BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2160
(773 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BGC0|HTSF1_MOUSE HIV Tat-specific factor 1 homolog OS=Mus musculus GN=Htatsf1 PE=1
SV=1
Length = 757
Score = 272 bits (695), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 151/331 (45%), Positives = 211/331 (63%), Gaps = 13/331 (3%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+ H+ D T Y WD +K AWFPK+ +DF+A YQ +YGF + D S VQ
Sbjct: 37 GEAHSLGQPPDDTPYEWDLDKKAWFPKITEDFIATYQANYGF-----SSDGASSSTANVQ 91
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
K+V+ E P+ + G+KRK E WF + E+ +T VYVS LP D+T +E
Sbjct: 92 D-ANTKAVEEPPQKEVPETPDSKRKGEKRKAES-GWFHVEEDRNTNVYVSGLPPDITVDE 149
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+KKESV+LAL +LD EIR
Sbjct: 150 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 208
Query: 292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRG-ERSKNES 350
G K+ VE AKF +KGE YD K KK + +K Q+K DWRP++ G R ++E
Sbjct: 209 GYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSLQQKQLDWRPERRAGPNRLRHER 265
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE
Sbjct: 266 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 325
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKI 441
AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 326 ADHCIQTLDGRWFGGRQITAQAWDGTTDYQV 356
Score = 225 bits (573), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/228 (50%), Positives = 159/228 (69%), Gaps = 5/228 (2%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 133 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLK 191
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
KESV+LAL +LD EIRG K+ VE AKF +KGE YD K KK + +K Q+K
Sbjct: 192 KESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSLQQKQL 248
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 249 DWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 308
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 726
D+HP+GVA + F+EPE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 309 DRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQV 356
>sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog OS=Pongo abelii GN=HTATSF1 PE=2
SV=1
Length = 754
Score = 263 bits (672), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 214/348 (61%), Gaps = 33/348 (9%)
Query: 110 GYEGDTHTYTDS---------TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
G +GDT T TD T Y WD +K AWFPK+ +DF+A YQ +YGF
Sbjct: 25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGF------ 77
Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENP--KAEEKVVP---GQKRKPEPPKWFDIGEE- 214
A + VE+ V A E P KA E P G+KRK E WF + E+
Sbjct: 78 ---SNDGASSSTANVED--VHARTAEEPPQEKAPEPTDPRKKGEKRKAES-GWFHVEEDR 131
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+T VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-NQGNLKGDGLCCYLK 190
Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 334
+ESV+LAL +LD EIRG K+ VE AKF +KGE YD K KK + +K Q+K
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSMQQKQL 247
Query: 335 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 441
D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQV 355
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/253 (46%), Positives = 170/253 (67%), Gaps = 5/253 (1%)
Query: 475 EAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 534
E DP+ K +K++ + + NT VYVS LP D+T +EF+++M K G++M+D T
Sbjct: 107 EPTDPRKKGEKRKAESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTE 166
Query: 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAY 594
+ K+KLY D + KGD LC Y+K+ESV+LAL +LD EIRG K+ VE AKF +KGE Y
Sbjct: 167 EFKVKLYKD-NQGNLKGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-Y 224
Query: 595 DPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVT 653
D K KK + +K Q+K DWRP++ G R ++E V+I+KN+F P F+ D
Sbjct: 225 DASKKKKKCKDY--KKKLSMQQKQLDWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPL 282
Query: 654 LILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
++ E ++DLR ECSK G ++K++L D+HP+GVA + F++PE AD C + L+GRWFG RQI
Sbjct: 283 VLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 342
Query: 714 TAETWDGKTRYKI 726
TA+ WDG T Y++
Sbjct: 343 TAQAWDGTTDYQV 355
>sp|O43719|HTSF1_HUMAN HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1
Length = 755
Score = 263 bits (671), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 215/343 (62%), Gaps = 23/343 (6%)
