein 15-like
[Megachile rotundata]
Length = 635
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFS 233
K+N + ++ F + + E N + YTDGSKT SG A + ++ K +++ +F
Sbjct: 20 KKNSDPIMLEAIFQELEAEFANHVHIYTDGSKTRIGSGYAIVRNQSTEKVKFHHKTPIFL 79
Query: 234 SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINE 293
EL AI + ++ IF C DS S++ A++ + + + ++
Sbjct: 80 CELQAITHAIKSTLTDQNTNFAIF------C-DSTSAISAIQKLWTSDFVIQECQEAYTR 132
Query: 294 LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328
N ++ +WI SH+ I GN + D AK + N+
Sbjct: 133 SSQKNNSITIMWILSHIDITGNDKADRAAKEAANS 167
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 490 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFS 549
K+N + ++ F + + E N + YTDGSKT SG A + ++ K +++ +F
Sbjct: 20 KKNSDPIMLEAIFQELEAEFANHVHIYTDGSKTRIGSGYAIVRNQSTEKVKFHHKTPIFL 79
Query: 550 SELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINE 609
EL AI + + + IF C DS S++ A++ + + + ++
Sbjct: 80 CELQAITHAIKSTLTDQNTNFAIF------C-DSTSAISAIQKLWTSDFVIQECQEAYTR 132
Query: 610 LKILNITVKFLWIPSHLGIAGN 631
N ++ +WI SH+ I GN
Sbjct: 133 SSQKNNSITIMWILSHIDITGN 154
>gi|242826977|ref|XP_002488743.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712135|gb|EED11562.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 768
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 93/466 (19%), Positives = 171/466 (36%), Gaps = 82/466 (17%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---GSATQ----SSLSK 54
K+ ++ L+ L+ TWG++ + R++ A V P M YGA + G +Q ++SK
Sbjct: 257 KAGTSLEALRGLSGSTWGVALGSMRRIYQAIVIPQMLYGAAAWFQPGLMSQRQISQTISK 316
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
A +ISGA RT+ E L E P+ + L R++ P+
Sbjct: 317 FAITQKRAACLISGALRTTAAEVLNIELHLMPIRLQLDQLTKATAIRIRTGPA------- 369
Query: 115 THAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIA---PWELSVPEIIYLTS 171
I D ++ V+ + A PW+L +
Sbjct: 370 ------------------------FAIPDGLAIDVLMTNSSSADTLPWKLMLGR------ 399
Query: 172 EKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI----TETESQVFKLYN 227
+A++ +G Q + GS G + + + ++
Sbjct: 400 ----------RADAYWLPRGPWQGEGRADSHGSGYQGYIGTSMVIPAFGKQRTECIGTEG 449
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN--IMSPNHLVN 285
++V+++E I L + I + I +DS+++L L N ++S +
Sbjct: 450 TSTVYAAEACGIKFALETALQIAD--QNIQTKKLVIFSDSQAALRTLMNPRMVSGQTYIY 507
Query: 286 NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDL------ 339
+ + + + +I V WIP H GI GN D AK + + D+
Sbjct: 508 DCIDSLRKCIDEDIDVTLRWIPGHEGIPGNEAADRAAKRAALIGARRQIVPGDIGNWTIL 567
Query: 340 ----KSAIKKKLLSEWHLHWKNNVINNKLRRI----KEDTLLWKSSFDKDRRKEIVICRL 391
K I++ W W +++ + TL + + K ++ R
Sbjct: 568 AAAAKRRIRQSTKDAWEKQWDKQKAGKPTKKLVTQPSKRTLQYWTFLRKATSSILIQLRT 627
Query: 392 -RIGHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRN 436
RIG +H + + + R + P C S++HIL+EC + R
Sbjct: 628 ERIGLAH--YLWRINRREQPYCACGLSGQSVRHILMECPLYENERG 671
>gi|427784657|gb|JAA57780.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 454
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 31/286 (10%)
Query: 161 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQ-NSLFCYTDGSKTAANSGCAYITETE 219
LSVP I+ KK +S +A+K + E + + YTDGS + +S A + ++
Sbjct: 133 LSVPGIV-----KKARMSPLALKQLSLRLLDETYFDRMHVYTDGSTNSNSSTGAVVLPSD 187
Query: 220 SQV--FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI 277
+ F+ + + ++EL A+ + +I R IF DS+S+L AL+
Sbjct: 188 EVLLQFRYSHITTSTAAELAALQGAVKYILQQRPNRWAIF-------CDSRSALKALRLA 240
Query: 278 MSPN---HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA------ 328
+ V I +E + F +PSH GI GN DE A+++ +
Sbjct: 241 LRHGLHEQSVYEIRHDYHEELEEGHDIIFELLPSHCGIVGNDHADEAARSAHDQDLRTPI 300
Query: 329 PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVI 388
PLL + L+S ++ L +W+ N +L I + L S RR ++
Sbjct: 301 PLLRTDAARRLQSLARRIGLLQWN---TQGFYNARLCSIDPNLQLSLPS-GLPRRDATLL 356
Query: 389 CRLRIGHSHLTHNF--LLKREDPPLCEWCNVQLSIQHILLECRKFR 432
C + +G + T+ + L+ C C + +++HI+ C +R
Sbjct: 357 CSMWLGVA-FTNAYLCLIGMASRAACNICACEETLEHIISHCPSYR 401
>gi|116198791|ref|XP_001225207.1| hypothetical protein CHGG_07551 [Chaetomium globosum CBS 148.51]
gi|88178830|gb|EAQ86298.1| hypothetical protein CHGG_07551 [Chaetomium globosum CBS 148.51]
Length = 665
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 104/441 (23%), Positives = 176/441 (39%), Gaps = 54/441 (12%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 195 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 254
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
AE P+ R A+ + P ++P+++ RN R P +R+
Sbjct: 255 EAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKV-----RNTVRFVSPLQKIARVA 309
Query: 138 DLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL----------SSVAVKNAF 186
+ DR+ + I+ EY + PW + + K + +S +VK
Sbjct: 310 EGVRVDRM--ETIQ--EYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGI 365
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
G +++LF T S+T N V E + +++EL AI M L +
Sbjct: 366 VGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL 414
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVK 302
P I + + T ++S+L A+ + +I+ +I +L L+ +V
Sbjct: 415 ------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVN 466
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
FLWIP+ + A A+ + KS + + V
Sbjct: 467 FLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVG 526
Query: 363 KLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPLCEWC 415
K + + L K + +DK +RKE V+ +LR G + L N L R + LC
Sbjct: 527 KFSKAMDAALPGKHTRHLYDKLKRKEACVLAQLRTGMARL--NGFLSRIGAVESDLCACG 584
Query: 416 NVQLSIQHILLECRKFRASRN 436
+ S++H L C ++ A R
Sbjct: 585 QARESVEHFLFRCVRWTALRE 605
>gi|443712493|gb|ELU05785.1| hypothetical protein CAPTEDRAFT_193233 [Capitella teleta]
Length = 275
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 374 WKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPPLCEWCN 416
W S + R +EIV+ R RIGHSHLTH +LL+RE PP+C C
Sbjct: 21 WTKSSREIRLEEIVLARARIGHSHLTHGYLLRREMPPVCIPCQ 63
>gi|116201141|ref|XP_001226382.1| hypothetical protein CHGG_08455 [Chaetomium globosum CBS 148.51]
gi|88176973|gb|EAQ84441.1| hypothetical protein CHGG_08455 [Chaetomium globosum CBS 148.51]
Length = 1393
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 104/440 (23%), Positives = 177/440 (40%), Gaps = 54/440 (12%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN +I+GA+RT+ +
Sbjct: 932 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALVITGAFRTAATAVV 991
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
AE P+ R A+ + P ++P+++ RN R P +R+
Sbjct: 992 EAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKV-----RNTVRFVSPLQKIARVA 1046
Query: 138 DLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL----------SSVAVKNAF 186
+ DR+ + I+ EY + PW + + K + +S +VK
Sbjct: 1047 EGVRVDRM--ETIQ--EYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGI 1102
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
G +++LF T S+T N V E + +++EL AI M L +
Sbjct: 1103 VGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL 1151
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVK 302
P I + + T ++S+L A+ + +I+ +I +L L+ +V
Sbjct: 1152 ------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVN 1203
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
FLWIP+ + A A+ + KS + + V
Sbjct: 1204 FLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVG 1263
Query: 363 KLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPLCEWC 415
K + + L K + +DK +RKE V+ +LR G + L N L R + LC
Sbjct: 1264 KFSKAMDAALPGKHTRHLYDKLKRKEACVLAQLRTGMARL--NGFLSRIGAVESDLCACG 1321
Query: 416 NVQLSIQHILLECRKFRASR 435
+ S++H L C ++ A R
Sbjct: 1322 QARESVEHFLFRCVRWTALR 1341
>gi|242798615|ref|XP_002483206.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218716551|gb|EED15972.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 533
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/251 (21%), Positives = 107/251 (42%), Gaps = 31/251 (12%)
Query: 200 YTDGSKTAANSGCAYIT-------ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSR 252
++DGS+ A +T E + + + VF +EL+ + L
Sbjct: 206 WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWAL----- 260
Query: 253 PEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHL 310
E D +++ D+++++ L++ P LV +L + V W+P H
Sbjct: 261 -ERQPLDPIWVFLDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHS 319
Query: 311 GIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKL 364
GI GN Q D+ AK + Q AP ++ ++ A ++ +SEW + N + +
Sbjct: 320 GIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEARRAAVSEWA---QINAVQGRH 376
Query: 365 R--RIKEDTLLWKSSFDKDRRKEIVICR---LRIGHSHL-THNFLLKREDPPLCEWC-NV 417
R R+ + W + + + R L+ GH+ + T+ + + R + P C+ C
Sbjct: 377 RDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLYRIGRRESPECQACKEP 436
Query: 418 QLSIQHILLEC 428
+++H+L EC
Sbjct: 437 HETVRHVLFEC 447
>gi|156039972|ref|XP_001587093.1| hypothetical protein SS1G_12122 [Sclerotinia sclerotiorum 1980]
gi|154696179|gb|EDN95917.1| hypothetical protein SS1G_12122 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 654
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GLS + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 544 LANSEKGLSPKAMRQLYMACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKT 603
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILTHAQLGRN 122
SPI+ + E P E R + Y R +K +PS+PV + T + N
Sbjct: 604 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPVGFLKTRKSIRLN 654
>gi|242824216|ref|XP_002488214.1| hypothetical protein TSTA_005900 [Talaromyces stipitatus ATCC
10500]
gi|218713135|gb|EED12560.1| hypothetical protein TSTA_005900 [Talaromyces stipitatus ATCC
10500]
Length = 252
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 261 VFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQV 318
+++ D+++++ LK+ P LV + +L + V W+P H GI GN Q
Sbjct: 21 IWVFLDAQNAIDRLKSSRPGPGQALVLRAHRAVEKLAMRGQLVTIQWVPGHSGIEGNEQA 80
Query: 319 DELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKLR--RIKED 370
D+ AK + Q AP ++ ++ A ++ +SEW + N + + R R+ +
Sbjct: 81 DQAAKRAASKQTAPGFEHLSLAYVRRACTEARRAAVSEWA---RINAVQGRHRDGRVYKM 137
Query: 371 TLLWKSSFDKDRRKEIVICR---LRIGHSHL-THNFLLKREDPPLCEWCN-VQLSIQHIL 425
W + + + R L+ GH+ + T+ + R + P C+ C +++H+L
Sbjct: 138 PRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLHRIGRRESPECQACKEPHETVRHVL 197
Query: 426 LECRKFRASRN 436
ECR R R
Sbjct: 198 FECRGRRTGRR 208
>gi|212538803|ref|XP_002149557.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210069299|gb|EEA23390.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 1254
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 97/454 (21%), Positives = 177/454 (38%), Gaps = 56/454 (12%)
Query: 12 VLNNKTWGLSRACLLR------------LFYAFVRPIMDYGAVIYGSATQSSLSK-LNTV 58
+ N T GL+ A LR LF A V P+ DY + ++ A + ++ LN +
Sbjct: 766 IANTATKGLAAAMALRRLKMVTPQTARQLFKATVAPVADYASNVWMHACRVKGTRYLNRM 825
Query: 59 YHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT-- 115
++G++RT AE P R + ++ P SNP++ + T
Sbjct: 826 QKHGAIAVTGSFRTVATAVAEAEADIQPFYIRHAEKVTKLWVDIQTLPKSNPLARLRTVA 885
Query: 116 ----HAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTS 171
+ L R I+ L + R+E +Q F ++PW +P I
Sbjct: 886 TQRFRSPLQRIIH--PLEAMTEERIETIQAF------------TVSPWTNRIPSICETDE 931
Query: 172 EKKENLSSVAVK---NAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+K + ++ AV K + C D ++ + N +Y T + E
Sbjct: 932 DKAISNANKAVGILIATSTSIKSDKVGIGGCTRD-TRASGNDISSYST-----LLGKRTE 985
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
++ +++EL AI L I P ++ +FI + ++S+L A+ S +
Sbjct: 986 HNPYTAELEAIATSLERI------PWQTYQRCIFILSSNRSALSAISQPRQQSGQESIQR 1039
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKK 346
I ++ L+ V +WIP+H +A Q A+ + KS +
Sbjct: 1040 IYKRVQYLQQQGNAVVTIWIPTHSDMAVKQQAKAEARKATRVESPPEKPPHQAKSTAIRL 1099
Query: 347 LLSEWHLHWKNNVINNKLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHL-THN 401
L+E W + R + L K + +++ RKE ++ +LR G + L ++
Sbjct: 1100 ALAERQQEWTLPEHVGRYSRTVDIALPGKHTRNLYNRLNRKEAKILAQLRTGMTRLNSYL 1159
Query: 402 FLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
+ + D C +I+H L C ++ A R
Sbjct: 1160 YRIGAVDSNRCACGQASETIEHFLFRCTQWTAMR 1193
>gi|326483666|gb|EGE07676.1| hypothetical protein TEQG_08765 [Trichophyton equinum CBS 127.97]
Length = 405
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 155/349 (44%), Gaps = 54/349 (15%)
Query: 133 KSRLEDLQIFDRISAQV----------IKRDEYIAPWELSVPEII--YLTSEKKENLSSV 180
K +LE Q+F RI++++ + +I PW S+ +I ++ KE +
Sbjct: 21 KKKLEPSQLF-RITSKIASLLSNSKIEVVNQNWIKPWSQSLESLIDFKISQSSKE----I 75
Query: 181 AVKNAFFQFKG--ENQNSLFCYTDGSKTAAN---SGCAYITETESQVFKLYNENSVFSSE 235
A K K +N++S+ Y+DGSK + +G + + + L + VF +E
Sbjct: 76 AKKEHIDLLKEVLKNKDSIIYYSDGSKLDSGYLGAGIYNFRTSSYRSWGLGTDLEVFDAE 135
Query: 236 LLAIFML----LSHICNTRS--RPEYIF--RDSVFICTDSKSSLLALKN--IMSPNHLVN 285
L AI L I + S P +I+ + ++ DS++++ L+ + V+
Sbjct: 136 LFAIEQAFIKGLKAIKKSSSLINPLFIYSSKKEFWVFIDSQAAIQRLQKSYLEGGEMYVS 195
Query: 286 NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK------NSQNAPLLSMMTSEDL 339
I ELK + +K +W+P+H I GN + D AK +S++ + +
Sbjct: 196 RIRRIAKELKDRDYQIKIVWVPAHQNILGNEKADFAAKLGARSRDSRDILKNKYTSLATI 255
Query: 340 KSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTL------LWKSSFDKDRRK-EIVICRLR 392
K IK+ L EW+ ++ + R + +D L W+ S D +K +L+
Sbjct: 256 KRRIKEIALEEWN----QDLEEKRKRGLGKDYLPFQTTPKWQPSKDNWLKKLWSTRSQLK 311
Query: 393 IGHSHLTHNFL--LKREDPPLCEWC--NVQLSIQHILLECRKFRASRNK 437
+GH + ++L L R + C+ C N + + H+LL C ++ R +
Sbjct: 312 LGHGYF-RSYLRRLPRYNSQACQACEGNQKETPTHLLLLCSSYKEPRER 359
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 21/183 (11%)
Query: 471 YIAPWELSVPEII--YLTSEKKENLSSVAVKNAFFQFKG--ENQNSLFCYTDGSKTAAN- 525
+I PW S+ +I ++ KE +A K K +N++S+ Y+DGSK +
Sbjct: 52 WIKPWSQSLESLIDFKISQSSKE----IAKKEHIDLLKEVLKNKDSIIYYSDGSKLDSGY 107
Query: 526 --SGCAYITETESQVFKLYNENSVFSSELLAIFML----LSHIYSTSSRTEYIF----RD 575
+G + + + L + VF +EL AI L I +SS +F +
Sbjct: 108 LGAGIYNFRTSSYRSWGLGTDLEVFDAELFAIEQAFIKGLKAIKKSSSLINPLFIYSSKK 167
Query: 576 SIFICTDSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
++ DS++++ L+ + V+ I ELK + +K +W+P+H I GN +
Sbjct: 168 EFWVFIDSQAAIQRLQKSYLEGGEMYVSRIRRIAKELKDRDYQIKIVWVPAHQNILGNEK 227
Query: 634 VPF 636
F
Sbjct: 228 ADF 230
>gi|255931687|ref|XP_002557400.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582019|emb|CAP80183.1| Pc12g05560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 334
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 28/257 (10%)
Query: 195 NSLFCYTDGSKTAANSGCAYIT---------ETESQVFKLYNENSVFSSELLAIFMLLSH 245
+ + Y+D S + G A +T + QV + + SV ++EL+ I +
Sbjct: 10 SDVVVYSDASGRHGHLGAAAVTLDNNLEVAESVQIQVGSM-DRWSVHAAELIGILHAIEI 68
Query: 246 ICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH-----LVNNILVKINELKILNIT 300
+ S + + V + T S+ AL+ I +P + +++ IL K +T
Sbjct: 69 VNKVASERRRLHGEQVRLATILSDSMSALQAIQTPGNKSGQRIIHAILQAAINSKTHGVT 128
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWK 356
++ WIP H GN D LAK + + P +++ E K+ ++K + +W K
Sbjct: 129 IRLQWIPGHCAAPGNDSADRLAKEAAIPGKTHPFCPLLSRE--KAFVRKNIYDQWEKEXK 186
Query: 357 NNVINNKLRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPL 411
+ LR I ++ L K + R + ++ +LR GH L T +D
Sbjct: 187 ESKEGGNLRTI-DNALPAKYTRRLYGPLTRNRAHLLTQLRTGHCWLSTFAKAFHFQDNDR 245
Query: 412 CEWCNVQLSIQHILLEC 428
C C + +++H+L +C
Sbjct: 246 CV-CGDRETLKHVLWDC 261
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 511 NSLFCYTDGSKTAANSGCAYIT---------ETESQVFKLYNENSVFSSELLAIFMLLSH 561
+ + Y+D S + G A +T + QV + + SV ++EL+ I +
Sbjct: 10 SDVVVYSDASGRHGHLGAAAVTLDNNLEVAESVQIQVGSM-DRWSVHAAELIGILHAIEI 68
Query: 562 IYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNH-----LVNNILVKINELKILNIT 616
+ +S + + + + T S+ AL+ I +P + +++ IL K +T
Sbjct: 69 VNKVASERRRLHGEQVRLATILSDSMSALQAIQTPGNKSGQRIIHAILQAAINSKTHGVT 128
Query: 617 VKFLWIPSHLGIAGN 631
++ WIP H GN
Sbjct: 129 IRLQWIPGHCAAPGN 143
>gi|294872352|ref|XP_002766253.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239866960|gb|EEQ98970.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1013
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 105/249 (42%), Gaps = 31/249 (12%)
Query: 200 YTDGSKTAANSGCAYI-----TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
+TDGSK +G A+I + E Q F+L ++ EL AI L I + + +
Sbjct: 738 FTDGSKHGDGAGGAFIAIIDGSAVEKQSFRLPRYATIHQCELEAIRRALRWIAFSEHKGK 797
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+R VF TDS++S+L +KN ++ + I I L +L + W P H G
Sbjct: 798 Q-WR--VF--TDSQASILTIKNRVTTER--SGIAQDIARLSLL-VRADIHWCPGHEGARW 849
Query: 315 NVQVDELAKNSQNA--PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDT- 371
N +VD LA + A P L S + +A KK+ E +K R +
Sbjct: 850 NEEVDVLANIGRKAFFP-LDRYPSPQVSTAFIKKMAKEAASESTRQWWIDKRRTLGTSVK 908
Query: 372 -LLWKSSFDKDRRKEIVICRLRIGHSHLTHN--FLLKREDPPL-CEWCNVQLSIQHILLE 427
LW S K L+ GH+ H+ + R DP C W N ++H+L +
Sbjct: 909 DFLWGYSHAKR--------YLKAGHAPTPHHRCTMGIRADPSCPCGWDNGD--VKHLLRD 958
Query: 428 CRKFRASRN 436
C +R
Sbjct: 959 CPLLDGARR 967
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 516 YTDGSKTAANSGCAYI-----TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
+TDGSK +G A+I + E Q F+L ++ EL AI L I + + +
Sbjct: 738 FTDGSKHGDGAGGAFIAIIDGSAVEKQSFRLPRYATIHQCELEAIRRALRWIAFSEHKGK 797
Query: 571 YIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 630
+R + TDS++S+L +KN ++ + I I L +L + W P H G
Sbjct: 798 Q-WR----VFTDSQASILTIKNRVTTER--SGIAQDIARLSLL-VRADIHWCPGHEGARW 849
Query: 631 NVQVPFL 637
N +V L
Sbjct: 850 NEEVDVL 856
>gi|393223141|gb|EJD32170.1| hypothetical protein AURDEDRAFT_44782, partial [Auricularia
delicata TFB-10046 SS5]
Length = 273
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ KA L++L N GL + + RL+ A +RPI+ Y + ++ + +L+ V +
Sbjct: 183 KARKAAMALRMLGNTVRGLHQGHMRRLYIACIRPILIYASAVWWMQMAWQVQQLSRVQNL 242
Query: 62 ALRIISGAYRTSPIESLYAENGQPPL 87
LR+I ++TSPI +L E PP+
Sbjct: 243 CLRLICAVFKTSPIYALEIEAAIPPI 268
>gi|156051482|ref|XP_001591702.1| hypothetical protein SS1G_07148 [Sclerotinia sclerotiorum 1980]
gi|154704926|gb|EDO04665.1| hypothetical protein SS1G_07148 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 493
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 13 LNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRT 72
L N GL+ + +L+ A V I DYG++++ L ++ + ALR I G ++T
Sbjct: 337 LANSEKGLNPKAMRQLYMACVTSIADYGSILWWKEQNQIKKTLQSLQNLALRKILGVFKT 396
Query: 73 SPIESLYAENGQPPLETRRKILLANYGTR-VKCNPSNPVSLILT 115
SPI+ + E P E R + Y R +K +PS+P++LI T
Sbjct: 397 SPIKPMEIEAALCPPEVRLNAGIKQYAFRLLKISPSHPINLIAT 440
>gi|294947382|ref|XP_002785360.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239899133|gb|EER17156.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1627
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 107/254 (42%), Gaps = 41/254 (16%)
Query: 200 YTDGSKTAANSGCAYITETES-----QVFKLYNENSVFSSELLAIFMLLSHICNTRSRP- 253
YTDGSK ++G A++ E Q FKL ++ EL AI L + ++ R
Sbjct: 1350 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSHSAHRGI 1409
Query: 254 EYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
E++ + TDS++S+ ++ + + I I L L++ V+ W P H G+
Sbjct: 1410 EWL------LFTDSQASIRTIRGREATER--SAIARDIAHLG-LHVQVQLNWCPGHEGVQ 1460
Query: 314 GNVQVDELAKNSQNA--PL---LSMMTSED-LKSAIKKKLLSEWHLHW--KNNVINNKLR 365
N VD+LA + PL +MM +K +K ++ + W K + +R
Sbjct: 1461 WNEAVDQLANTGRKQLFPLDRGAAMMVPPSYVKHMLKTQMEKDTRSWWLDKRATLGTSVR 1520
Query: 366 RIKEDTLLWKSSFDKDRRKEIVICRLRIGHS---HLTHNFLLKREDPPLCEWCNVQLSIQ 422
LW F RR L+ GH+ H H L+ + P C + ++
Sbjct: 1521 -----DFLW--GFSHARRF------LKAGHAPTPHHRHTMGLRTD--PSCPCGHADGDVK 1565
Query: 423 HILLECRKFRASRN 436
HIL +C +R
Sbjct: 1566 HILRDCPLLDGARR 1579
>gi|116178750|ref|XP_001219224.1| hypothetical protein CHGG_00003 [Chaetomium globosum CBS 148.51]
gi|88184300|gb|EAQ91768.1| hypothetical protein CHGG_00003 [Chaetomium globosum CBS 148.51]
Length = 1755
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 106/445 (23%), Positives = 184/445 (41%), Gaps = 64/445 (14%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIY-GSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ + +LS LN I+GA+RT+ +
Sbjct: 1285 LSPRTARQLFVATVAPVMDYAANVWMHGCGEKALSWLNRAQKIGALAITGAFRTAATAVV 1344
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
AE P+ R A+ + P ++P+++ RN R P +R+
Sbjct: 1345 EAEASIHPVRERHAQAAASLWINIHTLPGTHPLAMKKV-----RNTVRFVSPLQKIARVA 1399
Query: 138 DLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL----------SSVAVKNAF 186
+ DR+ + I+ EY + PW + + K + +S +VK
Sbjct: 1400 EGVRVDRM--ETIQ--EYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGI 1455
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
G +++LF T S+T N V E + +++EL AI M L +
Sbjct: 1456 VGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL 1504
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVK 302
P I + + T ++S+L A+ + +I+ +I +L L+ +V
Sbjct: 1505 ------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVN 1556
Query: 303 FLWIPSHLGIAGNVQVDELAKNS--QNAPLLSMMT---SEDLKSAIKKKLLSEWHLHWKN 357
FLWIP+ + A A+ + Q S M S ++ A++++L +
Sbjct: 1557 FLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQMPQAKSTAMRLAMERQLTTR-----VL 1611
Query: 358 NVINNKLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPP 410
V K + + L K + +DK +R+E V+ +LR G + L N L R +
Sbjct: 1612 PVGVGKFSKAMDAALPGKHTRDLYDKLKRREAGVLAQLRTGMARL--NGFLSRIGAVESD 1669
Query: 411 LCEWCNVQLSIQHILLECRKFRASR 435
LC + S++H L C ++ A R
Sbjct: 1670 LCACGQARESVEHFLFRCVRWTALR 1694
>gi|400593545|gb|EJP61480.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 171
Score = 55.1 bits (131), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 200 YTDGSKTAANSGCA-------YITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSR 252
YTDGS GC I+ Q + ++V+++EL + + L + N
Sbjct: 9 YTDGSGINRWCGCVCSGLQFDTISTKWIQYMGTSDVSTVYTAELRGLVLALQLVLNVHKT 68
Query: 253 PEYIFRDSVFICTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHL 310
+ R ++F TD++++L AL+N P+ +++ + ++EL+ L ++++F WIP+H+
Sbjct: 69 GDNPGRCAIF--TDNQAALQALQNPKCPSGQYILIEAVQALDELRRLKLSIQFRWIPAHV 126
Query: 311 GIAGN 315
G+ GN
Sbjct: 127 GVPGN 131
Score = 53.5 bits (127), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 67/125 (53%), Gaps = 11/125 (8%)
Query: 516 YTDGSKTAANSGCA-------YITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSR 568
YTDGS GC I+ Q + ++V+++EL + + L + +
Sbjct: 9 YTDGSGINRWCGCVCSGLQFDTISTKWIQYMGTSDVSTVYTAELRGLVLALQLVLNVHKT 68
Query: 569 TEYIFRDSIFICTDSKSSLLALKNIMSPN--HLVNNILVKINELKILNITVKFLWIPSHL 626
+ R +IF TD++++L AL+N P+ +++ + ++EL+ L ++++F WIP+H+
Sbjct: 69 GDNPGRCAIF--TDNQAALQALQNPKCPSGQYILIEAVQALDELRRLKLSIQFRWIPAHV 126
Query: 627 GIAGN 631
G+ GN
Sbjct: 127 GVPGN 131
>gi|242794494|ref|XP_002482386.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC 10500]
gi|218718974|gb|EED18394.1| hypothetical protein TSTA_121370 [Talaromyces stipitatus ATCC 10500]
Length = 1125
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 94/412 (22%), Positives = 165/412 (40%), Gaps = 75/412 (18%)
Query: 64 RIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILT------- 115
R I+G + +PI +L E P +A Y R+ P ++P + IL
Sbjct: 656 RGITGMFPKTPIGALIREAALEPATVLLDARVARYTARLLALPDTHPTAQILPVTLRHGD 715
Query: 116 -HAQLGRNINRANLP---RTVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPW 159
HAQ G P R SR D ++ +R+ AQ + RD E
Sbjct: 716 LHAQPGEQ------PLDDREWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTERC 767
Query: 160 EL-SVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYIT-- 216
EL S P I + +K+E L+ + A F ++DGS+ A +T
Sbjct: 768 ELKSFPGSIRVL-DKEEALTEANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQ 816
Query: 217 -----ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
E + + + VF +EL+ + L E +++ D+++++
Sbjct: 817 AVPGGPWEHVEVPMGHGHEVFDAELVGVATALEWAL------ERQPLGPIWVFLDAQNAI 870
Query: 272 LALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---Q 326
L++ P LV +L + V W+P H GI GN Q D+ AK + Q
Sbjct: 871 DRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQ 930
Query: 327 NAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKD 381
AP ++ ++ A ++ +SEW + N + + R R+ + W
Sbjct: 931 TAPGFEHLSLAHVRRACTEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAG 987
Query: 382 RRKEIVICR---LRIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLEC 428
+ + + R L+ GH+ + T+ + + R + P C+ C +++H+L EC
Sbjct: 988 KAPKRLASRYYQLKTGHAPIGTYLYRIGRRESPECQACKEPHETVRHVLFEC 1039
>gi|357610240|gb|EHJ66888.1| non-LTR retrotransposon CATS [Danaus plexippus]
Length = 476
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 17/135 (12%)
Query: 187 FQFKGENQNSLFCYTDGSKTAANS-GCAYITETE-----SQVFKLYNENSVFSSELLAIF 240
FQ + + N+ +TDGSK + G A+++ S+ FKL+N +VF +ELLAI
Sbjct: 182 FQSRA-HPNTTHTFTDGSKLEDGTVGAAFVSYDRGRNPVSKKFKLHNSCTVFQAELLAIL 240
Query: 241 MLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 300
C S ++ S I +DS +++LA++N + + LV I ++ + +
Sbjct: 241 K----ACEWASSNQHT---STVIYSDSSAAILAIQNRSNTHPLVAKIHSTVHHT---SGS 290
Query: 301 VKFLWIPSHLGIAGN 315
++F W+ +H+GI GN
Sbjct: 291 IEFAWVKAHVGIVGN 305
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 74/135 (54%), Gaps = 17/135 (12%)
Query: 503 FQFKGENQNSLFCYTDGSKTAANS-GCAYITETE-----SQVFKLYNENSVFSSELLAIF 556
FQ + + N+ +TDGSK + G A+++ S+ FKL+N +VF +ELLAI
Sbjct: 182 FQSRA-HPNTTHTFTDGSKLEDGTVGAAFVSYDRGRNPVSKKFKLHNSCTVFQAELLAIL 240
Query: 557 MLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNIT 616
+++S++ S I +DS +++LA++N + + LV I ++ + +
Sbjct: 241 KACE--WASSNQ-----HTSTVIYSDSSAAILAIQNRSNTHPLVAKIHSTVHH---TSGS 290
Query: 617 VKFLWIPSHLGIAGN 631
++F W+ +H+GI GN
Sbjct: 291 IEFAWVKAHVGIVGN 305
>gi|425775212|gb|EKV13494.1| hypothetical protein PDIG_38760 [Penicillium digitatum PHI26]
Length = 470
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/303 (23%), Positives = 123/303 (40%), Gaps = 54/303 (17%)
Query: 200 YTDGSKTAANSGCAYIT-----ETESQVFKLYNEN--SVFSSELLAIFMLLSHICNTRSR 252
YTDGS G A E+++ + ++ +V+++EL AI M L + R
Sbjct: 66 YTDGSGYQGGIGAAVYPAYPYRRNEARLCNMGTDDDATVYAAELRAIEMAL-EVIKERFN 124
Query: 253 PEYIFRD-----SVFICTDSKSSLLALKNIMSPNHLVN-NILVKINELKILNITVKFLWI 306
+ +RD V I TD++++L A++N P+ V +++ E I V+ W+
Sbjct: 125 DDNEWRDCLAKSGVVIFTDNQATLRAIQNPRMPSGQVYLEGCLRLLEWCNDKIQVELRWV 184
Query: 307 PSHLGIAGNVQVDELAKNSQNAPLL-----------------------------SMMTSE 337
P+H GI GN D AK + S+ +
Sbjct: 185 PAHEGIPGNEAADMYAKEAATTTETNIHDTNANANTNANTNDNTNVNTNVNHNRSIRLAA 244
Query: 338 DLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSS---FDKDRRKEI--VICRLR 392
++K++ W W RR + + S + K RK V+ +LR
Sbjct: 245 AASKSVKRESTIAWEKAWTKGGSKRTARRTRRMIEVPSKSNLTYWKGLRKATTSVLIQLR 304
Query: 393 IGHSHLTHNF-LLKREDPPLCEWCNV-QLSIQHILLEC---RKFRASRNKWHLKDDISAL 447
G L +KR D P C+ C++ S++H+LLEC ++ R+ + + +S
Sbjct: 305 TGIIGLAEYLSKIKRSDSPRCQ-CDLGNQSVKHVLLECPLLKELRSEMVEELFMEGVSTT 363
Query: 448 LGD 450
LG+
Sbjct: 364 LGE 366
>gi|321453396|gb|EFX64636.1| hypothetical protein DAPPUDRAFT_333996 [Daphnia pulex]
Length = 292
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 109/273 (39%), Gaps = 20/273 (7%)
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
GA R++P+E LY+E G L R K+L Y + P+N + L QL +
Sbjct: 2 GAKRSTPVEMLYSETGTESLSWRTKLLTRKYLLNLSHKPNNQMHKPL--VQLATTTTQWK 59
Query: 128 LPRTVKSRLEDLQIFDRISAQVIKRD-------EYIAPWELSVPEIIYLTSEKKENLSSV 180
PR+ +++ + ++ + +Y P + + K++ ++
Sbjct: 60 -PRSTPGLIKEFVFVKSLGISLVSQQLRLPSTYKYPPPSRPPDCKTSWFPLNKQQAMACR 118
Query: 181 AVKNAFFQF--KGENQNSLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSS 234
+ F S+ YTD SK+++ + CA + + L +S+F++
Sbjct: 119 HRTTSLFNTLDSSAPATSIRAYTDRSKSSSQETTTCAIFIPVLNKEHAWTLTKGSSIFTA 178
Query: 235 ELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINEL 294
++ AI+ L + P +++ S + + N +S N + I L
Sbjct: 179 KVTAIYQALKLFYDMDDCPP----EAIIYSDSSSAIIAISSNSLSENEAITATREIIASL 234
Query: 295 KILNITVKFLWIPSHLGIAGNVQVDELAKNSQN 327
K + WIPSH GI GN + D LA N
Sbjct: 235 KSSGTRTRLTWIPSHTGIEGNERTDRLAATECN 267
>gi|242765569|ref|XP_002341001.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724197|gb|EED23614.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 805
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 30/252 (11%)
Query: 200 YTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS-RPEYIFR 258
++DGS+ A E + + + VF +EL+ + L + P ++F
Sbjct: 489 WSDGSRLDTGRAGA----GEHVEVPMGHGHEVFDAELMGVATALEWALERQPLGPIWVF- 543
Query: 259 DSVFICTDSKSSLLALKNIM-SPNH-LVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
D+++++ L++ P LV +L + V W+P H GI GN
Sbjct: 544 ------LDAQNAIDRLRSTRPGPGQALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNE 597
Query: 317 QVDELAKNS---QNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKLR----- 365
Q D+ AK + Q AP ++ ++ A ++ +S+W + N + + R
Sbjct: 598 QADQAAKRAASKQTAPGFEHLSLAHVRRACTEARRAAVSKWA---QINAVQGRHRDGCVY 654
Query: 366 RIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQH 423
++ L + +R +L+ GH+ + T+ + + + + P C+ C +++H
Sbjct: 655 KMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLYRIGQRESPECQACKEPHETVRH 714
Query: 424 ILLECRKFRASR 435
+L ECR RA R
Sbjct: 715 VLFECRGRRAGR 726
>gi|242827039|ref|XP_002488756.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712148|gb|EED11575.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 473
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/353 (21%), Positives = 137/353 (38%), Gaps = 60/353 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDY--------GAVIYGSATQSSLS 53
K+ K + L TWG L +++ A ++P + Y G + A +++
Sbjct: 39 KAAKLVAGLSSTAGSTWGTPLVHLRKIYTAVLQPQIMYACSTWYIRGGRGFTGAQRAAEQ 98
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLI 113
+ ++ AL ISGA++ + ++L PP E L R+ +P +L
Sbjct: 99 AIRSIQDQALHRISGAFKRTSQQALEVCLHVPPAELTLAKLAEEACLRIMTSPLR-STLY 157
Query: 114 LTHAQLGRN-------------INRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWE 160
Q RN INR L R R+E + F + PW
Sbjct: 158 HIRGQAHRNDPYTSPLHRLETAINR-KLGRDTSQRIETIYAF------------VVPPW- 203
Query: 161 LSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETES 220
PE + ++E + ++ + ++ +TDGS G A + +
Sbjct: 204 WEPPEA-RINDTREEAIKAIEATSG-------TDTTIQFFTDGSGFDNGIGAA-VYSSIG 254
Query: 221 QVFKLY---NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI 277
Q +K + ++V++ EL I L + RS+P I TD+++ A++
Sbjct: 255 QAYKPVGSSDTHTVYAGELEGIDAALEILL--RSQPRGDNPHEATIYTDNQA---AIRAT 309
Query: 278 MSPNHLVNNILVK--INELKILNIT-----VKFLWIPSHLGIAGNVQVDELAK 323
P +++ + L +L V+ W+P H G+ GN + D+LAK
Sbjct: 310 CQPGRSSGQYIIRRIVRHLGLLRDNRSRWRVRLQWVPGHEGVPGNEKADQLAK 362
>gi|358376777|dbj|GAA93294.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 255
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 233 SSELLAIFMLLSHICNTRSRPEYIF---RDSVFICTDSKSSLLALKNIM--SPNHLVNNI 287
++EL+AIF +S + ++ + + I +DS S+L A++N S ++ I
Sbjct: 96 AAELMAIFYAISLVLQVTTKRQGRLDRGKQPATILSDSMSALQAIRNSANKSGQRIIRAI 155
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA----PLLSMMTSEDLKSAI 343
L +E+ I ++ W+P H GN + D LAK + P +++ E+ I
Sbjct: 156 LQAASEMIARGIPIRLHWVPGHCNDPGNDEPDRLAKEAVGPRKMHPFKPLLSREN--GFI 213
Query: 344 KKKLLSEWHLHW 355
+K++L+EW W
Sbjct: 214 RKRVLNEWKEEW 225
>gi|242825350|ref|XP_002488422.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712240|gb|EED11666.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 1998
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 101/454 (22%), Positives = 183/454 (40%), Gaps = 69/454 (15%)
Query: 19 GLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
GL A + R+ A V+ + +GA I+ ++ ++ + + R I+G + +PI +L
Sbjct: 1484 GLPPALVRRIQKATVQAQLLWGAEIWWQGQKTWAQRIQILINKQARGITGMFPKTPIGAL 1543
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNPSN-------PVSLILTHAQLGRNINRANLP-R 130
E P +A Y R+ P PV+L H L L R
Sbjct: 1544 IREAALEPATVLLDARVARYTARLLALPDTHHTAQILPVTL--RHGDLRAQPGEQPLDDR 1601
Query: 131 TVKSRLEDLQIFDRIS-------AQVIKRD-----EYIAPWEL-SVPEIIYLTSEKKENL 177
SR D ++ +R+ AQ + RD E +EL S P I + + +E L
Sbjct: 1602 EWASR--DNKVLNRLGQRLAKHLAQRLNRDPSGGIERTEQYELKSFPGSIRVL-DNEEAL 1658
Query: 178 SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITET-------ESQVFKLYNENS 230
+ + A F ++DGS+ A +T E + + +
Sbjct: 1659 TEANQQRAGTTF----------WSDGSRLDTGRAGAGVTLQAVPGGPWEHVEVPMGHGHE 1708
Query: 231 VFSSELLAIFMLLSHICNTRSR-PEYIFRDSVFICTDSKSSLLALKNIM-SPNH-LVNNI 287
VF +EL+ + L + P ++F D+++++ L++ P LV
Sbjct: 1709 VFDAELVGVATALEWALERQPLGPIWVF-------LDAQNAIDRLRSTRPGPGQALVLRA 1761
Query: 288 LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAI- 343
+L + V W+P H GI GN Q D+ AK + Q AP ++ ++ A
Sbjct: 1762 HKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACT 1821
Query: 344 --KKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWK---SSFDKDRRKEIVICRLRIGHS 396
++ +SEW + N + + R R+ + W + +R +L+ GH+
Sbjct: 1822 EARRAAVSEWA---QINAVQGRHRYGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHA 1878
Query: 397 HL-THNFLLKREDPPLCEWCN-VQLSIQHILLEC 428
+ T+ + + R + P C+ C +++H+L EC
Sbjct: 1879 PIGTYLYRIGRRESPECQACKEPHETVRHVLFEC 1912
>gi|156048480|ref|XP_001590207.1| hypothetical protein SS1G_08971 [Sclerotinia sclerotiorum 1980]
gi|154693368|gb|EDN93106.1| hypothetical protein SS1G_08971 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 234
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 15/183 (8%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTHAQLGR-------NINRANLPRTVKSRLEDL--Q 140
+ Y R +K +PS+P++L+ T + R L T ++++L +
Sbjct: 62 LNAGIKQYAFRLLKISPSHPINLVTTKLATEKENQDVIATPQRKQLKPTQLEKIKNLIQK 121
Query: 141 IFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCY 200
FD + + I Y PW+ VP + + K+ + + N F+++ +N + Y
Sbjct: 122 DFDPFTLEGI-HHFYFPPWKKEVPYKVNIRKLGKK--EAAMIHNLAFKYRC--KNIITIY 176
Query: 201 TDG 203
TD
Sbjct: 177 TDA 179
>gi|116205195|ref|XP_001228408.1| hypothetical protein CHGG_10481 [Chaetomium globosum CBS 148.51]
gi|88176609|gb|EAQ84077.1| hypothetical protein CHGG_10481 [Chaetomium globosum CBS 148.51]
Length = 1098
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 170/445 (38%), Gaps = 62/445 (13%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 613 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 672
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLED 138
AE P+ R A+ + P TH + + RT +
Sbjct: 673 EAEASIYPVRERHAQAAASLWINIHTLPG-------THPLAMKKV------RTTVRFVSP 719
Query: 139 LQIFDRISAQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAV 182
LQ R++ V + R E I PW + + K + +S +V
Sbjct: 720 LQKIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSV 779
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
K G +++LF T S+T N V E + +++EL AI M
Sbjct: 780 KKGIVGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMA 828
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI--- 299
L + P I + + T ++S+L A+ + +I+ +I +L L+
Sbjct: 829 LEKL------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRG 880
Query: 300 -TVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNN 358
+V FLWIP+ + A A+ + KS + +
Sbjct: 881 NSVNFLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLP 940
Query: 359 VINNKLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPL 411
V K + + L K + +DK +R+E V+ +LR G + L N L R + L
Sbjct: 941 VSVGKFSKAMDAALPGKHTRHLYDKLKRREACVLAQLRTGMARL--NGFLSRIGAVESDL 998
Query: 412 CEWCNVQLSIQHILLECRKFRASRN 436
C + S++H L C ++ A R
Sbjct: 999 CACGQARESVEHFLFRCVRWTALRE 1023
>gi|307200768|gb|EFN80823.1| hypothetical protein EAI_12282 [Harpegnathos saltator]
Length = 134
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K++ INILK + +WG A +L ++ +R ++D+G Y + L+ +
Sbjct: 27 KTIPRINILKSIMGISWGAHPAIMLSVYKNLIRSVLDWGCQAYLDLQERKAQTLDRLQFA 86
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANY 98
A II G +T+P + +G+ PL RR L Y
Sbjct: 87 AFNIILGLMKTTPTNVILDLSGERPLPVRRSFLAKKY 123
>gi|116214413|ref|XP_001230217.1| hypothetical protein CHGG_11047 [Chaetomium globosum CBS 148.51]
gi|88175402|gb|EAQ82871.1| hypothetical protein CHGG_11047 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 103/445 (23%), Positives = 170/445 (38%), Gaps = 62/445 (13%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 1206 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 1265
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLED 138
AE P+ R A+ + P TH + + RT +
Sbjct: 1266 EAEASIYPVRERHAQAAASLWINIHTLPG-------THPLAMKKV------RTTVRFVSP 1312
Query: 139 LQIFDRISAQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAV 182
LQ R++ V + R E I PW + + K + +S +V
Sbjct: 1313 LQKIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSV 1372
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
K G +++LF T S+T N V E + +++EL AI M
Sbjct: 1373 KKGIVGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMA 1421
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI--- 299
L + P I + + T ++S+L A+ + +I+ +I +L L+
Sbjct: 1422 LEKL------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRG 1473
Query: 300 -TVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNN 358
+V FLWIP+ + A A+ + KS + +
Sbjct: 1474 NSVNFLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLP 1533
Query: 359 VINNKLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPL 411
V K + + L K + +DK +R+E V+ +LR G + L N L R + L
Sbjct: 1534 VSVGKFSKAMDAALPGKHTRHLYDKLKRREACVLAQLRTGMARL--NGFLSRIGAVESDL 1591
Query: 412 CEWCNVQLSIQHILLECRKFRASRN 436
C + S++H L C ++ A R
Sbjct: 1592 CACGQARESVEHFLFRCVRWTALRE 1616
>gi|156059000|ref|XP_001595423.1| hypothetical protein SS1G_03512 [Sclerotinia sclerotiorum 1980]
gi|154701299|gb|EDO01038.1| hypothetical protein SS1G_03512 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 166
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 31 AFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETR 90
A V I DYG++++ L ++ + ALR I G ++TSPI+ + E P E R
Sbjct: 2 ACVTSIADYGSILWWKGQNQFKKILQSLQNLALRKILGVFKTSPIKPMEIEAALCPPEVR 61
Query: 91 RKILLANYGTR-VKCNPSNPVSLILTH-AQLGRNINRANLPRTVKSRLEDLQI------- 141
+ Y R +K +PS+PV+L+ T A N + P+ + +L+ Q+
Sbjct: 62 LNAGIKQYAFRLLKISPSHPVNLVATKLATEKENQDVVATPQ--RKQLKPTQLEKIKNSI 119
Query: 142 ---FDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSV 180
FD ++ + I Y PW+ VP + ++ KE + +
Sbjct: 120 QKDFDPLTLEGI-HHFYFPPWKKEVPYKVNISKLGKEEAAMI 160
>gi|242765602|ref|XP_002341008.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218724204|gb|EED23621.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 592
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 100/227 (44%), Gaps = 26/227 (11%)
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRS-RPEYIFRDSVFICTDSKSSLLALKNIM-SPNH 282
+ + + VF +EL+ + L + P ++F D+++++ L++ P
Sbjct: 297 MGHGHEVFDAELMGVATALEWALERQPLGPIWVF-------LDAQNAIDRLRSTRPGPGQ 349
Query: 283 -LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSED 338
LV +L + V W+P H GI GN Q D+ AK + Q AP ++
Sbjct: 350 ALVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAH 409
Query: 339 LKSA---IKKKLLSEWHLHWKNNVINNKLR-----RIKEDTLLWKSSFDKDRRKEIVICR 390
++ A ++ +S+W + N + + R ++ L + +R +
Sbjct: 410 VRRACTEARRAAVSKWA---QINAVQGRHRDGCVYKMPRGWNLDPVAGKAPKRLASRYYQ 466
Query: 391 LRIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLECRKFRASR 435
L+ GH+ + T+ + + + + P C+ C +++H+L ECR RA R
Sbjct: 467 LKTGHAPIGTYLYRIGQRESPECQACKEPHETVRHVLFECRGRRAGR 513
>gi|353247791|emb|CCA77176.1| hypothetical protein PIIN_11158 [Piriformospora indica DSM 11827]
Length = 321
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 106/251 (42%), Gaps = 46/251 (18%)
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVN 285
E++V EL+ I + + ++ E I + I D+++++ ++N+ + H+++
Sbjct: 30 EHTVHKGELVGIALGVQ-----LAKMERIIIPRIKISLDNQAAIQGMENVSAKAGQHIIH 84
Query: 286 NILVKINELKI-------------------LNITVKFLWIPSHLGIAGNVQVDELAK--- 323
I I++L+ + + W+P H GI GN DE AK
Sbjct: 85 KIHRAIDKLRNDQKRRQELVEASDDETRINQSTQITLTWVPGHEGIKGNKAADEEAKKAI 144
Query: 324 --NSQNAPLLSMMTSEDLK---SAIKKKL----LSEWHLHWKNNVINNKLRRIKEDTLLW 374
S A L T + L SA++++L H WK++ N+ R I E
Sbjct: 145 TDGSSTAATLPPWTKDTLPQNISALRQELKLAARKSAHDKWKSSAWYNRTRPIDETMPSN 204
Query: 375 K--SSFDKDRRKE-IVICRLRIGHSHLT-HNFLLKREDPPLCEWC---NVQLSIQHILLE 427
K DK R E + +LR GH L H + R D P C C N + +I H+L
Sbjct: 205 KYLQITDKLMRAEAAALIQLRTGHIRLNKHLNRINRADAPWCPHCGEGNAE-NITHLLHI 263
Query: 428 CRKFRASRNKW 438
C + A R +W
Sbjct: 264 CPAYNAVRAEW 274
>gi|154270051|ref|XP_001535895.1| hypothetical protein HCAG_09198 [Ajellomyces capsulatus NAm1]
gi|150412984|gb|EDN08368.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 841
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 671 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 730
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 731 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 778
>gi|154278826|ref|XP_001540226.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412169|gb|EDN07556.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1356
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1029 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1088
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1089 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1136
>gi|154277106|ref|XP_001539398.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414471|gb|EDN09836.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1315
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 988 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1047
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1048 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1095
>gi|154277386|ref|XP_001539534.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413119|gb|EDN08502.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1390
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1063 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1122
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1123 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1170
