Query psy216
Match_columns 650
No_of_seqs 425 out of 2135
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 17:50:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qio_A GAG-POL polyprotein; RN 99.9 7.1E-23 2.4E-27 189.6 10.6 122 510-643 10-146 (150)
2 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.2E-22 7.6E-27 187.8 12.0 128 510-645 5-152 (154)
3 3h08_A RNH (ribonuclease H); R 99.9 1.8E-22 6.1E-27 186.8 8.6 119 511-643 3-143 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.9 4.9E-22 1.7E-26 185.5 8.5 127 511-647 3-146 (155)
5 2e4l_A Ribonuclease HI, RNAse 99.8 1.3E-21 4.4E-26 183.2 8.7 124 511-644 5-145 (158)
6 3p1g_A Xenotropic murine leuke 99.8 1.6E-21 5.6E-26 182.9 9.2 122 512-647 23-159 (165)
7 2kq2_A Ribonuclease H-related 99.8 2.4E-22 8.1E-27 185.8 3.3 128 510-648 4-141 (147)
8 1ril_A Ribonuclease H; hydrola 99.8 3E-21 1E-25 182.0 4.9 126 511-646 7-150 (166)
9 2qkb_A Ribonuclease H1, HS-RNA 99.8 4.3E-20 1.5E-24 172.3 11.7 128 194-329 5-152 (154)
10 2lsn_A Reverse transcriptase; 99.8 3.2E-21 1.1E-25 180.6 3.1 125 511-643 6-162 (165)
11 3h08_A RNH (ribonuclease H); R 99.8 1.7E-19 5.8E-24 166.7 10.0 118 195-327 3-143 (146)
12 2kq2_A Ribonuclease H-related 99.8 3.9E-20 1.3E-24 170.9 4.8 127 193-330 3-139 (147)
13 3qio_A GAG-POL polyprotein; RN 99.8 7E-19 2.4E-23 162.7 11.8 124 193-328 9-147 (150)
14 3hst_B Protein RV2228C/MT2287; 99.8 7.5E-19 2.6E-23 161.3 11.1 121 512-643 3-132 (141)
15 1jl1_A Ribonuclease HI; RNAse 99.8 4.5E-19 1.6E-23 165.4 9.6 125 196-331 4-146 (155)
16 3p1g_A Xenotropic murine leuke 99.8 6.5E-19 2.2E-23 165.2 10.4 123 196-329 23-157 (165)
17 3u3g_D Ribonuclease H, RNAse H 99.8 7.9E-19 2.7E-23 160.8 9.5 126 511-643 2-136 (140)
18 2e4l_A Ribonuclease HI, RNAse 99.8 9E-19 3.1E-23 163.9 9.6 125 195-330 5-148 (158)
19 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 3.9E-18 1.3E-22 191.5 12.5 118 510-642 434-555 (555)
20 2zd1_A Reverse transcriptase/r 99.7 4.9E-18 1.7E-22 190.8 11.8 116 510-641 437-557 (557)
21 1ril_A Ribonuclease H; hydrola 99.7 2.2E-18 7.4E-23 162.5 6.4 125 195-330 7-150 (166)
22 2ehg_A Ribonuclease HI; RNAse 99.7 6.7E-18 2.3E-22 156.6 9.2 121 513-645 2-135 (149)
23 2lsn_A Reverse transcriptase; 99.7 6.2E-17 2.1E-21 151.5 9.1 126 194-327 5-162 (165)
24 3u3g_D Ribonuclease H, RNAse H 99.6 1.1E-15 3.9E-20 139.6 10.6 120 196-327 3-136 (140)
25 3hst_B Protein RV2228C/MT2287; 99.6 2.1E-15 7.3E-20 138.1 12.3 121 196-328 3-133 (141)
26 2zd1_A Reverse transcriptase/r 99.6 7.1E-15 2.4E-19 165.1 13.4 116 194-325 437-557 (557)
27 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 5E-15 1.7E-19 166.3 12.0 117 194-326 434-555 (555)
28 2ehg_A Ribonuclease HI; RNAse 99.6 1E-14 3.4E-19 135.0 10.7 120 197-328 2-134 (149)
29 1zbf_A Ribonuclease H-related 99.3 8.9E-13 3E-17 119.9 4.3 116 511-636 10-139 (142)
30 4htu_A Ribonuclease H, RNAse H 99.2 2.7E-11 9.3E-16 107.9 6.8 95 512-614 5-113 (134)
31 1zbf_A Ribonuclease H-related 98.7 7.9E-09 2.7E-13 93.8 5.9 115 195-320 10-139 (142)
32 4htu_A Ribonuclease H, RNAse H 98.5 3.4E-07 1.2E-11 81.4 8.7 96 194-298 3-113 (134)
33 1rw3_A POL polyprotein; RNA an 75.1 0.73 2.5E-05 49.6 0.7 43 544-593 386-428 (455)
34 1rw3_A POL polyprotein; RNA an 65.7 1.7 6E-05 46.6 1.1 74 194-277 344-428 (455)
35 2zd1_B P51 RT; P51/P66, hetero 42.7 45 0.0015 35.2 7.4 72 193-269 321-398 (428)
36 2zd1_B P51 RT; P51/P66, hetero 34.2 33 0.0011 36.1 4.7 73 510-589 322-402 (428)
37 2fr5_A Cytidine deaminase; tet 23.4 1.1E+02 0.0037 27.0 5.3 54 523-584 35-92 (146)
38 3alr_A Nanos protein; zinc-fin 21.4 47 0.0016 27.3 2.2 28 410-437 72-99 (106)
No 1
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.88 E-value=7.1e-23 Score=189.58 Aligned_cols=122 Identities=26% Similarity=0.357 Sum_probs=92.1
Q ss_pred CCcEEEEECCCCCCCc--eeEEEEEcccee-eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHH
Q psy216 510 QNSLFCYTDGSKTAAN--SGCAYITETESQ-VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~--~G~g~v~~~~~~-~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~a 586 (650)
.+.+.||||||+.+++ .|+|+++..... .+.. ..+||++||++|++.||+.+ . .+|.|+|||+++
T Consensus 10 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~-------~~v~i~tDS~~v 77 (150)
T 3qio_A 10 VGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----G-------LEVNIVTDSQYA 77 (150)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----C-------SEEEEEESCHHH
T ss_pred CCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----C-------CcEEEEeCcHHH
Confidence 3468999999987663 788988864322 2333 46899999999999999984 1 569999999999
Q ss_pred HHHhhCCC-----------CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216 587 LLALKNIM-----------SPNHLV-NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSS 643 (650)
Q Consensus 587 l~~i~~~~-----------~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~ 643 (650)
++.|+++. .+.++. .++++.+.++..++..|.|.|||||+|++|||.||+||+.|+.