Query: 110 GYEGDTHTYTDS---------TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
G +GDT T TD T Y WD +K AWFPK+ +DF+A YQ +YGF +
Sbjct: 25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGF--SNDG 81
Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
+ + V ++ E+ AP E A +K G+KRK E WF + E+ +T VY
Sbjct: 82 ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAES-GWFHVEEDRNTNVY 136
Query: 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
VS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESV+
Sbjct: 137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-NQGNLKGDGLCCYLKRESVE 195
Query: 280 LALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPD 339
LAL +LD EIRG K+ VE AKF +KGE YD K KK + +K Q+K DWRP+
Sbjct: 196 LALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSMQQKQLDWRPE 252
Query: 340 KMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
+ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+
Sbjct: 253 RRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD 312
Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 441
GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 313 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQV 355
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 159/228 (69%), Gaps = 5/228 (2%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKD-NQGNLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
+ESV+LAL +LD EIRG K+ VE AKF +KGE YD K KK + +K Q+K
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YDASKKKKKCKDY--KKKLSMQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 726
D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y++
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQV 355
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 18/317 (5%)
Query: 444 TAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503
TAE E + E+ G+ +R + E Y + KK + ++ E N V
Sbjct: 57 TAEATEGK----ESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEASPAPVINKAV 112
Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKES 562
Y+ LPLD+T +E EV +KCG++ K++D +IK+Y T+ T KGDAL + + ES
Sbjct: 113 YIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP--KGDALIVFFRSES 170
Query: 563 VDLALSILDGYEIR---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLF 619
V+LA + D E R G+K++V++A K E K +KK L ++ +++
Sbjct: 171 VELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQIS 230
Query: 620 DWRPDKMRG---ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV 676
W + + ++++K++F DK L+++ + D+ EE KCG V VV
Sbjct: 231 SWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVV 290
Query: 677 LHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK-----IQETAE 731
L+DK P+GV + F E A+AC L+ GR+F R + A +DGK R++ + E
Sbjct: 291 LYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDEE 350
Query: 732 EREARLKKWETFLEEED 748
+ E RL+K+ +LE +
Sbjct: 351 DEEKRLEKFADWLENSN 367
Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 139/254 (54%), Gaps = 14/254 (5%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKE 276
VY+ LPLD+T +E EV +KCG++ K++D +IK+Y T+ T KGDAL + + E
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP--KGDALIVFFRSE 169
Query: 277 SVDLALSILDGYEIR---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
SV+LA + D E R G+K++V++A K E K +KK L ++ +++
Sbjct: 170 SVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQI 229
Query: 334 FDWRPDKMRG---ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
W + + ++++K++F DK L+++ + D+ EE KCG V V
Sbjct: 230 SSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNV 289
Query: 391 VLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK-----IQETA 445
VL+DK P+GV + F E A+AC L+ GR+F R + A +DGK R++ +
Sbjct: 290 VLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDE 349
Query: 446 EEREARLKKWETFL 459
E+ E RL+K+ +L
Sbjct: 350 EDEEKRLEKFADWL 363
>sp|P53830|CUS2_YEAST Cold sensitive U2 snRNA suppressor 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CUS2 PE=1 SV=1
Length = 285
Score = 93.6 bits (231), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 134/257 (52%), Gaps = 27/257 (10%)
Query: 480 KLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKI 538
+LK +K++LE A +NT +Y+S LP D T+E E K G++ + D +
Sbjct: 25 QLKESNLQKRELE-YNNASKNTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGEPL-C 82