>gi|2735953|gb|AAB94030.1| reverse transcriptase [Aphonopelma sp. WDB-1998]
Length = 743
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 24/170 (14%)
Query: 200 YTDGSKTAANSGCAYITETESQV-----FKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
YTDGSK+ + +G A++ ++ +K+ N+ +E+LAI+ L +
Sbjct: 490 YTDGSKSESGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKAL----------Q 539
Query: 255 YIFRDSVFI--C---TDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 309
++ D V I C TDS+SSL AL N LV +L + V+F W H
Sbjct: 540 WLLADGVGIKSCAVITDSQSSLQALANPSCDWLLVMRAKAAYRQLLRNGVAVRFFWTKGH 599
Query: 310 LGIAGNVQVDELAKNSQNAPLLSM---MTSEDLKSAIKKKLLSEWHLHWK 356
GN D A+ + +A LS+ + KS K W W+
Sbjct: 600 ATCEGNKIADSAAREA-SASGLSIEVPLPHSYFKSVTAKMAYRLWEQRWR 648
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 516 YTDGSKTAANSGCAYITETESQV-----FKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
YTDGSK+ + +G A++ ++ +K+ N+ +E+LAI+ L + + +
Sbjct: 490 YTDGSKSESGTGAAFVVFRNGELWMSRSYKMTASNTSSQAEILAIWKALQWLLA-----D 544
Query: 571 YIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 630
+ S + TDS+SSL AL N LV +L + V+F W H G
Sbjct: 545 GVGIKSCAVITDSQSSLQALANPSCDWLLVMRAKAAYRQLLRNGVAVRFFWTKGHATCEG 604
Query: 631 N 631
N
Sbjct: 605 N 605
>gi|242807798|ref|XP_002485031.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218715656|gb|EED15078.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 361
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM-SPNH- 282
+ + + VF +EL+ + L + +++ D+++++ L++ P
Sbjct: 66 MGHGHEVFDAELVGVATALEWALERQPL------GPIWVFLDAQNAIDRLRSTRPGPGQA 119
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDL 339
LV +L + V W+P H GI GN Q D+ AK + Q AP ++ +
Sbjct: 120 LVLRAHKAAEKLALRGQPVTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHV 179
Query: 340 KSA---IKKKLLSEWHLHWKNNVINNKLR--RIKEDTLLWKSSFDKDRRKEIVICR---L 391
+ A ++ +SEW + N + + R R+ + W + + + R L
Sbjct: 180 RRACTEARRAAVSEWA---QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQL 236
Query: 392 RIGHSHL-THNFLLKREDPPLCEWC-NVQLSIQHILLEC 428
+ GH+ + T+ + + R + P C+ C +++H+L EC
Sbjct: 237 KTGHAPIGTYLYRIGRRESPECQACKEPHETVRHVLFEC 275
>gi|154274436|ref|XP_001538069.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414509|gb|EDN09871.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1553
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1313 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1372
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1373 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1420
>gi|154270790|ref|XP_001536249.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409823|gb|EDN05263.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1307
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1149 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1208
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1209 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1256
>gi|154284902|ref|XP_001543246.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150406887|gb|EDN02428.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1390
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1063 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1122
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1123 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1170
>gi|154272365|ref|XP_001537035.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409022|gb|EDN04478.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1331
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1004 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1063
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1064 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1111
>gi|443706559|gb|ELU02547.1| hypothetical protein CAPTEDRAFT_222498 [Capitella teleta]
Length = 194
Score = 52.4 bits (124), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/47 (53%), Positives = 30/47 (63%)
Query: 361 NNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRE 407
+NKL I+ WK DRR EIV+ R RIG SHLTH +LL+RE
Sbjct: 87 DNKLHTIQPVISEWKQGPQIDRRGEIVLARARIGQSHLTHGYLLRRE 133
>gi|71148676|gb|AAZ28934.1| polyprotein [Phanerochaete chrysosporium RP-78]
Length = 1121
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 97/504 (19%), Positives = 188/504 (37%), Gaps = 73/504 (14%)
Query: 1 IKSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSL----SKLN 56
+K ++ L++L N GL+ RL+ A V P++ YGA ++ T + L
Sbjct: 379 VKGCSSVAALRMLGNSNRGLTPKDKRRLYIANVIPLLTYGAQLWWHPTWKGIKWAQKALQ 438
Query: 57 TVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKC-NPSNPVSLILT 115
+ A R I+GA+RT+P+ +L G P+ L+ RV+ + ++P+ L
Sbjct: 439 AAQYRAARWITGAFRTTPVGALEMAAGLLPINRTINKLMKRAALRVRTLHDAHPIKAHLP 498
Query: 116 --HAQLGRNINRANLPRTVKSR-------------LEDLQIFDRISAQVIKRDEYIAPWE 160
NI R K+R + FD ++ ++ D +
Sbjct: 499 TLFEPSALNITAPAPYRVTKTRDAVTPITHIHKYSTRATEEFDSVATELRPGDHLLDAMS 558
Query: 161 LSVP-EIIYLTSEKKENLSSVAVKNAFFQ----FKGENQNSLFCYTDGSKTAA------- 208
+ + Y K + S N + +++ + ++DGS A
Sbjct: 559 QRIEVDPGYCAPAKADRDSFSTWVNTYLDPLISMVRQDKTANVVFSDGSSLKARTAKRPY 618
Query: 209 --NSGCAYI---------TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
+G AY+ +T S+ + S + +E++A++M + C T + +
Sbjct: 619 RVKTGAAYVLLTTDDHMNRQTRSRAIGC-GQVSPYDAEMMALYMGILAACRTNT----LQ 673
Query: 258 RDSVFICTDSKSSLLA-LKNIMSPNHLVNNILVKINELKIL----NITVKFLWIPSHLGI 312
++ + D+K+++ LK S ++L K L T W P H+GI
Sbjct: 674 AKTIHVFADNKAAITGILKPTASGPSQRLSVLTCQAVRKWLEDDAERTFHTHWCPGHVGI 733
Query: 313 AGNVQVD-ELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNV---------INN 362
N D E ++ P + M+ + + L W +++ +
Sbjct: 734 DLNETADIEAKAAAKEYPQPAEMSLSMARQITTARELELWRKQIRSDTKYRGAGMFGGDR 793
Query: 363 KLRRIKEDTLLWKSSFDKDRRKEIV-ICRLRIGHSHL-THNFLLKREDPPLCEWC----- 415
R+I + W + D +E+ + R H + + K++ P C +C
Sbjct: 794 GARKINTKSTSWFMARSGDYNREMAQLTRTMTNHMPIGAYRERFKKDGPKYCWYCKHESD 853
Query: 416 -NVQLSIQHILLECRKFRASRNKW 438
+ + +HIL C + R W
Sbjct: 854 RGIAETREHILYMCNGW--GRGYW 875
>gi|162568710|gb|ABY19378.1| reverse transcriptase [Paracoccidioides brasiliensis]
Length = 553
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/357 (21%), Positives = 136/357 (38%), Gaps = 60/357 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGA-VIYGSATQSS--------- 51
K+ + N ++ L+N G L + A V ++ YGA + AT+
Sbjct: 4 KARQVSNGIRALSNTARGAPVQLLRQSIQACVLSVLCYGAEAWWPGATRMEKGKEISNRM 63
Query: 52 ---LSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK-CNPS 107
+ KL+ ALR Y+T+PI +L+ E P++ A + R+K +
Sbjct: 64 DCLVRKLDLALRDALRGALPVYKTTPISALHRELEIMPMKETLDNRRAVFAVRIKKLDKR 123
Query: 108 NPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVP--- 164
+P+ + R+N T K L + + D + P + P
Sbjct: 124 HPL------------VRRSNKVATTKPYTTRLSRASSHAGGIEAYDPLLTPPWMRFPRKE 171
Query: 165 --EIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSK-----TAANSGCAYITE 217
+I Y+ KE A ++ + N L +TDGS+ A +G A
Sbjct: 172 DLQIGYVAGRTKEQ----AAQDFKSWLQQRNPLDLVVFTDGSQIEHPQRATGAGWAICWG 227
Query: 218 TESQVFKLYN----ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLA 273
+E ++ N + VF +E +A L + P+ F +V+IC D+ A
Sbjct: 228 SEHRLISTGNLPMDKAEVFDAEAMAALQGLKEATTS---PQAKFASNVYICLDNLEVARA 284
Query: 274 LKNIMSPNHLVNNILVKI----------NELKILNIT-VKFLWIPSHLGIAGNVQVD 319
L ++ PN + + + L + + V W+P H G+AGN + D
Sbjct: 285 LGSV--PNTSSQQVFAQFLKAIKAWQSRDRLPLATQSRVVIRWVPGHAGVAGNEKAD 339
>gi|154277306|ref|XP_001539494.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413079|gb|EDN08462.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1321
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 994 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKPGLALKLTT 1053
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1054 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1101
>gi|427791993|gb|JAA61448.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1031
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 164 PEI-IYLTSEKKENLSSVAVKNAF-FQFKGENQNSLFCYTDGS---KTAANSGCAYITET 218
PE+ + L K + A++ A + + + + L +TDGS A + C +
Sbjct: 872 PEVHLSLDGATKRRTPAAALQQAATCKLQEQLRGCLQVFTDGSVMPDGTAAAACVIPSWA 931
Query: 219 ESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIM 278
S+ +L S ++EL + + + E + + V + DS+++L L N
Sbjct: 932 TSRQCQLPFPASSTAAELAGLHLAADLLA------ENLPTEPVAVLCDSRAALQTLANHR 985
Query: 279 SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
+ + K L +V F W+PSH+GIAGN + D LAK
Sbjct: 986 RAGLTGSLLASKFRALTASGASVSFHWLPSHVGIAGNEEADTLAK 1030
>gi|154270414|ref|XP_001536062.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409989|gb|EDN05377.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 954
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 696 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 755
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 756 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 803
>gi|328854967|gb|EGG04096.1| hypothetical protein MELLADRAFT_65107 [Melampsora larici-populina
98AG31]
Length = 286
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)
Query: 300 TVKFLWIPSHLGIAGNVQVDELAKNSQNAPLL--SMMTSEDLKSAIKKKLLSEWHLHWKN 357
T+ +W PS+ G+ G V D AK + P + + K IK KL+ ++ N
Sbjct: 32 TISLIWCPSNSGLPGTVLADAAAKAATELPQIIDCPPCTTTFKKKIKDKLVDAANIAPTN 91
Query: 358 NVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLT-HNFLLKREDPPLCEWCN 416
+ ++ + + +K+ I +LR GH L + F + D P C C
Sbjct: 92 QALT-RMMGVFDPGGTFKALCKLSCPAATFITQLRAGHCPLNDYLFRFTKADTPNCALCT 150
Query: 417 VQLSIQHILLECRKF-----------RASRNKWHLKD 442
+ S++H LL CRKF RA++ +H KD
Sbjct: 151 QRESVEHFLLTCRKFAGIRRDLSKAARANKTPFHQKD 187
>gi|154282963|ref|XP_001542277.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410457|gb|EDN05845.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 956
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 629 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 688
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 689 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 736
>gi|154275426|ref|XP_001538564.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415004|gb|EDN10366.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 965
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 638 VRALSQTTQSTWGLPLQQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 697
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 698 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 745
>gi|393228467|gb|EJD36112.1| hypothetical protein AURDEDRAFT_43289, partial [Auricularia
delicata TFB-10046 SS5]
Length = 119
Score = 52.0 bits (123), Expect = 9e-04, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 25/134 (18%)
Query: 305 WIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKL 364
W+P H IAGN D A + + +A + +LL N L
Sbjct: 8 WVPGHDNIAGNELADVHANRAADGD----------TTATRIRLL------------NTAL 45
Query: 365 RRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDPP--LCEWCNVQLSIQ 422
R T + D RR ++ +LR GH L H FL + + P LCE C V ++
Sbjct: 46 PRSAATTKAAQKRKDLPRRSASLLTQLRTGHVGL-HGFLARIKAVPSALCEVCRVPETVP 104
Query: 423 HILLECRKFRASRN 436
H LL+C +FR R+
Sbjct: 105 HFLLQCPRFRLQRH 118
>gi|294951625|ref|XP_002787074.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239901664|gb|EER18870.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 370
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 41/252 (16%)
Query: 200 YTDGSKTAANSGCAYITETESQV-----FKLYNENSVFSSELLAIFMLLSHICNTRSRP- 253
YTDGSK ++G A++ E +V FKL ++ EL AI L + + R
Sbjct: 81 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGI 140
Query: 254 EYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
E++ + TDS++S+ ++ + + I I L L++ V+ W P H G+
Sbjct: 141 EWL------LFTDSQASIRTIRGREATER--SAIARDIAHLS-LHVKVQLNWCPGHEGVQ 191
Query: 314 GNVQVDELAKNSQNA--PL---LSMM-----TSEDLKSAIKKKLLSEWHLHWKNNVINNK 363
N VD+LA + PL ++M LK+ ++K S W K +
Sbjct: 192 WNEAVDQLANTGRKQLFPLDRGAALMVPPSFVKHQLKTQMEKDTRSWWLE--KRATLGTS 249
Query: 364 LRRIKEDTLLWKSS----FDKDRRKEIVICRLRIGHS---HLTHNFLLKREDPPLCEWCN 416
+R LW S F K + + L +GH+ H H L+ + P C +
Sbjct: 250 VR-----DFLWGFSHARRFLKAGKSSPELSALILGHAPTPHHRHTMGLRTD--PSCPCGH 302
Query: 417 VQLSIQHILLEC 428
++HIL +C
Sbjct: 303 ADGDVKHILRDC 314
>gi|154282395|ref|XP_001541993.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410173|gb|EDN05561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 608
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 358 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 417
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 418 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 465
>gi|4586458|dbj|BAA76384.1| reverse transcriptase [Magnaporthe grisea]
Length = 288
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 103/275 (37%), Gaps = 47/275 (17%)
Query: 200 YTDGSKTAANSGCAYIT----------ETESQVFKLYNENSVFSSELLAIFMLLSHICNT 249
YTDGS+ N+ C I E + + E+ VF +E AI L
Sbjct: 5 YTDGSEKHENN-CVQIGYGWAAFRAGLEFAAAAASITPESHVFDAE--AIGALKGLQAAA 61
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH----LVNNILVKINELKILNITVKFLW 305
+++P ++IC DS S + LK + L + LV + L+ V+ W
Sbjct: 62 KAQPGA----RIWICVDSTSVIWGLKGDAPRSSQWAFLEFHDLVDL--LRKQGTEVRVRW 115
Query: 306 IPSHLGIAGNVQVDELAKNSQNAP----LLSMMTSEDLKSAIKKKLLSEWHLHWKNNVIN 361
P H GI GN + DELAK P + T+ + + +LS W +
Sbjct: 116 CPGHQGIPGNDRADELAKAGSAGPPDPDPRAQQTTYSGAGTVLRAILSNIEKDWWRKELC 175
Query: 362 NKLRRIKEDTLLWKSSFDKDRRKEIVICRL-----------RIGHSHLT--HNFLLKRED 408
+ +E WK F RKE RL R GH H+ ++
Sbjct: 176 ERSPAYRE----WK--FQYTPRKEPEELRLPRPLLGHYLAMRTGHGDFKAYHDRFNHQDA 229
Query: 409 PPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDD 443
C WC + S +H + CR RA W D+
Sbjct: 230 NTSCAWCWKRTSPEHP-VHCRFSRAVWRNWPWLDN 263
>gi|116196994|ref|XP_001224309.1| hypothetical protein CHGG_05095 [Chaetomium globosum CBS 148.51]
gi|88181008|gb|EAQ88476.1| hypothetical protein CHGG_05095 [Chaetomium globosum CBS 148.51]
Length = 1740
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 103/441 (23%), Positives = 175/441 (39%), Gaps = 54/441 (12%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 1270 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 1329
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
AE P+ R A+ + P ++P+++ RN R P +R+
Sbjct: 1330 EAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKV-----RNTVRFVSPLQKIARVA 1384
Query: 138 DLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL----------SSVAVKNAF 186
+ DR+ + I+ EY + PW + + K + +S +VK
Sbjct: 1385 EGVRVDRM--ETIQ--EYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGI 1440
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
G ++ LF T S+T N V E + +++EL AI M L +
Sbjct: 1441 VGMGGLARDILFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL 1489
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVK 302
P I + + T ++S+L A+ + +I+ +I +L L+ +V
Sbjct: 1490 ------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVN 1541
Query: 303 FLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINN 362
FLWIP+ + A A+ + KS + + V
Sbjct: 1542 FLWIPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVG 1601
Query: 363 KLRRIKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPLCEWC 415
K + + L K + +DK +R+E V+ +LR G + L N L R + LC
Sbjct: 1602 KFSKAMDAALPGKHTRHLYDKLKRREACVLAQLRTGMARL--NGFLSRIGAVESDLCACG 1659
Query: 416 NVQLSIQHILLECRKFRASRN 436
+ S++H L C ++ A R
Sbjct: 1660 QARESVEHFLFRCVRWTALRE 1680
>gi|154276432|ref|XP_001539061.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414134|gb|EDN09499.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 484
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 193 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 252
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 253 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 300
>gi|321461852|gb|EFX72880.1| hypothetical protein DAPPUDRAFT_325810 [Daphnia pulex]
Length = 268
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 195 NSLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L +
Sbjct: 92 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMD 151
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P +++ S + N +S N + I I LK + WIPSH
Sbjct: 152 DCPP----EAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHT 207
Query: 311 GIAGNVQVDELAKNSQN 327
GI GN + D LA N
Sbjct: 208 GIEGNERTDRLAATECN 224
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 511 NSLFCYTDGSKTAAN--SGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L Y
Sbjct: 92 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDM- 150
Query: 567 SRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 626
+ ++I S + N +S N + I I LK + WIPSH
Sbjct: 151 ---DDCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHT 207
Query: 627 GIAGN 631
GI GN
Sbjct: 208 GIEGN 212
>gi|321456607|gb|EFX67710.1| hypothetical protein DAPPUDRAFT_261174 [Daphnia pulex]
Length = 268
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Query: 195 NSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L +
Sbjct: 92 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDMD 151
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P +++ S + N +S N + I I LK + WIPSH
Sbjct: 152 DCPP----EAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHT 207
Query: 311 GIAGNVQVDELAKNSQN 327
GI GN + D LA N
Sbjct: 208 GIEGNERTDRLAATECN 224
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 511 NSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L Y
Sbjct: 92 TSIRAYTDGSKSSSPETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFYDM- 150
Query: 567 SRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 626
+ ++I S + N +S N + I I LK + WIPSH
Sbjct: 151 ---DDCPPEAIIYSDSSSAITAISSNSLSENEAITAIREIIASLKSSGTRTRLTWIPSHT 207
Query: 627 GIAGN 631
GI GN
Sbjct: 208 GIEGN 212
>gi|154287168|ref|XP_001544379.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408020|gb|EDN03561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 520
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 193 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKPGLALKLTT 252
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 253 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 300
>gi|154287938|ref|XP_001544764.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408405|gb|EDN03946.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 520
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 193 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 252
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 253 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 300
>gi|307176190|gb|EFN65847.1| hypothetical protein EAG_02388 [Camponotus floridanus]
Length = 220
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 27/225 (12%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN-IMSPNHLVNNIL 288
S F++E AI L + + S+ EY ++V I +D + L ALKN +S H N +
Sbjct: 1 STFTAEAFAIRTALEILQGSYSKKEYN-HENVIIFSDCQGVLKALKNNKLSVYH--NRYI 57
Query: 289 VKINEL--KILN---ITVKFLWIPSHLGIAGNVQVDELAKN--SQNAPLLSMMTSEDLKS 341
++ EL KI+ I + +WIPSH G GN D LAK S+ A + +DL S
Sbjct: 58 MEARELYWKIVTQFRIKIYLIWIPSHKGFIGNEIADILAKQGASERADDSIHVPFQDLTS 117
Query: 342 AIK--------KKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRI 393
K ++L++ + + +N +R ++ + W DR +I R+R
Sbjct: 118 VFKNEEWNDTQDRILTQARVK-GQHYFSNYYKRSRKKS--WFYGIQADRYFCTLINRIRA 174
Query: 394 GHSHLTHNFLLKRED---PPLCEWCNVQLSIQHILLECRKFRASR 435
H +L N L R++ CE I H++ C ++ R
Sbjct: 175 NHYNL--NASLARKEYIASAQCECGYDYEDIDHVVWSCDRYSRER 217
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 9/92 (9%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKN-IMSPNHLVNNIL 604
S F++E AI L + + S+ EY +++ I +D + L ALKN +S H N +
Sbjct: 1 STFTAEAFAIRTALEILQGSYSKKEYN-HENVIIFSDCQGVLKALKNNKLSVYH--NRYI 57
Query: 605 VKINEL--KILN---ITVKFLWIPSHLGIAGN 631
++ EL KI+ I + +WIPSH G GN
Sbjct: 58 MEARELYWKIVTQFRIKIYLIWIPSHKGFIGN 89
>gi|154269896|ref|XP_001535841.1| hypothetical protein HCAG_09226 [Ajellomyces capsulatus NAm1]
gi|150415667|gb|EDN11017.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 449
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 193 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 252
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 253 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 300
>gi|405958415|gb|EKC24545.1| Putative RNA-directed DNA polymerase from transposon BS
[Crassostrea gigas]
Length = 259
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 22 RACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAE 81
R L +L+ +F+RP ++Y ++++ + KL V A RI++G P E+LY E
Sbjct: 120 REHLSKLYISFIRPTLEYASIVWDGCSVHDADKLEKVQLCAARIVTGLPIFVPREALYLE 179
Query: 82 NGQPPLETRRKI 93
G L+TRR I
Sbjct: 180 TGWEILQTRRYI 191
>gi|212541620|ref|XP_002150965.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210068264|gb|EEA22356.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 1215
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 109/461 (23%), Positives = 170/461 (36%), Gaps = 78/461 (16%)
Query: 12 VLNNKTWGLSRACLLR------------LFYAFVRPIMDYGAVIYGSATQSSLSK-LNTV 58
+ N T GL+ A LR LF A V P DY + ++ A ++ LN +
Sbjct: 464 IANAATKGLAAAMALRRLKIISPRTARQLFRATVAPAADYASSVWMHACGVKGTQYLNRM 523
Query: 59 YHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLI--LT 115
I++GA+RT AE P +R A ++ P SNP+ + +T
Sbjct: 524 QKHRAIIVTGAFRTVATAVAEAEAAIQPFYSRHMDKAAKLWIDIQTLPKSNPLVKLRTIT 583
Query: 116 HAQLGRNINR--ANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEK 173
+ + R +L TV+ R+E +Q F ++PW + I EK
Sbjct: 584 TRRFRSPLQRIAQSLEATVRERIETIQAF------------LVSPWTYRIQTICEKDREK 631
Query: 174 KENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAA---NSGCAYITET-------ESQVF 223
L++ AV + T S A GC T+T S
Sbjct: 632 AIELTNQAV-------------GILIATSTSARAGLVGMGGCMIDTQTNGNNNTMPSYSI 678
Query: 224 KLYN--ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN 281
L N E + +++EL AI L HI P + I + ++S+L A I P
Sbjct: 679 TLGNRTEQNPYTAELGAIAAALEHI------PVGTCHRWITILSSNRSALAA---ISQPR 729
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKS 341
++ E I I W+P+H + ++ A+ S + KS
Sbjct: 730 QQSGQKTLQRQENAINAI-----WVPAHTDMDVQIRAKSEARKSTETECQPEIQPFQAKS 784
Query: 342 AIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWK---SSFDKDRRKEI-VICRLRIGHSH 397
K L++ W K + + L K S +D+ RKE + +LR G +
Sbjct: 785 TAVKLALAKQRQEWALPASIGKYSKAIDIALPGKHTRSLYDRLNRKEAETLAQLRTGMTR 844
Query: 398 LTHNFLLKR---EDPPLCEWCNVQLSIQHILLECRKFRASR 435
L N L R D LC +++H L C K+ R
Sbjct: 845 L--NSYLNRIGAVDSDLCACGQASETVEHFLFRCTKWTTKR 883
>gi|405953536|gb|EKC21180.1| Putative RNA-directed DNA polymerase from transposon BS
[Crassostrea gigas]
Length = 390
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 22 RACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAE 81
R L +L+ +F+RP ++Y ++++ + KL V A RI++G P E+LY E
Sbjct: 120 REHLSKLYISFIRPTLEYASIVWDGCSVHDADKLEKVQLCAARIVTGLPIFVPREALYLE 179
Query: 82 NGQPPLETRRKI 93
G L+TRR I
Sbjct: 180 TGWEILQTRRYI 191
>gi|154269581|ref|XP_001535756.1| hypothetical protein HCAG_09327 [Ajellomyces capsulatus NAm1]
gi|150411173|gb|EDN06561.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 341
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 160 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLAT 219
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 220 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 267
>gi|49887134|gb|AAT68811.1| pol protein [Simian immunodeficiency virus]
Length = 1040
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + YIT+ Q K + +EL A+ M L S PE
Sbjct: 635 YVDGAANRNSKEGQAGYITDRGKQTLKRLENTTNQKAELEAVLMALQD-----SGPE--- 686
Query: 258 RDSVFICTDSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L N S + +V I+ K E + + IT W+P+H GI GN
Sbjct: 687 ---VNIVTDSQYALGILMNCPTSSEHPVVEQIMQKAMEKEKIYIT----WVPAHKGIGGN 739
Query: 316 VQVDEL 321
+VD+L
Sbjct: 740 QEVDQL 745
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + + YIT+ Q K + +EL A+ M L S E
Sbjct: 635 YVDGAANRNSKEGQAGYITDRGKQTLKRLENTTNQKAELEAVLMALQ-----DSGPE--- 686
Query: 574 RDSIFICTDSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L L N S + +V I+ K E + + IT W+P+H GI GN
Sbjct: 687 ---VNIVTDSQYALGILMNCPTSSEHPVVEQIMQKAMEKEKIYIT----WVPAHKGIGGN 739
Query: 632 VQV 634
+V
Sbjct: 740 QEV 742
>gi|242775805|ref|XP_002478713.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218722332|gb|EED21750.1| endonuclease/reverse transcriptase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1959
Score = 51.2 bits (121), Expect = 0.002, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS---QNAPLLSMMTSEDLKSAI---KKKLLSEWHLH 354
V W+P H GI GN Q D+ AK + Q AP ++ ++ A ++ +SEW
Sbjct: 1736 VTIQWVPGHSGIEGNEQADQAAKRAASKQTAPGFEHLSLAHVRRACTEARRAAVSEWA-- 1793
Query: 355 WKNNVINNKLR--RIKEDTLLWK---SSFDKDRRKEIVICRLRIGHSHL-THNFLLKRED 408
+ N + + R R+ + W + +R +L+ GH+ + T+ + + + +
Sbjct: 1794 -QINAVQGRHRDGRVYKMPRGWNLDPVAGKAPKRLASRYYQLKTGHAPIGTYLYRIGQRE 1852
Query: 409 PPLCEWCN-VQLSIQHILLECRKFRASR 435
P C+ C +++H+L ECR RA R
Sbjct: 1853 SPECQACKEPHETVRHVLFECRGRRAGR 1880
>gi|400593039|gb|EJP61047.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 362
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 123/280 (43%), Gaps = 32/280 (11%)
Query: 175 ENLSSVAVKNA---FFQFKGENQ---NSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+NL S+ A FF K N N + + + A YI + E +
Sbjct: 53 QNLWSLGASYASLWFFCGKKRNDKHGNGIDGHVGAAAILAQDNRDYIRKVE--YLGTSDM 110
Query: 229 NSVFSSELLAIFM---LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN--HL 283
+V+++EL + + LL+ +RP R ++F TD+++++ A++N P+ ++
Sbjct: 111 TTVYAAELKGLVLALRLLAEASQAGARPG---RCAIF--TDNQAAIQAMQNPKHPSAQYI 165
Query: 284 VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAI 343
+ + ++++++ V+ WIP+H A + S+ L ++M K+ I
Sbjct: 166 LAEAIQELDKIRTEGWDVQLRWIPAH---AAKDAARKHGDPSEPTSLRTLMAP--TKTII 220
Query: 344 KKKLLSEWHLHWKNNVINNKLRRI-----KEDTLLWKSSFDKDRRKEIVICRLRIGHSHL 398
K + +EW W+ +L R+ K L + ++ R VI ++R G L
Sbjct: 221 HKTMRAEWAASWEMAKHGRELFRLGVKPGKTALDLCRGTY---RAVSSVITQMRKGKIGL 277
Query: 399 -THNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
+ + + D C+ +++H+LLECR + R +
Sbjct: 278 GAYLHAINKADTDKCQCGYGPQTVRHVLLECRNWTDERQQ 317
>gi|321452689|gb|EFX64018.1| hypothetical protein DAPPUDRAFT_334682 [Daphnia pulex]
Length = 197
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 195 NSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L
Sbjct: 21 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLF---- 76
Query: 251 SRPEYIFRD---SVFICTDSKSSLLALK-NIMSPNHLVNNILVKINELKILNITVKFLWI 306
Y+ D FI +DS S++ A+ N +S N + I LK + WI
Sbjct: 77 ----YVMDDCPPEAFIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWI 132
Query: 307 PSHLGIAGNVQVDELAKNSQN 327
PSH GI GN + D LA N
Sbjct: 133 PSHTGIEGNERTDRLAATECN 153
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 16/129 (12%)
Query: 511 NSLFCYTDGSKTAA--NSGCAYITET--ESQVFKLYNENSVFSSELLAIFMLLSHIYSTS 566
S+ YTDGSK+++ + CA + + L +S+F++E+ AI+ L Y
Sbjct: 21 TSIRAYTDGSKSSSQETTTCAIFIPALNKEHAWTLTKGSSIFTAEVTAIYQALKLFY--- 77
Query: 567 SRTEYIFRD---SIFICTDSKSSLLALK-NIMSPNHLVNNILVKINELKILNITVKFLWI 622
+ D FI +DS S++ A+ N +S N + I LK + WI
Sbjct: 78 -----VMDDCPPEAFIYSDSSSAITAISSNSLSENEAITATREIIASLKSSGTRTRLTWI 132
Query: 623 PSHLGIAGN 631
PSH GI GN
Sbjct: 133 PSHTGIEGN 141
>gi|405966353|gb|EKC31648.1| Putative RNA-directed DNA polymerase from transposon BS
[Crassostrea gigas]
Length = 541
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 5 KAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALR 64
KA L ++ + L R L +L+++F+RP+++Y +I+ + + K+ + A R
Sbjct: 251 KAYAKLGLMRKVKYILDRNSLQKLYFSFIRPVLEYADIIWDNIPEYLSLKIENIQLEAAR 310
Query: 65 IISGAYRTSPIESLYAENGQPPLETRRK 92
I++G R + LY E G PL RR+
Sbjct: 311 IVTGGNRLASKTLLYKETGWVPLSKRRE 338
>gi|212535974|ref|XP_002148143.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210070542|gb|EEA24632.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 233
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 292 NELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL------LSMMTSEDLKSAIKK 345
+ L++ V W+P H G+ GN Q D+ AK + + P LS+ + ++
Sbjct: 4 SRLRLSGRPVTIQWVPGHNGVEGNEQADQAAKRAASKPAGPGFGGLSLAYVRRACTEARR 63
Query: 346 KLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-T 399
+ W + N + RR + + D+ +R +L+ GH+ + T
Sbjct: 64 AAVENWV---RENAVQGAHRRGRVYKMPRGWGLDRVAAKAPKRVASRYYQLKTGHAPIGT 120
Query: 400 HNFLLKREDPPLCEWCN-VQLSIQHILLECRKFRA 433
+ +K D P C C ++ + HIL ECR R
Sbjct: 121 YLHRIKARDSPECRACGELRERVSHILFECRGRRG 155
>gi|427791855|gb|JAA61379.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 891
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 200 YTDGSKTAANSGCAYI--------TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
YTD S A C Y ET + L+ N V S E+L+I L + S
Sbjct: 663 YTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVLSIVHALESFSSLPS 721
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
PEY + +DS +++ ++N P+ L + ++ L+ TV W+P H G
Sbjct: 722 VPEYT------LFSDSYAAIRHIQNRTLPHSLEQEVERAVSALQ--PSTVFLRWVPGHSG 773
Query: 312 IAGNVQVDELAKN-SQNAPLLSMMT-SEDLKSAIK 344
I GN LA++ AP + T SED S++K
Sbjct: 774 IDGNELAHRLARDILHRAPFIPWPTPSEDSGSSVK 808
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 516 YTDGSKTAANSGCAYI--------TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSS 567
YTD S A C Y ET + L+ N V S E+L+I L S S
Sbjct: 663 YTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVLSIVHALESFSSLPS 721
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
EY ++F +DS +++ ++N P+ L + ++ L+ TV W+P H G
Sbjct: 722 VPEY----TLF--SDSYAAIRHIQNRTLPHSLEQEVERAVSALQ--PSTVFLRWVPGHSG 773
Query: 628 IAGN 631
I GN
Sbjct: 774 IDGN 777
>gi|71794576|emb|CAI28818.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1432
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI++ L S PE
Sbjct: 1025 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQD-----SGPE 1076
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V + TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI
Sbjct: 1077 ------VNVVTDSQYALGIIQAQPDQSESELVNQIIEKLIEKE----RVYLSWVPAHKGI 1126
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 1127 GGNEQVDKLVSNG 1139
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 25/126 (19%)
Query: 516 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
Y DG AAN Y+T+ Q NE + +EL AI++ L S E
Sbjct: 1025 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQ-----DSGPE 1076
Query: 571 YIFRDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 628
+ + TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI
Sbjct: 1077 ------VNVVTDSQYALGIIQAQPDQSESELVNQIIEKLIEKE----RVYLSWVPAHKGI 1126
Query: 629 AGNVQV 634
GN QV
Sbjct: 1127 GGNEQV 1132
>gi|154271554|ref|XP_001536630.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409300|gb|EDN04750.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1163
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + +GA+ + G A KL T
Sbjct: 952 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTFGAIAWHQPQGQGGTGPAKSGLALKLTT 1011
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCN 105
V ++ LRI++GAY+ +P +L AE PL+ L+A R+K +
Sbjct: 1012 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLDIHLDGLVAKAVNRMKAS 1059
>gi|427791921|gb|JAA61412.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 993
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 123/293 (41%), Gaps = 47/293 (16%)
Query: 2 KSLKAI-NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYH 60
K L AI ++ K L KTWG S +L+L+ + Y + + +S++ + +
Sbjct: 730 KRLTAISHLFKFLGGKTWGTSVHAMLQLYRTLFLGYLRYSLPVLTNTCKSNIRTIESAQG 789
Query: 61 TALRIISGAYR-TSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQL 119
ALR+ G R TS E++ P S ++L + A +
Sbjct: 790 QALRVCLGLPRCTSTAETIAIARDHPA--------------------SIHITLEVLRAHI 829
Query: 120 GRNINRANLPRTVKSRLED---LQIFDRISA--QVIKRD----EYI--APWELSVPEIIY 168
R++ RA + S LED RISA + + RD E I PW L P++
Sbjct: 830 -RHLARAPA-HHLASLLEDRPCASFCKRISAYRECLPRDYTPPERILTPPWCLDQPKLRV 887
Query: 169 LTS--EKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTAANSGCA--YITETESQVF 223
KK LSS A+K + E ++ + YTDGS TA S A + + E+ F
Sbjct: 888 TVPGIRKKTELSSPALKQLSLLMLHEEYKDHVKLYTDGSTTAKGSAGAVNFPAKVEAYHF 947
Query: 224 KLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKN 276
+ + + ++EL A+ L I + IF TDSKS+L L +
Sbjct: 948 RTSHRTTSTAAELAALRSALRWIELESPQKWGIF-------TDSKSALQCLSS 993
>gi|400595699|gb|EJP63491.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 560
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 33/224 (14%)
Query: 120 GRNINRANLPRTVKS-RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYL--TSEKKEN 176
G++ RA LPR +S + + D + P S + L T E E
Sbjct: 205 GKSTGRAKLPRVAESNKPQSGSGVDGL------------PRSGSKSQTTSLDNTGETTET 252
Query: 177 LSSVAVKNAFFQF---KGENQNSLFCYTDGSKTAANS-GCAYITETESQVFKLY----NE 228
NA F+ + E Q L Y+DGSKT ++ G Y Q+
Sbjct: 253 EGLNDAANAGFRLGALQAEIQTRLVVYSDGSKTEQDTAGFGYAVYRRQQLIAQGCGQIGR 312
Query: 229 NSVFSSEL-LAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN-HLVNN 286
+ VF +E+ A+ L + + + R + + + +C D+ S + + P+ +
Sbjct: 313 SEVFDAEIKGAVEGLRAALAHQRPK------EGITVCIDNTSVIDCIGTTAPPSSQMAFR 366
Query: 287 ILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL 330
+ K + I V+ W P H GI GN D+LAK S P+
Sbjct: 367 MFQKTGDAHPGMIRVR--WCPGHTGIEGNELADQLAKESAKMPV 408
>gi|405968947|gb|EKC33970.1| Putative RNA-directed DNA polymerase from transposon BS
[Crassostrea gigas]
Length = 390
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 22 RACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAE 81
R L +L+ +F+RP ++Y ++++ + KL V A RI++G P E+LY E
Sbjct: 120 REHLSKLYISFIRPTLEYASIVWDGCSVHDADKLEKVQLCAARIVTGLPIFVPREALYLE 179
Query: 82 NGQPPLETRRKI 93
G L TRR I
Sbjct: 180 TGWEILRTRRYI 191
>gi|321466426|gb|EFX77421.1| hypothetical protein DAPPUDRAFT_321283 [Daphnia pulex]
Length = 137
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+L+++ A +R +DYG + SA+ ++ KL+ + AL+ + GA R + E+L E G+
Sbjct: 1 MLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGE 60
Query: 85 PPLETRRKILLANYGTRVKC 104
PL RR LA+ ++C
Sbjct: 61 MPLHLRRN--LASVKHYLRC 78
>gi|321464309|gb|EFX75318.1| hypothetical protein DAPPUDRAFT_108042 [Daphnia pulex]
Length = 440
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 60/250 (24%)
Query: 195 NSLFCYTDGSK--TAANSGCA-YITETE-SQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
++L +TDGSK TA + CA +I + SQ + L N+ S+FS+ELLA+ + L
Sbjct: 91 STLCIFTDGSKSSTAQTTACALHIPDRNLSQSWSLSNQASIFSAELLAVDLALDLTYKLN 150
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ V I DS S A+K I S N
Sbjct: 151 EYPQ-----EVMIFCDSSS---AIKTIASTNP---------------------------- 174
Query: 311 GIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKK---KLLSEWHLHWKNNVINNKLRRI 367
GI GN + D LA P KS + +++ WK N++ + L++
Sbjct: 175 GIEGNEEADRLAHYECTNP-------SGTKSGLPPLPIRIIGLLRADWKENLLGD-LKKC 226
Query: 368 KEDTL--LWKSSFD-----KDRRKEIVICRLRIGHSHLT--HNFLLKREDPPLCEWCNVQ 418
++ + + K+ KDR I + RLR GH+HL ++ + K+ DP + C
Sbjct: 227 QKTCIQVMTKTGLTDWFPHKDRATTICLHRLRSGHNHLNSFNHRIDKKADPSCRKGCEAM 286
Query: 419 LSIQHILLEC 428
+++HIL++C
Sbjct: 287 ENVKHILIDC 296
>gi|323838|gb|AAB59862.1| pol polyprotein [Equine infectious anemia virus]
Length = 1138
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 576 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 627
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 628 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 683
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 684 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 728
>gi|417517|sp|P32542.1|POL_EIAVC RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 584 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 635
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 636 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 691
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 692 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 736
>gi|130595|sp|P11204.1|POL_EIAV9 RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1146
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 584 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 635
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 636 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 691
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 692 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 736
>gi|290629|gb|AAA43004.1| reverse transcriptase [Equine infectious anemia virus]
Length = 987
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 66/161 (40%), Gaps = 19/161 (11%)
Query: 163 VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQV 222
+PEI+Y V + + E + + YTDG K AY+T
Sbjct: 436 LPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGIAAYVTSNGRTK 487
Query: 223 FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH 282
K + +E +AI M L +TR + I DS + C + + L L+ SP
Sbjct: 488 QKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEGLGLEGPQSPWW 543
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
I+ I E +I V F W+P H GI GN DE AK
Sbjct: 544 ---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 577
>gi|154281441|ref|XP_001541533.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411712|gb|EDN07100.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1329
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---------GSATQSSLSKLNT 57
+ L TWGL ++ +RP + YGA+ + G A KL T
Sbjct: 1002 VRALSQTTQSTWGLPLRQARMVYNMVIRPALTYGAIAWHQPQGQGGTGPAKSGLALKLTT 1061
Query: 58 VYHTALRIISGAYRTSPIESLYAENGQPPLE 88
V ++ LRI++GAY+ +P +L AE PL+
Sbjct: 1062 VQNSCLRIVAGAYKRTPTSTLEAETHTVPLD 1092
>gi|307180463|gb|EFN68485.1| hypothetical protein EAG_06052 [Camponotus floridanus]
Length = 137
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%)
Query: 5 KAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALR 64
K +NI+ +L WG + + LL ++ A +R M+YG + + S++ L + AL
Sbjct: 33 KLLNIINMLRGTWWGGAPSSLLNIYKALIRGSMEYGCLTFPFNNHSAMRNLENIQLRALC 92
Query: 65 IISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNP 109
G + +P + AE G+ PL R + L + Y ++ S+P
Sbjct: 93 ACLGLRKITPTNIVLAEAGEGPLRFRFEFLTSKYILKIFALDSHP 137
>gi|148745903|emb|CAK49340.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 960
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q + NE + +EL AI++ L +
Sbjct: 592 YVDGAASKDTKQGKAGYVTDRGRQKVVILNETTNQKTELHAIYLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ +P+ + I+ +I E I + W+P+H GI GN Q
Sbjct: 643 --EVNIVTDSQYALGIIQ--ATPDRSESEIVNQIIEELIRKERIYLSWVPAHKGIGGNEQ 698
Query: 318 VDEL 321
VD+L
Sbjct: 699 VDKL 702
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T+ Q + NE + +EL AI++ L S
Sbjct: 592 YVDGAASKDTKQGKAGYVTDRGRQKVVILNETTNQKTELHAIYLALQDSGS--------- 642
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ +P+ + I+ +I E I + W+P+H GI GN Q
Sbjct: 643 --EVNIVTDSQYALGIIQ--ATPDRSESEIVNQIIEELIRKERIYLSWVPAHKGIGGNEQ 698
Query: 634 V 634
V
Sbjct: 699 V 699
>gi|427780325|gb|JAA55614.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 652
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 69/155 (44%), Gaps = 19/155 (12%)
Query: 200 YTDGSKTAANSGCAYI--------TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
YTD S A C Y ET + L+ N V S E+L+I L + S
Sbjct: 381 YTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVLSIVHALESFSSLPS 439
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
PEY + +DS +++ ++N P+ L + ++ L+ TV W+P H G
Sbjct: 440 VPEYT------LFSDSYAAIRHIQNRTLPHSLEQEVERAVSALQ--PSTVFLRWVPGHSG 491
Query: 312 IAGNVQVDELAKN-SQNAPLLSMMT-SEDLKSAIK 344
I GN LA++ AP + T SED S++K
Sbjct: 492 IDGNELAHRLARDILHRAPFIPWPTPSEDSGSSVK 526
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 516 YTDGSKTAANSGCAYI--------TETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSS 567
YTD S A C Y ET + L+ N V S E+L+I L S S
Sbjct: 381 YTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVLSIVHALESFSSLPS 439
Query: 568 RTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 627
EY ++F +DS +++ ++N P+ L + ++ L+ TV W+P H G
Sbjct: 440 VPEY----TLF--SDSYAAIRHIQNRTLPHSLEQEVERAVSALQ--PSTVFLRWVPGHSG 491
Query: 628 IAGN 631
I GN
Sbjct: 492 IDGN 495
>gi|9944518|gb|AAG02702.1|AF247394_2 pol protein [Equine infectious anemia virus]
Length = 1146
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 584 WEMQKGWYYSWLPEIVYT--------HQVVHDDWKMKLVEEPTSGITIYTDGGKQNGEGI 635
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 636 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 691
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 692 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGICGNQLADEAAK 736
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 79/218 (36%), Gaps = 27/218 (12%)
Query: 422 QHILLECRKFRASRNKWHLKDDISALLGDDHDE----IYKCIIISAQVIKRD---EYIAP 474
Q IL +K + W ++ LL E + KC K E
Sbjct: 530 QGILWAGKKIMKANKGWSTVKNLMLLLQHVATESITRVGKCPTFKVPFTKEQVMWEMQKG 589
Query: 475 WELS-VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE 533
W S +PEI+Y V + + E + + YTDG K AY+T
Sbjct: 590 WYYSWLPEIVYT--------HQVVHDDWKMKLVEEPTSGITIYTDGGKQNGEGIAAYVTS 641
Query: 534 TESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI 593
K + +E +AI M L T + I DS + C + + L L+
Sbjct: 642 NGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEGLGLEGP 697
Query: 594 MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
SP I+ I E +I V F W+P H GI GN
Sbjct: 698 QSPWW---PIIQNIREKEI----VYFAWVPGHKGICGN 728
>gi|116196678|ref|XP_001224151.1| hypothetical protein CHGG_04937 [Chaetomium globosum CBS 148.51]
gi|88180850|gb|EAQ88318.1| hypothetical protein CHGG_04937 [Chaetomium globosum CBS 148.51]
Length = 2913
Score = 50.4 bits (119), Expect = 0.003, Method: Composition-based stats.