T Consensus 78 ~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~ 146 (150)
T 3qio_A 78 LGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIR 146 (150)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHH
Confidence 99998751 222221 3444444444456889999999999999999999999999875
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=2.2e-22 Score=187.84 Aligned_cols=128 Identities=15% Similarity=0.242 Sum_probs=96.7
Q ss_pred CCcEEEEECCCCCCCc-----eeEEEEEccce---eeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEe
Q psy216 510 QNSLFCYTDGSKTAAN-----SGCAYITETES---QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICT 581 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~-----~G~g~v~~~~~---~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~s 581 (650)
.+.+.||||||+.+++ +|+|+|+.... ....+...+||+.||++|++.||+.+.+... .+|.|+|
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~-------~~v~i~t 77 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNI-------NKLVLYT 77 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTC-------CEEEEEE
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCC-------ceEEEEE
Confidence 3568999999997653 78999886422 2234444689999999999999999987433 6799999
Q ss_pred ccHHHHHHhhCCC-----------CchhH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcccc
Q psy216 582 DSKSSLLALKNIM-----------SPNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYK 645 (650)
Q Consensus 582 DS~~al~~i~~~~-----------~~~~~-~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~~ 645 (650)
||+++++.|.++. .+.+. ...+++.+..+.. +..|.|.|||||+|++|||.||+||+.|+..+
T Consensus 78 DS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 78 NSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp SCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 9999999998731 11111 1334444444544 45799999999999999999999999998753
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.87 E-value=1.8e-22 Score=186.80 Aligned_cols=119 Identities=19% Similarity=0.170 Sum_probs=90.9
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEccce---eeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHH
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITETES---QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~---~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~ 585 (650)
+.+.||||||+.++ ..|+|+++.... ...+....+||+.||++|++.||+.+.+ . .+|.|+|||++
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~-------~~v~I~tDS~~ 73 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDPATTNNRMELMAAIKGLEALKE--P-------ARVQLYSDSAY 73 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--C-------CEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--c-------CcEEEEeChHH
Confidence 46899999998776 378898886432 1223234679999999999999999864 1 67999999999
Q ss_pred HHHHhhC-C----------------CCchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216 586 SLLALKN-I----------------MSPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSS 643 (650)
Q Consensus 586 al~~i~~-~----------------~~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~ 643 (650)
+++.|++ + ...+++++.+... ... ..|.|.|||||+|++|||.||+||+.|..
T Consensus 74 vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~----~~~-~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 74 LVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKL----TTL-HRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHH----HHH-SEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHH----Hhh-CceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 9999987 2 1224455555443 332 46999999999999999999999999874
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.86 E-value=4.9e-22 Score=185.53 Aligned_cols=127 Identities=15% Similarity=0.208 Sum_probs=95.2
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEcccee---eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHH
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITETESQ---VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~---~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~ 585 (650)
..+.||||||+.++ .+|+|+|+..... ..+....+||+.||+.|++.||+.+.+. .+|.|+|||++
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~~---------~~v~I~tDS~~ 73 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEH---------AEVILSTDSQY 73 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCCSC---------CEEEEEECCHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCCCCcHHHHHHHHHHHHHHHhCcC---------CcEEEEeCHHH
Confidence 35899999999865 3789998863221 1222245799999999999999998641 56999999999
Q ss_pred HHHHhhCCC-----------CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcccccc
Q psy216 586 SLLALKNIM-----------SPNHLV-NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYI 647 (650)
Q Consensus 586 al~~i~~~~-----------~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~~~~ 647 (650)
+++.|+++. .+.++. ..+++.+..+.. ...|.|.|||||+|++|||.||+||+.|+..+.+
T Consensus 74 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 999998721 121111 234444455544 3589999999999999999999999999987665
No 5
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.85 E-value=1.3e-21 Score=183.21 Aligned_cols=124 Identities=15% Similarity=0.206 Sum_probs=92.4
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEcccee---eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHH
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITETESQ---VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~---~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~ 585 (650)
..+.||||||+.++ .+|+|+|+...+. ..+....+||+.||+.|++.||+.+.+. .+|.|+|||++
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~~---------~~v~I~tDS~~ 75 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFSLTTNNRMELLAPIVALEALKEP---------CKIILTSDSQY 75 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTCSSC---------CEEEEEECCHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcCCCccHHHHHHHHHHHHHHhccC---------CeEEEEeCHHH
Confidence 46899999999765 4789998863221 1222235799999999999999987531 56999999999
Q ss_pred HHHHhhCC--------C---CchhH-HHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhccc
Q psy216 586 SLLALKNI--------M---SPNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSY 644 (650)
Q Consensus 586 al~~i~~~--------~---~~~~~-~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~ 644 (650)
+++.|.++ . .+.+. -..+++.+..+.. ...|.|.|||||+|++|||.||+||+.|+..
T Consensus 76 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 76 MRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 99999872 1 11111 1233344444444 3589999999999999999999999999976
No 6
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.85 E-value=1.6e-21 Score=182.88 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=92.4
Q ss_pred cEEEEECCCCCC--CceeEEEEEcccee---eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHH
Q psy216 512 SLFCYTDGSKTA--ANSGCAYITETESQ---VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586 (650)
Q Consensus 512 ~~~IyTDgS~~~--~~~G~g~v~~~~~~---~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~a 586 (650)
.+.||||||+.+ +..|+|+++...+. ..+....+||++||++|++.||+.+ + . .+|.|+|||+++
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~--~-------~~v~I~tDS~~v 92 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E--G-------KKLNVYTDSRYA 92 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B--T-------SEEEEEECCHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c--C-------ceEEEEEchHHH
Confidence 589999999974 45788887753222 2345567899999999999999998 2 1 679999999999
Q ss_pred HHHhhCCC-----CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCC-----CCchhhhchhhhhhcccccc
Q psy216 587 LLALKNIM-----SPNHLVNNILVKINELKILNITVKFLWIPSHLG-----IAGNVQVPFLEILKSSYKYI 647 (650)
Q Consensus 587 l~~i~~~~-----~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~g-----i~gNe~AD~LA~~~~~~~~~ 647 (650)
++.|-... ...+++++++ .++ ..+..|.|+|||||+| ++|||.||+||+.|+..+..
T Consensus 93 i~~iw~~~~g~~v~n~dl~~~l~---~~l-~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 93 FATAHVHSEGREIKNKNEILALL---KAL-FLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp HHHHHSCCCSCCCSSHHHHHHHH---HHT-TSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhcccCCCcccCHHHHHHHH---HHH-hcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 99993212 2334344333 223 3578999999999999 99999999999999876543
No 7
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.84 E-value=2.4e-22 Score=185.80 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=96.9
Q ss_pred CCcEEEEECCCCCCCceeEEEEEcccee---ee--cC--CC--CCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEE
Q psy216 510 QNSLFCYTDGSKTAANSGCAYITETESQ---VF--KL--YN--ENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~~G~g~v~~~~~~---~~--~~--~~--~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~ 580 (650)
.+.+.||||||+.++.+|+|+|+...+. .. +. +. .+||++||++|++.||+.+.+.. .+|.|+
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~--------~~v~I~ 75 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLG--------VKIRIL 75 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHT--------CCCCBS
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCC--------CeEEEE
Confidence 4568999999999977999999863322 12 22 21 36999999999999999987643 248899
Q ss_pred eccHHHHHHhhCCC-CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhccccccc
Q psy216 581 TDSKSSLLALKNIM-SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKYIQ 648 (650)
Q Consensus 581 sDS~~al~~i~~~~-~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~~~~~ 648 (650)
|||+.+.+.+.+.. ..........+.++++.. .|.|.|||||+|++|||.||+||+.|+..+.++
T Consensus 76 tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~~ 141 (147)
T 2kq2_A 76 HDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDLE 141 (147)
T ss_dssp SCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCTT
T ss_pred ECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccccc
Confidence 99998888887654 333334444445555543 899999999999999999999999998876543
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.82 E-value=3e-21 Score=182.05 Aligned_cols=126 Identities=15% Similarity=0.066 Sum_probs=93.2
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEcccee---eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHH
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITETESQ---VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~---~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~ 585 (650)
..+.||||||+.++ .+|+|+|+..... ..+....+||+.||++|++.||+.+.+. .+|.|+|||++
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~---------~~v~I~tDS~~ 77 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP---------CEVDLYTDSHY 77 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC---------CEEEEECCCHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC---------CeEEEEeChHH
Confidence 45789999999865 4789999863221 1222235799999999999999987542 46999999999
Q ss_pred HHHHhhC----------CC--CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhccccc
Q psy216 586 SLLALKN----------IM--SPNHLV-NNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYKY 646 (650)
Q Consensus 586 al~~i~~----------~~--~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~~~ 646 (650)
+++.|.+ +. .+..+. .++++.+..+... ..|.|.|||||+|++|||.||+||+.|+....