Query: 539 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF------TMKGE 592
KLY + FKGDAL TY K+ESV LA+ +++ GK+I+VERA+F M G+
Sbjct: 83 KLYVNDKGA-FKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKEGDNMHGK 141
Query: 593 AYDPKLKPKKKRKKDLEKLKKAQE----KLFDWRPDKMRGERSKNESVIIVKNLFD--PA 646
D LK + +++LKKA+ ++ D+ D+ +K + +I N+F+ +
Sbjct: 142 END--LKEFNGPEPPIKRLKKAKSEGEGEVIDYNDDE---SLAKADRTVIFANVFNIYKS 196
Query: 647 LFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
+ D+ I Q+DL E C + G V + + +G A + FK + A C +++ GR
Sbjct: 197 YTNDDINDI---QEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGR 251
Query: 707 WF-GQRQITAETWDGKT 722
+F GQ+ + + D T
Sbjct: 252 YFDGQKLLAFISGDENT 268
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 131/253 (51%), Gaps = 30/253 (11%)
Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
QKR+ E ++ ++T +Y+S LP D T+E E K G++ + D + KLY
Sbjct: 32 QKRELE----YNNASKNTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGEPL-CKLYV 86
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF------TMKGEAYDP 311
+ FKGDAL TY K+ESV LA+ +++ GK+I+VERA+F M G+ D
Sbjct: 87 NDKGA-FKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKEGDNMHGKEND- 144
Query: 312 KLKPKKKRKKDLEKLKKAQE----KLFDWRPDKMRGERSKNESVIIVKNLFD--PALFDK 365
LK + +++LKKA+ ++ D+ D+ +K + +I N+F+ + +
Sbjct: 145 -LKEFNGPEPPIKRLKKAKSEGEGEVIDYNDDE---SLAKADRTVIFANVFNIYKSYTND 200
Query: 366 DVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF-G 424
D+ I Q+DL E C + G V + + +G A + FK + A C +++ GR+F G
Sbjct: 201 DINDI---QEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGRYFDG 255
Query: 425 QRQITAETWDGKT 437
Q+ + + D T
Sbjct: 256 QKLLAFISGDENT 268
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 57/300 (19%)
Query: 440 KIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 499
+++ E A F G +KV R Y+P L + L A
Sbjct: 274 EMRSVEEASNAMALDGVIFEGGPVKVRRPS------DYNPSLAATLGPSQPSPNLNLAAV 327
Query: 500 NT------------KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK-IKLYTDPYT 546
+ +++V LP T+ + E+++ G Q++ L D T
Sbjct: 328 GSTPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFG---------QLRGFDLVKDRET 378
Query: 547 KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKK 606
+ KG A C Y D+A + L+G ++ K + V RA +G +P +++
Sbjct: 379 GNSKGYAFCVYQDVSVTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPNPEQES 430
Query: 607 DLEKLKKAQEKL----FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDL 662
L AQ+++ F +P + + V+ V L D D D ILE D+
Sbjct: 431 ---VLLHAQQQIALQRFMLQPGALATKVLCLTEVVTVDELND----DDDYQDILE---DM 480
Query: 663 REECSKCGHVKKVVLHDKHPEGV-----AQIF--FKEPEAADACRELLNGRWFGQRQITA 715
R EC K G + VV+ +P GV ++F + + + + R+ LNGR FG Q+ A
Sbjct: 481 RTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVA 540
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 39/230 (16%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK-IKLYTDPYTKDFKGDALCT 271
E +++V LP T+ + E+++ G Q++ L D T + KG A C
Sbjct: 338 EGPDRIFVGGLPYYFTESQIRELLESFG---------QLRGFDLVKDRETGNSKGYAFCV 388
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
Y D+A + L+G ++ K + V RA +G +P +++ L AQ+
Sbjct: 389 YQDVSVTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPNPEQES---VLLHAQQ 437
Query: 332 KL----FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV 387
++ F +P + + V+ V L D D D ILE D+R EC K G +
Sbjct: 438 QIALQRFMLQPGALATKVLCLTEVVTVDELND----DDDYQDILE---DMRTECEKFGAL 490
Query: 388 KKVVLHDKHPEGV-----AQIF--FKEPEAADACRELLNGRWFGQRQITA 430
VV+ +P GV ++F + + + + R+ LNGR FG Q+ A
Sbjct: 491 VNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQGLNGRKFGGNQVVA 540
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E +++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 356 EGPDRIFVGGLPYYFTEAQIRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVY 407
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK--AQ 330
D+A + L+G ++ K + V RA +G +PK +++ L ++ A
Sbjct: 408 QDVSVTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPKPEQESVLLHAQQQIAL 459
Query: 331 EKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
++L +P + + VI L D D+D ILE D+R EC K G + V
Sbjct: 460 QRLM-LQPATLATKVLSLTEVISADELND----DEDYQDILE---DMRTECGKFGSLVNV 511
Query: 391 VLHDKHPE-----GVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
V+ P GV ++F + + +++ R+ LNGR FG Q+ A
Sbjct: 512 VIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVA 558