Identities = 101/437 (23%), Positives = 168/437 (38%), Gaps = 62/437 (14%)
Query: 27 RLFYAFVRPIMDYGAVIYGSAT-QSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQP 85
+LF A V P+MDY A ++ A + +LS LN I+GA+RT+ + AE
Sbjct: 2450 QLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVVEAEASIY 2509
Query: 86 PLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRI 145
P+ R A+ + P TH + + RT + LQ R+
Sbjct: 2510 PVRERHAQAAASLWINIHTLPG-------THPLAMKKV------RTTVRFVSPLQKIARV 2556
Query: 146 SAQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAVKNAFFQF 189
+ V + R E I PW + + K + +S +VK
Sbjct: 2557 AEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGIVGM 2616
Query: 190 KGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNT 249
G +++LF T S+T N V E + +++EL AI M L +
Sbjct: 2617 GGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL--- 2662
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVKFLW 305
P I + + T ++S+L A+ + +I+ +I +L L+ +V FLW
Sbjct: 2663 ---PASICHRRITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVNFLW 2717
Query: 306 IPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
IP+ + A A+ + KS + + V K
Sbjct: 2718 IPAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVGVGKFS 2777
Query: 366 RIKEDTLLWKSS---FDKDRRKE-IVICRLRIGHSHLTHNFLLKR---EDPPLCEWCNVQ 418
+ + L K + +DK +R+E V+ +LR G + L N L R + LC +
Sbjct: 2778 KAMDAALPGKHTRDLYDKLKRREACVLAQLRTGMARL--NGFLSRIGAVESDLCACGQAR 2835
Query: 419 LSIQHILLECRKFRASR 435
S++H L C ++ A R
Sbjct: 2836 ESVEHFLFRCVRWTALR 2852
>gi|363583980|gb|AEW27537.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI++ L +
Sbjct: 597 YVDGAANRETKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + K S + LVN I+ EL I V W+P+H GI GN
Sbjct: 648 --EVNIVTDSQYALGLIQAKPDRSESDLVNQII----ELLIQKDKVYLSWVPAHKGIGGN 701
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 702 EQVDKLVSNG 711
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + Y+T+ Q +E + +EL AI++ L S
Sbjct: 597 YVDGAANRETKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 647
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + K S + LVN I+ EL I V W+P+H GI GN
Sbjct: 648 --EVNIVTDSQYALGLIQAKPDRSESDLVNQII----ELLIQKDKVYLSWVPAHKGIGGN 701
Query: 632 VQV 634
QV
Sbjct: 702 EQV 704
>gi|440484572|gb|ELQ64628.1| LOW QUALITY PROTEIN: hypothetical protein OOW_P131scaffold00595g3
[Magnaporthe oryzae P131]
Length = 482
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 25/185 (13%)
Query: 259 DSVFICTDSKSSLLALKNIMSPNHLVNNILVK--INELKILNITVKFLWIPSHLGIAGNV 316
D++++C DS S + L+ S + I + ELK ++V+ W P H GI GN
Sbjct: 94 DTIWVCVDSASVIWGLRGSASLSSQWAYIRFHELVEELKDTGVSVRIRWCPGHEGIEGNE 153
Query: 317 QVDELAKNSQNAPL-----LSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDT 371
+ D LA P T ++S ++K W+ ++ R
Sbjct: 154 KADRLADEGAKGPADTDPRTQGATVSGIRSELRKAAREASARCWQARKTSDAYDR----- 208
Query: 372 LLWKSSFDKDRRK-EIVICR--------LRIGHSHLT--HNFLLKREDPPLCEWCNVQLS 420
W+ ++ + E+ + R +R GH H+ + C WC+ +
Sbjct: 209 --WQLEYNPTKEPNELGLPRRILGHYLAMRTGHGDFRGYHDRFAHQGAKTQCAWCDNSTA 266
Query: 421 IQHIL 425
H++
Sbjct: 267 PDHLV 271
>gi|326480183|gb|EGE04193.1| hypothetical protein TEQG_03224 [Trichophyton equinum CBS 127.97]
Length = 210
Score = 50.1 bits (118), Expect = 0.004, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 290 KINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL-LSMMTSEDLKS------- 341
+++EL+ L V+F WIP+H+G+ GN + D+LAK + + L L + T + +S
Sbjct: 11 ELDELRRLGWEVQFRWIPAHVGVPGNEEADQLAKEAASVALNLGIDTGQPPESDQLRILM 70
Query: 342 AIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-TH 400
A K ++ W + N R + L + R I ++R G L +
Sbjct: 71 ATTKTTITSWETANHGRDLFNLGARPGKGIL--GTHRGTHRAISSAITQMRTGKIGLNAY 128
Query: 401 NFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK 437
+ + D C+ +++H+LLECR + R++
Sbjct: 129 LHTINKADTDKCQCGYGPQTVRHVLLECRNWADERHR 165
>gi|156045854|ref|XP_001589482.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980]
gi|154693599|gb|EDN93337.1| hypothetical protein SS1G_09203 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 778
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 154/403 (38%), Gaps = 57/403 (14%)
Query: 55 LNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLIL 114
L ++ + ALR I G ++TSPI+ + E P E + V P
Sbjct: 104 LQSLQNLALRKILGVFKTSPIKPMEIEAALCPPE----LATEKENQDVVATPQR------ 153
Query: 115 THAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKK 174
+ + L + S +D FD ++ + I Y PW+ VP + ++ K
Sbjct: 154 ------KQLKPTQLEKIKNSIQKD---FDPLTLEGIHHF-YFPPWKKEVPYKVNISKLGK 203
Query: 175 ENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITE--------TESQVFKLY 226
E + + N F+++ +N++ YTD S T G + + +
Sbjct: 204 E--EAAMIHNLAFKYR--CKNTITIYTDASSTLEGIGIGIGIAVILPNGRISHQETINIG 259
Query: 227 NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMS-PNHLVN 285
V++ ELL + + + N+ ++P F+ I +D+++ L LK P
Sbjct: 260 VNQLVYNGELLGVTKAIEY-ANSIAQPGNKFK----IYSDNQAGLFRLKTPSDLPGQSCQ 314
Query: 286 NILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIK 344
+K E ++ + W+P H + GN D LAK + P S TS
Sbjct: 315 IKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKEATKIPSSSHETSYASIGMDI 374
Query: 345 KKLLSEWHLHWKNNVINNKLRRIKED---TLLWKSSFD---KDRRKEIVIC---RLRIGH 395
K++ SE +W + N + WK S K IC +L+IGH
Sbjct: 375 KRMKSE---NWITILNTNNFHQPSSTYSRNYPWKISSKIRIPGNIKRSTICALFQLKIGH 431
Query: 396 SHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
+ F + D C C + S H+LL C ++ +R
Sbjct: 432 GYFKSYLKRFGISSNDN--CR-CGGKESPDHLLLSCPLYKMAR 471
>gi|344311705|gb|AEN04375.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L S PE
Sbjct: 441 YVDGAAXRXTKXGKAGYVTDKGRQKIVXLNETTNQKAELQAIQLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSDSEIVTQIIEQLITKERVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|3248895|gb|AAC24015.1| polymerase polyprotein [Equine infectious anemia virus]
gi|3248902|gb|AAC24021.1| polymerase polyprotein [Equine infectious anemia virus]
Length = 1146
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 584 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 635
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 636 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 691
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 692 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGIYGNQLADEAAK 736
>gi|9626532|ref|NP_056902.1| pol polyprotein [Equine infectious anemia virus]
gi|2801512|gb|AAC82600.1| pol polyprotein [Equine infectious anemia virus]
gi|2905988|gb|AAC03761.1| pol [Equine infectious anemia virus]
Length = 1138
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 576 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 627
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 628 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 683
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 684 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGIYGNQLADEAAK 728
>gi|197725636|gb|ACH73021.1| pol protein, partial [Human immunodeficiency virus 2]
Length = 1032
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 17/143 (11%)
Query: 182 VKNAFFQFKGENQNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAI 239
V+ AF K + YTDGS K + Y+T+ K+ + + +EL A
Sbjct: 602 VRLAFNLVKDPIPGAETIYTDGSCNKQSKEGKAGYVTDRGRDRVKVLEQTTNQQAELEAF 661
Query: 240 FMLLSHICNTRSRPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILN 298
M L T S P+ I DS ++ ++A + S N LVN I+ E I
Sbjct: 662 AMAL-----TDSGPKVNIIVDSQYVM-----GIVAGQPTESENRLVNQII----EEMIKK 707
Query: 299 ITVKFLWIPSHLGIAGNVQVDEL 321
+ W+P+H GI GN +VD L
Sbjct: 708 EAIYVAWVPAHKGIGGNQEVDHL 730
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 15/142 (10%)
Query: 498 VKNAFFQFKGENQNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAI 555
V+ AF K + YTDGS K + Y+T+ K+ + + +EL A
Sbjct: 602 VRLAFNLVKDPIPGAETIYTDGSCNKQSKEGKAGYVTDRGRDRVKVLEQTTNQQAELEAF 661
Query: 556 FMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI 615
M L+ S I DS ++ ++A + S N LVN I+ E I
Sbjct: 662 AMALTD----SGPKVNIIVDSQYVM-----GIVAGQPTESENRLVNQII----EEMIKKE 708
Query: 616 TVKFLWIPSHLGIAGNVQVPFL 637
+ W+P+H GI GN +V L
Sbjct: 709 AIYVAWVPAHKGIGGNQEVDHL 730
>gi|353227190|emb|CCA77710.1| hypothetical protein PIIN_10861, partial [Piriformospora indica DSM
11827]
Length = 530
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 153/393 (38%), Gaps = 76/393 (19%)
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSL 112
KL + A I+GA RT+ ++L A P++ ++ R+ P ++P+S
Sbjct: 151 KLQAIQRRAAIGITGAIRTTAGDTLDAHLNMLPIKETLRLTCQKAVARLASLPATHPLSK 210
Query: 113 ILTHAQLGRNINRANLP-----RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEII 167
+ A G + R N P ++ S+++DL+ S + P+ +S+ E
Sbjct: 211 FVKRASRGL-LQRHNAPLHCIFHSIDSKVDDLETITPAS----RNPNATNPFTISIEESR 265
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----TETESQV 222
L E N + N + YTDGS G + S
Sbjct: 266 MLAKEVDNNSNG-------------NNEQVVAYTDGSGMEGMIGAGAVLYRDGVRIRSAR 312
Query: 223 FKLY--NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--M 278
F L E+ V EL+ I + + ++ E I + I D+++++ ++N+
Sbjct: 313 FLLGEDTEHMVHKGELVGIALGVQ-----LAKMERIIIPRIKISLDNQAAIQGMENVSAK 367
Query: 279 SPNHLVNNILVKINELKI-------------------LNITVKFLWIPSHLGIAGNVQVD 319
+ H+++ I I+EL+ + + W+P H GI GN D
Sbjct: 368 AGQHIIHKIHRAIDELRNNQKRRQELVEASDDETRINRSTQITLTWVPGHEGIEGNEAAD 427
Query: 320 ELAK-----NSQNAPLLSMMTSEDLK---SAIKKKL----LSEWHLHWKNNVINNKLRRI 367
+ AK S A L T + L SA++++L H WK++ ++ R I
Sbjct: 428 KEAKKAITDGSSTAATLPPWTKDTLPQNISALRQELKLAARKSAHDKWKSSAQYDRTRPI 487
Query: 368 KEDTLLWKSSF-----DKDRRKEIVICRLRIGH 395
D + + + + R + + +LR GH
Sbjct: 488 --DKTMPSNKYLQITDELTRAEAAALIQLRTGH 518
>gi|331249470|ref|XP_003337352.1| hypothetical protein PGTG_19051 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 890
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
S + +E+ AI + L I N + ++V I +D++++L + N + +
Sbjct: 661 SAYEAEVQAINIGLDIISNEAEKNNLPPFNNVNIFSDNQATLQVIANPPLSKSNQSTFIQ 720
Query: 290 KINELKIL----NITVKFLWIPSHLGIAGNVQVDELAKN-SQNAPLLSMMTSEDLKSAIK 344
++L IL + ++ LW P+H+GI N +VD+LAK ++ L + S I+
Sbjct: 721 IFDKLNILITDFHFSISLLWCPAHVGIPENEKVDQLAKEATEGNTLFDLEQQSRTLSNIQ 780
Query: 345 KKLLSEWH-LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHN-F 402
+ + S++ + K+ +I N + ++ S +R I +LR GHS L F
Sbjct: 781 QIINSKFSFVKKKDPIIRNHISLSNIPIKIFNSLNRLERGLSSTIYQLRSGHSPLNDFLF 840
Query: 403 LLKREDPPLCEWCNVQLSIQHILLE 427
+ + D P C C +++H L+E
Sbjct: 841 HIDKIDSPDCSHCRSPETVKHFLIE 865
>gi|9929862|dbj|BAB12104.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 586 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 637
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 638 AAYVTSNGKTKQKRLGPVTHQVAERMAIQMALE---DTRDKQINIVTDSYY-CWKNITEG 693
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 694 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGIYGNQLADEAAK 738
>gi|443302771|gb|AGC82285.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI H+ S PE
Sbjct: 540 YVDGAANRETKAGKAGYVTDRGRQKIITLNETTNQKTELQAI-----HLALQDSGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|331216904|ref|XP_003321131.1| hypothetical protein PGTG_02173 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 672
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 7/205 (3%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
S + +E+ AI + L I N + ++V I +D++++L + N + +
Sbjct: 443 SAYEAEVQAINIGLDIISNEAEKNNLPPFNNVNIFSDNQATLQVIANPPLSKSNQSTFIQ 502
Query: 290 KINELKIL----NITVKFLWIPSHLGIAGNVQVDELAKN-SQNAPLLSMMTSEDLKSAIK 344
++L IL + ++ LW P+H+GI N +VD+LAK ++ L + S I+
Sbjct: 503 IFDKLNILITDFHFSISLLWCPAHVGIPENEKVDQLAKEATEGNTLFDLEQQSRTLSNIQ 562
Query: 345 KKLLSEWH-LHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHN-F 402
+ + S++ + K+ +I N + ++ S +R I +LR GHS L F
Sbjct: 563 QIINSKFSFVKKKDPIIRNHISLSNIPIKIFNSLNRLERGLSSTIYQLRSGHSPLNDFLF 622
Query: 403 LLKREDPPLCEWCNVQLSIQHILLE 427
+ + D P C C +++H L+E
Sbjct: 623 HIDKIDSPDCSHCRSPETVKHFLIE 647
>gi|294952671|ref|XP_002787406.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239902378|gb|EER19202.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 664
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 126/310 (40%), Gaps = 72/310 (23%)
Query: 178 SSVAVKNAFFQFKGENQNSL------FCYTDGSKTAANSG-----CAYITE--TESQVFK 224
SS + F+ +G+ L YTDGSK + G A+I+ E+ ++
Sbjct: 359 SSDGIDACCFKLEGDGSPPLDDGTIPIVYTDGSKFPMDDGSHRVGAAFISHHSGEAGLYC 418
Query: 225 LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLV 284
L + +V +EL+AI M L I N R + DSKS+L++++ S
Sbjct: 419 LPSHATVQQAELVAIKMALKTI-NRR----------CMVAVDSKSALMSIRGDRS----- 462
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL-----LSMMTS--- 336
+L +I L I F W+ +H G N VD LAK++ + +S T+
Sbjct: 463 TTLLEEIRGL-IRKTGAMFTWVKAHNGALYNEWVDALAKSATRVGIFMEVEVSARTTTTY 521
Query: 337 -----EDLKSAIKKKLL-----SEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI 386
+ K ++ K L +++ W + KL ++K K+ F
Sbjct: 522 LSKLGDARKPMVRLKYLTNTTITDFVGSWHHVDTLRKLAKMKNGVYALKAVFG------- 574
Query: 387 VICRLRIGHSHLTHNFLLKREDPPLCEWCNVQLSI-------QHILLECRKFRASRNKWH 439
+ R R +S R D + +C+V + +H L+ CRK+R+ R K+
Sbjct: 575 -LLRTRRYYS---------RSDSTVSPYCDVCGHLGDFLDDTRHALVYCRKYRSLRFKYF 624
Query: 440 LKDDISALLG 449
+ I + G
Sbjct: 625 GPERIDPVTG 634
>gi|307181059|gb|EFN68825.1| Putative 115 kDa protein in type-1 retrotransposable element R1DM
[Camponotus floridanus]
Length = 135
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 5 KAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALR 64
K +NIL +L WG + + LL ++ A +R M YG + + SS+ L ++ ALR
Sbjct: 33 KLLNILNMLRGTWWGGAPSSLLTIYRALIRDSMAYGCLTFPFNNHSSMRHLESIQLQALR 92
Query: 65 IISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNP 109
G +T+ ++ E G+ PL R ++L + Y ++ S+P
Sbjct: 93 TCLGLRKTT--TNVVLEAGEGPLRFRFELLTSKYILKIFALDSHP 135
>gi|321447121|gb|EFX61012.1| hypothetical protein DAPPUDRAFT_122634 [Daphnia pulex]
Length = 277
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%)
Query: 25 LLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQ 84
+L+++ A +R +DYG + SA+ ++ KL+ + AL+ + GA R + E+L E G+
Sbjct: 1 MLQIYQALIRSKLDYGGELIESASITAKKKLDKIQAQALKTVVGAPRDTATEALLRETGE 60
Query: 85 PPLETRRKI 93
PL RR +
Sbjct: 61 MPLHLRRNL 69
>gi|116200572|ref|XP_001226098.1| hypothetical protein CHGG_10831 [Chaetomium globosum CBS 148.51]
gi|88175545|gb|EAQ83013.1| hypothetical protein CHGG_10831 [Chaetomium globosum CBS 148.51]
Length = 368
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 7 INILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQ-----SSLSKLNTVYHT 61
I L L KTWG + A + ++ +R + YGA + + T+ + +L +
Sbjct: 23 IYALTRLAAKTWGCTFARVREIYSKVIRSAIAYGASAFHTPTEVGPPRGAAKELAKIQSE 82
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLE 88
LR+++GAY+ +PI+SL E PP++
Sbjct: 83 CLRVVAGAYKATPIQSLETETYCPPID 109
>gi|425774322|gb|EKV12630.1| C6 transcription factor, putative [Penicillium digitatum PHI26]
Length = 579
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 292 NELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ--NAPLLSMMTSED----------- 338
N+++ V WIP+H+G++GN D AK + A + + S D
Sbjct: 352 NQVQQEPTRVTIRWIPAHVGVSGNEYADTEAKGAALLGAGIGTTTGSGDPGRPTIRLAAA 411
Query: 339 LKSAIKKKLLSEWHLHWKNNVINNKLRRI----KEDTLLWKSSFDKDRRKEIVICR-LRI 393
K A+++++ W W+ + +R+ + TL K + ++ R +RI
Sbjct: 412 AKRAVRQRVRERWERQWERETTSAPTKRLVQAPNKKTLRLYEGLSKPQCAILIQMRTMRI 471
Query: 394 GHSHLTHNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASRNK-WHLKDDIS 445
G H D LC+ + +HIL++C ++ R K W DI
Sbjct: 472 GLRHFLFKIKAAETDRCLCD--EGSQTPKHILMQCPRYTIPRTKLWKQLRDIG 522
>gi|343422101|emb|CCD18584.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 1019
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 95/426 (22%), Positives = 163/426 (38%), Gaps = 31/426 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYG-AVIYGSATQSSLSKLNTVYHTALRIISG 68
L+ + + WG R L + A V+ M YG A + + S +L V A I++
Sbjct: 365 LRAVASPEWGPDREKLRAFYLALVQARMCYGFASWWFDTSLSDRERLERVQTHAAHIVAC 424
Query: 69 AYRTS-PIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRAN 127
+ + ++L +P E + L Y + PV HAQ+ +I
Sbjct: 425 IPKAANRADALREARLKPINEVAHRRALEYY---LCLKAKGPV-----HAQVAESIFPPE 476
Query: 128 LPRTVKSRLEDLQ-IFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVK-NA 185
P + RLE +Q + I D + W V I + K + K +
Sbjct: 477 QP--IHVRLEKVQNLCSTIDNPEKTHDAKVLQWARRVHFNITTPAGLKADAPEKDKKVHT 534
Query: 186 FFQFKGENQNSLFCYTDGSKTA-ANSG-----CAYITETESQVFKLYNENSVFSSELLAI 239
+ +G +TDGS A +SG C E V + + +E +A+
Sbjct: 535 MLRVQGFRGFDYQVWTDGSVVADVSSGAGALVCPKDGRREKVVLGAGSLACSYRAECVAM 594
Query: 240 FMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKI--- 296
L + N + + R V TDS S L+AL P + + IL +I +L +
Sbjct: 595 EAGLKRLVNAIALSK-THRTRVVAFTDSLSLLMALNT--GPAAVEDAILRRIWDLILHIV 651
Query: 297 -LNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHW 355
L ++ F ++ SH G+ N DE A+ P M D+ + ++ ++ +E + +
Sbjct: 652 RLRVSFNFQFVFSHCGVPRNEAADEGAEQGNAGPQSYMGWITDVVTGVESQVRNEMYRAF 711
Query: 356 KNNVINNKLRRIKEDTLLWKSSFDK-DRRKEIVICRLRIG---HSHLTHNFLLKREDPPL 411
++ + R D + DR E ++ + R G H H L + D
Sbjct: 712 EDGRMPRTHRSALLDRVRPAPKHSNVDRLGESLLAQFRTGTSKHFGCLHRVLTRNTDRHE 771
Query: 412 CEWCNV 417
C WC+
Sbjct: 772 CRWCSA 777
>gi|407732992|gb|AFU26802.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|407733016|gb|AFU26823.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|7496780|pir||T19605 hypothetical protein C31C9.5 - Caenorhabditis elegans
Length = 701
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 8 NILKVLNNKT----------WGLSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLN 56
N++K + NKT WG R +L A ++P YGA + S + ++L KL
Sbjct: 425 NVIKSMQNKTRVIKSMAGTNWGNDRETMLYTTQALIKPTALYGAPAWTSLLSDTNLEKLE 484
Query: 57 TVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKILLAN-YGTRVKCNPSNPVSLILT 115
Y +ALR G + +P + +Y E PL+ K+ Y +K N ++P +
Sbjct: 485 IAYRSALRACVGLTKDTPTDHIYQECRVLPLKEEYKLATQQMYLAAIKSN-THPCRDLKA 543
Query: 116 HAQLGRNINRANLPRTVKSRLEDLQI----FDRISAQ 148
QL R +P S E L++ D+ AQ
Sbjct: 544 KRQLERTSKPPRIPPLKLSDSEKLRLDNIPGDKTEAQ 580
>gi|407732984|gb|AFU26795.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733031|gb|AFU26835.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733041|gb|AFU26843.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|407733026|gb|AFU26831.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|407733021|gb|AFU26827.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|407733008|gb|AFU26816.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|407733036|gb|AFU26839.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYALGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|68522015|gb|AAY98614.1| pol protein [Human immunodeficiency virus 1]
gi|212383184|gb|ACJ25885.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L S PE
Sbjct: 592 YVDGAANRDTKMGKAGYVTDRGRQKVVTINETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKQRVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|407915263|gb|EKG08960.1| hypothetical protein MPH_14085 [Macrophomina phaseolina MS6]
Length = 454
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/338 (21%), Positives = 123/338 (36%), Gaps = 92/338 (27%)
Query: 35 PIMDYGAVIYGSATQSSL---------------SKLNTVYHTALRIISGAYRTSPIESLY 79
P+ YGA ++ T + + ++ TA R + +RT+PI L+
Sbjct: 3 PVATYGAEVWYEGTMKPIPYTARTVIPRQSYHTATIDRALRTAARAVVPVWRTTPIPVLH 62
Query: 80 AENGQPPLET------------------------RRKILLANYGTRVKCNPSNPVSLILT 115
E G PP R +++ + G + S P + L
Sbjct: 63 RETGIPPASVLLQQIQRRASLRLRLLDEAHPIVGRTQVIRGHGGWAPRAPNSPPRATRLQ 122
Query: 116 H-AQLGRNINRANL--PRTVKSRLEDLQIFDRIS---AQVIKRDEYIAPWELSVPEIIYL 169
AQL + R L P S + +Q +R + A+ +KRD PE +++
Sbjct: 123 RTAQLVEDCERPQLLQPSYTNSPQKTVQGKERGTKEFAESLKRDP---------PETLHI 173
Query: 170 TSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNEN 229
S+ SS+ K A+ + Y+ G++ A SG + E
Sbjct: 174 YSDG----SSMNSKTAW---------AFVAYSHGARIHAQSGSLHKAE------------ 208
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILV 289
VF +E+ L+ + +V +C D+ S + + H +
Sbjct: 209 -VFDAEIRGAAEGLAWAAANAE---ALQATNVTLCIDNTSVIQGID-----GHTPASSQS 259
Query: 290 KINELKI----LNITVKFLWIPSHLGIAGNVQVDELAK 323
+ LK L I V+ W P H+GI GN + D+LAK
Sbjct: 260 QFTRLKSTRQELPIPVETRWCPGHMGITGNEEADQLAK 297
>gi|403413368|emb|CCM00068.1| predicted protein [Fibroporia radiculosa]
Length = 526
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 193 NQNSLFCYTDGS--KTAANSGCAYITET-----ESQVFKLYNENSVFSSELLAIFMLLSH 245
++NS + +TDGS + SGCA++T + S F ++F +E++A+ +
Sbjct: 97 DENSCYLFTDGSLLPDGSRSGCAWLTMSGHNYLNSGKFGA-GRCTIFDAEMMALARGIHS 155
Query: 246 ICNTRSRPEYIFRDSVFICTDSKSSLLALKNI-MSPNHLVNNILVKINELKILNIT---- 300
+ P+ + +C D+ +L + N M P+ LV+ IL +K L +
Sbjct: 156 ALH--DAPQNC--THLVLCVDNAGALSKILNCEMGPSQLVS-ILAAEKVMKFLQRSEQHH 210
Query: 301 VKFLWIPSHLGIAGNVQVDELAKNS 325
+ LW+PSH + N VDELAK++
Sbjct: 211 ISLLWVPSHKDVPPNEFVDELAKSA 235
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 75/155 (48%), Gaps = 22/155 (14%)
Query: 509 NQNSLFCYTDGS--KTAANSGCAYITET-----ESQVFKLYNENSVFSSELLAIFM-LLS 560
++NS + +TDGS + SGCA++T + S F ++F +E++A+ + S
Sbjct: 97 DENSCYLFTDGSLLPDGSRSGCAWLTMSGHNYLNSGKFGA-GRCTIFDAEMMALARGIHS 155
Query: 561 HIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI-MSPNHLVNNILVKINELKILNIT--- 616
++ ++ +C D+ +L + N M P+ LV+ IL +K L +
Sbjct: 156 ALHDAPQNCTHLV-----LCVDNAGALSKILNCEMGPSQLVS-ILAAEKVMKFLQRSEQH 209
Query: 617 -VKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQSD 650
+ LW+PSH + N V E+ KS+ +Y Q +
Sbjct: 210 HISLLWVPSHKDVPPNEFVD--ELAKSALEYEQPE 242
>gi|116194292|ref|XP_001222958.1| hypothetical protein CHGG_03744 [Chaetomium globosum CBS 148.51]
gi|88179657|gb|EAQ87125.1| hypothetical protein CHGG_03744 [Chaetomium globosum CBS 148.51]
Length = 1554
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 173/453 (38%), Gaps = 98/453 (21%)
Query: 35 PIMDYGAVIYGSATQS-SLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPPLETRRKI 93
P+MDY A ++ A +LS LN I GA+RT+ + AE P+ R
Sbjct: 1099 PVMDYAANVWMHACGGKALSWLNRAQKIGALAIMGAFRTAATTVVEAEASIYPVRERHTQ 1158
Query: 94 LLANYGTRVKCNP-SNPVSL--ILTHAQLGRNINR--ANLPRTVKSRLEDLQIFDRISAQ 148
+ P S+P+++ I T + + + + T R+E +Q +
Sbjct: 1159 AAVRLWINIHTLPGSHPLAVKKIRTTVRFVSPLQKLAPAVEGTEVDRMETIQEY------ 1212
Query: 149 VIKRDEYIAPWELSV-PEIIYLTSEKKENL---------SSVAVKNAFFQFKGENQNSLF 198
++PWE + P + + E + +S AVK G +++LF
Sbjct: 1213 ------AVSPWEPRLRPTVEADRARAAEKVDKATGILIATSSAVKGGIVGMGGIARDTLF 1266
Query: 199 CYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFR 258
T+ +T A+ A T E + +++EL AI M L + P I
Sbjct: 1267 NRTN--ETVASYAVALGTR---------EEQNPYTAELAAITMALEKV------PASICH 1309
Query: 259 DSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVKFLWIPSHLGIAG 314
+ I ++S+L A++ + I+ I EL L+ ++ W+P+ A
Sbjct: 1310 RHITIAPRNQSALAAIRQPRQQSG--QGIIRHIYELTRLHQKRGNSINLQWVPAETDFAL 1367
Query: 315 NVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLW 374
++ AK + T E S+WH H K+ I + + ++ ++
Sbjct: 1368 GLE----AKAAAQGATREGRTPE-----------SQWH-HAKSTAIRAAMAKQRKRRVIP 1411
Query: 375 K--SSFDK------------------DRRKEIVICRLRIGHSHLTHNFLLKR---EDPPL 411
+ S F K RR+ ++ +LR G + L N L R +
Sbjct: 1412 EVVSKFSKAIDAALPGKHTRVLYDKLKRREACILAQLRTGMAKL--NGFLNRIGAAESDF 1469
Query: 412 CEWCNVQLSIQHILLECRKFRASRNKWHLKDDI 444
C + ++ H LL C K+ A L+DD+
Sbjct: 1470 CACGHASGTVGHFLLRCTKWTA------LRDDM 1496
>gi|156061383|ref|XP_001596614.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980]
gi|154700238|gb|EDN99976.1| hypothetical protein SS1G_02835 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 735
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 31/300 (10%)
Query: 155 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANS---- 210
Y PW+ VP + ++ KE + + N F+++ +N++ YTD S T
Sbjct: 383 YFPPWKKEVPYKVNISKLGKE--EAAMIHNLAFKYRC--KNTIAIYTDASSTLEGIRIGI 438
Query: 211 GCAYITE----TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
G A I + + + V++ ELL + + + N+ ++P F+ I +D
Sbjct: 439 GIAVILPNGRISHQETINIGVNQLVYNDELLGVTKAIEY-TNSIAQPGNKFK----IYSD 493
Query: 267 SKSSLLALKNIMS-PNHLVNNILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
+++ L LK P +K+ E ++ + W+P H + GN D LAK
Sbjct: 494 NQAGLFRLKTPSDLPGQSCQIKAIKVAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKE 553
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFD---KD 381
+ P S TS K++ SE + N ++ WK S
Sbjct: 554 ATKIPSSSHETSYAFIGMDIKRMKSENWIAILNTNNFHQPSSTYSRNYPWKISSKIRVPG 613
Query: 382 RRKEIVICR---LRIGHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
K IC L+IGH + F + D C C + S H+LL C ++ R
Sbjct: 614 NIKRSTICALFLLKIGHGYFKSYLKRFGISSNDS--CR-CGGKESPDHLLLNCPIYKTVR 670
>gi|27311168|ref|NP_758887.1| pol protein [Simian immunodeficiency virus SIV-mnd 2]
gi|26557008|gb|AAM08706.2|AF367411_2 pol protein [Simian immunodeficiency virus SIV-mnd 2]
Length = 1010
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYIT-ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYI 256
Y DG+ + + Y+T +S+V L N + +EL AI M L S P+
Sbjct: 608 YVDGAANRNSKEGKAGYVTARNKSRVIALENTTNQ-KAELEAIKMALQD-----SGPK-- 659
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
V I TDS+ ++ L +P+ N I+ +I EL I V W+P+H GI GN
Sbjct: 660 ----VNIVTDSQYAMGILS--AAPDQSDNPIVREIIELMIHKEAVYLAWVPAHKGIGGNE 713
Query: 317 QVDEL 321
QVD+L
Sbjct: 714 QVDKL 718
>gi|9929869|dbj|BAB12110.1| pol polyprotein [Equine infectious anemia virus]
Length = 1148
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 586 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 637
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L I R + I DS + C + +
Sbjct: 638 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALEDI---RDKQVNIVTDSYY-CWKNITEG 693
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP I+ I E +I V F W+P H GI GN DE AK
Sbjct: 694 LGLEGPQSPWW---PIIQNIREKEI----VYFAWVPGHKGIYGNQLADEAAK 738
>gi|116197178|ref|XP_001224401.1| hypothetical protein CHGG_05187 [Chaetomium globosum CBS 148.51]
gi|88181100|gb|EAQ88568.1| hypothetical protein CHGG_05187 [Chaetomium globosum CBS 148.51]
Length = 401
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + ++K L +
Sbjct: 72 LSRLAESTWGLGLAKAREVYKKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNK 131
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GAY+ +PI +L E PPL+ LA++ TR++
Sbjct: 132 SLRIVAGAYKHTPIRNLETETWVPPLDLYSNKRLADFETRLQ 173
>gi|116208494|ref|XP_001230056.1| hypothetical protein CHGG_03540 [Chaetomium globosum CBS 148.51]
gi|88184137|gb|EAQ91605.1| hypothetical protein CHGG_03540 [Chaetomium globosum CBS 148.51]
Length = 812
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 9 ILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYH 60
+L L TWGL A ++ +R + YGA + G + ++K L +
Sbjct: 482 VLSRLAASTWGLGLAKAREVYTKCIRSTLAYGASSFHIPTDVGGEPVKKGITKALGKAQN 541
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTR--------VKCNPSNPVSL 112
+LRI++GA++ +PI +L E PPL+ LA++ TR V+ S+
Sbjct: 542 KSLRIVAGAFKHTPIRNLETETWVPPLDPYLNKRLADFETRLQRTDLDDVQGGKKTAGSV 601
Query: 113 ILTHAQ------LGRNINRANLPRTVKSR 135
ILT R+ NR PRTV R
Sbjct: 602 ILTACSKIQQRLRSRSGNRGR-PRTVGLR 629
>gi|71024129|ref|XP_762294.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
gi|46101799|gb|EAK87032.1| hypothetical protein UM06147.1 [Ustilago maydis 521]
Length = 345
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 103/233 (44%), Gaps = 30/233 (12%)
Query: 216 TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALK 275
TET + + ++V+ +ELLAI L H I I D++++++ +
Sbjct: 80 TETWEFAKAIGSGSTVYRAELLAIRKALEH---------GIANAGATIFCDNRAAVIHID 130
Query: 276 NIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL---LS 332
S + ++ I + + V +WIP H I GN + D LA+ + + +
Sbjct: 131 ARPSDDPDISAIQQMSSGRR-----VTVVWIPGHRDIPGNERADTLAQGAADDAIGFPAD 185
Query: 333 MMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-----RIKEDTLLWKSSFDKDRRKEIV 387
++ A+ ++ + W W++ ++L+ R+ E L+K R + +
Sbjct: 186 YREEAAVRHALLRRTMQAWTKAWESTPRGSELKAINTLRVGETVRLYKHL---PRDQVSI 242
Query: 388 ICRLRIGHSHLTHNFLLKREDP---PLCEWCNVQLSIQHILLECRKFRASRNK 437
+ ++R G + T+++L KR+ P C+ C + H+L+ CRK R K
Sbjct: 243 LAQIRTGPAS-TNSYLKKRKVPGKTGKCDRCGSREDRLHLLV-CRKLALPRRK 293
>gi|407915231|gb|EKG08948.1| hypothetical protein MPH_14100 [Macrophomina phaseolina MS6]
Length = 375
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 44/284 (15%)
Query: 200 YTDGSKTAANSGCA-YITETESQVFKLYNENSVFS-------SELLAIFMLLSHICNTRS 251
+TDGS G Y T S ++E S +EL AI ++ I
Sbjct: 52 FTDGSARNGRVGIGIYCTGGASATVIEHSETLGSSEKIDNHLAELEAIRQAVALIDQAWP 111
Query: 252 RPEYIFR------DSVFICTDSKSSLLALKNIMSPNHLVNNILVK-----INELKILNI- 299
+ E I R V C DSKS AL++++ P +++K +++++ +
Sbjct: 112 QREIIARPIAARVKHVIYC-DSKS---ALQSLLRPRQRSGQVVLKQILETLDKMQRRKVP 167
Query: 300 TVKFLWIPSHLGIAGNVQVDELAKNS--------QNAPLLSMMTSEDLKSAIKKKLLSEW 351
V+ W+P+H G+ GN + ++LA + + L + D+K AI + E
Sbjct: 168 VVQLRWVPAHAGVPGNERANKLALQATEPDKALPDSGVRLKSVALADVKRAISRAWAKEL 227
Query: 352 HLHWKNNVINNKLRRIKEDTLLWKSS---FDK-DRRKEIVICRLRIGHSHLTHNF-LLKR 406
+ + +L R + L + +DK + + VI +LR S L + ++R
Sbjct: 228 -----DGIKEGRLARTLDRALSQNHTRKLYDKLNAAEAAVIAQLRTSRSRLNESLHKIRR 282
Query: 407 EDPPLCEWCNVQLSIQHILLECRKFRASRNKWHLKDDISALLGD 450
D C + + +H LLEC ++ S + L+ + GD
Sbjct: 283 VDSSRCACGRGEETAKHFLLECTRW--SEQRAELQRAVGKRFGD 324
>gi|344311707|gb|AEN04376.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L S PE
Sbjct: 441 YVDG---AANRDTKLGKAGYVTDKGRQKIVALNETTNQKAELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 493 ------VNIVTDSQYALGIIQ--AQPDKSDSEIVTQIIEQLITKERVYLSWVPAHKGIGG 544
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 545 NEQVDKL 551
>gi|130596|sp|P03371.1|POL_EIAVY RecName: Full=Pol polyprotein; Contains: RecName: Full=Protease;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; Short=RT;
AltName: Full=Exoribonuclease H; Contains: RecName:
Full=Integrase; Short=IN
Length = 1145
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 69/172 (40%), Gaps = 26/172 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEI+Y V + + E + + YTDG K
Sbjct: 583 WEMQKGWYYSWLPEIVYT--------HQVVHDDWRMKLVEEPTSGITIYTDGGKQNGEGI 634
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AY+T K + +E +AI M L +TR + I DS + C + +
Sbjct: 635 AAYVTSNGRTKQKRLGPVTHQVAERMAIQMALE---DTRDKQVNIVTDSYY-CWKNITEG 690
Query: 272 LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ P + I+ I E +I V F W+P H GI GN DE AK
Sbjct: 691 LGLE---GPQNPWWPIIQNIREKEI----VYFAWVPGHKGIYGNQLADEAAK 735
>gi|395455217|gb|AFN61925.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI++ L +
Sbjct: 595 YVDGAASRDTKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 700 EQVDKLVSNG 709
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q +E + +EL AI++ L S
Sbjct: 595 YVDGAASRDTKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 632 VQV 634
QV
Sbjct: 700 EQV 702
>gi|331249489|ref|XP_003337361.1| hypothetical protein PGTG_18955 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 313
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 10/185 (5%)
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVD 319
+V I +D++ +L+ + P+ + + L+ L + V W P H GI N Q D
Sbjct: 72 AVAIFSDNQGALIRTADPSQPSPGQHLYADNFSSLRNLGLPVSLYWCPGHEGITANEQAD 131
Query: 320 ELAKNS---QNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVI----NNKLRRIKEDTL 372
++AK+ + S S + +++ K + + W + K R + D
Sbjct: 132 KMAKSEVQLSEKEITSTALSRQIPASLSKTKQNSKPM-WDRGPLLSPEEQKRFRFRPDPR 190
Query: 373 LWKSSFDKDRRK-EIVICRLRIGHSHLTHN-FLLKREDPPLCEWCNVQLSIQHILLECRK 430
++ ++ + I +LR H+ L H F +K+ P C C + S H L+ C+K
Sbjct: 191 PIIAALEEQAKGITATILQLRADHAPLNHFLFKIKQVLDPRCTNCLERESAPHFLMFCKK 250
Query: 431 FRASR 435
+R R
Sbjct: 251 YRTIR 255
>gi|116205996|ref|XP_001228807.1| hypothetical protein CHGG_02291 [Chaetomium globosum CBS 148.51]
gi|88182888|gb|EAQ90356.1| hypothetical protein CHGG_02291 [Chaetomium globosum CBS 148.51]
Length = 1154
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 831 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 890
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ K LA++ R++
Sbjct: 891 GAFKSTPIRNLETETWVPPLDLYLKKRLADFENRLQ 926
>gi|363583985|gb|AEW27541.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI++ L +
Sbjct: 595 YVDGAASRDTKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 700 EQVDKLVSNG 709
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q +E + +EL AI++ L S
Sbjct: 595 YVDGAASRDTKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 632 VQV 634
QV
Sbjct: 700 EQV 702
>gi|83656823|gb|ABC39618.1| pol protein [Human immunodeficiency virus 2]
Length = 1032
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + SEL A M L T S P+ I
Sbjct: 620 YTDGSCNRQSKEGKAGYVTDRGRDKVKVLEQTTNQQSELEAFAMAL-----TDSGPKANI 674
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 675 IVDSQYVM-----GIVAGQPTESENKIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 725
Query: 317 QVDEL 321
+VD L
Sbjct: 726 EVDHL 730
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + Y+T+ K+ + + SEL A M L+ S I
Sbjct: 620 YTDGSCNRQSKEGKAGYVTDRGRDKVKVLEQTTNQQSELEAFAMALTD----SGPKANII 675
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 676 VDSQYVM-----GIVAGQPTESENKIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQE 726
Query: 634 VPFL 637
V L
Sbjct: 727 VDHL 730
>gi|116191581|ref|XP_001221603.1| hypothetical protein CHGG_05508 [Chaetomium globosum CBS 148.51]
gi|88181421|gb|EAQ88889.1| hypothetical protein CHGG_05508 [Chaetomium globosum CBS 148.51]
Length = 564
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 241 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 300
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ TR++
Sbjct: 301 GAFKSTPIRNLETETWVPPLDLYLNKRLADFETRLQ 336
>gi|451170584|gb|AGF32978.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q E + +EL AI++ L S PE
Sbjct: 597 YVDGAASKETKQGKAGYVTNRGKQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 648
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 649 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|284192167|gb|ADB82803.1| pol protein [Simian immunodeficiency virus]
Length = 743
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYIT-ETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYI 256
Y DG+ +T+ YIT +S+V L E + +EL AI + L S P
Sbjct: 452 YVDGAANRTSKLGKAGYITARNKSKVVAL-EETTNQKAELEAIKLALQD-----SGP--- 502
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
V I TDS+ +L L SP+ N I+ +I EL I V W+P+H GI GN
Sbjct: 503 ---RVNIVTDSQYALGIL--TASPDQSDNPIVREIIELMIGKEGVYLGWVPAHKGIGGNE 557
Query: 317 QVDEL 321
QVD+L
Sbjct: 558 QVDKL 562
>gi|83773851|dbj|BAE63976.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|83776055|dbj|BAE66174.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|83776057|dbj|BAE66176.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1255
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 781 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 836
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 837 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 896
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 897 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 947
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 948 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 996
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 997 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1049
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1050 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1109
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1110 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1161
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1162 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1203
>gi|307194212|gb|EFN76629.1| hypothetical protein EAI_07164 [Harpegnathos saltator]
Length = 110
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 223 FKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNH 282
+ L + NSVF +E AI L I ++ + I DS+ + T S +K P
Sbjct: 13 YHLSDFNSVFEAESFAILHTLVAISDSNCKKAVIASDSLSVLTFFNSP--DIKGKYHP-- 68
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
LV + I+ L + NIT+ F+WIP H I GN VD LAK
Sbjct: 69 LVYMMRDIIHNLYLQNITIAFIWIPEHHNIPGNEAVDLLAK 109
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 539 FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNH 598
+ L + NSVF +E AI L I ++ + I DS+ + T S +K P
Sbjct: 13 YHLSDFNSVFEAESFAILHTLVAISDSNCKKAVIASDSLSVLTFFNSP--DIKGKYHP-- 68
Query: 599 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFL 637
LV + I+ L + NIT+ F+WIP H I GN V L
Sbjct: 69 LVYMMRDIIHNLYLQNITIAFIWIPEHHNIPGNEAVDLL 107
>gi|242779688|ref|XP_002479439.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
gi|218719586|gb|EED19005.1| hypothetical protein TSTA_023400 [Talaromyces stipitatus ATCC
10500]
Length = 153
Score = 48.1 bits (113), Expect = 0.014, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 26/163 (15%)
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLK-- 340
++ +I K +EL+ + V WIP+H GI GN + D AK + L+ +
Sbjct: 7 ILGSIAEKWDELRSQGVQVTIHWIPAHQGIEGNERADIAAKEATGWRLVQNNRGRQVPLD 66
Query: 341 -SAIKKKLLSEWHLHWKNNVINNKLRRIKED--TLLWKSSFDKDRRKEIVICRLRIGHSH 397
++ +L+ + L +K D TL +K ++ ++R G+
Sbjct: 67 MNSTAPRLVG----------LQQPLLALKRDLKTLAYKQPLSS------ILTQMRTGNIS 110
Query: 398 LTHNFLLKREDPPL----CEWCNVQLSIQHILLECRKFRASRN 436
L H FL KR+ P + C+ ++ HILL C +F+ RN
Sbjct: 111 LRH-FLYKRKIPGIDNGECQCQRGAQTVTHILLSCPRFKEERN 152
>gi|410131097|gb|AFV61764.1| pol protein [Equine infectious anemia virus]
Length = 1135
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 37/235 (15%)
Query: 91 RKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRISAQVI 150
+KI+ AN G N + L+L H +I R + T K Q+ + +
Sbjct: 526 KKIMKANKGRSTVKN----LMLLLQHVAT-ESITRIGICPTFKVPFTKEQV-----SWEM 575
Query: 151 KRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAF-FQFKGENQNSLFCYTDGSKTAAN 209
K+ Y + W +PEIIY SS V + + + E + + YTDG K
Sbjct: 576 KKGWYYS-W---LPEIIY---------SSQVVHDEWKLKLVEEPTSGITIYTDGGKQNGR 622
Query: 210 SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKS 269
AY+T T K + +E++AI M L + + I DS + C + +
Sbjct: 623 GVAAYVTSTGKTKQKQLGPVTHQRAEMIAIQMALEDYNDKQLN---IVTDSYY-CWKNIT 678
Query: 270 SLLALKNIMSPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAK 323
L L+ SP ++ NI K T+ F W+P H GI GN DE K
Sbjct: 679 EGLGLEGPDSPWWPIIQNIYNKE--------TIYFAWVPGHKGIYGNQLADEATK 725
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 23/155 (14%)
Query: 479 VPEIIYLTSEKKENLSSVAVKNAF-FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQ 537
+PEIIY SS V + + + E + + YTDG K AY+T T
Sbjct: 584 LPEIIY---------SSQVVHDEWKLKLVEEPTSGITIYTDGGKQNGRGVAAYVTSTGKT 634
Query: 538 VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPN 597
K + +E++AI M L + + I DS + C + + L L+ SP
Sbjct: 635 KQKQLGPVTHQRAEMIAIQMALEDY---NDKQLNIVTDSYY-CWKNITEGLGLEGPDSPW 690
Query: 598 -HLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
++ NI K T+ F W+P H GI GN
Sbjct: 691 WPIIQNIYNKE--------TIYFAWVPGHKGIYGN 717
>gi|407735074|gb|AFU28564.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735054|gb|AFU28548.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735044|gb|AFU28540.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735034|gb|AFU28532.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|427797723|gb|JAA64313.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 911
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K +A+ +L+ L+NK GL R L+ ++ ++RPI+++G V++ A + L +
Sbjct: 751 KGARAVGMLRRLSNKRSGLRRDVLVMIYCMYIRPILEFGCVLFSGAPAYKVRPLVLLECE 810
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQ 118
+LR+ G + LY E+ P L R I+ ++ +P + + Q
Sbjct: 811 SLRLCLGLPKFVANNILYEESCLPCLIKRFHIVTVRTFLKIYSSPQRRSQYVFINEQ 867
>gi|407735039|gb|AFU28536.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735069|gb|AFU28560.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735064|gb|AFU28556.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407735079|gb|AFU28568.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407735084|gb|AFU28572.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|407735059|gb|AFU28552.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 593 YVDGAASRETKQGKAGYVTNKGRQKVVCLTETTNQKTELHAIYLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|51980231|gb|AAU20784.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L SRPE
Sbjct: 595 YVDG---AANRETKLGKAGYVTDKGKQKVITLTETTNQKAELQAIQLALQD-----SRPE 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ PN + ++ +I E I V W+P+H GI G
Sbjct: 647 ------VNIVTDSQYALGIIQ--AQPNKSESELVNQIIEQLIKKEKVYLSWVPAHKGIGG 698
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 699 NEQVDKL 705
>gi|317141336|ref|XP_003189359.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1679
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1205 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 1260
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1261 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 1320
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 1321 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 1371
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 1372 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 1420
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 1421 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1473
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1474 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1533
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1534 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1585
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1586 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1627
>gi|427779129|gb|JAA55016.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 652
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 200 YTDGSKTAANSGCAYI--------TETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
YTD S A C Y ET + L+ N V S E+++I L + S
Sbjct: 381 YTDASFVAPRGSCGYAIYHPQLSAPETHTSGPYLHPPN-VLSLEVISIVHALESFSSLAS 439
Query: 252 RPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
PEY I +S +++ ++N P+ L + ++ L+ TV W+P H G
Sbjct: 440 VPEYT------IXXNSYAAIRHIQNRTLPHSLEQEVERAVSALQ--PSTVFLRWVPGHSG 491
Query: 312 IAGNVQVDELAKNS-QNAPLLSMMT-SEDLKSAIK 344
I GN LA++ AP + T SED S++K
Sbjct: 492 IDGNELAHRLARDILHRAPFIPWPTPSEDSGSSVK 526
>gi|363584180|gb|AEW27703.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI++ L +
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKVVSLTETTNQKSELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESEMVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|242818213|ref|XP_002487072.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
gi|218713537|gb|EED12961.1| hypothetical protein TSTA_054710 [Talaromyces stipitatus ATCC
10500]
Length = 216
Score = 48.1 bits (113), Expect = 0.015, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 40/190 (21%)