T Consensus 78 vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 78 LKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP-HRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT-SEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc-CeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 9999988 21 111111 2344444444443 58999999999999999999999999987543
No 9
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.82 E-value=4.3e-20 Score=172.27 Aligned_cols=128 Identities=17% Similarity=0.282 Sum_probs=95.5
Q ss_pred CCceEEEEcCCCCCCc-----eeEEEEecC-Cce--eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEe
Q psy216 194 QNSLFCYTDGSKTAAN-----SGCAYITET-ESQ--VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICT 265 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~~-----~G~avv~~~-~~~--~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~t 265 (650)
++.+.||||||...++ .|+|+|... ... +..++..+|++.||+.|+..||+.+... ...++.|+|
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~-------~~~~v~i~t 77 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ-------NINKLVLYT 77 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT-------TCCEEEEEE
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC-------CCceEEEEE
Confidence 4678999999987532 788977433 222 5566667899999999999999999863 167899999
Q ss_pred CcHHHHHHHhCC---------C-C-CcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccCC
Q psy216 266 DSKSSLLALKNI---------M-S-PNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAP 329 (650)
Q Consensus 266 Ds~sal~~l~~~---------~-~-~s~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~ 329 (650)
||+.+++.|... . . ..++ -..+...+..+.. +..|.|.|||||+|++|||.||+|||+|+..+
T Consensus 78 DS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 78 NSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp SCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred CcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 999999999861 0 0 1011 1233333333333 46799999999999999999999999998764
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.81 E-value=3.2e-21 Score=180.59 Aligned_cols=125 Identities=18% Similarity=0.152 Sum_probs=86.5
Q ss_pred CcEEEEECCCCCCC--c-----eeEEEEEcc---ceeee---c-CCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCe
Q psy216 511 NSLFCYTDGSKTAA--N-----SGCAYITET---ESQVF---K-LYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDS 576 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~-----~G~g~v~~~---~~~~~---~-~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~ 576 (650)
-.++|||||||.+| + .|+|+|+.. ..... . .....+++.||+.|+..||+.+.+.. .+
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~--------~~ 77 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP--------GP 77 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS--------SC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC--------Ce
Confidence 45789999999765 2 789998852 11221 1 12345677777777777777766521 46
Q ss_pred EEEEeccHHHHHHhhCCC-----------CchhHH-HHHHHHHHHHhhcCCcEEEEEeCCCCCC------Cchhhhchhh
Q psy216 577 IFICTDSKSSLLALKNIM-----------SPNHLV-NNILVKINELKILNITVKFLWIPSHLGI------AGNVQVPFLE 638 (650)
Q Consensus 577 i~I~sDS~~al~~i~~~~-----------~~~~~~-~~i~~~i~~l~~~~~~v~~~WVPgH~gi------~gNe~AD~LA 638 (650)
|.|+|||+|+++.|..+. .+.++. .++++.+.++......|.|.|||||+|+ +|||.||+||
T Consensus 78 v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA 157 (165)
T 2lsn_A 78 VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLA 157 (165)
T ss_dssp EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHH
T ss_pred EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHH
Confidence 999999999999997531 122111 3344444444555678999999999995 5899999999
Q ss_pred hhhcc
Q psy216 639 ILKSS 643 (650)
Q Consensus 639 ~~~~~ 643 (650)
+.|+.
T Consensus 158 ~~gA~ 162 (165)
T 2lsn_A 158 TQGSY 162 (165)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99874
No 11
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.79 E-value=1.7e-19 Score=166.72 Aligned_cols=118 Identities=21% Similarity=0.152 Sum_probs=88.4
Q ss_pred CceEEEEcCCCCCC--ceeEEEE-ecCCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcH
Q psy216 195 NSLFCYTDGSKTAA--NSGCAYI-TETESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268 (650)
Q Consensus 195 ~~~~iyTDGS~~~~--~~G~avv-~~~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~ 268 (650)
..+.||||||...+ ..|+|++ .+.+.. +..++ .+|++.||+.|+..||+.+.. ..++.|+|||+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~---------~~~v~I~tDS~ 72 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE---------PARVQLYSDSA 72 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS---------CCEEEEEESCH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc---------cCcEEEEeChH
Confidence 46899999998764 3888855 344333 33443 689999999999999999863 56899999999
Q ss_pred HHHHHHhCC---------------CC--CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhcc
Q psy216 269 SSLLALKNI---------------MS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQN 327 (650)
Q Consensus 269 sal~~l~~~---------------~~--~s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~ 327 (650)
.++..|... .+ ...+.+.+...+. ...|.|.|||||+|++|||.||+|||+|+.
T Consensus 73 ~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~-----~~~v~~~~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 73 YLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTT-----LHRVTFHKVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp HHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHH-----HSEEEEEECCC-CCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHh-----hCceEEEEcCCcCCcHhHHHHHHHHHHHHH
Confidence 999999872 01 1234444443222 247999999999999999999999999975
No 12
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.79 E-value=3.9e-20 Score=170.91 Aligned_cols=127 Identities=17% Similarity=0.077 Sum_probs=95.9
Q ss_pred CCCceEEEEcCCCCCCceeEEEE-ecCCce---ee-ec--CC--CccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEE
Q psy216 193 NQNSLFCYTDGSKTAANSGCAYI-TETESQ---VF-KL--YN--ENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFI 263 (650)
Q Consensus 193 ~~~~~~iyTDGS~~~~~~G~avv-~~~~~~---~~-~l--~~--~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i 263 (650)
+++.+.||||||...+..|+|+| .+.+.. +. +. +. .+|++.||+.|+..||+.+... + . ++.|
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~---~----~-~v~I 74 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL---G----V-KIRI 74 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH---T----C-CCCB
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC---C----C-eEEE
Confidence 45678999999999877999955 343332 33 33 22 3699999999999999988764 1 4 8999
Q ss_pred EeCcHHHHHHHhCCCCC-cHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccCCC
Q psy216 264 CTDSKSSLLALKNIMSP-NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL 330 (650)
Q Consensus 264 ~tDs~sal~~l~~~~~~-s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~ 330 (650)
+|||+++.+-+.+.... .+......+.+..+.. .|.|.|||||+|++|||.||+|||+|+..+.
T Consensus 75 ~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 75 LHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp SSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCC
T ss_pred EECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHHHHHhccc
Confidence 99999888777664433 3344444444444433 8999999999999999999999999998654
No 13
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.78 E-value=7e-19 Score=162.74 Aligned_cols=124 Identities=27% Similarity=0.365 Sum_probs=90.6
Q ss_pred CCCceEEEEcCCCCCC--ceeEEEEecCCce-eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcHH
Q psy216 193 NQNSLFCYTDGSKTAA--NSGCAYITETESQ-VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKS 269 (650)
Q Consensus 193 ~~~~~~iyTDGS~~~~--~~G~avv~~~~~~-~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~s 269 (650)
.++.+.||||||...+ ..|+|++...+.. ...+ ..+|++.||+.|+..||+.+ ..++.|+|||+.