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 33/223 (14%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 360 RIFVGGLPYYFTEAQIRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVYQDVS 411
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK--AQEKLF 619
D+A + L+G ++ K + V RA +G +PK +++ L ++ A ++L
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRAN---QGTT-----QPKPEQESVLLHAQQQIALQRLM 463
Query: 620 DWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD 679
+P + + VI L D D+D ILE D+R EC K G + VV+
Sbjct: 464 -LQPATLATKVLSLTEVISADELND----DEDYQDILE---DMRTECGKFGSLVNVVIPR 515
Query: 680 KHPE-----GVAQIF--FKEPEAADACRELLNGRWFGQRQITA 715
P GV ++F + + +++ R+ LNGR FG Q+ A
Sbjct: 516 PSPNGEPTPGVGKVFLEYADVDSSSKARQSLNGRKFGGNQVVA 558
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 39/230 (16%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E +++V LP T+ + E+++ G + L D T + KG A C Y
Sbjct: 372 EGPDRIFVGGLPYYFTEVQIRELLESFGPLRG--------FNLVKDRETGNSKGYAFCVY 423
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
D+A + L+G ++ K + V RA ++G ++PK +++ E L AQ++
Sbjct: 424 QDPSVTDIACAALNGIKMGDKTLTVRRA---IQG-----AIQPKPEQE---EVLLYAQQQ 472
Query: 333 L----FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK 388
+ ++P + V+ +L D D++ I+E D+R+E K G++
Sbjct: 473 IALQRLMFQPGGTPTKIVCLTQVVTADDLRD----DEEYAEIME---DMRQEGGKFGNLV 525
Query: 389 KVVL------HDKHPEGVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
VV+ HD P GV ++F + + + + R +NGR FG Q+ A
Sbjct: 526 NVVIPRPNPDHDPTP-GVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVA 574
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 39/226 (17%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+++V LP T+ + E+++ G + L D T + KG A C Y
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRG--------FNLVKDRETGNSKGYAFCVYQDPS 427
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL--- 618
D+A + L+G ++ K + V RA ++G ++PK +++ E L AQ+++
Sbjct: 428 VTDIACAALNGIKMGDKTLTVRRA---IQG-----AIQPKPEQE---EVLLYAQQQIALQ 476
Query: 619 -FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 677
++P + V+ +L D D++ I+E D+R+E K G++ VV+
Sbjct: 477 RLMFQPGGTPTKIVCLTQVVTADDLRD----DEEYAEIME---DMRQEGGKFGNLVNVVI 529
Query: 678 ------HDKHPEGVAQIF--FKEPEAADACRELLNGRWFGQRQITA 715
HD P GV ++F + + + + R +NGR FG Q+ A
Sbjct: 530 PRPNPDHDPTP-GVGKVFLEYADVDGSSKARSGMNGRKFGGNQVVA 574
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-------- 393
R R + VII++N+ P D D TL Q++++EECSK G V +V++
Sbjct: 529 RLMRPVDSRVIILRNMVGPE--DVDETL----QEEIQEECSKFGTVSRVIIFNEKQTENE 582
Query: 394 -DKHPEGVAQIFFKEPEAADACR--ELLNGRWFGQRQITAETWD 434
D E + +IF + A+A R E L+GR+FG R++ AE +D
Sbjct: 583 DDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYD 626
Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 17/104 (16%)
Query: 627 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH-------- 678
R R + VII++N+ P D D TL Q++++EECSK G V +V++
Sbjct: 529 RLMRPVDSRVIILRNMVGPE--DVDETL----QEEIQEECSKFGTVSRVIIFNEKQTENE 582
Query: 679 -DKHPEGVAQIFFKEPEAADACR--ELLNGRWFGQRQITAETWD 719
D E + +IF + A+A R E L+GR+FG R++ AE +D
Sbjct: 583 DDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYD 626
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 34/174 (19%)
Query: 423 FGQRQITAETWDGKTR---------YKIQETAEEREARLKKWETFL--GKKIKVERAKFT 471
FG + +WD T+ Y+I E A+ L++ L G+ IKV R
Sbjct: 153 FGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQ---LALEQMNGALMGGRNIKVGR---- 205
Query: 472 MKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDV 531
P P+ ++ D E ++A+ ++YV+++ DL++E+ V + G +
Sbjct: 206 -------PSNMPQAQQVID-EVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPI---- 253
Query: 532 DTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
+ KL KG Y K+++D A++ ++ +++ G+ ++V R+
Sbjct: 254 ----LYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60
PE=2 SV=2
Length = 564
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2
SV=2
Length = 564
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 112/503 (22%), Positives = 187/503 (37%), Gaps = 155/503 (30%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQP 62
Query: 276 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD 335
+ AL ++ I+GK I++ ++ DP L
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQ-------RDPSL---------------------- 93
Query: 336 WRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLH 393
R + +KNL DK + + L + S G++ KVV