Query: 282 HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS-----------QNAPL 330
++ +I K +EL+ + V WIP+H GI GN + D AK + + PL
Sbjct: 29 QILGSIAEKWDELRSQGVQVTIHWIPAHQGIEGNERADIAAKEATGWRLVQNNRGRQVPL 88
Query: 331 LSMMTSEDLK------SAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRK 384
T+ L SA+K+ L + L +K N + + TL DK +K
Sbjct: 89 DMDSTAPRLVGLQQPLSALKRDLKT---LAYKQWEQNWQQNQQGR-TLF--RVVDKPSKK 142
Query: 385 EI------------VICRLRIGHSHLTHNFLLKREDPPL----CEWCNVQLSIQHILLEC 428
I ++ ++R G+ L H FL KR+ P + C+ ++ HILL C
Sbjct: 143 NIELHTRLSRPLSSILTQMRTGNISLRH-FLYKRKIPGIDNGECQCQRGAQTVTHILLSC 201
Query: 429 RKFRASRNKW 438
+F+ RN W
Sbjct: 202 PRFKEERNAW 211
>gi|451167739|gb|AGF30506.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKIASLSETTNQKAELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKERVYLSWVPAHKGIGGNEQ 698
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 699 VDKLVSNG 706
>gi|195409358|gb|ACF95931.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 595 YVDGAAXRETKXGKAGYVTDKGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 ---VNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIKKEXVYLSWVPAHKGIGGNEQ 701
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 702 VDKLVSNG 709
>gi|237874792|gb|ACR27159.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI + L S PE
Sbjct: 595 YVDGASSKETKRGNAGYVTDRGRQKVVSLTETTNQKAELQAIQLALQD-----SGPE--- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I + W+P+H GI GN
Sbjct: 647 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IQKEKIYLSWVPAHKGIGGN 699
Query: 316 VQVDEL 321
QVD+L
Sbjct: 700 EQVDKL 705
>gi|427798283|gb|JAA64593.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 740
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGA 41
K LK +NILKVL+ TWG + CL+ L+ + +R +DYGA
Sbjct: 701 KCLKTMNILKVLSRTTWGSDKKCLMNLYKSLIRTRLDYGA 740
>gi|407733000|gb|AFU26809.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYVLGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 593 YVDGAASRETKQGKAGYVTDRGRQKIISLNETTNQQTELHAIYLALQDSGS--------- 643
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 --EVNIVTDSQYVLGVIQ--AQPDRSESEVVSQIIEELIRKEKVYLSWVPAHKGIGGNEQ 699
Query: 634 V 634
V
Sbjct: 700 V 700
>gi|306478007|gb|ADM89378.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN G Y+T+ Q + + +EL AI++ L +
Sbjct: 441 YVDG---AANRETKLGGAGYVTDRGRQKVISLTDTTNQKTELQAIYLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + + +I E I V W+P+H GI G
Sbjct: 492 -----EVNIVTDSQYALGIIQ--AQPDQSESETVSQIIEQLIKKEKVYLAWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|77416900|sp|P05962.3|POL_HV2NZ RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1461
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + YIT+ K+ + + +EL A M L T S P+ I
Sbjct: 1049 YTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAFAMAL-----TDSGPKANI 1103
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 1104 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 1154
Query: 317 QVDEL 321
+VD L
Sbjct: 1155 EVDHL 1159
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + YIT+ K+ + + +EL A M L+ S I
Sbjct: 1049 YTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAFAMALTD----SGPKANII 1104
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 1105 VDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQE 1155
Query: 634 VPFL 637
V L
Sbjct: 1156 VDHL 1159
>gi|116205405|ref|XP_001228513.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
gi|88176714|gb|EAQ84182.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
Length = 1437
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 1215 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 1274
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ TR++
Sbjct: 1275 GAFKSTPIRNLETETWVPPLDLYLNKRLADFETRLQ 1310
>gi|5059042|gb|AAD38882.1|AF119819_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 200 YTDGSKT-AANSGCA-YITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + N G A Y+T+ Q E + +EL AI++ L +
Sbjct: 595 YVDGAASRETNQGKAGYVTDRGRQKVITLPETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + K S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAMGIIQAKPDKSESDLVNQIIEQL----IQKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 700 EQVDKLVSNG 709
>gi|317148708|ref|XP_003190229.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1646
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1172 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 1227
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1228 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 1287
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 1288 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 1338
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 1339 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 1387
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 1388 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1440
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1441 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1500
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1501 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1552
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1553 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1594
>gi|317147694|ref|XP_003189943.1| reverse transcriptase [Aspergillus oryzae RIB40]
gi|317159428|ref|XP_001827307.2| reverse transcriptase [Aspergillus oryzae RIB40]
gi|317159432|ref|XP_001827309.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1676
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1202 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 1257
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1258 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 1317
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 1318 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 1368
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 1369 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 1417
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 1418 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1470
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1471 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1530
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1531 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1582
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1583 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1624
>gi|1332360|gb|AAB00755.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 961
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + YIT+ K+ + + +EL A M L T S P+ I
Sbjct: 549 YTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAFAMAL-----TDSGPKANI 603
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 604 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 654
Query: 317 QVDEL 321
+VD L
Sbjct: 655 EVDHL 659
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + YIT+ K+ + + +EL A M L+ S I
Sbjct: 549 YTDGSCNRQSKEGKAGYITDRGRDRVKVLEQTTNQQAELEAFAMALT----DSGPKANII 604
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 605 VDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQE 655
Query: 634 VPFL 637
V L
Sbjct: 656 VDHL 659
>gi|317156331|ref|XP_003190713.1| reverse transcriptase [Aspergillus oryzae RIB40]
gi|317159444|ref|XP_003191071.1| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1679
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1205 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 1260
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1261 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 1320
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 1321 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 1371
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 1372 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 1420
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 1421 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1473
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1474 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1533
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1534 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1585
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1586 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1627
>gi|328834294|gb|AEB52719.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI++ L +
Sbjct: 597 YVDG---AANRETKLGKAGYVTDKGRQKVVSLNETTNQKTELHAIYLALQDSGS------ 647
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 648 -----EVNIVTDSQYALGIIQ--AQPDRSESELVSQIIEQLIKKEKVYLSWVPAHKGIGG 700
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 701 NEQVDKLVSNG 711
>gi|5106564|gb|AAD39753.1|AF131870_2 Pol protein [Simian immunodeficiency virus]
Length = 1027
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 77/174 (44%), Gaps = 19/174 (10%)
Query: 175 ENLSSVAVKNAFFQFKGENQNSLFCYTDGS--KTAANSGCAYITET-ESQVFKLYNENSV 231
E +S+ ++ ++ E Y DG+ K YIT+ S+V KL N +
Sbjct: 599 EFVSTPKLEQEWYTLATEPVPGDTYYVDGAAEKLEKRGKAGYITQGGRSRVKKLENTTNQ 658
Query: 232 FSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKI 291
+EL AI M L R SV I TDS+ +L L P + ++ +I
Sbjct: 659 -QAELEAIKMALED-----------SRSSVNIVTDSQYALRLLSK--RPTETDSELVKEI 704
Query: 292 NELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKK 345
EL V W+P+H GI GN ++D+L SQ +M E ++ A+++
Sbjct: 705 VELIRQKDQVYLGWVPAHKGIGGNQEIDQLV--SQGIRKRQVMFIEKIEPAVEE 756
>gi|358376403|dbj|GAA92959.1| reverse transcriptase [Aspergillus kawachii IFO 4308]
Length = 136
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 230 SVFSSELLAIFM---LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVN- 285
SV+++ELLAI+ L+ H+ R I +DS S+L + N + ++ N
Sbjct: 5 SVYAAELLAIYYAIGLVFHLAQKSPAAATTTRGPATILSDSMSALQVIANSWNKSNQRNI 64
Query: 286 -NILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS----QNAPLLSMMTSEDLK 340
I ELK I ++F W+P G GN LA+ + + P +++ E K
Sbjct: 65 QAIHQSAGELKPREIPLRFQWVPGPCGDPGNDTAARLAEEAAGLEKKHPFRRLLSHE--K 122
Query: 341 SAIKKKLLSEW 351
I+ K+ EW
Sbjct: 123 KHIRNKISKEW 133
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFM---LLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMSPNHLVN- 601
SV+++ELLAI+ L+ H+ S R I +DS S+L + N + ++ N
Sbjct: 5 SVYAAELLAIYYAIGLVFHLAQKSPAAATTTRGPATILSDSMSALQVIANSWNKSNQRNI 64
Query: 602 -NILVKINELKILNITVKFLWIPSHLGIAGN 631
I ELK I ++F W+P G GN
Sbjct: 65 QAIHQSAGELKPREIPLRFQWVPGPCGDPGN 95
>gi|409180081|gb|AFV26109.1| pol protein, partial [Simian immunodeficiency virus]
Length = 939
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL A M L T S P+ I
Sbjct: 603 YTDGSCNRQSKEGKAGYVTDRGKDRVKVLEQTTNQQAELEAFLMAL-----TDSGPKANI 657
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H G+ GN
Sbjct: 658 IVDSQYVM-----GIVAGQPTESENKIVNQII----EEMIKKTAIYVAWVPAHKGLGGNQ 708
Query: 317 QVDEL 321
+VD L
Sbjct: 709 EVDHL 713
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + Y+T+ K+ + + +EL A M L+ S I
Sbjct: 603 YTDGSCNRQSKEGKAGYVTDRGKDRVKVLEQTTNQQAELEAFLMALTD----SGPKANII 658
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H G+ GN +
Sbjct: 659 VDSQYVM-----GIVAGQPTESENKIVNQII----EEMIKKTAIYVAWVPAHKGLGGNQE 709
Query: 634 VPFL 637
V L
Sbjct: 710 VDHL 713
>gi|392498842|gb|AFM75690.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
RP+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 RPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|374349627|gb|AEZ35440.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 992
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L S PE
Sbjct: 585 YVDG---AANRETKLGKAGYVTDRGRQKAVSLTETTNQKTELHAIYLALQD-----SGPE 636
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 637 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGG 688
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 689 NEQVDKLVSNG 699
>gi|1732476|gb|AAB38824.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 1026 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQD-----SGPE--- 1077
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++I+ +I E I V W+P+H GI GN Q
Sbjct: 1078 ---VNIVTDSQYALGIIQ--AQPDRSESDIVNQIIEKLIEKEKVYLSWVPAHKGIGGNEQ 1132
Query: 318 VDEL 321
VD+L
Sbjct: 1133 VDKL 1136
>gi|317156047|ref|XP_001825109.2| reverse transcriptase [Aspergillus oryzae RIB40]
Length = 1779
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 100/464 (21%), Positives = 179/464 (38%), Gaps = 71/464 (15%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1305 KGLEAVMELRRLR----GLSPSTARQLFTSTVTPVVDYASNVWMHAFKNKATGPINRVQR 1360
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1361 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRNTARIKK 1420
Query: 120 GRNINRANLPRTVKS----RLEDLQIFDRISAQVIKRDEYIAPWEL-------SVPEIIY 168
R +R+ L + + +E L+ + + +APWE ++P+
Sbjct: 1421 FRRFHRSPLYQVADALKNIEMETLETINPFT---------LAPWEARMQTDGEAMPDPQA 1471
Query: 169 LTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+ + S + +N F F + Y +T S +E
Sbjct: 1472 IPGGSIQIAISSSARNGFVGFGVAIEKQPPQYRK-----------LKLKTFSVTLGARSE 1520
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNN 286
+ FS+EL AI L+ + + + FR + T +K++ L ++N S V
Sbjct: 1521 QNPFSAELAAIAHTLNRLVGLKG---FRFR----LLTSNKATALTIQNPRQQSGQEFVCQ 1573
Query: 287 ILVKINELKILNITVKFLWIPSH-----LGIAGNVQVDELAKNSQNAPLLSMMTSEDL-- 339
+ IN L+ +K LW+P+ LG+A +++ +S M S L
Sbjct: 1574 MYKLINRLRRKGNHIKILWVPASEDNKLLGLAKEQARAATHEDAIPQAQVSRMKSTTLNL 1633
Query: 340 ---KSAIKKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIG 394
++A K L + H K + + K R D L WK + V+ +LR G
Sbjct: 1634 ARSQAATTKALPEDVGRHIKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTG 1685
Query: 395 HSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
+ L N L R + + C + +++H L CRK+ R
Sbjct: 1686 MARL--NGYLYRINVAQTDQCACGQARETVEHFLFRCRKWTTQR 1727
>gi|77416895|sp|P24107.3|POL_HV2CA RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL A M L T S P+ I
Sbjct: 1050 YTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAMAL-----TDSGPKANI 1104
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 1105 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 1155
Query: 317 QVDEL 321
+VD L
Sbjct: 1156 EVDHL 1160
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + Y+T+ K+ + + +EL A M L+ S I
Sbjct: 1050 YTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAMALTD----SGPKANII 1105
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 1106 VDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQE 1156
Query: 634 VPFL 637
V L
Sbjct: 1157 VDHL 1160
>gi|32399667|emb|CAD59562.1| gag-pol fusion protein [Human immunodeficiency virus 1]
Length = 1437
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + + +EL AI + L S PE
Sbjct: 1030 YVDG---AANRETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAINLALQD-----SGPE 1081
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I EL I V W+P+H GI G
Sbjct: 1082 ------VNIVTDSQYALGIIQ--AQPDKSESEVVSQIIELLIKKEKVYLAWVPAHKGIGG 1133
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 1134 NEQVDKL 1140
>gi|2160333|dbj|BAA00710.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL A M L T S P+ I
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAMAL-----TDSGPKANI 677
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 678 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 728
Query: 317 QVDEL 321
+VD L
Sbjct: 729 EVDHL 733
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + Y+T+ K+ + + +EL A M L+ S I
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKVKILEQTTNQQAELEAFAMALTD----SGPKANII 678
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 679 VDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQE 729
Query: 634 VPFL 637
V L
Sbjct: 730 VDHL 733
>gi|90903144|gb|ABE02157.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K YIT+ Q E + +EL AI++ L +
Sbjct: 595 YVDGAANKETKLGKAGYITDKGKQKVITIQETTNQKTELHAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYALGIIQAQPDRSESELVNQIIEQL----IKKEKVYLTWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 700 EQVDKLVSNG 709
>gi|156041060|ref|XP_001587516.1| hypothetical protein SS1G_11509 [Sclerotinia sclerotiorum 1980]
gi|154695892|gb|EDN95630.1| hypothetical protein SS1G_11509 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 717
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 93/219 (42%), Gaps = 34/219 (15%)
Query: 200 YTDGSKTAANS----GCAYI-----TETESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
++DGS+ + G Y T+ + ++++++ VF +E + + L H+ +T
Sbjct: 363 FSDGSEQTIDRKHHVGYGYAIYRNGTQIATGYKQIHSDSHVFDAEAIGAWRGLEHLISTL 422
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINE-LKILNITVKFLWIPSH 309
+ P +++C DS S + ++ P K ++ ++ LNI VK W P H
Sbjct: 423 AGPP---NGRIWMCIDSTSVIWGMRGDAPPT--SQWAFHKCHKAIRQLNIRVK--WSPGH 475
Query: 310 LGIAGNVQVDELAKNSQNAPLLS----MMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR 365
+ I GN + D LA P+ + T +++ +KK L W VI +
Sbjct: 476 MEIEGNEEADRLANAGAVGPMDQAADKLPTISGVRTIFRKKCLRA-ETDWWKEVIASLSS 534
Query: 366 RIKEDTLLWKSSFDKDRRKEIVICR--------LRIGHS 396
K+ W +++ KE+ + R ++ GH
Sbjct: 535 SYKK----WSPNYNTKEPKELALPRGVLHRLLAMKTGHG 569
>gi|116207482|ref|XP_001229550.1| hypothetical protein CHGG_03034 [Chaetomium globosum CBS 148.51]
gi|88183631|gb|EAQ91099.1| hypothetical protein CHGG_03034 [Chaetomium globosum CBS 148.51]
Length = 1457
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 1290 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 1349
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 1350 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 1385
>gi|373881363|gb|AEY78012.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI + L +
Sbjct: 540 YVDGAANRENKIGKAGYVTDRGRQKIITLTETTNQKTELQAICLALXDSGS--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ EL I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQII----ELLIXKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 516 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ N Y+T+ Q E + +EL AI + L S
Sbjct: 540 YVDGAANRENKIGKAGYVTDRGRQKIITLTETTNQKTELQAICLALXDSGS--------- 590
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I+ EL I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQII----ELLIXKERVYLSWVPAHKGIGGN 644
Query: 632 VQV 634
QV
Sbjct: 645 EQV 647
>gi|339507461|gb|AEJ81142.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +T
Sbjct: 537 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGST----- 588
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 589 ------VNIVTDSQYALGIIQ--AQPDRSESEIINQIIEKLIEKEKVYLSWVPAHKGIGG 640
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 641 NEQVDKLVSNG 651
>gi|427782541|gb|JAA56722.1| Putative tick transposon [Rhipicephalus pulchellus]
Length = 636
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 260 SVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN--VQ 317
S + TDS+ +L L L +I+ ++ ++ L + W+P+H+GI GN
Sbjct: 417 SAAVITDSRPALQLLARGYRGPPLAKSIVRRLEAVQDLGCDLILQWVPAHIGIPGNEAAD 476
Query: 318 VDELAKNSQNAPLLSMMTSEDL-KSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKS 376
A ++ P + ++ D+ +S I + + S H V ++ R T L
Sbjct: 477 ALAKAAHAAETPTTTAISCFDVARSRIARSVASR---HPDARVAASEPPRPLPRTGLA-- 531
Query: 377 SFDKDRRKEIVICRLRIGHSHLTHNF-LLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
RR + RLR+G L E P C C ++ HILL C + R
Sbjct: 532 -----RRARAFLLRLRMGVPRTAERLHRLTGEGDPSCPHCPEPETLAHILLSCAAYSEER 586
Query: 436 N 436
Sbjct: 587 R 587
>gi|58220881|gb|AAW68071.1| pol protein [Human immunodeficiency virus 1]
Length = 775
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 604 YVDGAANRETKKGKAGYVTDKGRQKIVSLSETTNQKTELQAIQLALQD-----SGPE--- 655
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 656 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKEKVYLSWVPAHKGIGGN 708
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 709 EQVDKLVSNG 718
>gi|427792977|gb|JAA61940.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1311
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 22/259 (8%)
Query: 184 NAFFQFKGENQNSLFCYTDGS----KTAANSGCAYITETESQVFKLYNENSVFSSELLAI 239
+A + + + L +TDGS +A + C + + +L S ++EL +
Sbjct: 1022 SAVAKLRERLRGHLLVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGL 1081
Query: 240 FMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI 299
+ H+ T P + V I DS+ +L AL V + K+ + +
Sbjct: 1082 HLAADHLAAT---PPQL---PVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGV 1135
Query: 300 TVKFLWIPSHLGIAGNVQVDELAKNSQNA--PLLSMMTSEDLKSAIKKKLLSEWHLHWKN 357
+ W+PSH+GIAGN + D AK + + P+ + D ++LL H
Sbjct: 1136 HLSLHWLPSHVGIAGNEEADAAAKAAHHGDTPVTKAVAQSDYSRQRLRQLLPT--AHPDT 1193
Query: 358 NVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHS-HLTHNFLLKREDPPLCEWCN 416
V + K +T L DR + ++ RLR G + + R P C C
Sbjct: 1194 RVASGKPPPPLPETGL-------DRCERRLLLRLRTGSAWPAARMYATGRCSSPACRRCG 1246
Query: 417 VQLSIQHILLECRKFRASR 435
+++HI+ C A R
Sbjct: 1247 DDETLEHIICSCPALAAER 1265
>gi|63098296|gb|AAY32348.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q E + +EL AI + L S PE
Sbjct: 599 YVDGAANKETKKGKAGYVTDRGRQKIVSLAETTNQKTELQAIQLALQD-----SGPE--- 650
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 651 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 703
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 704 EQVDKLVSNG 713
>gi|116191631|ref|XP_001221628.1| hypothetical protein CHGG_05533 [Chaetomium globosum CBS 148.51]
gi|88181446|gb|EAQ88914.1| hypothetical protein CHGG_05533 [Chaetomium globosum CBS 148.51]
Length = 337
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L + KTWGL A ++ +R + YGA + G + ++ L V +
Sbjct: 8 LSRIAAKTWGLGLAKAREVYTKCIRSALAYGASSFHIPTDVEGEPVKKGITGALGKVQNK 67
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GA++ +PI +L E PPL+ LA++ TR++
Sbjct: 68 SLRIVAGAFKATPIRNLETETWVPPLDLYFNKRLADFETRLQ 109
>gi|116214415|ref|XP_001230218.1| hypothetical protein CHGG_11048 [Chaetomium globosum CBS 148.51]
gi|88175403|gb|EAQ82872.1| hypothetical protein CHGG_11048 [Chaetomium globosum CBS 148.51]
Length = 943
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 612 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 671
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 672 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 707
>gi|212383243|gb|ACJ25911.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q E + +EL AI + L S PE
Sbjct: 599 YVDGAANKETKKGKAGYVTDRGRQKIVSLAETTNQKTELQAIQLALQD-----SGPE--- 650
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 651 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 703
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 704 EQVDKLVSNG 713
>gi|353244253|emb|CCA75678.1| hypothetical protein PIIN_09668 [Piriformospora indica DSM 11827]
Length = 626
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 117/306 (38%), Gaps = 57/306 (18%)
Query: 54 KLNTVYHTALRIISGAYRTSPIESLYAE-NGQPPLETRRKILLANYGTRVKCNPSNPVSL 112
KL V A I+GA RT+ ++L A N P ET R + ++P+S
Sbjct: 317 KLQAVQRRAAISITGAIRTTAGDTLDAHLNMLPIKETLRLTCQKAAAQQASLPATHPLSK 376
Query: 113 ILTHAQLGRNINRANLP-----RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEII 167
+ A G + R N P ++ S+++DL+ S P+ +S+ E
Sbjct: 377 FVKRASRGL-LQRHNAPLHRIFHSIDSKVDDLKTITPASCN----PNATNPFTISIEESR 431
Query: 168 YLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYI-----TETESQV 222
L E N + N + YTDGS G + S
Sbjct: 432 MLAKEVDNNSNG-------------NNERVVVYTDGSGMEGIIGAGAVLYRDRVRIRSAR 478
Query: 223 FKLY--NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--M 278
F L E++V EL+ I + + ++ E I + I D+++++ ++N+
Sbjct: 479 FLLGEDTEHTVHEGELVGIALGVQ-----LAKMERIIIPRIKISLDNQAAIQGMENVSAK 533
Query: 279 SPNHLVNNILVKINELKI-------------------LNITVKFLWIPSHLGIAGNVQVD 319
+ H+++ I I++L+ + + W+P H GI GN D
Sbjct: 534 AGQHIIHKIHRAIDKLRNNQKRRQELVEASDDETRINRSTQITLTWVPGHEGIEGNKAAD 593
Query: 320 ELAKNS 325
E AK +
Sbjct: 594 EEAKKA 599
>gi|392586550|gb|EIW75886.1| hypothetical protein CONPUDRAFT_169130 [Coniophora puteana
RWD-64-598 SS2]
Length = 265
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 28/192 (14%)
Query: 273 ALKNIMSP---NHLVNNI--LVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN 327
A+K+ SP ++LV I L + + ++ ++ V F W+ H GI GN + DE AKN+
Sbjct: 26 AVKDPSSPTPGHYLVPPIWRLARRLQTQLQDVGVVFTWLAGHRGIEGNERADEEAKNAAT 85
Query: 328 APLLS---MMTSEDLK-------SAIKKKLLSE----WHLHWKNNVINNKLRRIKEDTLL 373
+ + + L+ SA+K+K++++ W W ++LR + + +
Sbjct: 86 EGRQANGGRVLPKHLRGVLPASISALKQKMVADLKATWSQRWALAERAHRLRALGYNAVA 145
Query: 374 WKSSFDK----DRRKEIVICRLRIGHSHLTHNFL--LKREDPPLCEWC--NVQLSIQHIL 425
+ RR+ ++ LR H L FL ++ D P C+ C V +I+H L
Sbjct: 146 TDRHISQISALPRRQGTLLTHLRTRHIALD-AFLHRIRVIDDPSCKHCTRGVDETIRHYL 204
Query: 426 LECRKFRASRNK 437
EC + +R +
Sbjct: 205 FECPAWEEARRR 216
>gi|116194171|ref|XP_001222898.1| hypothetical protein CHGG_06803 [Chaetomium globosum CBS 148.51]
gi|88182716|gb|EAQ90184.1| hypothetical protein CHGG_06803 [Chaetomium globosum CBS 148.51]
Length = 1106
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY------GSATQSSLSKLNTVYHTAL 63
L L KTWG + A ++ +R + YGA + G + + +L + L
Sbjct: 750 LTRLAAKTWGCTFARAREIYSKVIRSAIAYGASAFHTPTEVGGPPRGAAKELAKIQSECL 809
Query: 64 RIISGAYRTSPIESLYAENGQPPLE 88
R+++GAY+ +PI SL E PP++
Sbjct: 810 RVVAGAYKATPIRSLETETYCPPID 834
>gi|238734253|gb|ACR55480.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI++ L S PE
Sbjct: 594 YVDGASNRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQD-----SGPE--- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I + W+P+H GI GN
Sbjct: 646 ---VNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKEKIYLSWVPAHKGIGGN 698
Query: 316 VQVDEL 321
QVD+L
Sbjct: 699 EQVDKL 704
>gi|313118840|gb|ADR32332.1| pol protein [Human immunodeficiency virus 2]
Length = 649
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL A M L T S P+ I
Sbjct: 539 YTDGSCNRQSKEGKAGYVTDRGRDRVKVLEQTTNQQAELEAFAMAL-----TDSGPKANI 593
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN
Sbjct: 594 IVDSQYVM-----GIVAGQPTESENXIVNQII----EEMIRKXAIYVAWVPAHKGIGGNQ 644
Query: 317 QVDEL 321
+VD L
Sbjct: 645 EVDHL 649
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + + Y+T+ K+ + + +EL A M L+ S I
Sbjct: 539 YTDGSCNRQSKEGKAGYVTDRGRDRVKVLEQTTNQQAELEAFAMALTD----SGPKANII 594
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H GI GN +
Sbjct: 595 VDSQYVM-----GIVAGQPTESENXIVNQII----EEMIRKXAIYVAWVPAHKGIGGNQE 645
Query: 634 VPFL 637
V L
Sbjct: 646 VDHL 649
>gi|409181631|gb|AFV26850.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YIDGAANRESKRGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDRSDSELVNQIIEKL----IGKDKVYLAWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|331232154|ref|XP_003328739.1| hypothetical protein PGTG_10040 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 407
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 132/362 (36%), Gaps = 73/362 (20%)
Query: 87 LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRIS 146
+ + + +LA+ GT NP L QL + R +E++QI
Sbjct: 47 FDCKLQCILASRGTNKDF--PNPKHAPLPQPQLAAFLERG---------VEEIQI----- 90
Query: 147 AQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGS-- 204
+Y P S P+ YL + ++ + A K A Q + YTDGS
Sbjct: 91 -------QYGGPAPPSRPQPTYLNLDMTKDEAIEATK-ALVQSSSLSDRHFLIYTDGSYD 142
Query: 205 KTAANSGCAYITETESQVFKLYNENSVFSS------------ELLAIFMLLSHICNTRSR 252
K +G A + V + + S+ ELL I +L S+
Sbjct: 143 KDKGGAGAAVCPSLDLAVSSALGVDPLISNHECETVGLILAFELLKIALLSSNFT----- 197
Query: 253 PEYIFRDSVFICTDSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
SV+I TD+K + KN + P + ++ + E +I + +W P H
Sbjct: 198 -------SVYILTDNKGVIQRTKNFGVPKPGQYLFFEILHLLEFTQRDIDLFLVWCPGHK 250
Query: 311 GIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLS---EWHLHWKNNVINNKLRRI 367
GI GN D LA + + + LK + K + + E+H L+
Sbjct: 251 GITGNEIADNLAAATTSR---NKTPDRRLKGNLSKAIRTFSAEFH-----QTPPKSLQSR 302
Query: 368 KEDTLLWKSSFDKDRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCNVQLSIQHILL 426
D + SS +I +L G S L H F KR P+C +C + + H
Sbjct: 303 ISDMPISHSS---------LINQLSSGASPLHQHLFKAKRRMDPICPFCPGRETTIHFFD 353
Query: 427 EC 428
C
Sbjct: 354 FC 355
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 17/172 (9%)
Query: 470 EYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGS--KTAANSG 527
+Y P S P+ YL + ++ + A K A Q + YTDGS K +G
Sbjct: 91 QYGGPAPPSRPQPTYLNLDMTKDEAIEATK-ALVQSSSLSDRHFLIYTDGSYDKDKGGAG 149
Query: 528 CAYITETESQVFKLYNENSVFSSE------LLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581
A + V + + S+ L+ F LL +S+ T S++I T
Sbjct: 150 AAVCPSLDLAVSSALGVDPLISNHECETVGLILAFELLKIALLSSNFT------SVYILT 203
Query: 582 DSKSSLLALKN--IMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
D+K + KN + P + ++ + E +I + +W P H GI GN
Sbjct: 204 DNKGVIQRTKNFGVPKPGQYLFFEILHLLEFTQRDIDLFLVWCPGHKGITGN 255
>gi|409181511|gb|AFV26742.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L +
Sbjct: 596 YVDG---AANRETRIGKAGYVTDRGRQKVVPLNETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NEQVDKLVSNG 710
>gi|170061766|ref|XP_001866378.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167879875|gb|EDS43258.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 392
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K L+ N L+ ++ WG + LLRL+ + +++YG+ + SA +S L L + +
Sbjct: 147 KCLQKTNFLRSVSGNRWGAHPSDLLRLYKTTILSVLEYGSFCFQSAAKSRLLVLQRIQYR 206
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETR 90
+LRI+ G ++ +L G PL TR
Sbjct: 207 SLRIVLGCMHSTHNMTLEVLAGVLPLRTR 235
>gi|57869553|gb|AAW57605.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI++ L +
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESGLVSQIIEKLIEKDKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + Y+T+ Q NE + +EL AI++ L S
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESGLVSQIIEKLIEKDKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|409180088|gb|AFV26114.1| pol protein, partial [Simian immunodeficiency virus]
Length = 828
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
YTDGS + Y+T+ K+ + + +EL A M L T S P
Sbjct: 527 YTDGSCNRQTKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFLMAL-----TDSGP---- 577
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
R ++ + + ++A + S N +VN I+ E I + W+P+H G+ GN +
Sbjct: 578 RANIIVDSQYVMGIVAGQPTESENKIVNQII----EEMIKKTAIYVAWVPAHKGLGGNQE 633
Query: 318 VDEL 321
VD L
Sbjct: 634 VDHL 637
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS + Y+T+ K+ + + +EL A M L+ S I
Sbjct: 527 YTDGSCNRQTKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFLMALT----DSGPRANII 582
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++A + S N +VN I+ E I + W+P+H G+ GN +
Sbjct: 583 VDSQYVM-----GIVAGQPTESENKIVNQII----EEMIKKTAIYVAWVPAHKGLGGNQE 633
Query: 634 VPFL 637
V L
Sbjct: 634 VDHL 637
>gi|260533754|gb|ACX45151.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAANSG-----CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN G Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRGTKIGKAGYVTDRGRQKVVSLTETTNQKTELYAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEKLIEKDKVYLSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 21/124 (16%)
Query: 516 YTDGSKTAANSG-----CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
Y DG AAN G Y+T+ Q E + +EL AI++ L S
Sbjct: 596 YVDG---AANRGTKIGKAGYVTDRGRQKVVSLTETTNQKTELYAIYLALQDSGS------ 646
Query: 571 YIFRDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 630
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEKLIEKDKVYLSWVPAHKGIGG 699
Query: 631 NVQV 634
N QV
Sbjct: 700 NEQV 703
>gi|77416896|sp|P17757.3|POL_HV2D1 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1462
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ ++ + S +EL A M L+ S P+ I
Sbjct: 1050 YTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAMALAD-----SGPKVNI 1104
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I V W+P+H GI GN
Sbjct: 1105 IVDSQYVM-----GIVAGQPTESENRIVNQII----EDMIKKEAVYVAWVPAHKGIGGNQ 1155
Query: 317 QVDEL 321
+VD L
Sbjct: 1156 EVDHL 1160
>gi|212532171|ref|XP_002146242.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210071606|gb|EEA25695.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 358
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 102/259 (39%), Gaps = 31/259 (11%)
Query: 200 YTDGSK-----TAANSGCAYITETESQVFKLYNENS--VFSSELLAIFMLLSHICNTRSR 252
++DGS+ T A + E + +L VF +EL+ + L
Sbjct: 34 WSDGSRQDNGRTGAGVALQIVPEAPWEHLELPMGTGFEVFDAELMGVASALEWAL----- 88
Query: 253 PEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
E + + D+++++ L++ + L + + L++ V W+P H
Sbjct: 89 -ERHLPGPIHVLLDAQNAIKRLQSTEPGAGQSLALRAHMAASRLRLSGRPVTIQWVPGHN 147
Query: 311 GIAGNVQVDE---LAKNSQNAPLLSMMTSEDLKSA---IKKKLLSEWHLHWKNNVINNKL 364
G+ GN Q D+ A + P ++ ++ A ++ + W + N +
Sbjct: 148 GVEGNEQADQAAKPAASKPAGPGFEGLSLAYVRRACTEARRAAVENWA---RENAVQGAH 204
Query: 365 RRIKEDTLLWKSSFDK-----DRRKEIVICRLRIGHSHL-THNFLLKREDPPLCEWCN-V 417
RR + + D+ +R +L+ GH+ + T+ +K D P C C +
Sbjct: 205 RRGRAYKMPRGWGLDRIGAKAPKRVASRYYQLKTGHAPIGTYLHRIKARDSPECRACGEL 264
Query: 418 QLSIQHILLECRKFRASRN 436
+ ++ HIL +CR R R
Sbjct: 265 RETVSHILFKCRGRRGPRR 283
>gi|38491480|gb|AAR21892.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI H+ SRPE
Sbjct: 595 YVDG---AANRETKLGKAGYVTDKGKQKIIALTETTNQKAELHAI-----HLALQDSRPE 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 647 ------VNIVTDSQYALGIIQAQPDRSESELVNQIIEQL----IKKEKVYLSWVPAHKGI 696
Query: 313 AGNVQVDEL 321
GN Q+D+L
Sbjct: 697 GGNEQIDKL 705
>gi|294889789|ref|XP_002772958.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877569|gb|EER04774.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 382
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 25/168 (14%)
Query: 200 YTDGSKTAANSGCAYITETESQV-----FKLYNENSVFSSELLAIFMLLSHICNTRSRP- 253
YTDGSK ++G A++ E +V FKL ++ EL AI L + + R
Sbjct: 197 YTDGSKFGDSAGGAFLAVKEGEVVERQAFKLERFATIHQCELEAIRRALRWLSYSAHRGI 256
Query: 254 EYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIA 313
E++ + TDS++S+ ++ + + I I L L++ V+ W P H G+
Sbjct: 257 EWL------LFTDSQASIRTIRGREATER--SAIARDIAHLS-LHVKVQLNWCPGHEGVQ 307
Query: 314 GNVQVDELAKNSQNA--PL---LSMMTSED-----LKSAIKKKLLSEW 351
N VD+LA + PL +MM LK+ ++K S W
Sbjct: 308 WNEAVDQLANTGRKQLFPLDRGAAMMVPPSYVKHMLKTQMEKDTRSWW 355
>gi|77416899|sp|Q74120.3|POL_HV2KR RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1463
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + YIT+ ++ + + +EL A M L T S P+ I
Sbjct: 1051 YTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAELEAFAMAL-----TDSGPKANI 1105
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + LVN I+ E I T+ W+P+H GI GN
Sbjct: 1106 IVDSQYVM-----GIVAGQPTESESKLVNQII----EEMIKKETLYVAWVPAHKGIGGNQ 1156
Query: 317 QVDEL 321
+VD L
Sbjct: 1157 EVDHL 1161
>gi|400602221|gb|EJP69823.1| reverse transcriptase [Beauveria bassiana ARSEF 2860]
Length = 319
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 65/284 (22%), Positives = 117/284 (41%), Gaps = 36/284 (12%)
Query: 18 WGLSRACLLRLFYAFVRPIMDYGA---VIYGSA----TQSSLSKLNTVYHTALRIISGAY 70
WG L +++ A + P M YG I GS S +S V A +II+GA+
Sbjct: 33 WGTGLMNLRQVYRAVIVPQMLYGCSAWFIPGSGCTSRGSSMISAFRNVQRRAAQIITGAF 92
Query: 71 RTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLP 129
RT+ ++ E P+ + + R++ P + +++I + + GR I+ A P
Sbjct: 93 RTTAGSAVDVEAHLLPVLQQLEQTAVETTVRIRTTPLFDDMAVIEGNRERGRPISDAVSP 152
Query: 130 -RTVKSRLEDLQIFDRISAQVIKRDEYIAP--WELSVPEIIYLTSEKKENLSSVAVKNAF 186
+ LED F Q+ KR ++ P W P I+ + E A
Sbjct: 153 LDRFSTLLEDK--FGIPPNQLEKRRPHVVPPWW---APPIVRIAKTAAE---------AI 198
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAY---------ITETESQVFKLYNENSVFSSELL 237
+ ++ YTDGS + G A I++ Q + ++V+++EL
Sbjct: 199 KEHDAMEPGTIRIYTDGSGINGHVGAAAVAPDLSFDGISKKRMQYMGTSDVSTVYAAELR 258
Query: 238 AIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN 281
+ + L + R ++F TD++++L A+ N P+
Sbjct: 259 GLVLALQVALDVHKAGTPPGRCAIF--TDNQAALQAVLNPKCPS 300
>gi|22596475|gb|AAN03239.1|AF457080_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGAANRENKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|427792931|gb|JAA61917.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1403
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 22/259 (8%)
Query: 184 NAFFQFKGENQNSLFCYTDGS----KTAANSGCAYITETESQVFKLYNENSVFSSELLAI 239
+A + + + L +TDGS +A + C + + +L S ++EL +
Sbjct: 1114 SAVAKLRERLRGHLLVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGL 1173
Query: 240 FMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI 299
+ H+ T P + V I DS+ +L AL V + K+ + +
Sbjct: 1174 HLAADHLAAT---PPQL---PVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGV 1227
Query: 300 TVKFLWIPSHLGIAGNVQVDELAKNSQNA--PLLSMMTSEDLKSAIKKKLLSEWHLHWKN 357
+ W+PSH+GIAGN + D AK + + P+ + D ++LL H
Sbjct: 1228 HLSLHWLPSHVGIAGNEEADAAAKAAHHGDTPVTKAVAQSDYSRQRLRQLLPT--AHPDT 1285
Query: 358 NVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHS-HLTHNFLLKREDPPLCEWCN 416
V + K +T L DR + ++ RLR G + + R P C C
Sbjct: 1286 RVASGKPPPPLPETGL-------DRCERRLLLRLRTGSAWPAARMYATGRCSSPACRRCG 1338
Query: 417 VQLSIQHILLECRKFRASR 435
+++HI+ C A R
Sbjct: 1339 DDETLEHIICSCPALAAER 1357
>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1428
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 1021 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQD-----SGPE--- 1072
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++++ +I E I V W+P+H GI GN Q
Sbjct: 1073 ---VNIITDSQYALGIIQ--AQPDKSESDLVNQIIEQLIQKNKVYLSWVPAHKGIGGNEQ 1127
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 1128 VDKLVSNG 1135
>gi|343418949|emb|CCD19553.1| hypothetical protein, conserved [Trypanosoma vivax Y486]
Length = 416
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 258 RDSVFICTDSKSSLLALKNIMSP--NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
R V TDS S L AL + + + IL I + L ++V F ++ SH G+ N
Sbjct: 119 RTRVVAFTDSLSLLKALGAGPAAVEDAMPRRILDLILHIVRLRVSVNFQFVFSHCGVPRN 178
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWK 375
D+ A+ P L D+ + +++++ +E + ++ + R D +
Sbjct: 179 EAADKAAEQGNAKPQLYPAWITDIVTGVERQVRNEMYRAFEEGRMPRTHRSALLDHVRPA 238
Query: 376 SSFDK-DRRKEIVICRLRIG---HSHLTHNFLLKREDPPLCEWCNVQLSI 421
K DR E ++ + R G H H L ++ D C WCN Q+++
Sbjct: 239 PKHSKVDRLGESLLAQFRTGTSKHFGWLHRVLARKMDQLECRWCNAQVAV 288
>gi|257152889|emb|CAT00588.1| gag/pol precursor [HIV-1 M_02CD.LBTB032]
Length = 1431
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L S PE
Sbjct: 1024 YVDG---AANRETKLGKAGYVTDRGKQKIIPLTETTNQKTELHAIYLALQD-----SGPE 1075
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 1076 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVHLTWVPAHKGI 1125
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 1126 GGNEQVDKL 1134
>gi|326416830|gb|ADZ73268.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|393226924|gb|EJD34630.1| hypothetical protein AURDEDRAFT_75996 [Auricularia delicata
TFB-10046 SS5]
Length = 124
Score = 47.0 bits (110), Expect = 0.032, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 382 RRKEIVICRLRIGHSHLT-HNFLLKREDPPLCEWCNVQ-LSIQHILLECRKFRASRNK 437
R +I +LR GH+ L H +KR + P+C+ C S+QH LLECR++R R +
Sbjct: 3 RTSASIITQLRSGHAPLNKHLHRIKRHNHPMCDACGAAPESVQHYLLECRQYRPHRER 60
>gi|407227208|emb|CCA61251.1| Pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 952
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S+PE
Sbjct: 595 YVDGAASRETRLGKAGYVTDKGKQKIITLTETTNQKAELQAIQLALQD-----SKPE--- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQ 701
Query: 318 VDEL 321
VD+L
Sbjct: 702 VDKL 705
>gi|3947927|gb|AAC82617.1| pol protein [HIV-1 CRF04_cpx]
Length = 1002
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI++ L +
Sbjct: 595 YVDGAANRETKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ ++ ++ P+ ++++ +I E I V W+P+H GI GN Q
Sbjct: 646 --EVNIVTDSQYAIGIIQ--AQPDRSESDLVNQIIEQLIRKDKVYLSWVPAHKGIGGNEQ 701
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 702 VDKLVSNG 709
>gi|7335662|gb|AAA76841.2| pol [Human immunodeficiency virus 2]
Length = 1073
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ ++ + S +EL A M L+ S P+ I
Sbjct: 661 YTDGSCNRQSKEGKAGYVTDRGRDRVRVLEQTSNQQAELEAFAMALAD-----SGPKVNI 715
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I V W+P+H GI GN
Sbjct: 716 IVDSQYVM-----GIVAGQPTESENRIVNQII----EDMIKKEAVYVAWVPAHKGIGGNQ 766
Query: 317 QVDEL 321
+VD L
Sbjct: 767 EVDHL 771
>gi|56609252|gb|AAW03212.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKRGKAGYITDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDRSDSELVNQIIEKL----IGKDRVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|227133689|gb|ACP19725.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1008
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI + L
Sbjct: 601 YVDGAANRENKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQD-----------S 649
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 650 ESEVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGGNEQ 707
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 708 VDKLVSNG 715
>gi|156052317|ref|XP_001592085.1| hypothetical protein SS1G_06324 [Sclerotinia sclerotiorum 1980]
gi|154704104|gb|EDO03843.1| hypothetical protein SS1G_06324 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 452
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 200 YTDGSKTAANS----GCAYI-----TETESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
++DGS+ + G Y T+ + ++++++ VF +E + + L H+ +T
Sbjct: 288 FSDGSEQTIDRKHHVGYGYAIYRNGTQIATGYKQIHSDSHVFDAEAIGAWRGLEHLISTL 347
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINE-LKILNITVKFLWIPSH 309
+ P +++C DS S + ++ P K ++ ++ LNI VK W P H
Sbjct: 348 AGPP---NGRIWMCIDSTSVIWGMRGDAPPTS--QWAFHKCHKAIRQLNIRVK--WSPGH 400
Query: 310 LGIAGNVQVDELAKNSQNAPL 330
+ I GN + D LA P+
Sbjct: 401 MEIEGNEEADRLANAGAVGPM 421
>gi|726195|gb|AAA64576.1| pol polypeptide, partial [Human immunodeficiency virus 2]
Length = 1035
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + YIT+ ++ + + +EL A M L T S P+ I
Sbjct: 623 YTDGSCNRQSKEGKAGYITDRGRDKVRILEQTTNQQAELEAFAMAL-----TDSGPKANI 677
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + LVN I+ E I T+ W+P+H GI GN
Sbjct: 678 IVDSQYVM-----GIVAGQPTESESKLVNQII----EEMIKKETLYVAWVPAHKGIGGNQ 728
Query: 317 QVDEL 321
+VD L
Sbjct: 729 EVDHL 733
>gi|85700585|gb|ABC74695.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 592 YVDGAANRDTKKGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V + TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNVVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|154271472|ref|XP_001536589.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150409259|gb|EDN04709.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1184
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 74/366 (20%), Positives = 138/366 (37%), Gaps = 65/366 (17%)
Query: 33 VRPIMDYGA-VIYGSATQSS----------------LSKLNTVYHTALRIISGAYRTSPI 75