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~-----------~~~v~i~tDS~~ 76 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS-----------GLEVNIVTDSQY 76 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS-----------CSEEEEEESCHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC-----------CCcEEEEeCcHH
Confidence 4567899999998653 3788866443333 4444 47899999999999999974 467999999999
Q ss_pred HHHHHhCC-----------CCCcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccC
Q psy216 270 SLLALKNI-----------MSPNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328 (650)
Q Consensus 270 al~~l~~~-----------~~~s~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 328 (650)
+++.|... ....++ -++++..+..+......|.|.|||||+|++|||.||+|||+|+..
T Consensus 77 v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 77 ALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 99999763 111111 122333332222357899999999999999999999999999864
No 14
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.77 E-value=7.5e-19 Score=161.31 Aligned_cols=121 Identities=14% Similarity=0.120 Sum_probs=97.3
Q ss_pred cEEEEECCCCCCC--ceeEEEEEccc--e----eeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEecc
Q psy216 512 SLFCYTDGSKTAA--NSGCAYITETE--S----QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDS 583 (650)
Q Consensus 512 ~~~IyTDgS~~~~--~~G~g~v~~~~--~----~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS 583 (650)
.++||||||+.++ .+|+|+++... + ...+....+||+.||+.|++.||+.+.+... .+|.|+|||
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~-------~~v~i~tDS 75 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGA-------TEAAVLMDS 75 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTC-------SEEEEEESC
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCC-------ceEEEEeCh
Confidence 4799999999866 57999988632 1 1222233689999999999999999987544 679999999
Q ss_pred HHHHHHhhCCC-CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216 584 KSSLLALKNIM-SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSS 643 (650)
Q Consensus 584 ~~al~~i~~~~-~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~ 643 (650)
+++++.+++.. ..+..+..++..+..+..++..|.|.|||+ ++||.||+||+.|..
T Consensus 76 ~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 76 KLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMD 132 (141)
T ss_dssp HHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHH
Confidence 99999999854 445556667777788888889999999995 789999999998864
No 15
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.77 E-value=4.5e-19 Score=165.38 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=92.1
Q ss_pred ceEEEEcCCCCCC--ceeEEEE-ecCCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcHH
Q psy216 196 SLFCYTDGSKTAA--NSGCAYI-TETESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKS 269 (650)
Q Consensus 196 ~~~iyTDGS~~~~--~~G~avv-~~~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~s 269 (650)
.+.||||||...+ ..|+|+| .+.+.. +..+ ..+|++.||+.|+..||+.+.. ..++.|+|||+.
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~---------~~~v~I~tDS~~ 73 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE---------HAEVILSTDSQY 73 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS---------CCEEEEEECCHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc---------CCcEEEEeCHHH
Confidence 5789999999853 3888855 333332 4444 3678999999999999998863 468999999999
Q ss_pred HHHHHhC--------CC-C--CcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccCCCC
Q psy216 270 SLLALKN--------IM-S--PNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPLL 331 (650)
Q Consensus 270 al~~l~~--------~~-~--~s~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~~ 331 (650)
+++.|.. .. . ..++ -..++..+..+.. ...|.|.|||||+|++|||.||+|||+|+..+.+
T Consensus 74 vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 74 VRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 9999986 11 0 0111 1223333334433 4689999999999999999999999999987654
No 16
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.77 E-value=6.5e-19 Score=165.20 Aligned_cols=123 Identities=21% Similarity=0.225 Sum_probs=91.5
Q ss_pred ceEEEEcCCCC--CCceeEEEE-ecCCce--eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcHHH
Q psy216 196 SLFCYTDGSKT--AANSGCAYI-TETESQ--VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270 (650)
Q Consensus 196 ~~~iyTDGS~~--~~~~G~avv-~~~~~~--~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~sa 270 (650)
.+.||||||.. ++..|+|++ ...+.. ..+++..+|++.||++|+..||+.+ . ...+.|+|||+.+
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~--~--------~~~v~I~tDS~~v 92 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA--E--------GKKLNVYTDSRYA 92 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT--B--------TSEEEEEECCHHH
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc--c--------CceEEEEEchHHH
Confidence 58999999997 355788854 444433 3356678899999999999999998 2 5689999999999
Q ss_pred HHHHhCCCCCcHH-HHH-HHHHHHHhhhcCceEEEEEecCCCC-----CCCcchhcHHHhhhccCC
Q psy216 271 LLALKNIMSPNHL-VNN-ILVKINELKILNITVKFLWIPSHLG-----IAGNVQVDELAKNSQNAP 329 (650)
Q Consensus 271 l~~l~~~~~~s~~-~~~-i~~~~~~l~~~~~~v~~~Wvp~H~g-----i~gNe~AD~lAk~a~~~~ 329 (650)
++.+-......++ -.+ +...+..+. .+..|.|.|||||+| ++|||.||+|||+|+..+
T Consensus 93 i~~iw~~~~g~~v~n~dl~~~l~~~l~-~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 93 FATAHVHSEGREIKNKNEILALLKALF-LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHHSCCCSCCCSSHHHHHHHHHHTT-SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccCCCcccCHHHHHHHHHHHh-cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcC
Confidence 9998422221221 112 222223333 578999999999999 999999999999999754
No 17
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.76 E-value=7.9e-19 Score=160.80 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEcc-cee----eecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEecc
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITET-ESQ----VFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDS 583 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~-~~~----~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS 583 (650)
..++||||||+.++ .+|+|+++.+ .+. ..+....+||+.||+.|++.||+.+.+...... ..+|.|+|||
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~---~~~v~i~tDS 78 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLV---DMEVEVRMDS 78 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGT---TCEEEEEESC
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCC---CceEEEEeCh
Confidence 35799999999765 5789998864 221 122223579999999999999999987543100 1279999999
Q ss_pred HHHHHHhhCCC-CchhHHHHHHHHHHHH-hhcCCcEEEEEeCCCCCCCchhhhchhhhhhcc
Q psy216 584 KSSLLALKNIM-SPNHLVNNILVKINEL-KILNITVKFLWIPSHLGIAGNVQVPFLEILKSS 643 (650)
Q Consensus 584 ~~al~~i~~~~-~~~~~~~~i~~~i~~l-~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~ 643 (650)
+++++.+++.. ..+..+..++..+..+ ..++..|.|.|||+ +|||.||+||+.|..
T Consensus 79 ~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 79 ELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp HHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 99999999865 2333344555666667 67777999999994 789999999999865
No 18
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.76 E-value=9e-19 Score=163.86 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=91.1
Q ss_pred CceEEEEcCCCCCC--ceeEEEE-ecCCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcH
Q psy216 195 NSLFCYTDGSKTAA--NSGCAYI-TETESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268 (650)
Q Consensus 195 ~~~~iyTDGS~~~~--~~G~avv-~~~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~ 268 (650)
..+.||||||...+ ..|+|+| .+.+.. +..++ .+|++.||+.|+..||+.+.. ..++.|+|||+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~---------~~~v~I~tDS~ 74 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE---------PCKIILTSDSQ 74 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS---------CCEEEEEECCH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc---------CCeEEEEeCHH
Confidence 35899999999753 3888865 333332 33443 588999999999999998742 37899999999
Q ss_pred HHHHHHhC--------CCC---CcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccC-CC
Q psy216 269 SSLLALKN--------IMS---PNHL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA-PL 330 (650)
Q Consensus 269 sal~~l~~--------~~~---~s~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~-~~ 330 (650)
.+++.|.. ... ..++ -..++..+..+.. ...|.|.|||||+|++|||.||+|||+|+.. +.