V P + YG YG TQ + + + V A R + +RT+PI
Sbjct: 707 VVPSLLYGTEAWYGGRTQPARHTGRSGEVSSRLGWHVGTVEKVLTMAARGVLPVFRTTPI 766
Query: 76 ESLYAENGQPPLETRRKILLANYGTRVKC-NPSNPVSLILTHAQLGRNINRANLPRTVKS 134
+LY + G P + + TR++ + +P++ + + R R +
Sbjct: 767 AALYRDAGLPSAMVALEEAKIRFATRLQVVDEKHPLASRIAPPMITRG-------RGAGT 819
Query: 135 RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFK---- 190
R R+ A + + + + L++P Y + V KNA FK
Sbjct: 820 RQRSKTKIQRLGALLPEVNRHT----LAIPH--YSEGCGTDPTEGVDKKNAAQAFKEWWR 873
Query: 191 GENQNSLFCYTDGSKTA---------------ANSGCAYITETESQVFKLYNENSVFSSE 235
+ L+ ++DGS+ + N A + S + +++ +V +
Sbjct: 874 SQPSTDLYVFSDGSERSLDNSRQVGYGFIVYQGNKQLASFSAALSSMSHIFDAEAVGACR 933
Query: 236 LLAIFM-LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINEL 294
L + LL + S P+ +++C D+ S + ++ + + N + +EL
Sbjct: 934 ALECAVKLLPCVTEDSSNPQ------IWLCLDNTSVIWGIRGSAAAS--SNWAYNRCHEL 985
Query: 295 KILNITVKFLWIPSHLGIAGNVQVDELAK---NSQNAPLLSMMTSEDLKS--AIKKKLLS 349
+ V W P H+GI GN + D LAK +S AP + + + + K+L
Sbjct: 986 -LRQHNVGLKWAPGHMGIEGNEEADRLAKRAVSSTAAPAYGLEATPTVSGVRTVAKQLSQ 1044
Query: 350 EWHLHW 355
E W
Sbjct: 1045 EARRKW 1050
>gi|344311655|gb|AEN04350.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 441 YVDGASNRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + J+ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESEJVNQIXEQLIRKERVYLSWVPAHKGIGGNEQ 547
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 548 VDKLVSNG 555
>gi|343472747|emb|CCD15173.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 474
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 10/169 (5%)
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKI----LNITVKFLWIPSHLGIA 313
R V TDS S L+AL P+ + + IL +I +L + L ++V F ++ SH G+
Sbjct: 178 RTRVVAFTDSLSLLMALGT--GPSVVEDAILRRIWDLTLRLVRLRVSVNFQFVFSHCGVP 235
Query: 314 GNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLL 373
N D+ A+ P + D+ +A+++++ +E + ++ + R + +
Sbjct: 236 RNEAADKAAEQGNAKPQMYPAWITDIVAAVERQIRNEMYKDFEEGLRPRTHRSVLLGHVR 295
Query: 374 WKSSFDK-DRRKEIVICRLRIG---HSHLTHNFLLKREDPPLCEWCNVQ 418
K R E ++ + R G H H L ++ D C WC VQ
Sbjct: 296 PAPKHTKLGRLGESLLAQFRTGTSRHFGWLHRVLTRKTDRLECRWCRVQ 344
>gi|212382766|gb|ACJ25692.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 592 YVDGAANRDTKRGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V + TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNVVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|116203539|ref|XP_001227580.1| hypothetical protein CHGG_09653 [Chaetomium globosum CBS 148.51]
gi|88175781|gb|EAQ83249.1| hypothetical protein CHGG_09653 [Chaetomium globosum CBS 148.51]
Length = 1641
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 159/436 (36%), Gaps = 60/436 (13%)
Query: 28 LFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESLYAENGQPP 86
LF A V P+MDY A ++ A + +LS LN I+GA+RT+ + AE P
Sbjct: 1177 LFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVVEAEASIYP 1236
Query: 87 LETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLEDLQIFDRIS 146
+ R A+ + P TH + + RT + LQ R++
Sbjct: 1237 VRERHAQAAASLWINIHTLPG-------THPLAMKKV------RTTVRFVSPLQKIARVA 1283
Query: 147 AQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAVKNAFFQFK 190
V + R E I PW + + K + +S +VK
Sbjct: 1284 EGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGIVGMG 1343
Query: 191 GENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTR 250
G +++LF T + T +Y V E + +++EL AI M L +
Sbjct: 1344 GLARDTLFNRTSETVT------SYAV-----VLGTREEQNPYTAELAAIAMALEKL---- 1388
Query: 251 SRPEYIFRDSVFICTDSKSSL----LALKNIMSPNHLVNNILVKINELKILNITVKFLWI 306
P I + + T ++S+L A I H + +V FLWI
Sbjct: 1389 --PASICHRHITVITRNQSALGSSWTAAAAIRPNRHSYGKSTTWPRLHRQRGNSVNFLWI 1446
Query: 307 PSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRR 366
P+ + A A+ + KS + + V K +
Sbjct: 1447 PAEIDFALGSDAKAAAQRASKQGRTPDSQIPQAKSTAMRLAMERQRATRVLPVSVGKFSK 1506
Query: 367 IKEDTLLWKSS---FDKDRRKEI-VICRLRIGHSHLTHNFLLKR---EDPPLCEWCNVQL 419
+ L K + +DK +R+E V+ +LR G + L N L R + LC +
Sbjct: 1507 AMDAALPGKHTRHLYDKLKRREACVLAQLRTGMARL--NGFLSRIGAVESDLCACGQARE 1564
Query: 420 SIQHILLECRKFRASR 435
S++H L C K+ A R
Sbjct: 1565 SVEHFLFRCVKWTALR 1580
>gi|407734103|gb|AFU27737.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q E + +EL AI++ L S
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 634 V 634
V
Sbjct: 701 V 701
>gi|407734087|gb|AFU27723.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407734095|gb|AFU27730.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q E + +EL AI++ L S
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 634 V 634
V
Sbjct: 701 V 701
>gi|3779268|gb|AAD03316.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 1028 YVDGAANRETKQGKAGYVTDRGRQKVVTLTETTNQKTELQAINLALQD-----SGPE--- 1079
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 1080 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKEKIYLSWVPAHKGIGGN 1132
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 1133 EQVDKLVSNG 1142
>gi|407734111|gb|AFU27744.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q E + +EL AI++ L S
Sbjct: 594 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS--------- 644
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GNVQ
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNVQ 700
Query: 634 V 634
V
Sbjct: 701 V 701
>gi|294892079|ref|XP_002773884.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
gi|239879088|gb|EER05700.1| hypothetical protein Pmar_PMAR011746 [Perkinsus marinus ATCC 50983]
Length = 1178
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 107/251 (42%), Gaps = 25/251 (9%)
Query: 194 QNSLFCYTDGSKTAANS------GCAYI----TETESQVFKLYNENSVFSSELLAIFMLL 243
+ + YTDGS+ + G A I + E+ F+L +++ +E AI L
Sbjct: 888 REGVRVYTDGSRKDPDEAGTCSVGAAAIIYKHSNKEAHRFRLPPFATIYQAEQYAIIGAL 947
Query: 244 SHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKF 303
+ + E V +D +S L + +H N IL + +++ IT F
Sbjct: 948 EALKKDK---EVADGSRVLFFSDCRSVLQRILG-GGGDHWSNRILEIASSMRVEGITCCF 1003
Query: 304 LWIPSHL---GIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEW---HLHWKN 357
+WIPSH I GN + D A ++ L +++ + A K LL+ + + +
Sbjct: 1004 IWIPSHQQDGTIPGNEEADLEANRARLLELDGVVSDFPIPIAHTKGLLNNYARAQVVREA 1063
Query: 358 NVINNKLRRIKEDTLLWKSSFDKDRR--KEIVICRLRIGHSHLTHNFLLK-REDP--PLC 412
I+N R + + ++ R K+ + L GHS + ++L K + D PLC
Sbjct: 1064 ASISNPELRAMLSSRRQRGIVERQLRSYKDGSVLNLLAGHSKILRSYLAKIKPDAYDPLC 1123
Query: 413 EWCNVQLSIQH 423
+ C V ++ H
Sbjct: 1124 QTCGVTHNLVH 1134
>gi|38491687|gb|AAR22077.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 600 YVDGASNRETKMGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 650
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 651 --EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 704
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 705 EQVDKLVSNG 714
>gi|32189800|gb|AAP75711.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE 647
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 648 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IQKERVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|3132812|gb|AAC29078.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGAANKETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|373881378|gb|AEY78022.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDG---AANRETKJGRAGYVTDRGRQKXXSLTETTNQKTELQAIYLALQDSGS------ 590
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 591 -----EVNIVTDSQYALGIIQ--AQPDKSESELVXQIIEQLIXKEKVYLSWVPAHKGIGG 643
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 644 NEQVDKLVSNG 654
>gi|326370832|gb|ADZ56589.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ Y+T+ Q N+ + +EL AI++ L
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L +++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQS--QPDKSESEIVNQIIEQLIKKEKVYLTWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NEQVDKLVSNG 710
>gi|407741855|gb|AFU34210.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESDIVNQIIEELINKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|373881360|gb|AEY78010.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDGAANRENKXGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ N Y+T+ Q E + +EL AI++ L S
Sbjct: 540 YVDGAANRENKXGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS--------- 590
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGIGGN 644
Query: 632 VQV 634
QV
Sbjct: 645 EQV 647
>gi|343533463|gb|AEM54752.1| pol protein [Simian-Human immunodeficiency virus]
gi|343533474|gb|AEM54762.1| pol protein [Simian-Human immunodeficiency virus]
Length = 1060
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS K + YIT+ K+ + + +EL A M L T S P+ I
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMAL-----TDSGPKANI 702
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++ S + LVN I+ ++ +K L I V W+P+H GI GN
Sbjct: 703 IVDSQYVM-----GIITGCPTESESRLVNQIIEEM--IKKLEIYV--AWVPAHKGIGGNQ 753
Query: 317 QVDEL 321
+VD L
Sbjct: 754 EVDHL 758
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
YTDGS K + YIT+ K+ + + +EL A M L+ S I
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMALT----DSGPKANII 703
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
DS ++ ++ S + LVN I+ ++ +K L I V W+P+H GI GN +
Sbjct: 704 VDSQYVM-----GIITGCPTESESRLVNQIIEEM--IKKLEIYV--AWVPAHKGIGGNQE 754
Query: 634 VPFL 637
V L
Sbjct: 755 VDHL 758
>gi|283444777|gb|ADB20258.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAANRETKAGKAGYVTDRGRQKVITLTETTNQKTELQAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|56609339|gb|AAW03289.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDRSDSELVNQIIEKL----IGKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|156052939|ref|XP_001592396.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980]
gi|154704415|gb|EDO04154.1| hypothetical protein SS1G_06637 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1249
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 119/303 (39%), Gaps = 37/303 (12%)
Query: 155 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
Y PW+ VP + ++ KE + + N F+++ +N++ YTD S T G
Sbjct: 71 YFPPWKKEVPYKVNISKLGKEE--AAMIHNLAFKYRC--KNTITIYTDASSTLEGIGVGI 126
Query: 215 ITE--------TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
+ ++ + V++ ELL + + + N+ ++P F+ I +D
Sbjct: 127 GIVVILPNGRISHQEIINIGVNQLVYNGELLGVTKAIEY-ANSIAQPGNKFK----IYSD 181
Query: 267 SKSSLLALKNIMS-PNHLVNNILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
+++ L LK P +K E ++ + W+P H + GN D LAK
Sbjct: 182 NQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKE 241
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKED---TLLWKSSFD-- 379
+ P S TS K++ SE +W + N + WK S
Sbjct: 242 ATKIPSPSHETSYASIGMDIKRMKSE---NWIAILNTNNFHQPSSTYSRNYPWKISSKIR 298
Query: 380 -KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFR 432
K IC +L+IGH + F + D C C + S H+LL C ++
Sbjct: 299 VPGNIKRSTICALFQLKIGHGYFKSYLKRFGISSNDS--CR-CGGKESPDHLLLNCPIYK 355
Query: 433 ASR 435
+R
Sbjct: 356 TAR 358
>gi|429249560|gb|AFZ77824.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
>gi|363583990|gb|AEW27545.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ + +E + +EL AI++ L +
Sbjct: 595 YVDGAASRDTKQGKAGYVTDRGRRKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 700 EQVDKLVSNG 709
>gi|327458279|gb|AEA76579.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 186 FFQFKGEN-QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
++Q + E + + Y DG+ + Y+T+ Q E + +EL AI +
Sbjct: 426 WYQLEKEPIEGAETFYVDGAANRETKXGKAGYVTDRGRQKXXCLTETTNQKTELQAIQLA 485
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 302
L + V I TDS+ +L ++ P+ + I+ +I E I V
Sbjct: 486 LQDSGS-----------EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIXKEXVY 532
Query: 303 FLWIPSHLGIAGNVQVDELAKNS 325
W+P+H GI GN QVD+L N
Sbjct: 533 LSWVPAHKGIGGNEQVDKLVSNG 555
>gi|56609282|gb|AAW03239.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDRSDSELVNQIIEKL----IGKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|315258526|dbj|BAJ46198.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + + +EL AI++ L +
Sbjct: 599 YVDG---AANRDTKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQDSGS------ 649
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 650 -----EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 702
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 703 NEQVDKLVSNG 713
>gi|315258516|dbj|BAJ46189.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + + +EL AI++ L +
Sbjct: 599 YVDG---AANRDTKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQDSGS------ 649
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 650 -----EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 702
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 703 NEQVDKLVSNG 713
>gi|331222567|ref|XP_003323957.1| hypothetical protein PGTG_05859 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 288
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 188 QFKGENQN-SLFCYTDGSKTA-ANSGCAYITETE----SQVFKLYNENSVFSSELLAIFM 241
Q + E QN SL +TDGS +G A +T + K + S F +EL+ I +
Sbjct: 30 QVQQETQNRSLVIFTDGSWIPDKGAGAAAVTHPSGMSLAATVKPADFISNFETELIGIGL 89
Query: 242 LLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN---HLVNNILVKINELKILN 298
++ N +V I D++ +L+ + +S + HL + + +K+L
Sbjct: 90 AITIAQNALEADHSQEISAVAIFGDNQGALMLSSDPLSQSPGQHLYTDNFFR---MKLLG 146
Query: 299 ITVKFLWIPSHLGIAGNVQVDELAKNS--QNAPLLSMMTS 336
VK W PSH GI N + D LAK + +N P+ + +S
Sbjct: 147 CPVKLYWCPSHEGIIANEKADTLAKEAAGENPPVTNNSSS 186
>gi|32344837|gb|AAM82293.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q +E + +EL AI + L S PE
Sbjct: 592 YVDGAANRENKMGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 644 ---VNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIKKERVYLSWVPAHKGIGGNEQ 698
Query: 318 VDEL 321
VD+L
Sbjct: 699 VDKL 702
>gi|327458277|gb|AEA76578.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 186 FFQFKGEN-QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
++Q + E + + Y DG+ + Y+T+ Q E + +EL AI +
Sbjct: 426 WYQLEKEPIEGAETFYVDGAANRETKXGKAGYVTDRGRQKXXCLTETTNQKTELQAIQLA 485
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVK 302
L + V I TDS+ +L ++ P+ + I+ +I E I V
Sbjct: 486 LQDSGS-----------EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIXKEKVY 532
Query: 303 FLWIPSHLGIAGNVQVDELAKNS 325
W+P+H GI GN QVD+L N
Sbjct: 533 LSWVPAHKGIGGNEQVDKLVSNG 555
>gi|295413463|gb|ADG07942.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKSELQAIQLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++++ +I EL I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDQSESDLVNQIIELLIKKEKVYLAWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|116181686|ref|XP_001220692.1| hypothetical protein CHGG_01471 [Chaetomium globosum CBS 148.51]
gi|88185768|gb|EAQ93236.1| hypothetical protein CHGG_01471 [Chaetomium globosum CBS 148.51]
Length = 877
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 628 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 687
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 688 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 723
>gi|71794586|emb|CAI28827.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L
Sbjct: 1023 YVDG---AANRETKLGKAGYVTDKGRQKVVSLTETTNQKTELHAIYLALQDSGQ------ 1073
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI
Sbjct: 1074 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE----KVYLSWVPAHKGI 1124
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 1125 GGNEQVDKLVSNG 1137
>gi|212547169|ref|XP_002153737.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
gi|210064393|gb|EEA18490.1| reverse transcriptase, putative [Talaromyces marneffei ATCC 18224]
Length = 1703
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 103/470 (21%), Positives = 178/470 (37%), Gaps = 79/470 (16%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYH 60
K L+A LK L GL+ A +LF + V ++DY + ++ A ++ +N V
Sbjct: 1229 KGLEAAMELKRLR----GLTPATARQLFTSTVASVVDYASNVWMHAFKDKAIGPINRVQK 1284
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE P +R T + P +NP+ +
Sbjct: 1285 VGAQAIVGTFLTVATSVAEAEAHIAPARSRFWKRAVKMWTDIHTLPETNPLRRNTDRIRK 1344
Query: 120 GRNINRANLPRTVKSRLEDLQI--FDRISAQVIKRDEYIAPWELSV----PEIIYLTSEK 173
R +R+ L V L+DL++ + I+ + APWE V + + + +E
Sbjct: 1345 FRRYHRSPL-YQVADVLKDLEMETLETINPFTL------APWEERVQTDFSKTLEIQTEG 1397
Query: 174 KENLS---SVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENS 230
+ ++ S + +N F G Q YT +T S + +E +
Sbjct: 1398 RGSMQIAVSSSARNEVVGFGGVIQKQPPRYTKPK-----------LKTFSATLGIRSEQN 1446
Query: 231 VFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNIL 288
+S EL AI L + T+S +R + + T +K++ L L+N S V I
Sbjct: 1447 PYSGELAAIAHALRTLPVTKS-----YR--ITLLTSNKAAALTLRNPRQQSGQEHVCLIY 1499
Query: 289 VKINELKILNITVKFLWIPS------------------HLGIAGNVQVDELAKNSQNAPL 330
I +L+ + LW+P+ H Q+ + + N
Sbjct: 1500 KVIRKLRKNGNQIAILWVPTSEDNKLLRLAKEQARIATHEDATPQAQIPRMKSTTLNIAR 1559
Query: 331 LSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICR 390
SE L + K H+ + + K R D L WK + V+ +
Sbjct: 1560 SQQGISEGLPEKVGK------HVKRVDAALPGKHTRQLYDRLSWKEAS--------VLAQ 1605
Query: 391 LRIGHSHLTHNFLLKREDPPLCEWC---NVQLSIQHILLECRKFRASRNK 437
LR G + L N L R + + C + +++H L C+K+ A R +
Sbjct: 1606 LRTGMARL--NGYLYRINVAQTDQCPCGQARETVEHFLFRCQKWTAHRTE 1653
>gi|111119028|gb|ABH05948.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ YIT+ Q + + +EL AI++ L
Sbjct: 596 YVDGAASRETKAGKAGYITDRGRQKVVTLTDTTNQKTELQAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
+DS V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLTWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|29367081|gb|AAO22475.1| pol protein [Simian immunodeficiency virus]
Length = 1011
Score = 46.6 bits (109), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 200 YTDGSK---TAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYI 256
Y DG+ + Y + +S+V L E + +EL AI M L S P
Sbjct: 609 YVDGAANRNSKEGKAGYYTSRGKSKVVAL-EETTNQKAELTAIKMALQD-----SGPR-- 660
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
V I TDS+ +L L +P+ N I+ +I EL I + W+P+H GI GN
Sbjct: 661 ----VNIVTDSQYALGILS--AAPDQSDNPIVREIIELMIGKEEIYLSWVPAHKGIGGNE 714
Query: 317 QVDEL 321
Q+D+L
Sbjct: 715 QIDKL 719
>gi|395455399|gb|AFN62087.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L +
Sbjct: 592 YVDGAANRETKTGKAGYVTDRGRQKVVTLSETTNQKTELQAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 643 --EVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLIKKEKVYLSWVPAHKGIGGNEQ 698
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 699 VDKLVSNG 706
>gi|429249650|gb|AFZ77869.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1001
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKRGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
>gi|116204439|ref|XP_001228030.1| hypothetical protein CHGG_10103 [Chaetomium globosum CBS 148.51]
gi|88176231|gb|EAQ83699.1| hypothetical protein CHGG_10103 [Chaetomium globosum CBS 148.51]
Length = 631
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 23/148 (15%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + S++K L +
Sbjct: 401 LSRLAASTWGLGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKSITKALGKAQNK 460
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTR--------VKCNPSNPVSLI 113
LRI++GA++ +PI +L E PPL+ LA++ T+ + S+I
Sbjct: 461 GLRIVAGAFKHTPIRNLETETWVPPLDLYLNKRLADFETKHQRTDLDDGQGGKKTAGSVI 520
Query: 114 LTHAQ------LGRNINRANLPRTVKSR 135
LT Q ++ NR PRTV R
Sbjct: 521 LTACQRIQQRLRSKSGNRGR-PRTVGLR 547
>gi|158380327|gb|ABW37368.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 592 YVDGAASRDTKIGKAGYVTDRGRQKIVSLNETTNQKTELQAIYLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 592 YVDGAASRDTKIGKAGYVTDRGRQKIVSLNETTNQKTELQAIYLALQDSGS--------- 642
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 632 VQV 634
QV
Sbjct: 697 EQV 699
>gi|238733828|gb|ACR55105.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAANRDSKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L ++ S + LVN I+ K+ I V W+P H GI GN
Sbjct: 648 ---VNIVTDSQYALGIIQATPDRSESELVNQIIEKL----IGKDKVYLSWVPPHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|429249622|gb|AFZ77855.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASKETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|85700635|gb|ABC74740.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 599 YVDGAANRETKAGKAGYVTDRGRQKVITLNETTNQKTELQAIQLALQDSGS--------- 649
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 650 --EVNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKVYLSWVPAHKGIGGN 703
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 704 EQVDKLVSNG 713
>gi|116180986|ref|XP_001220342.1| hypothetical protein CHGG_01121 [Chaetomium globosum CBS 148.51]
gi|88185418|gb|EAQ92886.1| hypothetical protein CHGG_01121 [Chaetomium globosum CBS 148.51]
Length = 392
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 112 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 171
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA+Y R++
Sbjct: 172 GAFKSTPIRNLETETWVPPLDLYLNKRLADYENRLQ 207
>gi|443303533|gb|AGC82666.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI++ L S PE
Sbjct: 540 YVDGAANRETKMGKAGYITDRGRQKIVSLTETTNQKTELQAIYLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 592 ---ANIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
Q+D+L N
Sbjct: 645 EQIDKLVSNG 654
>gi|409684306|gb|AFV34224.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASKETKLGKAGYVTNKGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735331|gb|AFU28776.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|17046583|gb|AAL34617.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 599 YVDGAASRETKKGKAGYVTDRGRQKCVTLTETTNQKTELQAIQLALQD-----SGPE--- 650
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ KI W+P+H GI G
Sbjct: 651 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKIY-----LSWVPAHKGIGG 702
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 703 NEQVDKL 709
>gi|407735301|gb|AFU28752.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735286|gb|AFU28740.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|429249630|gb|AFZ77859.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASKETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735326|gb|AFU28772.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|38491519|gb|AAR21927.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L +
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI++ L S
Sbjct: 596 YVDGAASRETKIGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKDKVYLSWVPAHKGIGGN 700
Query: 632 VQV 634
QV
Sbjct: 701 EQV 703
>gi|38491628|gb|AAR22024.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIHLALQDSGT------ 645
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 646 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 696
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 697 GGNEQVDKLVSNG 709
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Query: 516 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTE 570
Y DG AAN Y+T+ Q NE + +EL AI + L S TE
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIHLALQ-----DSGTE 646
Query: 571 YIFRDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 628
+ I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 ------VNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 696
Query: 629 AGNVQV 634
GN QV
Sbjct: 697 GGNEQV 702
>gi|344311663|gb|AEN04354.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L S PE
Sbjct: 441 YVDGASNRETKXGKAGYVTDRGRQKVVXLTETTNQKSELQAIQLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 493 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IXKERVYLSWVPAHKGIGGN 545
Query: 316 VQVDEL 321
QVD+L
Sbjct: 546 EQVDKL 551
>gi|407735306|gb|AFU28756.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|45361187|gb|AAS59381.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|68522025|gb|AAY98623.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +ELLAI + L +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVTTTETTNQKAELLAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 643 --EVNIVTDSQYALGIIQ--AQPDKSESELVTQIIEELIKKERVYLSWVPAHKGIGGNEQ 698
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 699 VDKLVSNG 706
>gi|407735321|gb|AFU28768.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407734864|gb|AFU28386.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDGGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|371559495|gb|AEX36675.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKMGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VNNI+ K+ E + V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESEIVNNIIEKLIEKE----RVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|407735316|gb|AFU28764.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|357615610|gb|EHJ69750.1| putative pol-like protein [Danaus plexippus]
Length = 168
Score = 46.2 bits (108), Expect = 0.051, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 21/158 (13%)
Query: 293 ELKILNITVKFLWIPSHLGIAGNV--------QVDELAKNSQNAPLLSM--MTSEDLKSA 342
++ I V+ W+PSH GI GN + DE NS P + LKS
Sbjct: 4 DMHIHGKVVQLQWVPSHNGIIGNELADQATRGRADENHSNSLKTPYTDFHHTFTMALKSL 63
Query: 343 IKK--KLLSEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIV-ICRLRIGHSHL- 398
K+ K +S+ W N+ + W + + RK IV I RLR GH
Sbjct: 64 YKEYWKTVSKEKGTWYANI------QRAPPAQPWYNKLKQYNRKFIVTINRLRFGHCRTP 117
Query: 399 THNFLLKREDPPLCEWCNVQLS-IQHILLECRKFRASR 435
+H + L+ P C C L+ +QHI+ +C +R R
Sbjct: 118 SHLYKLQLVQNPTCPECQHDLADLQHIVFQCPAYRIHR 155
>gi|344311687|gb|AEN04366.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L +
Sbjct: 441 YVDG---AANRETKIGKAGYVTDKGRQKIVTLNETTNQKAELQAIQLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 492 -----EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKERVYLSWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|156048334|ref|XP_001590134.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980]
gi|154693295|gb|EDN93033.1| hypothetical protein SS1G_08898 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 401
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 69/303 (22%), Positives = 118/303 (38%), Gaps = 37/303 (12%)
Query: 155 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAY 214
Y PW+ VP + ++ KE + + N F+++ +N++ YTD S T G
Sbjct: 49 YFPPWKKEVPYKVNISKLGKE--EAAMIHNLAFKYRC--KNTITIYTDASSTLEGIGIGI 104
Query: 215 ITE--------TESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266
+ + + V++ ELL + + + N+ ++P F+ I +D
Sbjct: 105 GIAVILPNGRISHQETINIGVNQLVYNGELLGVVKAIEY-ANSIAQPGNKFK----IYSD 159
Query: 267 SKSSLLALKNIMS-PNHLVNNILVKINE-LKILNITVKFLWIPSHLGIAGNVQVDELAKN 324
+++ L LK P +K E ++ + W+P H + GN D LAK
Sbjct: 160 NQAGLFRLKTPSDLPGQSCQIKAIKAAEAIQNKGAEISLNWVPGHTSVQGNELADSLAKE 219
Query: 325 SQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKED---TLLWKSSFD-- 379
+ P S TS K++ SE +W + N + WK S
Sbjct: 220 ATKIPSSSHETSYASIGMDIKRMKSE---NWITILNTNNFHQPSSTYSRNYPWKISSKIR 276
Query: 380 -KDRRKEIVIC---RLRIGHSHLT---HNFLLKREDPPLCEWCNVQLSIQHILLECRKFR 432
K IC +L+IGH + F + D C C + S H+LL C ++
Sbjct: 277 IPGNIKRSTICALFQLKIGHGYFKSYLKRFGISSNDN--CR-CGGKESPDHLLLSCPLYK 333
Query: 433 ASR 435
+R
Sbjct: 334 MAR 336
>gi|17352345|gb|AAL01564.1| pol [Human immunodeficiency virus 1]
Length = 1001
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 36/176 (20%)
Query: 155 YIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQF-KGENQNSLFCYTDGS--KTAANSG 211
+I WE + P ++ L ++Q KG + Y DG+ +
Sbjct: 564 WIPEWEFNTPPLVKL----------------WYQLDKGPIVGAETFYVDGAANRETKRGK 607
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
Y+T+ E + +EL AI + L + V I TDS+ +L
Sbjct: 608 AGYVTDRGRXKVVALTETTNQKTELQAIHLALQDSGS-----------EVNIVTDSQYAL 656
Query: 272 --LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
+ + S + LVN I+ K+ I V W+P+H GI GN Q+D+L N
Sbjct: 657 GIIQAQPDTSESELVNQIIEKL----IGKERVYLSWVPAHKGIGGNEQIDKLVSNG 708
>gi|407735311|gb|AFU28760.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|345809611|gb|AEO17525.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAANKETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALKD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---INIVTDSQYALGIIQ--AQPDRSESEVVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|212383238|gb|ACJ25909.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +ELLAI + L +
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVTTTETTNQKAELLAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 643 --EVNIVTDSQYALGIIQ--AQPDKSESELVTQIIEELIKKERVYLSWVPAHKGIGGNEQ 698
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 699 VDKLVSNG 706
>gi|363583996|gb|AEW27550.1| pol protein [Human immunodeficiency virus 1]
gi|363584002|gb|AEW27555.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI++ L +
Sbjct: 595 YVDGAASRETKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDEL 321
QVD+L
Sbjct: 700 EQVDKL 705
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q +E + +EL AI++ L S
Sbjct: 595 YVDGAASRETKQGKAGYVTDRGRQKVVSLSETTNQKTELQAIYLALQDSGS--------- 645
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYAIGIIQAQPDRSESDLVNQIIEKL----IQKDKVYLSWVPAHKGIGGN 699
Query: 632 VQV 634
QV
Sbjct: 700 EQV 702
>gi|407733136|gb|AFU26920.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ A Y+T+ Q E + +EL AI + L +
Sbjct: 597 YVDGAASREAKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 --EVNIVTDSQYALGIIQ--AQPDRSESEVVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|307173557|gb|EFN64451.1| hypothetical protein EAG_11587 [Camponotus floridanus]
Length = 150
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+ K ++++ L WG LL ++ + +R ++YG S ++KL +
Sbjct: 43 KANKLTSVIRSLCGTWWGSDPKLLLGIYKSLIRGSIEYGCQFLPVYHSSKINKLEKIQRK 102
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSNP 109
A++I G ++P + AE+G PPL+ R +L Y R + +NP
Sbjct: 103 AIKICLGLRSSTPSNVVLAESGIPPLKLRCNLLSERYILRSLASTNNP 150
>gi|407735296|gb|AFU28748.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 982
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEVVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|63098391|gb|AAY32433.1| pol protein [Human immunodeficiency virus 1]
gi|212383229|gb|ACJ25905.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 46.2 bits (108), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q +E + +EL AI++ L +
Sbjct: 592 YVDGAANRENKLGKAGYVTDRGRQKIVTLSETTNQKTELQAIYLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ N Y+T+ Q +E + +EL AI++ L S
Sbjct: 592 YVDGAANRENKLGKAGYVTDRGRQKIVTLSETTNQKTELQAIYLALQDSGS--------- 642
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 632 VQV 634
QV
Sbjct: 697 EQV 699
>gi|222428409|gb|ACM50057.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q + + +EL AI++ L S PE
Sbjct: 596 YVDG---AANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQD-----SEPE 647
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 648 ------VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLAWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|113201798|gb|ABI33116.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1011
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 604 YVDG---AANRETKLGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQD-----SGPE 655
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 656 ------VNIITDSQYALGIIQAQPDRSESELVNQIIEQL----IKKEKVYLSWVPAHKGI 705
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 706 GGNEQVDKLVSNG 718
>gi|409180071|gb|AFV26100.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL A M L T S P+ I
Sbjct: 603 YTDGSCNRQSKEGKAGYVTDGGKDRVKVLEQTTNQQAELEAFLMAL-----TDSGPKANI 657
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +V+ I+ E I + W+P+H G+ GN
Sbjct: 658 IVDSQYVM-----GIVAGQPTESENKIVSQII----EEMIKKTAIYVTWVPAHKGLGGNQ 708
Query: 317 QVDEL 321
+VD L
Sbjct: 709 EVDHL 713
>gi|407734849|gb|AFU28374.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|77416897|sp|P15833.3|POL_HV2D2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1465
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS +T+ Y+T+ K+ + + +EL A + L T S P+ I
Sbjct: 1050 YTDGSCNRTSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEAFALAL-----TDSEPQVNI 1104
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + P + I+ KI E I V W+P+H G+ GN
Sbjct: 1105 IVDSQYVM-----GIIAAQ----PTETESPIVAKIIEEMIKKEAVYVGWVPAHKGLGGNQ 1155
Query: 317 QVDEL 321
+VD L
Sbjct: 1156 EVDHL 1160
>gi|313661149|dbj|BAJ41170.1| Pol protein [Human immunodeficiency virus 1]
gi|313661159|dbj|BAJ41179.1| Pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + N Y+T+ Q E + +EL AI + L S PE
Sbjct: 591 YVDGAASRENKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 642
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 643 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIRKEKVYLSWVPAHKGIGGNEQ 697
Query: 318 VDEL 321
VD+L
Sbjct: 698 VDKL 701
>gi|260533664|gb|ACX45070.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQDSGS------ 645
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 646 -----EVNIVTDSQYALGVIQAQPDKSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 696
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 697 GGNEQVDKLVSNG 709
>gi|242821354|ref|XP_002487663.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218712584|gb|EED12009.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 282
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 230 SVFSSELLAIFMLLSHICNTRSRPEYIFRD---SVFICTDSKSSLLALKNIMSP--NHLV 284
SV++++L+AI+ +S + D I +DS S L AL N + ++
Sbjct: 155 SVYAAKLMAIYYAISLVLKIAMETRQAMTDRQEPATILSDSMSVLQALSNARNKLGQRII 214
Query: 285 NNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
+ + EL+ I ++ W+P H G GN D LAK +
Sbjct: 215 QAVQQSVQELQTQGIPLRLQWVPGHCGDLGNEAADRLAKEA 255
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 546 SVFSSELLAIFMLLSHIYSTSSRTEYIFRD---SIFICTDSKSSLLALKNIMSP--NHLV 600
SV++++L+AI+ +S + + T D I +DS S L AL N + ++
Sbjct: 155 SVYAAKLMAIYYAISLVLKIAMETRQAMTDRQEPATILSDSMSVLQALSNARNKLGQRII 214
Query: 601 NNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ + EL+ I ++ W+P H G GN
Sbjct: 215 QAVQQSVQELQTQGIPLRLQWVPGHCGDLGN 245
>gi|158380336|gb|ABW37376.1| pol protein [Human immunodeficiency virus 1]
Length = 982
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 575 YVDGAASRETKTGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS--------- 625
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ K+ W+P+H GI G
Sbjct: 626 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVY-----LSWVPAHKGIGG 678
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 679 NEQVDKL 685
>gi|395455418|gb|AFN62104.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1008
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + + +EL AI + L S PE
Sbjct: 601 YVDG---AANRETKLGKAGYVTDRGRQKAVSFTDTTNQKTELQAINLALQD-----SGPE 652
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 653 ------VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGG 704
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 705 NEQVDKLVSNG 715
>gi|38491566|gb|AAR21969.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRENKLGKAGYVTDRGRQKVVTLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ ++ + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYAIGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|116201343|ref|XP_001226483.1| hypothetical protein CHGG_08556 [Chaetomium globosum CBS 148.51]
gi|88177074|gb|EAQ84542.1| hypothetical protein CHGG_08556 [Chaetomium globosum CBS 148.51]
Length = 402
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 79 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 138
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 139 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 174
>gi|339507471|gb|AEJ81147.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 21/131 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI++ L
Sbjct: 537 YVDGAASRETKIGKAGYVTDKGXQKVVTLNETTNQKTELEAIYLAL-------------- 582
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 583 KDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEELIKKEKVYLSWVPAHKGIGG 640
Query: 315 NVQVDELAKNS 325
N QVD+L +
Sbjct: 641 NEQVDKLVSSG 651
>gi|87083842|gb|ABD19502.1| pol protein [Simian immunodeficiency virus]
gi|387119192|gb|AFJ52180.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1002
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL A+ M L
Sbjct: 595 YVDGAANRETKRGKAGYVTNRGRQKIHSLEDTTNQKAELQAVLMALQDSGQ--------- 645
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V + TDS+ L L++ P+H ++I+ +I E I + W+P+H GI GN Q
Sbjct: 646 --EVNVVTDSQYVLGILQS--HPDHSESDIVNQIIEELIKKEKIYLSWVPAHRGIGGNEQ 701
Query: 318 VDEL 321
VD+L
Sbjct: 702 VDKL 705
>gi|114431043|dbj|BAF31820.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407734854|gb|AFU28378.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|114431003|dbj|BAF31784.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|363584008|gb|AEW27560.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L +
Sbjct: 595 YVDGAASRETKQGKAGYVTDRGRQKVVSLAETTNQKAELQAIHLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ ++ ++ P+ ++++ +I E I V W+P+H GI GN Q
Sbjct: 646 --EVNIVTDSQYAMGIIQ--AQPDRSESDLVNQIIEQLIQKDKVYLSWVPAHKGIGGNEQ 701
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 702 VDKLVSNG 709
>gi|116180586|ref|XP_001220142.1| hypothetical protein CHGG_00921 [Chaetomium globosum CBS 148.51]
gi|88185218|gb|EAQ92686.1| hypothetical protein CHGG_00921 [Chaetomium globosum CBS 148.51]
Length = 626
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 303 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 362
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 363 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 398
>gi|407736896|gb|AFU30092.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|407734869|gb|AFU28390.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407734874|gb|AFU28394.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|114430983|dbj|BAF31766.1| Pol [Human immunodeficiency virus 1]
gi|114430993|dbj|BAF31775.1| Pol [Human immunodeficiency virus 1]
gi|114431013|dbj|BAF31793.1| Pol [Human immunodeficiency virus 1]
gi|114431023|dbj|BAF31802.1| Pol [Human immunodeficiency virus 1]
gi|114431033|dbj|BAF31811.1| Pol [Human immunodeficiency virus 1]
gi|114431053|dbj|BAF31829.1| Pol [Human immunodeficiency virus 1]
gi|114431063|dbj|BAF31838.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407736944|gb|AFU30134.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|41056787|gb|AAR98769.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ ++ + + +EL A M L T S P+ I
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKVRMLEQTTNQQAELEAFAMAL-----TDSGPKANI 677
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + +VN I+ E I + W+P+H GI GN
Sbjct: 678 IVDSQYVM-----GIVAGQPTESESRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 728
Query: 317 QVDEL 321
+VD+L
Sbjct: 729 EVDQL 733
>gi|41056777|gb|AAR98760.1| pol protein [Human immunodeficiency virus 2]
Length = 1035
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ ++ + + +EL A M L T S P+ I
Sbjct: 623 YTDGSCNRQSKEGKAGYVTDRGRDKVRMLEQTTNQQAELEAFAMAL-----TDSGPKANI 677
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + +VN I+ E I + W+P+H GI GN
Sbjct: 678 IVDSQYVM-----GIVAGQPTESESRIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 728
Query: 317 QVDEL 321
+VD+L
Sbjct: 729 EVDQL 733
>gi|407736888|gb|AFU30085.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|14091494|gb|AAK53766.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + N Y+T+ Q E + +EL AI + L
Sbjct: 441 YVDGAASRENKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQD-----------S 489
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
R V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 490 RSEVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 516 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + N Y+T+ Q E + +EL AI + L SR+E
Sbjct: 441 YVDGAASRENKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQ-----DSRSE--- 492
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 547
Query: 634 V 634
V
Sbjct: 548 V 548
>gi|74315770|gb|ABA02493.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IGKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|148745887|emb|CAK49332.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVSLNETTNQKTELQAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + Y+T+ Q NE + +EL AI + L S
Sbjct: 596 YVDGAANRETKKGKAGYVTDRGRQKVVSLNETTNQKTELQAIHLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 632 VQV 634
QV
Sbjct: 701 EQV 703
>gi|116192701|ref|XP_001222163.1| hypothetical protein CHGG_06068 [Chaetomium globosum CBS 148.51]
gi|88181981|gb|EAQ89449.1| hypothetical protein CHGG_06068 [Chaetomium globosum CBS 148.51]
Length = 285
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + +K L +
Sbjct: 143 LSRLAASTWGLGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGTTKALGKAQNK 202
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GA++ +PI +L E PPL+ LA++ TR++
Sbjct: 203 SLRIVAGAFKHTPIRNLETETWVPPLDLYLNKRLADFETRLQ 244
>gi|306477493|gb|ADM89121.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVIPITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|229661922|gb|ACQ84376.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q + + +EL AI + L +
Sbjct: 596 YVDGAANRENKLGNAGYVTDRGRQKVVPLTDTTNQKAELQAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I+ V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLIIKEKVYLAWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|226347291|gb|ACO50060.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|116199821|ref|XP_001225722.1| hypothetical protein CHGG_08066 [Chaetomium globosum CBS 148.51]
gi|88179345|gb|EAQ86813.1| hypothetical protein CHGG_08066 [Chaetomium globosum CBS 148.51]
Length = 377
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + ++K L
Sbjct: 48 LSRLTASTWGLGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQSK 107
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GA++ +PI +L E PPL+ LA++ TR++
Sbjct: 108 SLRIVAGAFKHTPIRNLETETWVPPLDLYLNKPLADFETRLQ 149
>gi|407734859|gb|AFU28382.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|256252334|dbj|BAH97371.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|255069232|dbj|BAH89164.1| Pol [Human immunodeficiency virus 1]
gi|255069242|dbj|BAH89173.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|116200255|ref|XP_001225939.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
gi|88179562|gb|EAQ87030.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
Length = 1559
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 1236 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 1295
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 1296 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 1331
>gi|407736872|gb|AFU30071.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|344311685|gb|AEN04365.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + EL AI + L +
Sbjct: 441 YVDG---AANRETKIGKAGYVTDKGRQKXXTLNETTNQKXELQAIQLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 492 -----EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKERVYLSWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|116208080|ref|XP_001229849.1| hypothetical protein CHGG_03333 [Chaetomium globosum CBS 148.51]
gi|88183930|gb|EAQ91398.1| hypothetical protein CHGG_03333 [Chaetomium globosum CBS 148.51]
Length = 500
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 234 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKTQNKSLRIVA 293
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 294 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 329
>gi|407741850|gb|AFU34206.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELINKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|306416418|gb|ADM87056.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 441 YVDGAASREIKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++++I E I V W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIIQ--AQPDRSESEVVIQIIEEVIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|288187866|gb|ADC42420.1| pol protein [Human immunodeficiency virus 1]
Length = 671
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 28/145 (19%)
Query: 186 FFQFKGEN-QNSLFCYTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAI 239
++Q + E + + Y DG AAN Y+T+ Q N+ + +EL AI
Sbjct: 525 WYQLEKEPIEGAETFYVDG---AANRETKLGKAGYVTDKGRQKVVTLNDTTNQKTELQAI 581
Query: 240 FMLLSHICNTRSRPEYIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKI 296
++ L +DS V I TDS+ +L ++ P+ + I+ +I E I
Sbjct: 582 YLAL--------------QDSGVEVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLI 625
Query: 297 LNITVKFLWIPSHLGIAGNVQVDEL 321
V W+P+H GI GN QVD+L
Sbjct: 626 KKEKVYLAWVPAHKGIGGNEQVDKL 650
>gi|407741845|gb|AFU34202.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELINKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407736936|gb|AFU30127.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|226347271|gb|ACO50043.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L S PE
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE 647
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ I+ +I E I V W+P+H GI G
Sbjct: 648 ------VNIVTDSQYALGIIQ--AQPDRSETEIVNQIIEKLIEKEKVYLSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|25807936|gb|AAN74523.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKIGKAGYVTDRGRQRVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|312601994|gb|ADQ92552.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 606 YVDGAASRETKSGKAGYVTDRGRQKVVHITDTTNQKTELQAIYLALQD-----SGPE--- 657
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 658 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKEKIYLAWVPAHKGIGGNEQ 712
Query: 318 VDEL 321
+D+L
Sbjct: 713 IDKL 716
>gi|407736912|gb|AFU30106.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q +E + +EL AI++ L +
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 15/121 (12%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG SK Y+T Q +E + +EL AI++ L S
Sbjct: 596 YVDGAASKETKQGKAGYVTNRGRQKVVSLSETTNQKTELHAIYLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
+ I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 634 V 634
V
Sbjct: 703 V 703
>gi|373881408|gb|AEY78042.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L +
Sbjct: 540 YVDGAASRETKXGKAGYVTDRGRQKXXSLTETTNQKTELQAIHLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|328834227|gb|AEB52660.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 27/130 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q N+ + +EL AI++ L
Sbjct: 597 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNDTTNQKTELQAIYLAL----------- 642
Query: 255 YIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L ++ P+ ++I+ +I E I V W+P+H G
Sbjct: 643 ---QDSGLEVNIVTDSQYALGIIQ--AQPDRSESDIVSQIIEQLIKKEKVYLAWVPAHKG 697
Query: 312 IAGNVQVDEL 321
I GN QVD+L
Sbjct: 698 IGGNEQVDKL 707
>gi|256252344|dbj|BAH97380.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|3132802|gb|AAC29069.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|319429306|gb|ADV56926.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDG---AANRETKIGKAGYVTDKGRQRXVSLTETTNQKTELQAIYLALQDSGS------ 590
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 591 -----EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGIGG 643
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 644 NEQVDKLVSNG 654
>gi|407741865|gb|AFU34218.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELINKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|317031358|ref|XP_001393252.2| reverse transcriptase [Aspergillus niger CBS 513.88]
Length = 1646
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 97/454 (21%), Positives = 174/454 (38%), Gaps = 51/454 (11%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQS-SLSKLNTVYH 60
K L+A+ L+ L GLS + +LF + V P++DY + ++ A ++ + +N V
Sbjct: 1172 KGLEAVMELRRLR----GLSPSTARQLFKSTVAPVVDYASNVWMHAFKNKATGPINRVQR 1227
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
+ I G + T AE + R T + P +NP+ +
Sbjct: 1228 VGAQAIVGTFLTVATSVAEAEAHIATAQHRFWRRAVKMWTDLHTLPDTNPLRRTTARIRK 1287
Query: 120 GRNINRANLPRTVKS-RLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLS 178
R +R+ L + + + D++ + I+ + APWE + E +
Sbjct: 1288 FRRFHRSPLYQVADALKNIDMETLETINPFTL------APWETR----MQTDGEAMPDPQ 1337
Query: 179 SVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLA 238
S + +N + + + +T S +E + FS+EL A
Sbjct: 1338 SAPGGSIQIAISSSARNGMVGFGMAIEKQPPRYRKLKLKTFSMTLGARSEQNPFSAELAA 1397
Query: 239 IFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKI 296
I +L+ + + FR + + T +K++ L L+N S V + +N L+
Sbjct: 1398 IAHILNGLVGLKG-----FR--LRLLTSNKAAALTLQNPRQQSGQEFVCHTYKLMNRLRR 1450
Query: 297 LNITVKFLWIP-----SHLGIA---GNVQVDELAKNSQNAPLLSMMTSEDLKS-AIKKKL 347
++ LW+P LG+A E A P + T +S A+ K
Sbjct: 1451 KGNHIRILWVPISEDNKLLGLAKEQARAATHEDAIPQAQVPRMKSTTLNLARSQAVTTKA 1510
Query: 348 LSE---WHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLL 404
L E H+ + + K R D L WK + V+ +LR G + L N L
Sbjct: 1511 LPEDVGRHVKRVDAALPGKHTRQLYDGLSWKEA--------TVLAQLRTGMARL--NGYL 1560
Query: 405 KREDPPLCEWC---NVQLSIQHILLECRKFRASR 435
R + + C + +++H L CRK+ R
Sbjct: 1561 YRINAAQTDQCACGQARETVEHFLFRCRKWTTQR 1594
>gi|306416426|gb|ADM87060.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 559
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 440 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 490
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 491 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 546
Query: 318 VDEL 321
VD+L
Sbjct: 547 VDKL 550
>gi|170778877|gb|ACB36838.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K + Y+T+ Q + + +EL AI++ L
Sbjct: 441 YVDGAANKETKSGKAGYVTDKGRQKVXSLTDTTNQKTELQAIYLAL-------------- 486
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 487 QDSGLEVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGIGG 544
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 545 NEQVDKL 551
>gi|306477489|gb|ADM89119.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|256011706|gb|ACU55709.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q + + +EL AI++ L +
Sbjct: 595 YVDG---AANRETKLGKAGYVTNKGRQKVVTLTDTTNQKTELQAIYLALQDSGS------ 645
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L +++ P+ + I+++I E I + W+P+H GI G
Sbjct: 646 -----EVNIVTDSQYALGIIQS--QPDKSESEIVMQIIEELIKKEKIYLAWVPAHKGIGG 698
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 699 NEQVDKLVSNG 709
>gi|443302753|gb|AGC82276.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRETKQGKAGYITDRGRQKIVPLTETTNQKTELHAIQJALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 592 ---VNIVTDSQYALGIIQ--AQPDKSESELVXQIIEQLIKKERVYLSWVPAHKGIGGNEQ 646
Query: 318 VDELAKNS 325
VD+L +
Sbjct: 647 VDKLVSSG 654
>gi|71794614|emb|CAI28854.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1434
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AIF+ L +
Sbjct: 1027 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELYAIFLALQDSGS------ 1077
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 1078 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEQLIGKDKVYLSWVPAHKGIGG 1130
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 1131 NEQVDKL 1137
>gi|407733083|gb|AFU26877.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI H+ S PE
Sbjct: 593 YVDGAASKETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|326416856|gb|ADZ73281.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAILLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESEIVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|148745891|emb|CAK49334.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQRTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|407733078|gb|AFU26873.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733093|gb|AFU26885.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI H+ S PE
Sbjct: 593 YVDGAASKETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|116195034|ref|XP_001223329.1| hypothetical protein CHGG_04115 [Chaetomium globosum CBS 148.51]
gi|88180028|gb|EAQ87496.1| hypothetical protein CHGG_04115 [Chaetomium globosum CBS 148.51]
Length = 487
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 139 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 198
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 199 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 234
>gi|378812675|gb|AFC60598.1| pol protein, partial [Human immunodeficiency virus]
Length = 1003
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q NE + +EL AI + L +
Sbjct: 596 YVDGAASREXKIGKAGYVTDRGRQKVXSLNETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IEKNKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 516 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG S+ Y+T+ Q NE + +EL AI + L S
Sbjct: 596 YVDGAASREXKIGKAGYVTDRGRQKVXSLNETTNQKTELHAIHLALQDSGS--------- 646
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IEKNKVYLSWVPAHKGIGGN 700
Query: 632 VQV 634
QV
Sbjct: 701 EQV 703
>gi|116179112|ref|XP_001219405.1| hypothetical protein CHGG_00184 [Chaetomium globosum CBS 148.51]
gi|88184481|gb|EAQ91949.1| hypothetical protein CHGG_00184 [Chaetomium globosum CBS 148.51]
Length = 498
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + ++K L +
Sbjct: 333 LSRLTASTWGLGPAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNK 392
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GA++++PI +L E PPL+ LA++ R++
Sbjct: 393 SLRIVAGAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 434
>gi|407733088|gb|AFU26881.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407733118|gb|AFU26905.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1000
Score = 45.8 bits (107), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI H+ S PE
Sbjct: 593 YVDGAASKETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 645 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 699
Query: 318 VDEL 321
VD+L
Sbjct: 700 VDKL 703
>gi|326416826|gb|ADZ73266.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAILLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESEIVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|110815949|sp|Q9QSR3.3|POL_HV1VI RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1430
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 1023 YVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLALQDSGS--------- 1073
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 1074 --EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGIGGNEQ 1129
Query: 318 VDEL 321
VD+L
Sbjct: 1130 VDKL 1133
>gi|425773268|gb|EKV11633.1| Transposon I factor, putative [Penicillium digitatum Pd1]
Length = 726
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRD-SVFICTDSKSSLLALKNI--MSPNHLV 284
E + FS+EL A ++H+ NT + +D ++ + T +K+++L L+N S V
Sbjct: 467 EQNPFSAELAA----MAHVLNTATG----LKDYTITLLTSNKAAVLTLRNPRQQSGQEFV 518
Query: 285 NNILVKINELKILNITVKFLWIPSH-----LGIA---GNVQVDELAKNSQNAPLLSMMTS 336
I I +L+ V+ W+P+ LG+A E A ++AP + T
Sbjct: 519 CRIYKLIKKLQRNGNHVQLRWVPASEDNKLLGLAREQARTSTQEDALLQEHAPRMKSTTL 578
Query: 337 EDLKSAI--KKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLR 392
+S + L ++ H K + + K R+ D L WK + V+ +LR
Sbjct: 579 NLARSQTVPRNTLPADVGKHAKRVDAALPGKHTRLLYDRLSWKEA--------TVLAQLR 630
Query: 393 IGHSHLT-HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
G + L + F + D C + +++H L CRK+ A R
Sbjct: 631 TGMARLNGYLFRINVADTDQCACGQTKETVEHFLFRCRKWTAHR 674
>gi|85700565|gb|ABC74677.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAANRETKKGKAGYVTDKGRQKIVSLTETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L ++ + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQALPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|407734586|gb|AFU28150.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|167832821|gb|ACA01985.1| pol protein [Human immunodeficiency virus 1]
Length = 728
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 552 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 602
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 603 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 653
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 654 GGNEQVDKLVSNG 666
>gi|451168897|gb|AGF31520.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 595 YVDGAANRDTKMGKAGYVTDKGRQKVVSITETTNQKAELQAIQLALQD-----SGPE--- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I EL I + W+P+H GI GN Q
Sbjct: 647 ---VNIVTDSQYALGIIQ--AQPDKSESEIVNQIIELLINKERIYLSWVPAHKGIGGNEQ 701
Query: 318 VDEL 321
VD+L
Sbjct: 702 VDKL 705
>gi|261330744|emb|CBH13729.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 711
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
IF DS+ + T ++ LA+ + + + V+ +++I + ++ H G+ N
Sbjct: 437 IFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRI-----RLQFVFGHCGVKRN 491
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-RIKEDTLLW 374
DE+AK + + P L D+ + K+ L SE V N R I +
Sbjct: 492 EVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLKSE-------EVHENTHRFGITGNHFPT 544
Query: 375 KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
K + R +E + R R+G S + ++L++ + PP C WCN Q
Sbjct: 545 KHKEELTREEETALARFRVGSSR-HYGWMLRKINPSVPPQCRWCNPQ 590
>gi|148745859|emb|CAK49318.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGASNRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 EQVDKLVSNG 710
>gi|26000265|gb|AAN75299.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + E + +EL AI + L S PE
Sbjct: 596 YVDG---AANRETKIGKAGYVTDKGRQKVVSFTETTNQKTELQAIQLALQD-----SGPE 647
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 648 ------VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|425778859|gb|EKV16962.1| Transposon I factor, putative [Penicillium digitatum PHI26]
Length = 726
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 98/224 (43%), Gaps = 32/224 (14%)
Query: 228 ENSVFSSELLAIFMLLSHICNTRSRPEYIFRD-SVFICTDSKSSLLALKNI--MSPNHLV 284
E + FS+EL A ++H+ NT + +D ++ + T +K+++L L+N S V
Sbjct: 467 EQNPFSAELAA----MAHVLNTATG----LKDYTITLLTSNKAAVLTLRNPRQQSGQEFV 518
Query: 285 NNILVKINELKILNITVKFLWIPSH-----LGIA---GNVQVDELAKNSQNAPLLSMMTS 336
I I +L+ V+ W+P+ LG+A E A ++AP + T
Sbjct: 519 CRIYKLIKKLQRNGNHVQLRWVPASEDNKLLGLAREQARTSTQEDALLQEHAPRMKSTTL 578
Query: 337 EDLKSAI--KKKLLSEWHLHWK--NNVINNKLRRIKEDTLLWKSSFDKDRRKEIVICRLR 392
+S + L ++ H K + + K R+ D L WK + V+ +LR
Sbjct: 579 NLARSQTVPRNTLPADVGKHAKRVDAALPGKHTRLLYDRLSWKEA--------TVLAQLR 630
Query: 393 IGHSHLT-HNFLLKREDPPLCEWCNVQLSIQHILLECRKFRASR 435
G + L + F + D C + +++H L CRK+ A R
Sbjct: 631 TGMARLNGYLFRINVADTDQCACGQTKETVEHFLFRCRKWTAHR 674
>gi|306477491|gb|ADM89120.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|306477483|gb|ADM89116.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|114430723|dbj|BAF31532.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|25166679|gb|AAN73483.1|AF484482_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ Y+T+ Q NE + +EL AI + L +
Sbjct: 1026 YVDGASNRETKLGKAGYVTDRGRQKIITLNETTNQQTELHAIHLALQDSGS--------- 1076
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ KI E I V W+P+H GI GN Q
Sbjct: 1077 --EVNIVTDSQYALGIIQ--AQPDKSESELVSKIIERLIGKDKVYLSWVPAHKGIGGNEQ 1132
Query: 318 VDEL 321
VD+L
Sbjct: 1133 VDKL 1136
>gi|306477487|gb|ADM89118.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|306477485|gb|ADM89117.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRGESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|306477479|gb|ADM89114.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 441 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD L
Sbjct: 548 VDRL 551
>gi|288558569|dbj|BAI68341.1| polyprotein [Human immunodeficiency virus 1]
Length = 326
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L +
Sbjct: 192 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 242
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 243 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 298
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 299 VDKLVSNG 306
>gi|212382623|gb|ACJ25629.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAANRETKKGRAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKKRVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|37221434|gb|AAQ89846.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 591 --EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERVYLAWVPAHKGIGGNEQ 646
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 647 VDKLVSNG 654
>gi|116195044|ref|XP_001223334.1| hypothetical protein CHGG_04120 [Chaetomium globosum CBS 148.51]
gi|88180033|gb|EAQ87501.1| hypothetical protein CHGG_04120 [Chaetomium globosum CBS 148.51]
Length = 686
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 45/315 (14%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 336 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 395
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQLGRNINRANLPRTVKSRLE 137
AE P+ R A+ + P ++P+++ RN R P +R+
Sbjct: 396 EAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKV-----RNTVRFVSPLQKIARVA 450
Query: 138 DLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL----------SSVAVKNAF 186
+ DR+ + I+ EY + PW + + K + +S +VK
Sbjct: 451 EGVRVDRM--ETIQ--EYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSVKKGI 506
Query: 187 FQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHI 246
G +++LF T S+T N V E + +++EL AI M L +
Sbjct: 507 VGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMALEKL 555
Query: 247 CNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI----TVK 302
P I + + T ++S+L A+ + +I+ +I +L L+ +V
Sbjct: 556 ------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRGNSVN 607
Query: 303 FLWIPSHLGIAGNVQ 317
FLWIP+ + A V+
Sbjct: 608 FLWIPAEIDFALGVR 622
>gi|373881381|gb|AEY78024.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDG---AANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS------ 590
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + P+ + I+ +I E I V W+P+H GI G
Sbjct: 591 -----EVNIVTDSQYALGIIH--AQPDKSESEIVSQIIEQLIQKERVYLSWVPAHKGIGG 643
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 644 NEQVDKLVSNG 654
>gi|59003569|gb|AAW83574.1| pol protein [Human immunodeficiency virus 1]
gi|212383190|gb|ACJ25888.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 599 YVDGAANRNTKTGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQDSGS--------- 649
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I I EL I V W+P+H GI GN
Sbjct: 650 --EVNIVTDSQYALGILQAQPDKSESELVNQI---IEEL-IKKERVYLSWVPAHKGIGGN 703
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 704 EQVDKLVSNG 713
>gi|37221432|gb|AAQ89845.1| pol protein [Human immunodeficiency virus 1]
Length = 657
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L +
Sbjct: 540 YVDGAANRETKSGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 591 --EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERVYLAWVPAHKGIGGNEQ 646
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 647 VDKLVSNG 654
>gi|71794624|emb|CAI28863.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1430
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ Y+T+ Q E + +EL AI++ L +
Sbjct: 1023 YVDGASNRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 1073
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 1074 --EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKNKVYLSWVPAHKGIGGN 1127
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 1128 EQVDKLVSNG 1137
>gi|407734561|gb|AFU28130.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407734571|gb|AFU28138.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407734581|gb|AFU28146.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407734591|gb|AFU28154.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407734556|gb|AFU28126.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|342320283|gb|EGU12224.1| Pol-like protein [Rhodotorula glutinis ATCC 204091]
Length = 1320
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 30/156 (19%)
Query: 195 NSLFCYTDGSKT------AANSGCAYITETESQVFK---------------LYNENSVFS 233
SLF Y+DGS A+ +G + +++ + K L +V++
Sbjct: 930 GSLFVYSDGSMGESGFVGASMAGRQWDGKSKVVLSKGEEVEVEGWETRSKGLGQHQTVYA 989
Query: 234 SELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVKI 291
EL I M L + T RP +I + D+ S+L L + S HL I
Sbjct: 990 GELEGIRMALHAVLQTADRPPHIL-----LSVDNTSALTHLTDPAPTSGQHLRLAIRGTF 1044
Query: 292 NELK--ILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
+LK ++ T+ W P H+G+AGN D AK++
Sbjct: 1045 EKLKRTCVSTTIILSWSPGHVGVAGNEVADLAAKDA 1080
>gi|157849808|gb|ABV89688.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ + NE + +EL AI + L S PE
Sbjct: 594 YVDG---AANRETKLGKAGYVTDRGRKKIVSLNETTNQKTELQAICIALQD-----SGPE 645
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 646 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGI 695
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 696 GGNEQVDKLVSNG 708
>gi|134252677|gb|ABO64928.1| pol protein [Human immunodeficiency virus 1]
Length = 726
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 597 YVDG---AANRETKLGKAGYVTDRGRQKVISLPETTNQKTELHAIYLALQDSGS------ 647
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 648 -----EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IGKDKVYLSWVPAHKGI 698
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 699 GGNEQVDKLVSNG 711
>gi|46486637|gb|AAS98743.1| pol protein [Human immunodeficiency virus 1]
gi|57338564|gb|AAW49358.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAANRETKKGRAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IKKKRVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|77416903|sp|P20876.3|POL_HV2ST RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1463
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS K + YIT+ +L + + +EL A M + T S P+ I
Sbjct: 1051 YTDGSCNKQSREGKAGYITDRGRDKVRLLEQTTNQQAELEAFAMAV-----TDSGPKANI 1105
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + +VN I+ E I + W+P+H GI GN
Sbjct: 1106 IVDSQYVM-----GIVAGQPTESESKIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 1156
Query: 317 QVDEL 321
+VD L
Sbjct: 1157 EVDHL 1161
>gi|306478257|gb|ADM89503.1| pol protein [Human immunodeficiency virus 1]
Length = 639
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T Q + + +EL AI++ L S PE
Sbjct: 232 YVDGASNRETKLGKAGYVTNRGRQKVISITDTTNQQTELQAIYLALQD-----SGPE--- 283
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V WIP+H GI GN Q
Sbjct: 284 ---VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLTWIPAHKGIGGNEQ 338
Query: 318 VDEL 321
VD L
Sbjct: 339 VDRL 342
>gi|5668940|gb|AAD46088.1|AF077336_2 pol polyprotein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 597 YVDGASNRETKKGKAGYVTDKGKQKVVSLTETTNQKAELQAIYLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 --EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIQKERVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|407734566|gb|AFU28134.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|393702206|gb|AFN16295.1| Tbingi protein [Trypanosoma brucei]
Length = 1657
Score = 45.4 bits (106), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 250 RSRPEY--IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIP 307
RS P IF DS+ + T ++ LA+ + + + V+ +++I + ++
Sbjct: 1083 RSTPSRLSIFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRI-----RLQFVF 1137
Query: 308 SHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-R 366
H G+ N DE+AK + + P L D+ + K+ L SE V N R
Sbjct: 1138 GHCGVKRNEVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSE-------EVHENTHRFG 1190
Query: 367 IKEDTLLWKSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
I + K + R +E + R R+G S + ++L++ + PP C WCN Q
Sbjct: 1191 ITGNHFPTKHKEELTREEETALARFRVGSSR-HYGWMLRKINPSVPPQCRWCNPQ 1244
>gi|56609302|gb|AAW03257.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ + P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQAL--PDRSESGIVNKIIEKLIEKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|256011210|gb|ACU55461.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q + + +EL AI++ L S PE
Sbjct: 596 YVDG---AANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQD-----SGPE 647
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 648 ------VNIVTDSQYALGIIQ--AQPDKSESEVVTQIIEQLIKKEKVYLTWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|326416894|gb|ADZ73300.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKIVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|195409334|gb|ACF95913.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q E + +EL AI++ L +
Sbjct: 595 YVDGAANRESKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 699
Query: 316 VQVDEL 321
Q+D+L
Sbjct: 700 EQIDKL 705
>gi|197257783|gb|ACH56098.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L
Sbjct: 595 YVDG---AANRETKLGKAGYVTDKGRQKVVSLTETTNQKTELHAIYLALQDSGT------ 645
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 646 -----EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGIGG 698
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 699 NEQVDKLVSNG 709
>gi|407734576|gb|AFU28142.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|164521195|gb|ABY60459.1| Gag-Pol-Nef protein [Expression vector MVA--89.6P-SIVGPN]
Length = 1405
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS K + YIT+ K+ + + +EL A M L T S P+ I
Sbjct: 1180 YTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMAL-----TDSGPKANI 1234
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++ S + LVN I+ E I + W+P+H GI GN
Sbjct: 1235 IVDSQYVM-----GIITGCPTESESRLVNQII----EEMIKKSEIYVAWVPAHKGIGGNQ 1285
Query: 317 QVDELAKNSQNAPLLSMMTSEDLKSA 342
++D L L +T D+ A
Sbjct: 1286 EIDHLVSQGIRQVLRKRITVLDIGDA 1311
>gi|18413533|emb|CAD21861.1| H25N7.04 [Trypanosoma brucei]
Length = 1657
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
IF DS+ + T ++ LA+ + + + V+ +++I + ++ H G+ N
Sbjct: 1091 IFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRI-----RLQFVFGHCGVKRN 1145
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-RIKEDTLLW 374
DE+AK + + P L D+ + K+ L SE V N R I +
Sbjct: 1146 EVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSE-------EVHENTHRFGITGNHFPT 1198
Query: 375 KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
K + R +E + R R+G S + ++L++ + PP C WCN Q
Sbjct: 1199 KHKEELTREEETALARFRVGSSR-HYGWMLRKINPSVPPQCRWCNPQ 1244
>gi|1339799|gb|AAB01352.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 1059
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS K + YIT+ +L + + +EL A M + T S P+ I
Sbjct: 647 YTDGSCNKQSREGKAGYITDRGRDKVRLLEQTTNQQAELEAFAMAV-----TDSGPKANI 701
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + +VN I+ E I + W+P+H GI GN
Sbjct: 702 IVDSQYVM-----GIVAGQPTESESKIVNQII----EEMIKKEAIYVAWVPAHKGIGGNQ 752
Query: 317 QVDEL 321
+VD L
Sbjct: 753 EVDHL 757
>gi|306477895|gb|ADM89322.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNKQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|306477673|gb|ADM89211.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|270301384|gb|ACZ69568.1| pol protein [Human immunodeficiency virus 1]
Length = 1013
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L +
Sbjct: 602 YVDGAASRETKKGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQDSGS--------- 652
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 653 --EVNIVTDSQYALGIIQ--AQPDKSESEIVTQIIEQLIKKERVYLSWVPAHKGIGGNEQ 708
Query: 318 VDEL 321
VD+L
Sbjct: 709 VDKL 712
>gi|148745855|emb|CAK49316.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 962
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L S PE
Sbjct: 594 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIQLALQD-----SGPE 645
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 646 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHKGIGG 697
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 698 NEQVDKL 704
>gi|115334423|dbj|BAF33162.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L S PE
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERIYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|115334393|dbj|BAF33135.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L S PE
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERIYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|114430813|dbj|BAF31613.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRKTKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430833|dbj|BAF31631.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|24181499|gb|AAN47119.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 599 YVDGAANRETKKGKAGYVTDRGRQKIVSLDETTNQKTELQAIQLALQD-----SGPE--- 650
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 651 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 703
Query: 316 VQVDEL 321
QVD+L
Sbjct: 704 EQVDKL 709
>gi|451170532|gb|AGF32932.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAASRETKKGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDKSESEIVTQIIEQLIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|31980417|dbj|BAC77738.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESGLVSQIIEKLIEKDKVYLSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|114430733|dbj|BAF31541.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430783|dbj|BAF31586.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311653|gb|AEN04349.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 441 YVDGASNRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 493 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IRKERVYLSWVPAHKGIGGN 545
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 546 EQVDKLVSNG 555
>gi|288558515|dbj|BAI68315.1| polyprotein [Human immunodeficiency virus 1]
Length = 328
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L +
Sbjct: 192 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 242
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 243 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 298
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 299 VDKLVSNG 306
>gi|212383257|gb|ACJ25918.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 591 YVDGAYNRDTKTGKAGYVTDRGRQKIVPLTETTNQKAELQAIQLALQE-----SGPE--- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 643 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 694
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 695 NEQVDKL 701
>gi|212382552|gb|ACJ25599.1| pol protein [Human immunodeficiency virus 1]
Length = 910
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 590 YVDGAANRDTKMGKAGYVTDRGRQKIVPLTETTNQKTELQAIQLALQD-----SGPE--- 641
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L + P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 642 ---VNIVTDSQYALGIIH--AQPDKSESELVSQIIEQLIRKERVYLSWVPAHKGIGGNEQ 696
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 697 VDKLVSNG 704
>gi|115334383|dbj|BAF33126.1| Pol [Human immunodeficiency virus 1]
gi|115334403|dbj|BAF33144.1| Pol [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L S PE
Sbjct: 592 YVDGAANRDTKIGKAGYVTDRGRQKVVSLTETTNQKSELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERIYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|114430683|dbj|BAF31496.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|42407251|dbj|BAD10860.1| pol-like protein Pol-2 [Tricholoma matsutake]
Length = 514
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIY---GSATQSSLSKLNTV 58
K+L + +L N GL+ L+ + V PIM YG ++ G+ + + L V
Sbjct: 9 KALTTTRAMGMLGNSVRGLTPMQKRLLYRSCVVPIMTYGLRLWHFKGARVKGVIKTLAQV 68
Query: 59 YHTALRIISGAYRTSPIESLYAENGQPPLE--TRRKILLANYGTRVKCNPSNPVSLILTH 116
A R I GA+RT+PI L + G P++ RR + + T + PS+P+ IL
Sbjct: 69 QSIAARWILGAFRTTPIGGLESIAGLLPMQLLLRRLVDRGVFRTPL-LAPSHPLRAILGP 127
Query: 117 AQLG 120
+G
Sbjct: 128 NHVG 131
>gi|154270463|ref|XP_001536086.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409890|gb|EDN05278.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 378
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 37/203 (18%)
Query: 267 SKSSLLALKNIMSP-NHLVNNILVKI-NELKILN---ITVKFLWIPSHLGIAGNVQVDEL 321
K +L AL ++ +P + +IL++I + L+ N + V+F WIP+H GI GN D+L
Sbjct: 93 GKVALGALLSLGTPLSSSGQSILLRIIDSLERANSQGLDVEFYWIPAHHGIEGNELADKL 152
Query: 322 AK--------NSQNAPLLSMMTSE-------------DLKSAIKKKLLSEWHLHWKNNVI 360
AK + + L+++ T + +S + ++ W W++
Sbjct: 153 AKEATGCKQRHGRRGKLITVDTDDAAATPDFLRHLISAARSELNRQTQERWEHDWEHETT 212
Query: 361 NNK---LRRIKEDTLLW-KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKREDP----PLC 412
L T+L S K IV ++R G L FL +R+ P LC
Sbjct: 213 GRATFTLTPTPSSTVLQLHDSLHKVLSSTIV--QMRTGKIGL-RQFLYERKVPDITDTLC 269
Query: 413 EWCNVQLSIQHILLECRKFRASR 435
E N +++H+LL C +F + R
Sbjct: 270 ECGNGNQTVRHVLLACPRFNSLR 292
>gi|451167710|gb|AGF30480.1| pol protein, partial [Human immunodeficiency virus 1]
gi|451167720|gb|AGF30489.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGASNRETKRGKAGYVTDRGRQKIVCLTETTNQKAELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|270209676|gb|ACZ64263.1| pol protine [Human immunodeficiency virus 1]
Length = 1005
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 598 YVDGAANRDTKKGKAGYVTDRGRQKAVSLTETTNQKAELQAI-----HLALQDSGPE--- 649
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 650 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKTRIYLSWVPAHKGIGGN 702
Query: 316 VQVDEL 321
QVD+L
Sbjct: 703 EQVDKL 708
>gi|256011208|gb|ACU55460.1| pol protein [Human immunodeficiency virus 1]
Length = 807
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ Y+T+ Q E + +EL AI++ L +
Sbjct: 555 YVDGAANXETKLGKAGYVTDRGKQKVVPLTETTNQKTELHAIYLALQDSGS--------- 605
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 606 --EVNIVTDSQYALGIIQAQPDRSDSELVNXIIEKL----IEKDKVYLSWVPAHKGIGGN 659
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 660 EQVDKLVSNG 669
>gi|114430803|dbj|BAF31604.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407734879|gb|AFU28398.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN Q+D+L N
Sbjct: 698 GGNEQIDKLVSNG 710
>gi|84043943|gb|AAQ76654.2| pol protein [Human immunodeficiency virus 1]
Length = 746
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRETKKGKAGYVTDRGRQKSIPLTETTNQKTELQAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|13517083|dbj|BAB40421.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1430
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 1023 YVDG---AANRETKLGKAGYVTDKGRQKVVSLTETTNQRTELHAIYLALQDSGS------ 1073
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 1074 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEKLIEKDKVYLSWVPAHKGIGG 1126
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 1127 NEQVDKLVSNG 1137
>gi|391379702|gb|AFM44332.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + +EL AI++ L +
Sbjct: 600 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLALQDSGS------ 650
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 651 -----EVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLINKEKVYLAWVPAHKGIGG 703
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 704 NEQVDKLVSNG 714
>gi|306477903|gb|ADM89326.1| pol protein [Human immunodeficiency virus 1]
gi|306477905|gb|ADM89327.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|114430743|dbj|BAF31550.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430773|dbj|BAF31577.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|22596455|gb|AAN03221.1|AF457078_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDKGRQKVVSLNETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQI---IEEL-IRKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|18413532|emb|CAD21860.1| H25N7.03 [Trypanosoma brucei]
Length = 1657
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
IF DS+ + T ++ LA+ + + + V+ +++I + ++ H G+ N
Sbjct: 1091 IFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRI-----RLQFVFGHCGVKRN 1145
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-RIKEDTLLW 374
DE+AK + + P L D+ + K+ L SE V N R I +
Sbjct: 1146 EVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSE-------EVHENTHRFGITGNHFPT 1198
Query: 375 KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
K + R +E + R R+G S + ++L++ + PP C WCN Q
Sbjct: 1199 KHKEELTREEETALARFRVGSSR-HYGWMLRKINPSVPPQCRWCNPQ 1244
>gi|16118292|gb|AAL12668.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q + + +EL AI++ L S PE
Sbjct: 597 YVDG---AANRETKLGKAGYVTNRGRQKVVSLTDTTNQKTELQAIYLALQD-----SGPE 648
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 649 ------VNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEQLIKKEKVYLAWVPAHKGIGG 700
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 701 NEQVDKL 707
>gi|344311621|gb|AEN04333.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 441 YVDG---AANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIXLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L L+ P+ + I+ +I E I V W+P+H GI G
Sbjct: 492 -----EVNIVTDSQYALGILQ--AQPDRSESEIVXQIIEELIKKERVYLTWVPAHKGIGG 544
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 545 NEQVDKL 551
>gi|224986193|gb|ACN74770.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|148361700|gb|ABQ59393.1| pol protein [Human immunodeficiency virus 1]
Length = 775
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 592 YVDG---AANRETKJGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS------ 642
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 643 -----EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IRKERVYLSWVPAHKGI 693
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 694 GGNEQVDKLVSNG 706
>gi|114430853|dbj|BAF31649.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|116201383|ref|XP_001226503.1| hypothetical protein CHGG_08576 [Chaetomium globosum CBS 148.51]
gi|88177094|gb|EAQ84562.1| hypothetical protein CHGG_08576 [Chaetomium globosum CBS 148.51]
Length = 674
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + ++K L +
Sbjct: 119 LSRLAASTWGLGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNK 178
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LR+++GA++ +PI +L E PPL+ LA++ TR++
Sbjct: 179 SLRMVAGAFKHTPIRNLETETWVPPLDLYLNKPLADFETRLQ 220
>gi|341571799|gb|AEK79560.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T E Q E + +EL AI + L S PE
Sbjct: 595 YVDG---AANRKTKLGKAGYVTNREKQKIVTIQETTNQKTELHAIQLALQD-----SGPE 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 647 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEQLIKKEKVYLTWVPAHKGIGG 698
Query: 315 NVQVDEL 321
N +VD+L
Sbjct: 699 NEKVDKL 705
>gi|326416800|gb|ADZ73253.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|306477907|gb|ADM89328.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|93210766|gb|ABF00734.1| truncated pol protein [Human immunodeficiency virus 1]
Length = 822
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 592 YVDGAANRDTKKGKAGYVTDRGRQKIVTLSETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|63014599|gb|AAY25756.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|6580988|gb|AAF18397.1|AF190127_5 Pol polyprotein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L S PE
Sbjct: 594 YVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQE-----SGPE--- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I W+P+H GI GN
Sbjct: 646 ---VNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKFYLSWVPAHKGIGGN 698
Query: 316 VQVDEL 321
QVD+L
Sbjct: 699 EQVDKL 704
>gi|22596432|gb|AAN03201.1|AF457075_2 pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AIF+ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIFLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDRVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|443303339|gb|AGC82569.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 540 YVDGASNRETKIGKAGYVTDRGRQKVVTLNETTNQKAELQAIQLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|409684521|gb|AFV34417.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|326416784|gb|ADZ73245.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|306477899|gb|ADM89324.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|114430663|dbj|BAF31478.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|116197136|ref|XP_001224380.1| hypothetical protein CHGG_05166 [Chaetomium globosum CBS 148.51]
gi|88181079|gb|EAQ88547.1| hypothetical protein CHGG_05166 [Chaetomium globosum CBS 148.51]
Length = 564
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 241 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 300
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 301 GAFKSTPIRNLETETWIPPLDLYLNKRLADFENRLQ 336
>gi|192335045|gb|ACF04033.1| pol protein [Human immunodeficiency virus 1]
Length = 1008
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q + + + +EL AI++ L +
Sbjct: 601 YVDGAAHRETKAGKAGYVTDRGRQKVVSFMDTTNQKTELQAIYLALQDSGS--------- 651
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ KI E I V W+P+H GI GN Q
Sbjct: 652 --EVNIVTDSQYALGIIQ--AQPDKSESELVSKIIEELIKKEKVYLAWVPAHKGIGGNEQ 707
Query: 318 VDEL 321
VD+L
Sbjct: 708 VDKL 711
>gi|407735882|gb|AFU29235.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1025
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIRKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|339507693|gb|AEJ81258.1| pol protein [Human immunodeficiency virus 1]
Length = 650
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L +
Sbjct: 531 YVDG---AANRBTKIGKAGYVTDRGRQKIXTLNETTNQKTELQAIHLALQDSGS------ 581