T Consensus 75 ~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~~ 148 (158)
T 2e4l_A 75 YMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENERCDQLARAAAEANPT 148 (158)
T ss_dssp HHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHHHHHHHHHHHHHhchh
Confidence 99999987 211 0111 1122333333333 3699999999999999999999999999987 53
No 19
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.74 E-value=3.9e-18 Score=191.51 Aligned_cols=118 Identities=26% Similarity=0.363 Sum_probs=94.0
Q ss_pred CCcEEEEECCCCCCCc--eeEEEEEccceeeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHHH
Q psy216 510 QNSLFCYTDGSKTAAN--SGCAYITETESQVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSL 587 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~--~G~g~v~~~~~~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~al 587 (650)
.+.+.||||||+.+++ +|+|+++.......+....+||+.||++|++.||+. .. .++.|+|||++|+
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~TNn~aEl~A~i~aL~~----~~-------~~v~I~tDS~~v~ 502 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAFAMALTD----SG-------PKVNIIVDSQYVM 502 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEESSCCHHHHHHHHHHHHHHT----SC-------SEEEEEESCHHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccCCCCCHHHHHHHHHHHHHHc----CC-------CeEEEEEehHHHH
Confidence 3468999999997664 788988875433333334689999999999999987 12 6799999999999
Q ss_pred HHhhCCC--CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhc
Q psy216 588 LALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKS 642 (650)
Q Consensus 588 ~~i~~~~--~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~ 642 (650)
+.|+++. +++++.+.+.+.+ ..+..|.|.|||||+|++|||.||+||+.|.
T Consensus 503 ~~i~~~~~~~~~~l~~~~~~~~----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 503 GIVASQPTESESKIVNQIIEEM----IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHTCCSEESCHHHHHHHHHH----HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHhcccccccHHHHHHHHHHh----ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 9999876 5566666554432 3367899999999999999999999999874
No 20
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.73 E-value=4.9e-18 Score=190.84 Aligned_cols=116 Identities=28% Similarity=0.389 Sum_probs=90.3
Q ss_pred CCcEEEEECCCCCCCc--eeEEEEEccce-eeecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHH
Q psy216 510 QNSLFCYTDGSKTAAN--SGCAYITETES-QVFKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~--~G~g~v~~~~~-~~~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~a 586 (650)
.+.+.||||||+.+++ +|+|+++.... ...+ ...+||+.||+.|++.||+.+ . .++.|+|||++|
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~-~~~~TNn~aEl~Ai~~aL~~~----~-------~~v~I~tDS~~v 504 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVP-LTNTTNQKTELQAIYLALQDS----G-------LEVNIVTDSQYA 504 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEE-ECSCCHHHHHHHHHHHHHHHS----C-------SEEEEEECCHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEec-CCCCCHHHHHHHHHHHHHHhC----C-------CcEEEEeChHHH
Confidence 3468999999987653 78888886433 2233 346899999999999999998 1 569999999999
Q ss_pred HHHhhCCC--CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhh
Q psy216 587 LLALKNIM--SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILK 641 (650)
Q Consensus 587 l~~i~~~~--~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~ 641 (650)
++.|+++. +++++++++++. +.. ...|.|.|||||+|++|||.||+||+.|
T Consensus 505 i~~i~~~~~~~~~~l~~~~~~~---l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 505 LGIIQAQPDKSESELVNQIIEQ---LIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHTTCCSEESSHHHHHHHHH---HHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHhcCCccCCHHHHHHHHHH---Hhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 99999987 356777665543 333 4589999999999999999999999875
No 21
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.73 E-value=2.2e-18 Score=162.49 Aligned_cols=125 Identities=18% Similarity=0.108 Sum_probs=90.8
Q ss_pred CceEEEEcCCCCCC--ceeEEEEe-cCCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcH
Q psy216 195 NSLFCYTDGSKTAA--NSGCAYIT-ETESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268 (650)
Q Consensus 195 ~~~~iyTDGS~~~~--~~G~avv~-~~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~ 268 (650)
..+.||||||...+ ..|+|+|. +.+.. +... ..+|++.||+.|+..||+.+.. ..++.|+|||+
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~---------~~~v~I~tDS~ 76 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE---------PCEVDLYTDSH 76 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS---------CCEEEEECCCH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc---------CCeEEEEeChH
Confidence 35789999999853 38888663 33322 3223 3688999999999999998754 34899999999
Q ss_pred HHHHHHhCC----------CCCc--HH-HHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccCCC
Q psy216 269 SSLLALKNI----------MSPN--HL-VNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNAPL 330 (650)
Q Consensus 269 sal~~l~~~----------~~~s--~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~~~ 330 (650)
.++..|... ...+ ++ -..++..+..+.. ...|.|.|||||+|++|||.||+|||+|+....
T Consensus 77 ~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 77 YLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 999999881 1111 11 1223333333333 369999999999999999999999999998653
No 22
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.72 E-value=6.7e-18 Score=156.55 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=90.9
Q ss_pred EEEEECCCCC-C--CceeE-EEEEccceee---e--cCC---CCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEE
Q psy216 513 LFCYTDGSKT-A--ANSGC-AYITETESQV---F--KLY---NENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFIC 580 (650)
Q Consensus 513 ~~IyTDgS~~-~--~~~G~-g~v~~~~~~~---~--~~~---~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~ 580 (650)
+.||||||+. + +++|+ |+++...+.. . ... ..+||+.||+.|++.||+.+.+... .+|.|+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~-------~~v~i~ 74 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGI-------SSPIIK 74 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTC-------CSCEEE
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCC-------CEEEEE
Confidence 5799999987 3 35785 8888643322 1 112 3689999999999999999987544 569999
Q ss_pred eccHHHHHHhhCCC-CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhchhhhhhcccc
Q psy216 581 TDSKSSLLALKNIM-SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPFLEILKSSYK 645 (650)
Q Consensus 581 sDS~~al~~i~~~~-~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~LA~~~~~~~ 645 (650)
|||+++++.++++. ........+++.+..+..+. .|.|.|||+| +|+.||+||+.|....
T Consensus 75 tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~----~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 75 GDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPRE----ENKEADRLSRVAYELV 135 (149)
T ss_dssp ESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGG----GCHHHHHHHHHHHHHH
T ss_pred eChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCc----ccHHHHHHHHHHHHhh
Confidence 99999999999874 22223445555555555544 5999999995 6999999999998654
No 23
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.68 E-value=6.2e-17 Score=151.47 Aligned_cols=126 Identities=18% Similarity=0.152 Sum_probs=86.3
Q ss_pred CCceEEEEcCCCCCC--c-----eeEEEEe-cCC--ce---eee-cCCCccchhHHHHHHHHHHHHHHhcCCCCccccCC
Q psy216 194 QNSLFCYTDGSKTAA--N-----SGCAYIT-ETE--SQ---VFK-LYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD 259 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~--~-----~G~avv~-~~~--~~---~~~-l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~ 259 (650)
...++||||||...+ . .|+||+. ..+ .. ... .....+...||+.|+..||+.+... ..
T Consensus 5 ~~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~--------~~ 76 (165)
T 2lsn_A 5 QYEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI--------PG 76 (165)
T ss_dssp CCSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS--------SS
T ss_pred CceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC--------CC
Confidence 456899999998642 2 7888653 222 12 222 2346777888888888888877664 45
Q ss_pred eEEEEeCcHHHHHHHhCC-----------CCCcHH-HHHHHHHHHHhhhcCceEEEEEecCCCCC------CCcchhcHH
Q psy216 260 SVFICTDSKSSLLALKNI-----------MSPNHL-VNNILVKINELKILNITVKFLWIPSHLGI------AGNVQVDEL 321 (650)
Q Consensus 260 ~~~i~tDs~sal~~l~~~-----------~~~s~~-~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi------~gNe~AD~l 321 (650)
+|.|+|||+.+++.|..- ....++ -.+++..+..+......|.|.|||||+|+ +|||.||+|
T Consensus 77 ~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~L 156 (165)
T 2lsn_A 77 PVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKL 156 (165)
T ss_dssp CEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHH
T ss_pred eEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHH
Confidence 799999999999999640 111111 12233333333344568999999999996 589999999
Q ss_pred Hhhhcc
Q psy216 322 AKNSQN 327 (650)
Q Consensus 322 Ak~a~~ 327 (650)
|++|+.
T Consensus 157 A~~gA~ 162 (165)
T 2lsn_A 157 ATQGSY 162 (165)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 999874
No 24
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.62 E-value=1.1e-15 Score=139.60 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=88.8
Q ss_pred ceEEEEcCCCCCC--ceeEEEE-ecCC-ce----eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCC----eEEE
Q psy216 196 SLFCYTDGSKTAA--NSGCAYI-TETE-SQ----VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRD----SVFI 263 (650)
Q Consensus 196 ~~~iyTDGS~~~~--~~G~avv-~~~~-~~----~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~----~~~i 263 (650)
.+.||||||...+ ..|+|++ .+.+ .. ...++ .+|++.||+.|+..||+.+... ..+ ++.|
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~-------~~~~~~~~v~i 74 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIG-ETTNNVAEYEALIRALEDLQMF-------GDKLVDMEVEV 74 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEE-EECHHHHHHHHHHHHHHHHGGG-------GGGGTTCEEEE
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCC-CCchHHHHHHHHHHHHHHHHHc-------CCCCCCceEEE
Confidence 5789999999754 4888855 3422 22 33333 5799999999999999999873 144 9999
Q ss_pred EeCcHHHHHHHhCCCC-CcHHHHHHHHHHHHh-hhcCceEEEEEecCCCCCCCcchhcHHHhhhcc
Q psy216 264 CTDSKSSLLALKNIMS-PNHLVNNILVKINEL-KILNITVKFLWIPSHLGIAGNVQVDELAKNSQN 327 (650)
Q Consensus 264 ~tDs~sal~~l~~~~~-~s~~~~~i~~~~~~l-~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~ 327 (650)
+|||+.+++.+.+... .+.-+..+...+..+ ......|.|.|||. +|||.||+|||+|..
T Consensus 75 ~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 75 RMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp EESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred EeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 9999999999998553 222233344444444 44456899999993 999999999999874
No 25
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.62 E-value=2.1e-15 Score=138.11 Aligned_cols=121 Identities=15% Similarity=0.165 Sum_probs=93.7
Q ss_pred ceEEEEcCCCCCC--ceeEEEE-ecC--Cce----eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeC
Q psy216 196 SLFCYTDGSKTAA--NSGCAYI-TET--ESQ----VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTD 266 (650)
Q Consensus 196 ~~~iyTDGS~~~~--~~G~avv-~~~--~~~----~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tD 266 (650)
.+.||||||...+ ..|+|++ .+. +.. ...++ .+|++.||+.|+..||+.+... ..+++.|+||
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~-------~~~~v~i~tD 74 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKL-------GATEAAVLMD 74 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHH-------TCSEEEEEES
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHC-------CCceEEEEeC
Confidence 4789999998754 4888854 332 221 33333 7899999999999999999873 1678999999
Q ss_pred cHHHHHHHhCCC-CCcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccC
Q psy216 267 SKSSLLALKNIM-SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328 (650)
Q Consensus 267 s~sal~~l~~~~-~~s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 328 (650)
|+.+++.+.+.. .....+..+...+..+......|.|.|||+ ++||.||+|||+|...
T Consensus 75 S~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 75 SKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDAMDA 133 (141)
T ss_dssp CHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHHHHH
Confidence 999999999853 234445555556666766678999999995 8999999999998753
No 26
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.57 E-value=7.1e-15 Score=165.10 Aligned_cols=116 Identities=31% Similarity=0.432 Sum_probs=87.6
Q ss_pred CCceEEEEcCCCCCC--ceeEEEEecCCce-eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcHHH
Q psy216 194 QNSLFCYTDGSKTAA--NSGCAYITETESQ-VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~--~~G~avv~~~~~~-~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~sa 270 (650)
++.+.+|||||...+ ..|+|++...+.. ..+. ..+|++.||+.|+..||+.+ ..++.|+|||+.+
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~-----------~~~v~I~tDS~~v 504 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS-----------GLEVNIVTDSQYA 504 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS-----------CSEEEEEECCHHH
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC-----------CCcEEEEeChHHH
Confidence 456999999998643 3788866544433 4443 46899999999999999988 3579999999999
Q ss_pred HHHHhCCCCC--cHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhh
Q psy216 271 LLALKNIMSP--NHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNS 325 (650)
Q Consensus 271 l~~l~~~~~~--s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a 325 (650)
+..+.+.... .++.+++.+ .+.. ...|.|.|||||+|++|||.||+|||+|
T Consensus 505 i~~i~~~~~~~~~~l~~~~~~---~l~~-~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 505 LGIIQAQPDKSESELVNQIIE---QLIK-KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp HHHHTTCCSEESSHHHHHHHH---HHHH-CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred HHHHhcCCccCCHHHHHHHHH---HHhc-CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 9999886543 345554442 3332 4589999999999999999999999986
No 27
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.57 E-value=5e-15 Score=166.25 Aligned_cols=117 Identities=29% Similarity=0.425 Sum_probs=90.1
Q ss_pred CCceEEEEcCCCCCCc--eeEEEEecCCce-eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcHHH
Q psy216 194 QNSLFCYTDGSKTAAN--SGCAYITETESQ-VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSKSS 270 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~~--~G~avv~~~~~~-~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~sa 270 (650)
++.+.+|||||...++ .|+|++...+.. ...++ .+|++.||+.|+..||+. . ..++.|+|||+.+
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~-~~TNn~aEl~A~i~aL~~---~--------~~~v~I~tDS~~v 501 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLE-QTTNQQAELEAFAMALTD---S--------GPKVNIIVDSQYV 501 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHT---S--------CSEEEEEESCHHH
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccCC-CCCHHHHHHHHHHHHHHc---C--------CCeEEEEEehHHH
Confidence 4568999999987543 788866433333 44443 688999999999999987 2 5789999999999
Q ss_pred HHHHhCCCC--CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhc
Q psy216 271 LLALKNIMS--PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQ 326 (650)
Q Consensus 271 l~~l~~~~~--~s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~ 326 (650)
+..+.+... ..++.+++. +.+ .....|.|.|||||+|++|||.||+|||+|+
T Consensus 502 ~~~i~~~~~~~~~~l~~~~~---~~~-~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 502 MGIVASQPTESESKIVNQII---EEM-IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HHHHHTCCSEESCHHHHHHH---HHH-HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred HHHHhcccccccHHHHHHHH---HHh-ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 999987542 234544443 222 2367899999999999999999999999984
No 28
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.56 E-value=1e-14 Score=135.04 Aligned_cols=120 Identities=16% Similarity=0.185 Sum_probs=85.7
Q ss_pred eEEEEcCCCCC---CceeE-EE-EecCCce--e--eecC---CCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEE
Q psy216 197 LFCYTDGSKTA---ANSGC-AY-ITETESQ--V--FKLY---NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFIC 264 (650)
Q Consensus 197 ~~iyTDGS~~~---~~~G~-av-v~~~~~~--~--~~l~---~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~ 264 (650)
+.+|||||... +.+|+ |+ +.+.+.. . ...+ ..+|++.||+.|+..||+.+... ..+++.|+
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~-------g~~~v~i~ 74 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL-------GISSPIIK 74 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH-------TCCSCEEE
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc-------CCCEEEEE
Confidence 57999999872 45886 84 4443332 2 2223 37899999999999999999873 15789999
Q ss_pred eCcHHHHHHHhCCCC-CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcHHHhhhccC
Q psy216 265 TDSKSSLLALKNIMS-PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDELAKNSQNA 328 (650)
Q Consensus 265 tDs~sal~~l~~~~~-~s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~lAk~a~~~ 328 (650)
|||+.+++.+.+... .++....+...+..+.... .|.|.|||+ ++|+.||+|||+|+..