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P++ + ++ +I E I V W+P+H GI G
Sbjct: 582 -----EVNIVTDSQYALGIIQ--AQPDNSESELVNQIIEQLIQKERVYLSWVPAHKGIGG 634
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 635 NEQVDKL 641
>gi|327458237|gb|AEA76558.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + +EL AI++ L +
Sbjct: 441 YVDG---AANRETKLGKAGYVTDXGRQKVVSLTDTTNQKTELQAIYLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNI--MSPNHLVNNILVK-INELKILNITVKFLWIPSHLG 311
V I TDS+ +L +++ S + LVN I+ + IN+ KI W+P+H G
Sbjct: 492 -----EVNIVTDSQYALGIIQSQPDKSESELVNQIIEQLINKEKIY-----LAWVPAHKG 541
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 542 IGGNEQVDKLVSNG 555
>gi|326416832|gb|ADZ73269.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|326416782|gb|ADZ73244.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|110815948|sp|Q9Q720.3|POL_HV1V9 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1436
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L S PE
Sbjct: 1029 YVDGAANRETKMGKAGYVTDRGKQKIVSLTETTNQKTELQAIYLALQE-----SGPE--- 1080
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I W+P+H GI GN
Sbjct: 1081 ---VNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKFYLSWVPAHKGIGGN 1133
Query: 316 VQVDEL 321
QVD+L
Sbjct: 1134 EQVDKL 1139
>gi|17046773|gb|AAL34788.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAANRETKIGKAGYVTDRGRQKVVTLTETTNQKTELQAIRLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGITQAQPDKSESELVNQIIEQL----IKKEKVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|116205639|ref|XP_001228630.1| hypothetical protein CHGG_10703 [Chaetomium globosum CBS 148.51]
gi|88176831|gb|EAQ84299.1| hypothetical protein CHGG_10703 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 135/329 (41%), Gaps = 56/329 (17%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYH 60
KS + I++L L + LF A V P+MDY A ++ A + +LS LN
Sbjct: 893 KSWRPISLLSTLARQ-----------LFVATVAPVMDYAANVWMHACGEKALSWLNRAQK 941
Query: 61 TALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNP-SNPVSLILTHAQL 119
I+GA+RT+ + AE P+ R A+ + P ++P+++
Sbjct: 942 IGALAITGAFRTAATAVVEAEASIYPVRERHAQAAASLWINIHTLPGTHPLAMKKV---- 997
Query: 120 GRNINRANLPRTVKSRLEDLQIFDRISAQVIKRDEY-IAPWELSVPEIIYLTSEKKENL- 177
RN R P +R+ + DR+ + I+ EY + PW + + K +
Sbjct: 998 -RNTVRFVSPLQKIARVAEGVRVDRM--ETIQ--EYAVPPWAPRLRPTLEADRGKAAEMV 1052
Query: 178 ---------SSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNE 228
+S +VK G ++ LF T S+T N V E
Sbjct: 1053 NKISGIVIATSSSVKKGIVGMGGLARDILFNRT--SETVTNYAV---------VLGTREE 1101
Query: 229 NSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNIL 288
+ +++EL AI M L + P I + + T ++S+L A+ + +I+
Sbjct: 1102 QNPYTAELAAIAMALEKL------PASICHRHITVITRNQSALAAVGQPRQQSG--QSII 1153
Query: 289 VKINELKILNI----TVKFLWIPSHLGIA 313
+I +L L+ +V FLWIP+ + A
Sbjct: 1154 RQIYDLARLHRQRGNSVNFLWIPAEIDFA 1182
>gi|56609328|gb|AAW03280.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESGIVNKIIEKLIEKERVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NKQVDKLVSNG 710
>gi|326416798|gb|ADZ73252.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|306477909|gb|ADM89329.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|93210983|gb|ABF00929.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L S PE
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQD-----SGPE 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S +VN I+ K+ E + + ++ W+P+H GI
Sbjct: 647 ------VNIVTDSQYALGIIQAQPDRSEAEIVNQIIEKLIEKERVYLS----WVPAHKGI 696
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 697 GGNEQVDKL 705
>gi|116200341|ref|XP_001225982.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
gi|88179605|gb|EAQ87073.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
Length = 1647
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 1324 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 1383
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 1384 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 1419
>gi|391379712|gb|AFM44341.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L
Sbjct: 595 YVDGAANRETKSGKAGYVTDRGRQKVVPLADTTNQKTELQAIYLALQD-----------S 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L L+ P+ + ++ +I E IL V W+P+H GI GN +
Sbjct: 644 ESEVNIVTDSQYALGILQ--AQPDKSESELVSQIIEQLILKEKVYLAWVPAHKGIGGNER 701
Query: 318 VDEL 321
VD+L
Sbjct: 702 VDKL 705
>gi|326416816|gb|ADZ73261.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|306477911|gb|ADM89330.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|306477901|gb|ADM89325.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|306477897|gb|ADM89323.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|306477893|gb|ADM89321.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|114430713|dbj|BAF31523.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430903|dbj|BAF31694.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|56609262|gb|AAW03221.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESGIVNKIIEKLIEKERVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NEQVDKLVSNG 710
>gi|212382730|gb|ACJ25675.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKIVTLNETTNQKTELQAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKEKVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|133711120|gb|ABO36263.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q + E + +EL AI + L
Sbjct: 594 YVDGAGNRETKQGKAGYVTDKGRQKIVSFTETTNQKTELHAIHLALQD-----------S 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VN I+ KI E + + ++ W+P+H GI GN
Sbjct: 643 ESEVNIVTDSQYALGIIQAQPDRSDSEIVNQIIEKIIEKERVYLS----WVPAHKGIGGN 698
Query: 316 VQVDEL 321
Q+D+L
Sbjct: 699 EQIDKL 704
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DG+ + Y+T+ Q + E + +EL AI + L S +E
Sbjct: 594 YVDGAGNRETKQGKAGYVTDKGRQKIVSFTETTNQKTELHAIHLALQ-----DSESE--- 645
Query: 574 RDSIFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
+ I TDS+ +L + + S + +VN I+ KI E + + ++ W+P+H GI GN
Sbjct: 646 ---VNIVTDSQYALGIIQAQPDRSDSEIVNQIIEKIIEKERVYLS----WVPAHKGIGGN 698
Query: 632 VQV 634
Q+
Sbjct: 699 EQI 701
>gi|116205820|ref|XP_001228719.1| hypothetical protein CHGG_02203 [Chaetomium globosum CBS 148.51]
gi|88182800|gb|EAQ90268.1| hypothetical protein CHGG_02203 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 687 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 746
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI L E PPL+ LA++ R++
Sbjct: 747 GAFKSTPIRDLETETWVPPLDLYLNKRLADFENRLQ 782
>gi|443303111|gb|AGC82455.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + N Y+T+ Q E + +EL AI + L +
Sbjct: 540 YVDGAANRETKNGKAGYVTDRGRQKIVTLTETTNQKTELQAIQLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----ITKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|21898538|ref|NP_663784.1| gag-pol fusion polyprotein [Human immunodeficiency virus 2]
gi|158931163|sp|P18096.4|POL_HV2BE RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1550
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL M L+ S P+ I
Sbjct: 1051 YTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALAD-----SGPKVNI 1105
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I V W+P+H GI GN
Sbjct: 1106 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAVYVAWVPAHKGIGGNQ 1156
Query: 317 QVDEL 321
+VD L
Sbjct: 1157 EVDHL 1161
>gi|56609292|gb|AAW03248.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VNNI+ K+ E + + ++ W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESGIVNNIIEKLIEKERVYLS----WVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 KQVDKLVSNG 710
>gi|14579614|gb|AAK69331.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGASNKETKKGKAGYVTDKGRQKVVSLTETTNQKAELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|326416850|gb|ADZ73278.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|261327044|emb|CBH10019.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
Length = 1585
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
IF DS+ + T ++ LA+ + + + V+ +++I + ++ H G+ N
Sbjct: 1019 IFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKIRI-----RLQFVFGHCGVKRN 1073
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-RIKEDTLLW 374
DE+AK + + P L D+ + K+ L SE V N R I +
Sbjct: 1074 EVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSE-------EVHENTHRFGITGNHFPT 1126
Query: 375 KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
K + R +E + R R+G S + ++L++ + PP C WCN Q
Sbjct: 1127 KHKEELTREEETALARFRVGSSR-HYGWMLRKINPSVPPQCRWCNPQ 1172
>gi|17046593|gb|AAL34626.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAASRDTKIGKAGYVTDRGKQKIITLTETTNQKTELQAIQLALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P++ + ++ +I E I V W+P+H GI GN Q
Sbjct: 644 ---VNIVTDSQYALGIIQ--AQPDNSESELVNQIIEQLIQKERVYLSWVPAHKGIGGNEQ 698
Query: 318 VDEL 321
VD+L
Sbjct: 699 VDKL 702
>gi|326416836|gb|ADZ73271.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|90903153|gb|ABE02165.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLPETTNQKAELHAIYLALQESGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + ++ W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKDKIYLS----WVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN Q+D+L N
Sbjct: 698 GGNEQIDKLVSNG 710
>gi|4539034|emb|CAB39916.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 1026 YVDGAANRETKKGKAGYVTDRGRQKVVFLTETTNQKTELQAIHLALQDSGS--------- 1076
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++++ +I E I V W+P+H GI GN Q
Sbjct: 1077 --EVNIVTDSQYALGIIQ--AQPDKSESDLVNQIIEQLIQKDKVYLTWVPAHKGIGGNEQ 1132
Query: 318 VDEL 321
VD+L
Sbjct: 1133 VDKL 1136
>gi|992561|gb|AAA99879.1| pol polyprotein, partial [Human immunodeficiency virus 1]
Length = 1027
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+TE Q +E + +EL+AI + L
Sbjct: 610 YVDG---AANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQD--------- 657
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+++V I TDS+ +L + + P + I+ +I E V W+P+H GI G
Sbjct: 658 --SKETVNIVTDSQYALGVISS--QPTQSESPIVQQIIEELTKKEQVYLTWVPAHKGIGG 713
Query: 315 NVQVDEL 321
N ++D+L
Sbjct: 714 NEKIDKL 720
>gi|326416840|gb|ADZ73273.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|306477913|gb|ADM89331.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|56609242|gb|AAW03203.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESGIVNKIIEKLIEKERVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NKQVDKLVSNG 710
>gi|256011042|gb|ACU55377.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 594 YVDGAASRETKMGKAGYVTDRGRQKVVSLTETTNQKTELQAIYLALKDSGS--------- 644
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + K S + +VN I I EL I V W+P+H GI GN
Sbjct: 645 --EVNIVTDSQYALGIIQAKPDKSESEIVNQI---IEEL-IKKEKVYLSWVPAHKGIGGN 698
Query: 316 VQVDEL 321
QVD+L
Sbjct: 699 EQVDKL 704
>gi|164415900|gb|AAU14985.2| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 595 YVDG---AANRETKLGKAGYVTDKGKQKIITLTETTNQKTELQAIQLALQD-----SGPE 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 647 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEQLIKKEKVYLSWVPAHKGIGG 698
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 699 NEQVDKL 705
>gi|110815945|sp|Q9WC54.3|POL_HV1S2 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1432
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q + + +EL AI++ L
Sbjct: 1025 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLAL-------------- 1070
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
RDS V I TDS+ +L + + S + LVN I I EL I V W+P+H GI
Sbjct: 1071 RDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKVYLSWVPAHKGI 1126
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 1127 GGNEQVDKL 1135
>gi|429249620|gb|AFZ77854.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAANKETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|373881369|gb|AEY78016.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L S PE
Sbjct: 540 YVDGAANRETKKGKAGYVTDRGRQKIVSLSETTNQKTELQAICLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 592 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIRKERVYLSWVPAHKGIGGNEQ 646
Query: 318 VDELAKNS 325
VD+L +
Sbjct: 647 VDKLVSSG 654
>gi|326416842|gb|ADZ73274.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|288899148|gb|ADC67106.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q +E + +EL AI + L +T
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGRQRVVSLSETTNQKTELHAIHLALQDSGST----- 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIQKDKVYLSWVPAHKGIGG 698
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 699 NEQVDKL 705
>gi|117643942|gb|ABK51636.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
+V I TDS+ +L ++ P++ ++++ +I E I V W+P+H GI GN Q
Sbjct: 647 --AVNIVTDSQYALGIIQ--AQPDNSESDLVNQIIEQLIQKDQVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+TE Q +E + +EL+AI + L
Sbjct: 1027 YVDG---AANRETKLGKAGYVTEQGKQKIIKLDETTNQKAELMAILLALQD--------- 1074
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+++V I TDS+ +L + + P + I+ +I E V W+P+H GI G
Sbjct: 1075 --SKETVNIVTDSQYALGVISS--QPTQSESPIVQQIIEELTKKEQVYLTWVPAHKGIGG 1130
Query: 315 NVQVDEL 321
N ++D+L
Sbjct: 1131 NEKIDKL 1137
>gi|114430793|dbj|BAF31595.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|374349882|gb|AEZ35610.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 945
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L S PE
Sbjct: 538 YVDG---AANRETKLGKAGYVTDRGRQKAVSLTETTNQKTELHAIYLALQD-----SGPE 589
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 590 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGG 641
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 642 NEQVDKL 648
>gi|326416846|gb|ADZ73276.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYITDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|189310224|emb|CAP72504.1| Pol protein [SIV-wrc Pbt-05GM-X02]
Length = 1012
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 16/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DGS K + Y T+T +++ K+ N + +EL+A+ M L
Sbjct: 610 YIDGSANKESKEGKAGYWTKTRNKIQKITNTTNQ-QTELIALRMALEDSS---------- 658
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
D V I TDS+ L +K+ P + ++ +I +L + W+P+H GI GN +
Sbjct: 659 -DKVNIITDSQYVLGIIKD--HPTQSESPLMQEIIDLLKGKEEIYITWVPAHKGIGGNTE 715
Query: 318 VDEL 321
+D L
Sbjct: 716 IDAL 719
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 16/124 (12%)
Query: 516 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIF 573
Y DGS K + Y T+T +++ K+ N + +EL+A+ M L SS
Sbjct: 610 YIDGSANKESKEGKAGYWTKTRNKIQKITNTTNQ-QTELIALRMALED----SS------ 658
Query: 574 RDSIFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 633
D + I TDS+ L +K+ P + ++ +I +L + W+P+H GI GN +
Sbjct: 659 -DKVNIITDSQYVLGIIKD--HPTQSESPLMQEIIDLLKGKEEIYITWVPAHKGIGGNTE 715
Query: 634 VPFL 637
+ L
Sbjct: 716 IDAL 719
>gi|4336331|gb|AAD17757.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q + + +EL AI++ L
Sbjct: 594 YVDGASNRETKTGKAGYVTDKGRQKVVTLTDTTNQKTELHAIYLAL-------------- 639
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
RDS V I TDS+ +L + + S + LVN I I EL I V W+P+H GI
Sbjct: 640 RDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKVYLSWVPAHKGI 695
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 696 GGNEQVDKL 704
>gi|116205930|ref|XP_001228774.1| hypothetical protein CHGG_02258 [Chaetomium globosum CBS 148.51]
gi|88182855|gb|EAQ90323.1| hypothetical protein CHGG_02258 [Chaetomium globosum CBS 148.51]
Length = 1485
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 53/315 (16%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 1024 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 1083
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLED 138
AE P+ R A+ + P TH + + RT +
Sbjct: 1084 EAEASIYPVRERHAQAAASLWINIHTLPG-------THPLATKKV------RTTVRFVSP 1130
Query: 139 LQIFDRISAQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAV 182
LQ R++ V + R E I PW + + K + +S +V
Sbjct: 1131 LQKIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSV 1190
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
K G +++LF T S+T N V E + +++EL AI M
Sbjct: 1191 KKGIVGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMA 1239
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI--- 299
L + P I + + T ++S+L A+ + +I+ +I +L L+
Sbjct: 1240 LEKL------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRG 1291
Query: 300 -TVKFLWIPSHLGIA 313
+V FLWIP+ + A
Sbjct: 1292 NSVNFLWIPAEIDFA 1306
>gi|388332011|gb|AFK29836.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQRTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|306478279|gb|ADM89514.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRETKSGKAGYVTDRGRQKIVSITDTTNQKTELHAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLINKERIYLTWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|281191167|gb|ADA57091.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1009
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 602 YVDGAANRETKMGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQDSGS--------- 652
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L +++ P+ ++I+ +I E I V W+P+H GI GN Q
Sbjct: 653 --EVNIVTDSQYALGIIQS--QPDKSESDIVNQIIEQLIKKERVYLSWVPAHKGIGGNEQ 708
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 709 VDKLVSNG 716
>gi|256011762|gb|ACU55737.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q N+ + +EL AI++ L
Sbjct: 596 YVDG---AANRETKLGKAGYVTNRGRQKVVTLNDTTNQKTELQAIYLAL----------- 641
Query: 255 YIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L ++ P+ + ++ +I E I V W+P+H G
Sbjct: 642 ---QDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKG 696
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 697 IGGNEQVDKLVSNG 710
>gi|209156841|gb|ACI39897.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELQAILIALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ K+ W+P+H GI G
Sbjct: 648 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKVY-----LSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|114430753|dbj|BAF31559.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|116221958|ref|XP_001230263.1| hypothetical protein CHGG_11113 [Chaetomium globosum CBS 148.51]
gi|88175385|gb|EAQ82861.1| hypothetical protein CHGG_11113 [Chaetomium globosum CBS 148.51]
Length = 406
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 166 KTWGMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPAKKGITKALGKAQNKSLRIVA 225
Query: 68 GAYRTSPIESLYAENGQPPLE 88
GA++++PI +L E PPL+
Sbjct: 226 GAFKSTPIRNLETETWVPPLD 246
>gi|68522095|gb|AAY98686.1| pol protein [Human immunodeficiency virus 1]
Length = 1015
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L +
Sbjct: 604 YVDGAANRETKIGKAGYVTDRGRQKIVSLSETTNQKTELQAIQLALQDSGS--------- 654
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ EL I V W+P+H GI GN
Sbjct: 655 --EVNIVTDSQYALGIIQAQPDKSESELVNQII----ELLIKKERVYLSWVPAHKGIGGN 708
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 709 EQVDKLVSNG 718
>gi|343426443|emb|CBQ69973.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 2595
Score = 45.1 bits (105), Expect = 0.11, Method: Composition-based stats.
Identities = 58/234 (24%), Positives = 101/234 (43%), Gaps = 27/234 (11%)
Query: 130 RTVKSRLEDLQIFDRISAQVIKRDEYIAPWELSVPEIIYLTSEKKENLSSVAVKNAFFQF 189
R +++ L L +RI APWE P +++ S K+E S+A+ ++
Sbjct: 2034 RALRTALPRLGTVERIDIGTA------APWE-RFPLTVHIASNKEE---SIALHSSALS- 2082
Query: 190 KGENQNSLFCYTDGSKTAANSGCAYIT---ETESQVFK--LYNEN-SVFSSELLAIFMLL 243
+ ++ YTDGS++ + G + E QV + L ++ +F +EL AI L
Sbjct: 2083 --RHADAWVVYTDGSRSTSGVGAGAVVIRPGLEPQVIETPLSSDGFDIFEAELEAIGKGL 2140
Query: 244 SHICNTRSRPEYIFRDSVFIC-TDSKSSLLALKNIMSPNHLVNN-----ILVKINELKIL 297
+ P R S +C TDS ++L L S + I L+ L
Sbjct: 2141 NACIREYGSPP-ASRPSTILCFTDSCAALQRLTTSWSSDRRSGQRQALFISAACATLRRL 2199
Query: 298 NITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMT-SEDLKSAIKKKLLSE 350
V+ W+ H G+ GN + D A+ + +A + T +E + ++ K L+E
Sbjct: 2200 GAEVQLRWVAGHHGVPGNERADLAARTAASAERTNEATLAEQVSISVVKARLAE 2253
>gi|443700141|gb|ELT99252.1| hypothetical protein CAPTEDRAFT_193728 [Capitella teleta]
Length = 337
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 283 LVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325
++++I V +N N+ V FLWIPSH GI GN D LAK S
Sbjct: 26 IISDIQVALNVAANSNVDVSFLWIPSHCGIQGNEAADALAKAS 68
>gi|56609272|gb|AAW03230.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKPELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + +VNNI+ K+ E + + ++ W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSESEIVNNIIEKLIEKERVYLS----WVPAHKGIGGN 700
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 701 KQVDKLVSNG 710
>gi|407740387|gb|AFU33001.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI++ L
Sbjct: 596 YVDGAASKETKQGRAGYVTDKGRQKVVSLTETTNQKTELHAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI G
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERIYLAWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|407735874|gb|AFU29228.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|282598053|gb|ADA83294.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE 647
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 648 ------VNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|256011052|gb|ACU55382.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q + + +EL AI++ L
Sbjct: 594 YVDGASNKETKLGKAGYVTDRGRQKVISLTDTTNQKTELQAIYLAL-------------- 639
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ KI E I+ V W+P+H GI G
Sbjct: 640 QDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSKIIEELIMKEKVYLAWVPAHKGIGG 697
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 698 NEQVDKL 704
>gi|114430673|dbj|BAF31487.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|116198447|ref|XP_001225035.1| hypothetical protein CHGG_07379 [Chaetomium globosum CBS 148.51]
gi|88178658|gb|EAQ86126.1| hypothetical protein CHGG_07379 [Chaetomium globosum CBS 148.51]
Length = 712
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 10 LKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHT 61
L L TWGL A ++ +R + YGA + G + ++K L +
Sbjct: 451 LSRLAASTWGLGLAKAREVYTKCIRSALAYGAPSFHILTDVGGEPVKKGITKALGKAQNK 510
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
+LRI++GA++ +PI +L E PPL+ LA++ TR++
Sbjct: 511 SLRILAGAFKYTPIRNLETEAWVPPLDLYLNKRLADFETRLQ 552
>gi|409181621|gb|AFV26841.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1012
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 605 YVDG---AANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS------ 655
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 656 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKEKVYLSWVPAHKGIGG 708
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 709 NEQVDKLVSNG 719
>gi|212382550|gb|ACJ25598.1| pol protein [Human immunodeficiency virus 1]
Length = 906
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 590 YVDGAANRDTKMGKAGYVTDRGRQKVVPLTETTNQKTELQAIQLALQD-----SGPE--- 641
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L + P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 642 ---VNIVTDSQYALGIIH--AQPDKSESELVSQIIEQLIRKERVYLSWVPAHKGIGGNEQ 696
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 697 VDKLVSNG 704
>gi|168208527|gb|ACA21828.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 594 YVDGAANRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAIHLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++++ +I E I+ V W+P+H GI GN Q
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDKSESDLVNQIIEQLIMKDKVYLSWVPAHKGIGGNEQ 700
Query: 318 VDEL 321
VD+L
Sbjct: 701 VDKL 704
>gi|148469878|gb|ABQ65869.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|114430643|dbj|BAF31460.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735906|gb|AFU29256.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735890|gb|AFU29242.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311892|gb|AEN04468.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 441 YVDG---AANRETKLGKAGYVTDKGRQKVVSLTETTNQKTELQAIWLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 492 -----EVNIVTDSQYALGIIQ--AQPDKSESELVXQIIEELIKKERVYLSWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|319429327|gb|ADV56940.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDGAANRETKQGKAGYVTDRGRQKIVSLTETTNQKTELQAIYLALQDSGS--------- 590
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + J+ +I E I V W+P+H GI GN Q
Sbjct: 591 --EVNIVTDSQYALGIIQ--AQPDKSESEJVNQIIEELIXKERVYLSWVPAHKGIGGNEQ 646
Query: 318 VDEL 321
VD+L
Sbjct: 647 VDKL 650
>gi|281331908|emb|CAY83124.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus 1]
Length = 1433
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y T+ Q E + +EL AI++ L
Sbjct: 1026 YVDGAANRETKQGKAGYXTDRGRQKVVSLTETTNQKTELQAIYLALQDSGA--------- 1076
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 1077 --EVNIVTDSQYALGIIQAQPDTSESELVNQIIEQL----IQKDKVYLSWVPAHKGIGGN 1130
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 1131 EQVDKLVSNG 1140
>gi|409180109|gb|AFV26131.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1019
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
Y DGS + YIT+ KL + + +EL A M + T S PE I
Sbjct: 607 YVDGSCNRQTKVGKAGYITDRGKDKVKLLEQTTNQQAELEAFLMAV-----TDSGPEANI 661
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S + +VN I+ E I + W+P+H GI GN
Sbjct: 662 IVDSQYVM-----GIVAGQPTESESRVVNQII----EEMIKKTAIYVAWVPAHKGIGGNQ 712
Query: 317 QVDEL 321
++D L
Sbjct: 713 EIDHL 717
>gi|407740372|gb|AFU32989.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407740377|gb|AFU32993.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407740382|gb|AFU32997.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI++ L
Sbjct: 596 YVDGAASKETKQGRAGYVTDKGRQKVVSLTETTNQKTELHAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI G
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERIYLAWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|112497902|gb|ABI20303.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKXGKAGYVTDRGRQKVVSITDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ SL ++ P+ + ++ +I E I + W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYSLGIIQ--AQPDKSESELVSQIIEQLIKKEKIYLAWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430693|dbj|BAF31505.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|443302767|gb|AGC82283.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 947
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRENKEGKAGYVTDRGRQKIISLTETTNQKTELQAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDEL 321
QVD+L
Sbjct: 645 EQVDKL 650
>gi|158380348|gb|ABW37386.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 592 YVDGAASRETKTGKAGYVTDRGRQKIISLTETTNQKTELQAIYLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 695
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 696 NEQVDKL 702
>gi|407733146|gb|AFU26928.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI + L +
Sbjct: 597 YVDGAASRETKQGKAGYVTDRGRQKVVSLSETTNQKTELHAIHLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 --EVNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|358022907|gb|AEU03928.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L+ I + +
Sbjct: 597 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLSLARIQDQK---- 649
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ + + L+KI E I V W+P+H GI G
Sbjct: 650 ------VNIVTDSQICIRESFRAHPDRSEIRVSLIKITEKLIEKDKVYLSWVPAHKGIGG 703
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 704 NEQVDKLVSNG 714
>gi|407740367|gb|AFU32985.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI++ L
Sbjct: 596 YVDGAASKETKQGRAGYVTDKGRQKVVSLTETTNQKTELHAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ +I E I + W+P+H GI G
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKERIYLAWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|114430633|dbj|BAF31451.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|409181591|gb|AFV26814.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1006
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L
Sbjct: 599 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQD-----------S 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
R V I TDS+ +L + P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 RSEVNIVTDSQYALGIIH--AQPDRSESEIVSQIIEKLIEKEKVYLSWVPAHKGIGGNEQ 705
Query: 318 VDEL 321
VD+L
Sbjct: 706 VDKL 709
>gi|344311721|gb|AEN04383.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 441 YVDG---AANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V + TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 493 ------VNVVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGI 542
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 543 GGNEQVDKLVSNG 555
>gi|121645185|gb|ABM63546.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 595 YVDGAAYRETKKGKAGYVTDRGRQKVVSLTETTNQKTELQAINLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + K S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 646 --EVNIVTDSQYALGIIQAKPDKSESELVNQIIEQL----IKKEKVYLSWVPAHKGIGGN 699
Query: 316 VQVDELAKNS 325
QVD L N
Sbjct: 700 EQVDRLVSNG 709
>gi|148745867|emb|CAK49322.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 963
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + SEL AI + L +
Sbjct: 595 YVDG---AANRETKLGKAGYVTDRGKQKIITLTETTNQKSELQAIHLALQDSGS------ 645
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 646 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEQL----IKKEKVYLSWVPAHKGI 696
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 697 GGNEQVDKLVSNG 709
>gi|409181571|gb|AFV26796.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|407735898|gb|AFU29249.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKQGKAGYVTDRGRQKAVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407733156|gb|AFU26936.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI + L +
Sbjct: 597 YVDGAASRETKQGKAGYVTDRGRQKVVSLSETTNQKTELHAIHLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 --EVNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|306416242|gb|ADM86968.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|148469907|gb|ABQ65895.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 598 YVDG---AANRETKIGKAGYVTDRGKQKVVPLTETTNQKTELHAIHLALQDSGS------ 648
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 649 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGG 701
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 702 NEQVDKLVSNG 712
>gi|427792937|gb|JAA61920.1| Putative tick transposon, partial [Rhipicephalus pulchellus]
Length = 1319
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 99/249 (39%), Gaps = 22/249 (8%)
Query: 194 QNSLFCYTDGS----KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNT 249
+ L +TDGS +A + C + + +L S ++EL + + H+ T
Sbjct: 1040 RGHLSVFTDGSVRDSPRSAAAACVIPSTGTTIRCRLPFHASSTAAELAGLHLAADHLAAT 1099
Query: 250 RSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 309
P + V I DS+ +L AL V + K+ + + + W+PSH
Sbjct: 1100 ---PPQL---PVAILCDSRPALQALLQPDQAGITVALLHAKLTAIGASGVHLSLHWLPSH 1153
Query: 310 LGIAGNVQVDELAKNSQNA--PLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRI 367
+GIAGN + D AK + + P+ + D ++LL H V + K
Sbjct: 1154 VGIAGNEEADAAAKAAHHGDTPVTKAVAQSDYSRQRLRQLLPT--AHPDTRVASGKPPPP 1211
Query: 368 KEDTLLWKSSFDKDRRKEIVICRLRIGHS-HLTHNFLLKREDPPLCEWCNVQLSIQHILL 426
+T L DR + ++ RLR G + + R P C C +++HI+
Sbjct: 1212 LPETGL-------DRCERRLLLRLRTGSAWPAARMYATGRCSSPACRRCGDDETLEHIIC 1264
Query: 427 ECRKFRASR 435
C A R
Sbjct: 1265 SCPALAAER 1273
>gi|5668912|gb|AAD46066.1|AF076474_2 pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI H+ S PE
Sbjct: 595 YVDGAANRETKQGKAGYVTDRGRQKIVSLTETTNQRTELQAI-----HLALQDSGPE--- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IQKNKVYLSWVPAHKGIGGN 699
Query: 316 VQVDEL 321
+VD+L
Sbjct: 700 EKVDKL 705
>gi|17046643|gb|AAL34671.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L
Sbjct: 598 YVDGAANRETKKGKAGYVTDRGRQKVVTLTETTNQKTELQAIQLALQD-----------S 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 647 ESEVNIVTDSQYALGIIQAQPDKSESELVNQI---IGEL-IKKERVYLSWVPAHKGIGGN 702
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 703 EQVDKLVSNG 712
>gi|344311812|gb|AEN04428.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 441 YVDGAANRETKXGKAGYVTDRGRQKVITLNETTNQKTELQAIQLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEELIKKEXVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|212382639|gb|ACJ25637.1| pol protein [Human immunodeficiency virus 1]
Length = 760
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 441 YVDG---AANRDTKIGKAGYVTDRGRQKVVSLTETTNQKTELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 493 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGI 542
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 543 GGNEQVDKLVSNG 555
>gi|148469917|gb|ABQ65904.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NEQVDKLVSNG 710
>gi|114431096|dbj|BAF31352.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430623|dbj|BAF31442.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|38491668|gb|AAR22060.1| pol protein [Human immunodeficiency virus 1]
Length = 1006
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN YIT+ Q E + +EL AI++ L +
Sbjct: 599 YVDG---AANRETKLGKAGYITDKGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 649
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI
Sbjct: 650 -----EVNIVTDSQYALGIIQAQPDRSDSELVNQIIEKLIEKE----KVYLSWVPAHKGI 700
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 701 GGNEQVDKL 709
>gi|288899146|gb|ADC67105.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q + + +EL AI++ L +
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTDTTNQKTELQAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESELVSQIIEQLINKEKVYLAWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|402534193|dbj|BAM37396.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 595 YVDGAANRETKQGKAGYVTDXGRQKVITLTETTNQKTELHAIHLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P++ + I+ +I E + + W+P+H GI GN Q
Sbjct: 646 --EVNIVTDSQYALGIIQ--AQPDNSESEIVNQIIEKLVGKDKIYLSWVPAHKGIGGNEQ 701
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 702 VDKLVSNG 709
>gi|306416248|gb|ADM86971.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|289187217|gb|ADC92188.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 186 FFQFKGEN-QNSLFCYTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAI 239
++Q + E + + Y DG AAN Y+T Q N+ + +EL AI
Sbjct: 525 WYQLEKEPIEGAETFYVDG---AANRETKLGKAGYVTNKGRQKVVTLNDTTNQKTELQAI 581
Query: 240 FMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI 299
++ L + V I TDS+ +L ++ P+ + ++ +I E I
Sbjct: 582 YLALQDSG-----------EEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKE 628
Query: 300 TVKFLWIPSHLGIAGNVQVDEL 321
V W+P+H GI GN QVD+L
Sbjct: 629 KVYLAWVPAHKGIGGNEQVDKL 650
>gi|14091532|gb|AAK53785.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|3252938|gb|AAD12088.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y T+ Q E + +EL AI++ L +
Sbjct: 592 YVDG---AANRETKIGKAGYATDRGRQKIVTLTETTNQKTELQAIYLALQDSGS------ 642
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V WIP+H GI
Sbjct: 643 -----EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWIPAHKGI 693
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 694 GGNEQVDKLVSNG 706
>gi|82571212|gb|ABB83989.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 603 YVDG---AANRETRIGQAGYVTDRGRQKVVTITETTNQKTELQAIQLALQD-----SGPE 654
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ SL + + S + LVN I I EL I V W+P+H GI
Sbjct: 655 ------VNIVTDSQYSLGIIQAQPDKSESELVNQI---IEEL-IKKERVYLSWVPAHKGI 704
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 705 GGNEQVDKL 713
>gi|344311723|gb|AEN04384.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 441 YVDG---AANRETKLGKAGYVTDRGRQKIVSLTETTNQKTELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V + TDS+ +L ++ P+ + J+ +I E I V W+P+H GI G
Sbjct: 493 ------VNVVTDSQYALGIIQ--AQPDKSESEJVNQIIEQLIKKERVYLSWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|306416178|gb|ADM86936.1| reverse transcriptase [Human immunodeficiency virus 1]
gi|306416370|gb|ADM87032.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|112351519|gb|ABI15304.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|31980407|dbj|BAC77729.1| Pol polyprotein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGMAGYVTDRGRQKVVSLNETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESGLVSQIIEKLIEKDKVYLSWVPAHKGIGG 699
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 700 NEQVDKL 706
>gi|38491556|gb|AAR21960.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V WIP+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IKKDKVYLSWIPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|270064180|gb|ACZ60060.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDGASNRETKKGKAGYVTDKGRQKAVTLTETTNQKAELQAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|110815939|sp|O41798.3|POL_HV19N RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN ++T+ Q E + +EL AI + L SRPE
Sbjct: 1028 YVDG---AANRETKLGKAGHVTDKGKQKIITLTETTNQKAELHAIQLALQD-----SRPE 1079
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 1080 ------VNIVTDSQYALGIIQAQPDRSGSELVNQIIEQL----IKKEKVYLSWVPAHKGI 1129
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 1130 GGNEQVDKL 1138
>gi|87083822|gb|ABD19484.1| pol protein [Simian immunodeficiency virus]
Length = 1006
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L S PE
Sbjct: 599 YVDG---AANRETKLGKAGYVTDRGKQKIIPLTETTNQKAELQAIQLALQD-----SGPE 650
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L L + S + LVN I+ + I V W+P+H GI
Sbjct: 651 ------VNIVTDSQYALGILQAQPDQSDSELVNQIIENL----IKKEKVYLTWVPAHKGI 700
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 701 GGNEQVDKL 709
>gi|374429882|gb|AEZ51190.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N YIT+ Q E + +EL AI++ L +
Sbjct: 596 YVDGAANRENKLGKAGYITDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430923|dbj|BAF31712.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|29409327|gb|AAM67403.1| pol protein [Human immunodeficiency virus 1]
Length = 998
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T Q E + +EL AI++ L S PE
Sbjct: 591 YVDG---AANRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE 642
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 643 ------VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEKLIEKEKVYLSWVPAHKGIGG 694
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 695 NEQVDKL 701
>gi|414152013|gb|AFW99171.1| polymerase polyprotein, partial [Equine infectious anemia virus]
Length = 1147
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 41/226 (18%)
Query: 120 GRNINRANLPRTVKSRLEDLQIFDRISAQVIKR----DEYIAP-------WELS------ 162
G+ I RAN +V L + + ++ + I R ++ P WE+
Sbjct: 537 GKKIMRANKGWSVVKNL--MLLLQHVATESITRIGVCPKFKVPFTKEQVIWEMQKGWYYA 594
Query: 163 -VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQ 221
+PEIIY S V + + + + + YTDG K AYIT +
Sbjct: 595 WLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGIAAYITSKGKK 646
Query: 222 VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPN 281
KL + ++E +AI M L ++ + I DS + C + + L L+ SP
Sbjct: 647 KQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDSYY-CWKNITEGLGLEGPDSPW 702
Query: 282 -HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ 326
++ NI K + F W+P H GI GN DE K S+
Sbjct: 703 WPIIQNIKTKE--------AIYFAWVPGHKGIYGNQLADEATKMSE 740
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 475 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 527
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 528 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
AYIT + KL + ++E +AI M L + + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDS-YYCWKNITEG 692
Query: 588 LALKNIMSP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L L+ SP ++ NI K + F W+P H GI GN
Sbjct: 693 LGLEGPDSPWWPIIQNIKTK--------EAIYFAWVPGHKGIYGN 729
>gi|407735493|gb|AFU28908.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311665|gb|AEN04355.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L S PE
Sbjct: 441 YVDGASNRETKAGKAGYVTDRGRQKVVTLTETTNQKSELQAIQLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 493 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERIYLSWVPAHKGIGGN 545
Query: 316 VQVDEL 321
QVD+L
Sbjct: 546 EQVDKL 551
>gi|17046813|gb|AAL34824.1| pol protein [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L
Sbjct: 600 YVDGAANRETKIGKAGYVTDKGRQKIVCLNETTNQKAELHAIQLAL-------------- 645
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L + + S + LVN I+ + IN+ KI W+P+H G
Sbjct: 646 QDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKEKIY-----LSWVPAHKG 700
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 701 IGGNEQVDKLVSNG 714
>gi|452005484|gb|EMD97940.1| hypothetical protein COCHEDRAFT_1209701 [Cochliobolus
heterostrophus C5]
Length = 231
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 289 VKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLL 348
+ +L+ I W+P H G+ GN + D LAK + L +S + I ++
Sbjct: 28 IAAEKLQEKGILPTIQWVPGHQGVIGNERADALAKEATK---LDPSSSRTSLAVIGTRIK 84
Query: 349 SEWHLHWKNNVINNKLRRIKEDTLLWKSSFDKDRRKEI-----------VICRLRIGHSH 397
W + + + + I + + + + RK+I +L++GH +
Sbjct: 85 QLGEREWLSYLGQYRRKAITLNPTTYAARYKWKTRKQIATPPTSREASSAFYQLKLGHCY 144
Query: 398 LTHNFLLKRE--DPPLCEWCNVQLSIQ--HILLECRKFRASRNKWH--LKDDIS 445
L +FL KR D +C CN + + HILL C ++ +R K KD +S
Sbjct: 145 L-RDFLFKRGKVDSKVCP-CNYRATQDPAHILLSCTLYKEARKKMQETTKDPLS 196
>gi|16118365|gb|AAL12731.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 596 YVDGASNRETKQGKAGYVTDKGRQKAVSLTETTNQKAELHAIQLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311730|gb|AEN04387.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L
Sbjct: 441 YVDGAANRETKKGKAGYVTDRGRQKIVPLTETTNQKAELQAILLALQDSXX--------- 491
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 492 --XVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 544
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 545 NEQVDKLVSNG 555
>gi|414152020|gb|AFW99177.1| polymerase polyprotein, partial [Equine infectious anemia virus]
Length = 1147
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AYIT + KL + ++E +AI M L ++ + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDSYY-CWKNITEG 692
Query: 272 LALKNIMSPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ 326
L L+ SP ++ NI K + F W+P H GI GN DE K S+
Sbjct: 693 LGLEGPDSPWWPIIQNIKTKE--------AIYFAWVPGHKGIYGNQLADEATKMSE 740
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 475 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 527
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 528 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
AYIT + KL + ++E +AI M L + + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDS-YYCWKNITEG 692
Query: 588 LALKNIMSP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L L+ SP ++ NI K + F W+P H GI GN
Sbjct: 693 LGLEGPDSPWWPIIQNIKTK--------EAIYFAWVPGHKGIYGN 729
>gi|302594708|gb|ADL59542.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 120
Score = 45.1 bits (105), Expect = 0.13, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL A+++ L S PE
Sbjct: 1 YVDGAANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAVYLALQD-----SGPE--- 52
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V + TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI GN
Sbjct: 53 ---VNVVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKE----KVYLSWVPAHKGIGGN 105
Query: 316 VQVDELAKN 324
QVD+L N
Sbjct: 106 EQVDKLVSN 114
>gi|283444786|gb|ADB20266.1| pol protein [Human immunodeficiency virus 1]
Length = 996
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + YIT+ Q +E + +EL AI + L ++ S+
Sbjct: 592 YVDGAANRETKMGKAGYITDRGRQKVVTISETTNQKTELQAIQLALQ---DSGSK----- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKEKVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|261330873|emb|CBH13858.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei
gambiense DAL972]
Length = 523
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 17/167 (10%)
Query: 256 IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
IF DS+ + T ++ LA+ + + + V+ +++I + ++ H G+ N
Sbjct: 279 IFSDSLSMLTALQTGPLAVTDPILRRLWRLLLQVQRRKVRI-----RLQFVFGHCGVKRN 333
Query: 316 VQVDELAKNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLR-RIKEDTLLW 374
DE+AK + + P L D+ + K+ L SE V N R + +
Sbjct: 334 EVCDEMAKKAADLPQLRDTWIPDIIAYAKRVLRSE-------EVHENTHRFGVTGNHFPT 386
Query: 375 KSSFDKDRRKEIVICRLRIGHSHLTHNFLLKRED---PPLCEWCNVQ 418
K + R +E V+ R R+G S + ++ ++ + PP C WCN Q
Sbjct: 387 KHKEELTREEETVLARFRLGSSR-HYGWMFRKINSSVPPQCRWCNPQ 432
>gi|414152006|gb|AFW99165.1| polymerase polyprotein, partial [Equine infectious anemia virus]
Length = 1147
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AYIT + KL + ++E +AI M L ++ + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDSYY-CWKNITEG 692
Query: 272 LALKNIMSPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ 326
L L+ SP ++ NI K + F W+P H GI GN DE K S+
Sbjct: 693 LGLEGPDSPWWPIIQNIKTKE--------AIYFAWVPGHKGIYGNQLADEATKMSE 740
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 475 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 527
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 528 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
AYIT + KL + ++E +AI M L + + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDS-YYCWKNITEG 692
Query: 588 LALKNIMSP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L L+ SP ++ NI K + F W+P H GI GN
Sbjct: 693 LGLEGPDSPWWPIIQNIKTK--------EAIYFAWVPGHKGIYGN 729
>gi|407736617|gb|AFU29857.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQQTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|384500884|gb|EIE91375.1| hypothetical protein RO3G_16086 [Rhizopus delemar RA 99-880]
Length = 756
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 2 KSLKAINILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTVYHT 61
K+L +N+LK + G SR R + VRP ++YG I T + L + V T
Sbjct: 601 KALATMNVLKSMGINPSGFSRLLSTRFYAHIVRPQLEYGLAI-NRFTNTQLKSIEDVQDT 659
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLETRRKILLANYGTRVKCNPSN 108
+R I GA + + + P + R IL A + R C P +
Sbjct: 660 CIRTIYGARGNTSTKVMLHLAKLPLMADRVHILQAQFLYRSLCLPDD 706
>gi|114430653|dbj|BAF31469.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|1332356|gb|AAB00737.1| pol polyprotein [Human immunodeficiency virus 2]
Length = 963
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS + + Y+T+ K+ + + +EL M L+ S P+ I
Sbjct: 464 YTDGSCNRQSKEGKAGYVTDRGKDKVKVLEQTTNQQAELEVFRMALAD-----SGPKVNI 518
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++A + S N +VN I+ E I V W+P+H GI GN
Sbjct: 519 IVDSQYVM-----GIVAGQPTESENRIVNQII----EEMIKKEAVYVAWVPAHKGIGGNQ 569
Query: 317 QVDEL 321
+VD L
Sbjct: 570 EVDHL 574
>gi|407737527|gb|AFU30618.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEVVSQIIEXLIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735498|gb|AFU28912.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735458|gb|AFU28880.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|87245348|gb|ABD34842.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI + L +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKIVPMTDTTNQKTELQAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L +++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQS--QPDKSESELVGQIIEQLIKKEKVYLAWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
+D+L N
Sbjct: 703 IDKLVSNG 710
>gi|407735473|gb|AFU28892.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|373881399|gb|AEY78036.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L
Sbjct: 540 YVDGAANRETKIGRAGYVTDRGRQKIVTLTETTNQKTELHAIYLALQDSGT--------- 590
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 591 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IRKERVYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 645 EQVDKLVSNG 654
>gi|326416854|gb|ADZ73280.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|325637435|gb|ADZ34996.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|114430973|dbj|BAF31757.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|429249516|gb|AFZ77802.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI++ L +
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|414152027|gb|AFW99183.1| polymerase polyprotein, partial [Equine infectious anemia virus]
Length = 1147
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 72/176 (40%), Gaps = 28/176 (15%)
Query: 159 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 211
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 212 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSSL 271
AYIT + KL + ++E +AI M L ++ + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDSYY-CWKNITEG 692
Query: 272 LALKNIMSPN-HLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ 326
L L+ SP ++ NI K + F W+P H GI GN DE K S+
Sbjct: 693 LGLEGPDSPWWPIIQNIKTKE--------AIYFAWVPGHKGIYGNQLADEATKMSE 740
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 66/165 (40%), Gaps = 28/165 (16%)
Query: 475 WELS-------VPEIIYLTSEKKENLSSVAVKNAFFQFKGENQNSLFCYTDGSKTAANSG 527
WE+ +PEIIY S V + + + + + YTDG K
Sbjct: 585 WEMQKGWYYAWLPEIIYS--------SQVVFDDWKLKLVEQPTSGITIYTDGGKQNGEGI 636
Query: 528 CAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587
AYIT + KL + ++E +AI M L + + I DS + C + +
Sbjct: 637 AAYITSKGKKKQKLLGPVTHQTAERIAIQMALE---DSEEKQINIVTDS-YYCWKNITEG 692
Query: 588 LALKNIMSP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
L L+ SP ++ NI K + F W+P H GI GN
Sbjct: 693 LGLEGPDSPWWPIIQNIKTK--------EAIYFAWVPGHKGIYGN 729
>gi|407735483|gb|AFU28900.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735468|gb|AFU28888.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|378812655|gb|AFC60580.1| pol protein, partial [Human immunodeficiency virus]
Length = 1003
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLAETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKN----KVYLSWVPAHKGI 697
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 698 GGNEQVDKLVSNG 710
>gi|327458223|gb|AEA76551.1| pol protein [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q + + +EL AI++ L S PE
Sbjct: 441 YVDGAANRENXLGKAGYVTDRGRQKVISITDTTNQKTELQAIYLALQD-----SGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V + TDS+ +L ++ P+ + ++ I E I V W+P+H GI GN Q
Sbjct: 493 ---VNVVTDSQYALGIIQ--AQPDKSESELVSLIIEELIKKXKVYLAWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|326416812|gb|ADZ73259.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 540 YVDGAANRDTKAGKAGYVTDRGRQKVVSLTETTNQKTELHAIQLALQD-----SGPE--- 591
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVNNI+ ++ I + W+P+H GI GN
Sbjct: 592 ---VNIVTDSQYALGIIQAQPDKSESELVNNIIEQL----IKKERIYLSWVPAHKGIGGN 644
Query: 316 VQVDELAKNS 325
QVD+L +
Sbjct: 645 EQVDKLVSSG 654
>gi|255984050|gb|ACU46097.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 540 YVDG---AANRETKLGKAGYVTDKGXQKVITLTETTNQKTELHAIHLALQDSGS------ 590
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + K S + LVN I+ K+ I V W+P+H GI
Sbjct: 591 -----EVNIVTDSQYALGIIQAKPDXSESELVNQIIEKL----IXKDKVYLSWVPAHKGI 641
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 642 GGNEQVDKL 650
>gi|429249528|gb|AFZ77808.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 988
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q NE + +EL AI++ L +
Sbjct: 581 YVDGAASRETKLGKAGYVTNRGRQKVVSLNETTNQKTELHAIYLALQDSGS--------- 631
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 632 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 687
Query: 318 VDEL 321
VD+L
Sbjct: 688 VDKL 691
>gi|407735503|gb|AFU28916.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735478|gb|AFU28896.1| pol protein, partial [Human immunodeficiency virus 1]
gi|407735488|gb|AFU28904.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311778|gb|AEN04411.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + SEL AI + L +
Sbjct: 441 YVDGASNRETKVGKAGYVTDRGRQKVVTLTETTNQKSELQAIQLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ ++++ +I E I + W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIIQ--AQPDKSESDLVNQIIEQLIXKERIYLSWVPAHKGIGGNEQ 547
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 548 VDKLVSNG 555
>gi|238734331|gb|ACR55548.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDKGRQKVVTLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYALGVIQAQPDRSESELVNQIIEKL----IGKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|194399889|gb|ACF60865.1| pol protein [Human immunodeficiency virus 1]
Length = 1001
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q + + + +EL AI++ L +
Sbjct: 594 YVDGAANKETKLGKAGYVTDRGRQKVVPFTDTTNQKTELQAIYLALQDSGS--------- 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 645 --EVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKGIGGNEQ 700
Query: 318 VDEL 321
+D+L
Sbjct: 701 IDKL 704
>gi|114430703|dbj|BAF31514.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430913|dbj|BAF31703.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430843|dbj|BAF31640.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430873|dbj|BAF31667.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|114430863|dbj|BAF31658.1| Pol [Human immunodeficiency virus 1]
Length = 1007
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI++ L S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSDSEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|409764|gb|AAA21792.1| pol-like protein [Neurospora crassa]
Length = 1154
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTV-----YHT- 61
N L L KTWG S A ++ +R + YGA + T+ V Y T
Sbjct: 783 NALTRLAAKTWGCSFARAREIYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTK 842
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLE 88
LR+++GAY+ +P+ +L E PPL+
Sbjct: 843 CLRVVAGAYKATPVRNLETETFCPPLD 869
>gi|344311701|gb|AEN04373.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 558
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q +E + +EL AI + L S PE
Sbjct: 441 YVDG---AANRETKIGKAGYVTDRGRQKIVTISETTNQKTELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 493 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGI 542
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 543 GGNEQVDKL 551
>gi|306477731|gb|ADM89240.1| pol protein [Human immunodeficiency virus 1]
gi|306477733|gb|ADM89241.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + +EL AI++ L
Sbjct: 441 YVDG---AANRETKLGKAGYVTDRGRQKVVSLADTTNQKTELQAIYLAL----------- 486
Query: 255 YIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L ++ P+ + I+ +I E I V W+P+H G
Sbjct: 487 ---QDSGLEVNIVTDSQYALGIIQ--AQPDQSESEIVSQIIEQLIKKEKVYLAWVPAHKG 541
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 542 IGGNEQVDKLVSNG 555
>gi|306416212|gb|ADM86953.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIIQ--AQPDRSESEVVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|395455408|gb|AFN62095.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 999
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI + L S PE
Sbjct: 592 YVDGAASRDTKIGKAGYVTDKGRQKVVTLTETTNQKTELQAIQIALQD-----SGPE--- 643
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I I EL I V W+P+H GI GN
Sbjct: 644 ---VNIVTDSQYALGIIQAQPDKSESELVNQI---IEEL-IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|212382579|gb|ACJ25610.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|411030107|gb|AFW03357.1| Pol, partial [Simian immunodeficiency virus]
Length = 1015
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 GPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|407735463|gb|AFU28884.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735453|gb|AFU28876.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|392498872|gb|AFM75717.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 GPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|38892620|gb|AAR27628.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q +E + +EL AI + L +
Sbjct: 592 YVDGAANRETKKGKAGYVTDRGRQKVVTISETTNQKTELQAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDELAKNS 325
QVD+L N
Sbjct: 697 EQVDKLVSNG 706
>gi|411030097|gb|AFW03348.1| Pol, partial [Simian immunodeficiency virus]
Length = 1015
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 GPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|407733151|gb|AFU26932.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1004
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q +E + +EL AI + L +
Sbjct: 597 YVDGAASRETRQGKAGYVTDRGRQKVVSLSETTNQKTELHAIHLALQDSGS--------- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 --EVNIVTDSQYALGIIQ--AQPDRSESEIVSQIIEELIKKEKVYLSWVPAHKGIGGNEQ 703
Query: 318 VDEL 321
VD+L
Sbjct: 704 VDKL 707
>gi|359373601|gb|AEV42637.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVISLTETTNQKTELHAIHLALQD-----------S 644
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
R V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 645 RSEVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|238734340|gb|ACR55556.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTNRGRQKVVTLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|187371935|gb|ACD02831.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGASNRETKKGKAGYVTDRGRQKAVSLTETTNQKAELHAIQLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L L+ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGILQ--AQPDKSESEIVNQIIEQLIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD L N
Sbjct: 703 VDRLVSNG 710
>gi|158931140|sp|P12502.2|POL_SIVS4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Nucleocapsid protein p7;
Short=NC; Contains: RecName: Full=p6-pol; Short=p6*;
Contains: RecName: Full=Protease; AltName: Full=PR;
AltName: Full=Retropepsin; Contains: RecName:
Full=Reverse transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1449
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 1031 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 1085
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 1086 GPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 1136
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 1137 GIGGNQEVDHL 1147
>gi|39930159|emb|CAE46399.1| pol protein [Simian immunodeficiency virus]
Length = 1004
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
YTDG+ + Y+ Q E + +EL+ + M L N
Sbjct: 596 YTDGAANRQTKQGRAGYVATNGKQKVVTLEETTNQKAELIGVLMALQDSPN--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L +A S + +V I+ + + + IT W+P+H GI GN
Sbjct: 647 --KVNIVTDSQYALGIIAGTPTTSEHQIVEQIIQAMQGKEEIYIT----WVPAHKGIGGN 700
Query: 316 VQVDEL 321
++D+L
Sbjct: 701 TEIDKL 706
>gi|409761|gb|AAA21781.1| pol-like protein [Neurospora crassa]
Length = 1154
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 8 NILKVLNNKTWGLSRACLLRLFYAFVRPIMDYGAVIYGSATQSSLSKLNTV-----YHT- 61
N L L KTWG S A ++ +R + YGA + T+ V Y T
Sbjct: 783 NALTRLAAKTWGCSFARAREIYTKCIRSAIAYGASAFHQPTEVYGKPRGIVIGLAKYQTK 842
Query: 62 ALRIISGAYRTSPIESLYAENGQPPLE 88
LR+++GAY+ +P+ +L E PPL+
Sbjct: 843 CLRVVAGAYKATPVRNLETETFCPPLD 869
>gi|38491648|gb|AAR22042.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDKGRQKVISLTETTNQRTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 647 -----EVNIVTDSQYALGIIQ--AQPDRSESELVSQIIEKLIEKDKVYLSWVPAHKGIGG 699
Query: 315 NVQVDELAKNS 325
N QVD+L N
Sbjct: 700 NEQVDKLVSNG 710
>gi|148745889|emb|CAK49333.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 60/136 (44%), Gaps = 31/136 (22%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLAL----------- 641
Query: 255 YIFRDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSH 309
+DS V I TDS+ +L + + S + LVN I+ K+ I V W+P+H
Sbjct: 642 ---QDSGLEVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAH 694
Query: 310 LGIAGNVQVDELAKNS 325
GI GN QVD+L N
Sbjct: 695 KGIGGNEQVDKLVSNG 710
>gi|116206210|ref|XP_001228914.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
gi|88182995|gb|EAQ90463.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
Length = 1620
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTW + A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 1197 KTWAMGLAKAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 1256
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 1257 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 1292
>gi|87116053|gb|ABD19589.1| pol protein [Human immunodeficiency virus 1]
Length = 1005
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q NE + +EL AI + L S PE
Sbjct: 598 YVDG---AANRDRKIGKAGYVTDRGRQKIISLNETTNQKTELQAIQLALQD-----SGPE 649
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 650 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----INKERVYLSWVPAHKGI 699
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 700 GGNEQVDKL 708
>gi|407915612|gb|EKG09173.1| hypothetical protein MPH_13829 [Macrophomina phaseolina MS6]
Length = 261
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 94/199 (47%), Gaps = 14/199 (7%)
Query: 263 ICTDSKSSLLALKNI--MSPNHLVNNILVKINELKI-LNITVKFLWIPSHLGIAGNVQVD 319
+ ++SK++L L+ + V NIL +++++ V+F W+P+ GI G+ +
Sbjct: 15 VYSNSKTALRLLRRPQQVPRQETVRNILRLLDQIRCNKGPPVEFRWVPAREGIVGSEKAH 74
Query: 320 ELA----KNSQNAPLLSMMTSEDLKSAIKKKLLSEWHLHWKNNVINNKLRRIKEDTLLW- 374
LA +N+Q PLL + + ++ L W ++ + + R++ +
Sbjct: 75 SLALQATENNQK-PLLGNLLRPLALARCREITLRLWRRTFEASKVGESTRKLDRALAHFH 133
Query: 375 -KSSFDKDRRKEIV-ICRLRIGHSHLTHN-FLLKREDPPLCEWCNVQLSIQHILLECRKF 431
K +D+ KE I +LR + L + +KR + P C + +++H LLEC ++
Sbjct: 134 TKKLYDQLNYKEAAAIAQLRTSKASLNEPLYKIKRAEAPSCNCGAERETVKHFLLECPRW 193
Query: 432 RASRNKWHLKDDISALLGD 450
R + L+ D+ + GD
Sbjct: 194 MDLRAR--LQIDLGSRFGD 210
>gi|325637351|gb|ADZ34923.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|325637237|gb|ADZ34826.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|38892755|gb|AAR27748.1| pol protein [Human immunodeficiency virus 1]
gi|212382582|gb|ACJ25611.1| pol protein [Human immunodeficiency virus 1]
Length = 999
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q NE + +EL AI + L +
Sbjct: 592 YVDGAANKETKIGKAGYVTDKGRQKVVTLNETTNQKAELQAIQLALQDSGS--------- 642
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 643 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGIGGN 696
Query: 316 VQVDEL 321
QVD+L
Sbjct: 697 EQVDKL 702
>gi|78172852|gb|ABB29383.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVPLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIVQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|409180149|gb|AFV26167.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ K + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSKEGKAGYVTDRGRDKVKPLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ + DS ++ ++A + S N LVN I+ E I + W+P+H
Sbjct: 652 GPKANVIVDSQYVM-----GIIAGQPTESENRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|344311627|gb|AEN04336.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 441 YVDGAANRETKTGKAGYVTDKGRQKIVTLNETTNQKAELQAIQLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 492 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 544
Query: 315 NVQVDEL 321
N Q+D+L
Sbjct: 545 NEQIDKL 551
>gi|344311625|gb|AEN04335.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L +
Sbjct: 441 YVDGAANRETKTGKAGYVTDKGRQKIVTLNETTNQKAELQAIQLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 492 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 544
Query: 315 NVQVDEL 321
N Q+D+L
Sbjct: 545 NEQIDKL 551
>gi|192335107|gb|ACF04089.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 27/134 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + +EL AI++ L
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAIYLAL----------- 641
Query: 255 YIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L ++ P+ + I+ +I E I V W+P+H G
Sbjct: 642 ---QDSGLEVNIVTDSQYALGIIQ--AQPDKSESEIVSQIIEQLIKKERVYLAWVPAHKG 696
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 697 IGGNEQVDKLVSNG 710
>gi|148745861|emb|CAK49319.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 965
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN YIT+ Q E + +EL AI H+ S PE
Sbjct: 597 YVDG---AANRETKLGKAGYITDKGRQKVISLTETTNQKTELHAI-----HLALQDSGPE 648
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S LVN I+ K+ E + V W+P+H GI
Sbjct: 649 ------VNIVTDSQYALGIIQAQPDRSEAELVNQIIEKLIEKE----KVYLSWVPAHKGI 698
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 699 GGNEQVDKL 707
>gi|112351449|gb|ABI15241.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRETKIGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ KI E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEIVNKIIEKLIEKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
VD+L N
Sbjct: 703 VDKLVSNG 710
>gi|87245358|gb|ABD34851.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI + L +
Sbjct: 596 YVDGAANRETKSGKAGYVTDRGRQKIVPMTDTTNQKTELQAIXLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L +++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQS--QPDKSESELVGQIIEQLIKKEKVYLAWVPAHKGIGGNEQ 702
Query: 318 VDELAKNS 325
+D+L N
Sbjct: 703 IDKLVSNG 710
>gi|409684316|gb|AFV34233.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASKETKLGKAGYVTNRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E + V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEIVNQIIEELVKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311732|gb|AEN04388.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L
Sbjct: 441 YVDGAANRETKKGKAGYVTDRGRQKIVPLTETTNQKAELQAILLAL-------------- 486
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H G
Sbjct: 487 QDSEVKVNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----MSWVPAHKG 541
Query: 312 IAGNVQVDELAKNS 325
I GN QVD+L N
Sbjct: 542 IGGNEQVDKLVSNG 555
>gi|392498852|gb|AFM75699.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 GPKANIIVDSQYVM-----GIIAGQPTESESRLVNQII----EEMIKREAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|393239005|gb|EJD46539.1| hypothetical protein AURDEDRAFT_39503, partial [Auricularia
delicata TFB-10046 SS5]
Length = 59
Score = 44.7 bits (104), Expect = 0.15, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 388 ICRLRIGHSHLT-HNFLLKREDPPLCEWCNVQ-LSIQHILLECRKFRASRNK 437
I +LRIGH+ L H +KR + P C+ C S++H LLECR++R R +
Sbjct: 1 ITQLRIGHAPLNKHLHRIKRHEHPTCDACGAAPESVRHYLLECRQYRPYRER 52
>gi|306416338|gb|ADM87016.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L +
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIVQ--AQPDRSESEVVSQIIEELIKKDKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|37935931|gb|AAO47173.1| pol protein [Human immunodeficiency virus 1]
Length = 1010
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+TE Q E + +EL+AI + L
Sbjct: 593 YVDGAANRDTKSGKAGYVTEQGKQRIIKLEETTNQKAELMAILLALQD-----------S 641
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
++ V I TDS+ +L ++ + S + +V I+ ++ + + + +T W+P+H GI GN
Sbjct: 642 KEQVNIVTDSQYALGIISSQPTQSDSPIVQQIIEELTKKEQVYLT----WVPAHKGIGGN 697
Query: 316 VQVDEL 321
++D+L
Sbjct: 698 EKIDKL 703
>gi|407735291|gb|AFU28744.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKQGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + + +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDKSESEAVNQIIEELIRKERVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|325637480|gb|ADZ35034.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|325637220|gb|ADZ34812.1| pol protein [Human immunodeficiency virus 1]
gi|325637242|gb|ADZ34830.1| pol protein [Human immunodeficiency virus 1]
gi|325637267|gb|ADZ34850.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|116207974|ref|XP_001229796.1| hypothetical protein CHGG_03280 [Chaetomium globosum CBS 148.51]
gi|88183877|gb|EAQ91345.1| hypothetical protein CHGG_03280 [Chaetomium globosum CBS 148.51]
Length = 683
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 16 KTWGLSRACLLRLFYAFVRPIMDYGAV-------IYGSATQSSLSK-LNTVYHTALRIIS 67
KTWG+ A ++ +R + YGA + G + ++K L + +LRI++
Sbjct: 415 KTWGMGLAEAREVYTKCIRSALAYGASSFHIPTDVGGEPVKKGITKALGKAQNKSLRIVA 474
Query: 68 GAYRTSPIESLYAENGQPPLETRRKILLANYGTRVK 103
GA++++PI +L E PPL+ LA++ R++
Sbjct: 475 GAFKSTPIRNLETETWVPPLDLYLNKRLADFENRLQ 510
>gi|407925622|gb|EKG18611.1| hypothetical protein MPH_04146, partial [Macrophomina phaseolina
MS6]
Length = 303
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 15/140 (10%)
Query: 305 WIPSHLGIAGNVQVDELAKNSQNAPLLSMMTSEDLKS-AIKKKLLSEWHLHWKNNVINNK 363
W+P H+ + GN + D LAK + P + S +K +L EW WK+ +
Sbjct: 10 WVPGHVNVHGNEEADLLAKKAATLPPDTDRPSLVYYGMQVKGRLYDEWENRWKSTPSS-- 67
Query: 364 LRRIKEDTLLWK-----SSFDKDRRKEIVICRLRIGHSHLT---HNFLLKREDPPLCEWC 415
T WK R +L+ GH + H F +D C
Sbjct: 68 ---AYSKTFGWKIKRKLKPPTSVRETASAFYQLKTGHGYFRSYLHRFNHAEDDGCPCSGT 124
Query: 416 NVQLSIQHILLECRKFRASR 435
Q + +H+LLEC +R R
Sbjct: 125 AKQ-TPKHLLLECPLYRTER 143
>gi|325637468|gb|ADZ35024.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 597 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 648
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 649 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 701
Query: 316 VQVDEL 321
QVD+L
Sbjct: 702 EQVDKL 707
>gi|325637225|gb|ADZ34816.1| pol protein [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 19/126 (15%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T Q + + +EL AI H+ S PE
Sbjct: 596 YVDGAANRETKSGKAGYVTNKGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L L + S + LVN I+ ++ I V W+P+H GI GN
Sbjct: 648 ---VNIVTDSQYALGILQAQPDKSESELVNQIIEQL----IQKEKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|238632968|gb|ACR51076.1| pol protein [Human immunodeficiency virus 1]
Length = 988
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 19/126 (15%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q + + + +EL AI + L +
Sbjct: 599 YVDGAASRETKLGKAGYVTDRGRQKVVSFTDTTNQKTELQAIHLALQDSGS--------- 649
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 650 --EVNIVTDSQYALGIIQAQPDKSESELVNQIIEKL----IYKEKVYLAWVPAHKGIGGN 703
Query: 316 VQVDEL 321
QVD+L
Sbjct: 704 EQVDKL 709
>gi|148745875|emb|CAK49326.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 964
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 596 YVDG---AANRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ SL + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 647 -----EVNIVTDSQYSLGIIQAQPDKSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|24181509|gb|AAN47128.1| pol protein [Human immunodeficiency virus 1]
Length = 1000
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI + L S PE
Sbjct: 593 YVDGAANRETKKGKAGYVTDKGRQKIVSLTETTNQKAELQAIQLALQD-----SGPE--- 644
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVK-INELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L + + S + LVN I+ + IN+ +I W+P+H GI G
Sbjct: 645 ---VNIVTDSQYALGIIQAQPDKSESELVNQIIEQLINKERIY-----LSWVPAHKGIGG 696
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 697 NEQVDKL 703
>gi|407736602|gb|AFU29845.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 596 YVDGAASRETKLGKAGYVTDRGRQKVISLTETTNQQTELHAI-----HLALQDSGPE--- 647
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 648 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|306416464|gb|ADM87079.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ + Y+T+ Q E + SEL AI++ L +
Sbjct: 441 YVDGAVSRESKLGKAGYVTDRGRQKVVSLIETTNQKSELHAIYLALQDSGS--------- 491
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 492 --EVNIVTDSQYALGIIQ--AQPDRSESEVVSQIIEELIKKDKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|407736205|gb|AFU29509.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1002
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q E + +EL AI++ L +
Sbjct: 595 YVDGAASRGTKVGKAGYVTDKGRQKVVSLTETTNQKTELHAIYLALQDSGS--------- 645
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + I+ +I E I V W+P+H GI GN Q
Sbjct: 646 --EVNIVTDSQYALGIIQ--AQPDRSDSEIVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 701
Query: 318 VDEL 321
VD+L
Sbjct: 702 VDKL 705
>gi|255984058|gb|ACU46101.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGSKTAANSG-----CAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN G Y+T+ Q + + +EL AI H+ S PE
Sbjct: 540 YVDG---AANRGTRLGKAGYVTDRGRQKVVSLTDTTNQKTELQAI-----HLALQDSGPE 591
Query: 255 YIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
V I TDS+ +L ++ P+ + ++ +I E I W+P+H GI G
Sbjct: 592 ------VNIVTDSQYALGIIQ--AQPDKSESELVXQIIEXLINKEKXYLXWVPAHKGIGG 643
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 644 NEQVDKL 650
>gi|119507298|dbj|BAF42533.1| Pol [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDG---AANRETKLGRAGYVTDRGRQRVVSLTETTNQKTELHAILLALQDSGS------ 646
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
+V I TDS+ +L + + S + LVNNI+ K+ I V W+P+H GI
Sbjct: 647 -----AVNIVTDSQYALGIIHAQPDRSESELVNNIIEKL----IGKDKVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
>gi|116205549|ref|XP_001228585.1| hypothetical protein CHGG_10658 [Chaetomium globosum CBS 148.51]
gi|88176786|gb|EAQ84254.1| hypothetical protein CHGG_10658 [Chaetomium globosum CBS 148.51]
Length = 809
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 124/315 (39%), Gaps = 53/315 (16%)
Query: 20 LSRACLLRLFYAFVRPIMDYGAVIYGSA-TQSSLSKLNTVYHTALRIISGAYRTSPIESL 78
LS +LF A V P+MDY A ++ A + +LS LN I+GA+RT+ +
Sbjct: 445 LSPRTARQLFVATVAPVMDYAANVWMHACGEKALSWLNRAQKIGALAITGAFRTAATAVV 504
Query: 79 YAENGQPPLETRRKILLANYGTRVKCNPSNPVSLILTHAQLGRNINRANLPRTVKSRLED 138
AE P+ R A+ + P TH + + RT +
Sbjct: 505 EAEASIYPVRERHAQAAASLWINIHTLPG-------THPLAMKKV------RTTVRFVSP 551
Query: 139 LQIFDRISAQV-IKRDEYI-----APWELSVPEIIYLTSEKKENL----------SSVAV 182
LQ R++ V + R E I PW + + K + +S +V
Sbjct: 552 LQKIARVAEGVRVDRMETIQEYAVPPWVPRLRPTLEADRGKAAEMVNKISGIVIATSSSV 611
Query: 183 KNAFFQFKGENQNSLFCYTDGSKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFML 242
K G +++LF T S+T N V E + +++EL AI M
Sbjct: 612 KKGIVGMGGLARDTLFNRT--SETVTNYAV---------VLGTREEQNPYTAELAAIAMA 660
Query: 243 LSHICNTRSRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNI--- 299
L + P I + + T ++S+L A+ + +I+ +I +L L+
Sbjct: 661 LEKL------PASICHRHITVITRNQSALAAVGQPRQQSG--QSIIRQIYDLARLHRQRG 712
Query: 300 -TVKFLWIPSHLGIA 313
+V FLWIP+ + A
Sbjct: 713 NSVNFLWIPAEIDFA 727
>gi|86753653|gb|ABD15071.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + Y+T+ Q NE + +EL AI + L
Sbjct: 593 YVDGAANRETKTGKAGYVTDKGRQKIATLNETTNQKAELQAIQLAL-------------- 638
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + I+ +I E I + W+P+H GI G
Sbjct: 639 QDSGLEVNIVTDSQYALGIIQ--AQPDKSESEIVNQIIEQLINKERIYLSWVPAHKGIGG 696
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 697 NEQVDKL 703
>gi|409181541|gb|AFV26769.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1007
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 200 YTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ N Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAANRENKRGKAGYVTDRGRQKVITLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 315
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI GN
Sbjct: 647 --EVNIVTDSQYALGIIQAQPDRSDSELVNQIIEKL----IEKDKVYLSWVPAHKGIGGN 700
Query: 316 VQVDEL 321
QVD+L
Sbjct: 701 EQVDKL 706
>gi|339507358|gb|AEJ81091.1| pol protein [Human immunodeficiency virus 1]
Length = 656
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 27/134 (20%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN YIT+ Q N+ + +EL AI++ L
Sbjct: 537 YVDG---AANRETKLGKAGYITDKGRQKVVSLNDTTNQKTELQAIYLAL----------- 582
Query: 255 YIFRDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLG 311
+DS V I TDS+ +L ++ P+ + ++ +I E I V W+P+H G
Sbjct: 583 ---QDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLAWVPAHKG 637
Query: 312 IAGNVQVDELAKNS 325
I GN +VD+L N
Sbjct: 638 IGGNERVDKLVSNG 651
>gi|328834479|gb|AEB52884.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1011
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 604 YVDG---AANRETKLGKAGYVTDKGRQKVVSLTETTNQKTELHAIHLALQDSGS------ 654
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ I V W+P+H GI
Sbjct: 655 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKL----IEKDKVYLSWVPAHKGI 705
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 706 GGNEQVDKLVSNG 718
>gi|198460193|ref|XP_002136001.1| GA23337 [Drosophila pseudoobscura pseudoobscura]
gi|198140140|gb|EDY70930.1| GA23337 [Drosophila pseudoobscura pseudoobscura]
Length = 936
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 18 WGLSRACLLRLFYAFVRPIMDYGAVIYGSA--TQSSLSKLNTVYHTALRIISGAYRTSPI 75
WG++ + L+ +RPIM YG V++ A ++ L+KL+ V A I+G RT+P
Sbjct: 744 WGMTPYIVRWLYTVIIRPIMLYGVVVWWPALDRRTCLNKLSRVQRMAEPCITGGLRTTPG 803
Query: 76 ESL 78
E+L
Sbjct: 804 EAL 806
>gi|2065473|gb|AAB54043.1| pol polyprotein [Simian immunodeficiency virus]
Length = 1060
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEY-I 256
YTDGS K + YIT+ K+ + + +EL A M L T S P+ I
Sbjct: 648 YTDGSCNKQSKEGKAGYITDRGKDKVKVLEQTTNQQAELEAFLMAL-----TDSGPKANI 702
Query: 257 FRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNV 316
DS ++ ++ S + LVN I+ ++ I + W+P+H GI GN
Sbjct: 703 IVDSQYVM-----GIITGCPTESESRLVNQIIKEM----IKKSEIYVAWVPAHKGIGGNQ 753
Query: 317 QVDEL 321
+VD L
Sbjct: 754 EVDHL 758
>gi|344311703|gb|AEN04374.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q +E + +EL AI + L S PE
Sbjct: 441 YVDG---AANRETKIGKAGYVTDRGRQKIVTISETTNQKTELQAIQLALQD-----SGPE 492
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 493 ------VNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IQKERVYLSWVPAHKGI 542
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 543 GGNEQVDKL 551
>gi|374349903|gb|AEZ35624.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 945
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI++ L S PE
Sbjct: 538 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAIYLALQD-----SGPE--- 589
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN +
Sbjct: 590 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIRKEKVYLSWVPAHKGIGGNEK 644
Query: 318 VDEL 321
VD+L
Sbjct: 645 VDKL 648
>gi|341571532|gb|AEK79375.1| pol protein [Human immunodeficiency virus 1]
Length = 1004
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ + + Y+T+ Q + + +EL AI++ L
Sbjct: 597 YVDGAANRETKSGKAGYVTDRGRQKVVSMTDTTNQKTELQAIYLAL-------------- 642
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L +++ P+ + I+ +I E I V W+P+H GI G
Sbjct: 643 QDSGLEVNIVTDSQYALGIIQS--QPDRSESEIVNQIIEQLIKKEKVYLAWVPAHKGIGG 700
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 701 NEQVDKL 707
>gi|306416270|gb|ADM86982.1| reverse transcriptase [Human immunodeficiency virus 1]
Length = 560
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG S+ Y+T+ Q E + +EL AI H+ S PE
Sbjct: 441 YVDGAASRETKLGKAGYVTDRGRQKVVSLTETTNQKTELHAI-----HLALQDSGPE--- 492
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 493 ---VNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEDLIKKEKVYLSWVPAHKGIGGNEQ 547
Query: 318 VDEL 321
VD+L
Sbjct: 548 VDKL 551
>gi|409180159|gb|AFV26176.1| pol protein, partial [Simian immunodeficiency virus]
Length = 1015
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 194 QNSLFCYTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRS 251
Q + Y DGS + + Y+T+ KL + + +EL A ++ L+ S
Sbjct: 597 QGAETFYVDGSCNRQSREGKAGYVTDRGRDKAKLLEQTTNQQAELEAFYLALAD-----S 651
Query: 252 RPEY-IFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
P+ I DS ++ ++A + S + LVN I+ E I + W+P+H
Sbjct: 652 GPKANIIVDSQYVM-----GIVAGQPTESESRLVNQII----EEMIKKEAIYVAWVPAHK 702
Query: 311 GIAGNVQVDEL 321
GI GN +VD L
Sbjct: 703 GIGGNQEVDHL 713
>gi|326416738|gb|ADZ73222.1| pol protein [Human immunodeficiency virus 1]
Length = 659
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI++ L +
Sbjct: 540 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTETTNQKTELHAIYLALQDSGS------ 590
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ K+ E + + ++ W+P+H GI
Sbjct: 591 -----EVNIVTDSQYALGIIQAQPDRSESELVNQIIEKLIEKERIYLS----WVPAHKGI 641
Query: 313 AGNVQVDELAKNS 325
GN QVD+L +
Sbjct: 642 GGNEQVDKLVSSG 654
>gi|306477627|gb|ADM89188.1| pol protein [Human immunodeficiency virus 1]
Length = 848
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q + + +EL AI H+ S PE
Sbjct: 441 YVDG---AANRETKLGKAGYVTDRGRQKVVPLTDTTNQKTELQAI-----HLALQDSGPE 492
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVNNI+ ++ I V W+P+H GI
Sbjct: 493 ------VNIVTDSQYALGIIQAQPDQSESELVNNIIEQL----IKKEKVYLAWVPAHKGI 542
Query: 313 AGNVQVDEL 321
GN +VD+L
Sbjct: 543 GGNEKVDKL 551
>gi|170040414|ref|XP_001847995.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863953|gb|EDS27336.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 362
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 17/201 (8%)
Query: 136 LEDLQIFDRISAQVIKRDEYIAPWELSV-PEIIYLTSEKKENLSSVAVKN-AFFQFKGEN 193
LE+ IF+ I+ + D + E+ V P + LT+ K N +K+ A + E
Sbjct: 114 LENRYIFEAIAKHIRVPDLLL---EVQVCPTMDLLTTTYKTNTDGQVLKHLAEYLLSTEY 170
Query: 194 QNSLFCYTDGSKTA-ANSGCAYITETESQ--VFKLYNENSVFSSELLAIFMLLSHICNTR 250
N +TD SK++ G E + +L S+ ++E LAI + + HI
Sbjct: 171 YNRPRIFTDASKSSDGRCGIGVFDEQSGTRIMMQLKLGTSISTAETLAIQVAMQHIDKRG 230
Query: 251 SRPEYIFRDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHL 310
+ + DS +C K S +N N + N+IL K K T++ WIP H+
Sbjct: 231 IQNAVLLTDSQPVCLFLKKS----RNSRMRNSVANDILEKA---KRNRTTIQ--WIPGHV 281
Query: 311 GIAGNVQVDELAKNSQNAPLL 331
+ GN D LA+ + +A +
Sbjct: 282 QVDGNETADGLARQALSAEFV 302
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 13/156 (8%)
Query: 480 PEIIYLTSEKKENLSSVAVKN-AFFQFKGENQNSLFCYTDGSKTA-ANSGCAYITETESQ 537
P + LT+ K N +K+ A + E N +TD SK++ G E
Sbjct: 140 PTMDLLTTTYKTNTDGQVLKHLAEYLLSTEYYNRPRIFTDASKSSDGRCGIGVFDEQSGT 199
Query: 538 --VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNIMS 595
+ +L S+ ++E LAI + + HI + + DS +C K S +N
Sbjct: 200 RIMMQLKLGTSISTAETLAIQVAMQHIDKRGIQNAVLLTDSQPVCLFLKKS----RNSRM 255
Query: 596 PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGN 631
N + N+IL K K T++ WIP H+ + GN
Sbjct: 256 RNSVANDILEKA---KRNRTTIQ--WIPGHVQVDGN 286
>gi|38491734|gb|AAR22118.1| pol protein [Human immunodeficiency virus 1]
Length = 1002
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 21/127 (16%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q NE + +EL AI + L
Sbjct: 595 YVDGAANKETKVGRAGYVTDKGRQKVVTLNETTNQKTELEAIHLAL-------------- 640
Query: 258 RDS---VFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAG 314
+DS V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI G
Sbjct: 641 QDSGLEVNIVTDSQYALGIIQ--AQPDKSESELVSQIIEQLIKKEKVYLSWVPAHKGIGG 698
Query: 315 NVQVDEL 321
N QVD+L
Sbjct: 699 NEQVDKL 705
>gi|2570326|gb|AAC32654.1| pol polyprotein [Human immunodeficiency virus 1]
Length = 912
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 25/129 (19%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN ++T+ Q E + +EL AI + L SRPE
Sbjct: 505 YVDG---AANRETKLGKAGHVTDKGKQKIITLTETTNQKAELHAIQLALQD-----SRPE 556
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 557 ------VNIVTDSQYALGIIQAQPDRSGSELVNQIIEQL----IKKEKVYLSWVPAHKGI 606
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 607 GGNEQVDKL 615
>gi|407735204|gb|AFU28672.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAASKETKEGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|407735164|gb|AFU28640.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 200 YTDG--SKTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG SK Y+T+ Q E + +EL AI + L +
Sbjct: 596 YVDGAASKETKEGKAGYVTDRGRQKVVSLTETTNQKTELHAIHLALQDSGS--------- 646
Query: 258 RDSVFICTDSKSSLLALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQ 317
V I TDS+ +L ++ P+ + ++ +I E I V W+P+H GI GN Q
Sbjct: 647 --EVNIVTDSQYALGIIQ--AQPDRSESEVVNQIIEELIKKEKVYLSWVPAHKGIGGNEQ 702
Query: 318 VDEL 321
VD+L
Sbjct: 703 VDKL 706
>gi|344311709|gb|AEN04377.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 562
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 25/133 (18%)
Query: 200 YTDGSKTAAN-----SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPE 254
Y DG AAN Y+T+ Q E + +EL AI + L +
Sbjct: 441 YVDG---AANRETKIGKAGYVTDRGRQKVIXLTETTNQKTELQAIKLALQDSGS------ 491
Query: 255 YIFRDSVFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
V I TDS+ +L + + S + LVN I+ ++ I V W+P+H GI
Sbjct: 492 -----EVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IXKXRVYLSWVPAHKGI 542
Query: 313 AGNVQVDELAKNS 325
GN QVD+L N
Sbjct: 543 GGNEQVDKLVSNG 555
>gi|358022871|gb|AEU03897.1| pol protein, partial [Human immunodeficiency virus 1]
Length = 1003
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 25/129 (19%)
Query: 200 YTDGS--KTAANSGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIF 257
Y DG+ K Y+T+ Q NE + +EL AI++ L
Sbjct: 596 YVDGAANKDTKLGKAGYVTDRGRQKVVSLNETTNQKTELHAIYLAL-------------- 641
Query: 258 RDS---VFICTDSKSSL--LALKNIMSPNHLVNNILVKINELKILNITVKFLWIPSHLGI 312
+DS V I TDS+ +L + + S + LVN I+ K+ E + V W+P+H GI
Sbjct: 642 QDSGLEVNIVTDSQYALGIIQAQPDRSDSELVNLIIEKMIEKE----KVYLSWVPAHKGI 697
Query: 313 AGNVQVDEL 321
GN QVD+L
Sbjct: 698 GGNEQVDKL 706
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,239,729,579
Number of Sequences: 23463169
Number of extensions: 363942150
Number of successful extensions: 934148
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 3425
Number of HSP's that attempted gapping in prelim test: 929420
Number of HSP's gapped (non-prelim): 7307
length of query: 650
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 501
effective length of database: 8,863,183,186
effective search space: 4440454776186
effective search space used: 4440454776186
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)