T Consensus 75 tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 75 GDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSRVAYEL 134 (149)
T ss_dssp ESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHHHHHHH
T ss_pred eChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHHHHHHh
Confidence 999999999988632 2222233333333332222 499999999 5999999999998863
No 29
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.30 E-value=8.9e-13 Score=119.89 Aligned_cols=116 Identities=12% Similarity=-0.020 Sum_probs=85.9
Q ss_pred CcEEEEECCCCCCC--ceeEEEEEccceee---ecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHH
Q psy216 511 NSLFCYTDGSKTAA--NSGCAYITETESQV---FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKS 585 (650)
Q Consensus 511 ~~~~IyTDgS~~~~--~~G~g~v~~~~~~~---~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~ 585 (650)
..+.||||||+.++ .+|+|+|+...+.. .+....+||+.||++|++.||+.+.+... +|.|+|||++
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~--------~v~i~tDS~~ 81 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS--------RKPIYSNSQT 81 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC--------CCCEEESCHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC--------eEEEEEehHH
Confidence 45789999999766 47899999743322 12122579999999999999999987431 4789999999
Q ss_pred HHHHhhCCC---------CchhHHHHHHHHHHHHhhcCCcEEEEEeCCCCCCCchhhhch
Q psy216 586 SLLALKNIM---------SPNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVPF 636 (650)
Q Consensus 586 al~~i~~~~---------~~~~~~~~i~~~i~~l~~~~~~v~~~WVPgH~gi~gNe~AD~ 636 (650)
+++.+++.. ...++.+.+.++..-+..+ .+....|.-|.+..||..||.
T Consensus 82 vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~--~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 82 AIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTH--TYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHC--CCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhC--CCceeEEEeccCccCcCcccc
Confidence 999998654 3445666666665556553 445555677999999999995
No 30
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.17 E-value=2.7e-11 Score=107.94 Aligned_cols=95 Identities=13% Similarity=-0.035 Sum_probs=68.5
Q ss_pred cEEEEECCCCCCC--ceeEEEEEccceee---ecCCCCCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHH
Q psy216 512 SLFCYTDGSKTAA--NSGCAYITETESQV---FKLYNENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSS 586 (650)
Q Consensus 512 ~~~IyTDgS~~~~--~~G~g~v~~~~~~~---~~~~~~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~a 586 (650)
...||||||+.+| ..|+|+|+...+.. .+....+||++||++|++.||+.+.+... ++.|+|||++|
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~~tTNN~aEl~A~i~aL~~l~~~~~--------~v~i~tDSqyV 76 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS--------RKPIYSNSQTA 76 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEEEECHHHHHHHHHHHHHHHHHHTTC--------CCCEEESCHHH
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCCCCchHHHHHHHHHHHHHHHHhCCC--------CEEEEcchHHH
Confidence 4579999999776 37886666533221 22223689999999999999999987432 37899999999
Q ss_pred HHHhhCCC---------CchhHHHHHHHHHHHHhhcC
Q psy216 587 LLALKNIM---------SPNHLVNNILVKINELKILN 614 (650)
Q Consensus 587 l~~i~~~~---------~~~~~~~~i~~~i~~l~~~~ 614 (650)
++.|.++. .+.++.+.+.++..-|....
T Consensus 77 i~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~ 113 (134)
T 4htu_A 77 IKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHT 113 (134)
T ss_dssp HHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcccCCCCCccCHHHHHHHHHHHHHHHhCC
Confidence 99998643 35567777776666666544
No 31
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=98.75 E-value=7.9e-09 Score=93.80 Aligned_cols=115 Identities=12% Similarity=-0.058 Sum_probs=82.9
Q ss_pred CceEEEEcCCCCC--CceeEEEEec-CCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCcH
Q psy216 195 NSLFCYTDGSKTA--ANSGCAYITE-TESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDSK 268 (650)
Q Consensus 195 ~~~~iyTDGS~~~--~~~G~avv~~-~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs~ 268 (650)
..+.||||||... +..|+|+|.. .+.. +..++ .+|+..||++|+..||+.+... .. ++.|+|||+
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~-------~~-~v~i~tDS~ 80 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER-------NS-RKPIYSNSQ 80 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHT-------TC-CCCEEESCH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhC-------CC-eEEEEEehH
Confidence 4568999999875 3488886543 3322 23333 5789999999999999999873 13 899999999
Q ss_pred HHHHHHhCCCC---------CcHHHHHHHHHHHHhhhcCceEEEEEecCCCCCCCcchhcH
Q psy216 269 SSLLALKNIMS---------PNHLVNNILVKINELKILNITVKFLWIPSHLGIAGNVQVDE 320 (650)
Q Consensus 269 sal~~l~~~~~---------~s~~~~~i~~~~~~l~~~~~~v~~~Wvp~H~gi~gNe~AD~ 320 (650)
.++..+.+... ...+.+.+..+...++. ..+....|.-|++.-||.-||-
T Consensus 81 ~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~~~~ge~pad~ 139 (142)
T 1zbf_A 81 TAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQTDKWGEIKADY 139 (142)
T ss_dssp HHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCHHHHCSCTTCC
T ss_pred HHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEeccCccCcCcccc
Confidence 99999987652 11345555555555654 4556666778999999999994
No 32
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.48 E-value=3.4e-07 Score=81.44 Aligned_cols=96 Identities=13% Similarity=-0.075 Sum_probs=67.0
Q ss_pred CCceEEEEcCCCCCC--ceeEE-EEecCCce---eeecCCCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEEEEeCc
Q psy216 194 QNSLFCYTDGSKTAA--NSGCA-YITETESQ---VFKLYNENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVFICTDS 267 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~--~~G~a-vv~~~~~~---~~~l~~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~i~tDs 267 (650)
+....||||||...+ ..|+| |+...+.. ...++ .+|+..||++|+..||+.+.+. ...+.|+|||
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~--------~~~v~i~tDS 73 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER--------NSRKPIYSNS 73 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHT--------TCCCCEEESC
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhC--------CCCEEEEcch
Confidence 345679999998753 38885 66554333 33333 7899999999999999999873 3348999999
Q ss_pred HHHHHHHhCCCC---------CcHHHHHHHHHHHHhhhcC
Q psy216 268 KSSLLALKNIMS---------PNHLVNNILVKINELKILN 298 (650)
Q Consensus 268 ~sal~~l~~~~~---------~s~~~~~i~~~~~~l~~~~ 298 (650)
+.++.-+.+..- ...+.+.+..+...|+...
T Consensus 74 qyVi~wi~~~~~kt~~~~~vkN~dLw~~ld~~~~~l~~~~ 113 (134)
T 4htu_A 74 QTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHT 113 (134)
T ss_dssp HHHHHHHHHTCCCCCCCCSSTTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCcccCCCCCccCHHHHHHHHHHHHHHHhCC
Confidence 999998876321 1235555555555666544
No 33
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=75.08 E-value=0.73 Score=49.61 Aligned_cols=43 Identities=12% Similarity=-0.049 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccHHHHHHhhCC
Q psy216 544 ENSVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSKSSLLALKNI 593 (650)
Q Consensus 544 ~~s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~~al~~i~~~ 593 (650)
..+++..|++||..|++....... ..+++|+||+. ++..+.+.
T Consensus 386 ~ys~~ekEllAi~~a~~~~~~yl~------g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 386 GWPPCLRMVAAIAVLTKDAGKLTM------GQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp SSCCSSHHHHHHHHHHHHHHGGGC------SSCEEEECSSC-TTTTSSST
T ss_pred ccchHHHHHHHHHHHHHHHHHHcC------CCcEEEEecCh-HHHHhCCC
Confidence 357889999999999999876432 26799999997 66666554
No 34
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=65.74 E-value=1.7 Score=46.60 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=48.3
Q ss_pred CCceEEEEcCCCCCCceeEEEEecC---Cce-----eeecC---CCccchhHHHHHHHHHHHHHHhcCCCCccccCCeEE
Q psy216 194 QNSLFCYTDGSKTAANSGCAYITET---ESQ-----VFKLY---NENSVFSSELLAIFMLLSHICNTRSRPEYIFRDSVF 262 (650)
Q Consensus 194 ~~~~~iyTDGS~~~~~~G~avv~~~---~~~-----~~~l~---~~~sv~~AEl~ai~~al~~~~~~~~~~~~~~~~~~~ 262 (650)
...+.+|||+|.. ++| ||..+. ... +..+. ..-+++.-|+.||..|++....- ..+..+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~y------l~g~~~~ 414 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKL------TMGQPLV 414 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGG------GCSSCEE
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHH------cCCCcEE
Confidence 3456899999843 333 344221 111 33332 35678899999999999999872 1267899
Q ss_pred EEeCcHHHHHHHhCC
Q psy216 263 ICTDSKSSLLALKNI 277 (650)
Q Consensus 263 i~tDs~sal~~l~~~ 277 (650)
|+||+. ++.-+.+.
T Consensus 415 v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 415 IKAPHA-VEALVKQP 428 (455)
T ss_dssp EECSSC-TTTTSSST
T ss_pred EEecCh-HHHHhCCC
Confidence 999996 55555543
No 35
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=42.71 E-value=45 Score=35.15 Aligned_cols=72 Identities=4% Similarity=-0.134 Sum_probs=41.9
Q ss_pred CCCceEEEEcCCCCCCceeEEEEecCC-ce--e--eecCCCccchhHHHHH-HHHHHHHHHhcCCCCccccCCeEEEEeC
Q psy216 193 NQNSLFCYTDGSKTAANSGCAYITETE-SQ--V--FKLYNENSVFSSELLA-IFMLLSHICNTRSRPEYIFRDSVFICTD 266 (650)
Q Consensus 193 ~~~~~~iyTDGS~~~~~~G~avv~~~~-~~--~--~~l~~~~sv~~AEl~a-i~~al~~~~~~~~~~~~~~~~~~~i~tD 266 (650)
+...+.++||+|.. ++..+++.+.+ .. + +.....-..++-|++| +..||+....-. -+.....++++||
T Consensus 321 ~~~~~~l~~das~~--g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl---~G~~~~~~i~~td 395 (428)
T 2zd1_B 321 PSKDLIAEIQKQGQ--GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVI---WGKTPKFKLPIQK 395 (428)
T ss_dssp TTSCCEEEEEEEET--TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHH---HSSCCEEEESSCH
T ss_pred CCCCEEEEEecCCC--CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEE---ECCCCcEECCccH
Confidence 45567999999952 22223443332 22 3 3333344566677777 999998776510 0112456788999
Q ss_pred cHH
Q psy216 267 SKS 269 (650)
Q Consensus 267 s~s 269 (650)
.+.
T Consensus 396 ~~~ 398 (428)
T 2zd1_B 396 ETW 398 (428)
T ss_dssp HHH
T ss_pred HHH
Confidence 964
No 36
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=34.18 E-value=33 Score=36.15 Aligned_cols=73 Identities=5% Similarity=-0.058 Sum_probs=41.5
Q ss_pred CCcEEEEECCCCCCCceeEEEEEccc------eeeecCCCCCcchHHHHHH-HHHHHHHHHhcc-CCcccccCCeEEEEe
Q psy216 510 QNSLFCYTDGSKTAANSGCAYITETE------SQVFKLYNENSVFSSELLA-IFMLLSHIYSTS-SRTEYIFRDSIFICT 581 (650)
Q Consensus 510 ~~~~~IyTDgS~~~~~~G~g~v~~~~------~~~~~~~~~~s~~~AEl~A-I~~AL~~~~~~~-~~~~~~~~~~i~I~s 581 (650)
...+.++||+|..+ .+|++..+. +..+........+.-|++| |..||+.-.... .. .+..++++|
T Consensus 322 ~~~~~l~~das~~g---~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~----~~~~~i~~t 394 (428)
T 2zd1_B 322 SKDLIAEIQKQGQG---QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGK----TPKFKLPIQ 394 (428)
T ss_dssp TSCCEEEEEEEETT---EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSS----CCEEEESSC
T ss_pred CCCEEEEEecCCCC---cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECC----CCcEECCcc
Confidence 34578999999432 334444322 1123322233455667777 999998765421 11 124578889
Q ss_pred ccHHHHHH
Q psy216 582 DSKSSLLA 589 (650)
Q Consensus 582 DS~~al~~ 589 (650)
|.+...-.
T Consensus 395 d~~~~~~~ 402 (428)
T 2zd1_B 395 KETWETWW 402 (428)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99865433
No 37
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=23.37 E-value=1.1e+02 Score=26.95 Aligned_cols=54 Identities=22% Similarity=0.132 Sum_probs=34.4
Q ss_pred CCceeEEEEEccceeeecCCCCC----cchHHHHHHHHHHHHHHHhccCCcccccCCeEEEEeccH
Q psy216 523 AANSGCAYITETESQVFKLYNEN----SVFSSELLAIFMLLSHIYSTSSRTEYIFRDSIFICTDSK 584 (650)
Q Consensus 523 ~~~~G~g~v~~~~~~~~~~~~~~----s~~~AEl~AI~~AL~~~~~~~~~~~~~~~~~i~I~sDS~ 584 (650)
+-.+|++++..+.....|..-+. .-..||..||..|... - . ..+ ..+.|++|..
T Consensus 35 ~f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G---~-~~l---~~i~v~~~~~ 92 (146)
T 2fr5_A 35 RFPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-G---Y-KDF---RAIAISSDLQ 92 (146)
T ss_dssp CCCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-T---C-CCE---EEEEEEESCS
T ss_pred CCCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-C---C-Cce---EEEEEEeCCC
Confidence 33689988877665555543332 2356999999999864 1 1 111 5688998854
No 38
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=21.38 E-value=47 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred CCCCCCCcccccceeccccccchhhhhh
Q psy216 410 PLCEWCNVQLSIQHILLECRKFRASRNK 437 (650)
Q Consensus 410 ~~C~~C~~~~t~~H~l~~Cp~~~~~R~~ 437 (650)
-.|+.||...+-.|.+-.||........
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~s 99 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCS 99 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCc
Confidence 4799999999999999999998766543
Done!