Sbjct: 94 ---------RKSGVGNVFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCD 133
Query: 394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453
+ +G A + F+ EAAD E +NG R++
Sbjct: 134 ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV------------------------- 168
Query: 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLT 513
F+G+ K +K+R+ +L KA+E T VY+ N ++
Sbjct: 169 ----FVGR-------------------FKSRKEREAELGA--KAKEFTNVYIKNFGEEVD 203
Query: 514 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573
E E+ + G + +K+ DP K KG +Y K E + A+ ++G
Sbjct: 204 DESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVSYEKHEDANKAVEEMNGK 254
Query: 574 EIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKN 633
EI GK I V RA+ K++ + + K+ E+LK QE++ S+
Sbjct: 255 EISGKIIFVGRAQ---------KKVERQAELKRKFEQLK--QERI------------SRY 291
Query: 634 ESV-IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDKHPEGVAQIFF 690
+ V + +KNL D + D + LR+E S G + KV+L D +G + F
Sbjct: 292 QGVNLYIKNL-DDTIDD----------EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCF 340
Query: 691 KEPEAADACRELLNGRWFGQRQI 713
PE A +NGR G + +
Sbjct: 341 SSPEEATKAVTEMNGRIVGSKPL 363
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 46/218 (21%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E T VY+ N ++ E E+ + G + +K+ DP K KG +Y
Sbjct: 189 EFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVSYE 239
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
K E + A+ ++G EI GK I V RA+ K++ + + K+ E+LK QE++
Sbjct: 240 KHEDANKAVEEMNGKEISGKIIFVGRAQ---------KKVERQAELKRKFEQLK--QERI 288
Query: 334 FDWRPDKMRGERSKNESV-IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKV 390
S+ + V + +KNL D + D + LR+E S G + KV
Sbjct: 289 ------------SRYQGVNLYIKNL-DDTIDD----------EKLRKEFSPFGSITSAKV 325
Query: 391 VLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
+L D +G + F PE A +NGR G + +
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2
SV=1
Length = 530
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYD 519
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYD 519
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 132/342 (38%), Gaps = 96/342 (28%)
Query: 377 LREECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434
L E S G + KV+ D+ +G A + F+ AAD E +NG+
Sbjct: 114 LYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGKL------------ 161
Query: 435 GKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKL 494
LK + F+G+ K +K R+ +L
Sbjct: 162 -----------------LKGCKVFVGR-------------------FKNRKDREAELRS- 184
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
KA E T VY+ N D+ E +V K G + +K+ TD K KG
Sbjct: 185 -KASEFTNVYIKNFGGDMDDERLKDVFSKYG--------KTLSVKVMTDSSGKS-KGFGF 234
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKA 614
++ E+ A+ ++G +I G+ I V RA+ K++ + + K+ E+LK+
Sbjct: 235 VSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ---------KKVERQAELKQMFEQLKR- 284
Query: 615 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK- 673
+++RG + + +KNL D + D + LR E S G +
Sbjct: 285 ---------ERIRGCQGVK---LYIKNL-DDTIDD----------EKLRNEFSSFGSISR 321
Query: 674 -KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
KV+ + +G I F PE A +NGR G + ++
Sbjct: 322 VKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 363
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 46/240 (19%)
Query: 194 KVVPGQ--KRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQM 251
KV G+ RK + E T VY+ N D+ E +V K G +
Sbjct: 166 KVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYG--------KTL 217
Query: 252 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDP 311
+K+ TD K KG ++ E+ A+ ++G +I G+ I V RA+
Sbjct: 218 SVKVMTDSSGKS-KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ---------K 267
Query: 312 KLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 371
K++ + + K+ E+LK+ +++RG + + +KNL D + D
Sbjct: 268 KVERQAELKQMFEQLKR----------ERIRGCQGVK---LYIKNL-DDTIDD------- 306
Query: 372 EYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
+ LR E S G + KV+ + +G I F PE A +NGR G + ++
Sbjct: 307 ---EKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 363
>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2
SV=1
Length = 558
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 456 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 509
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 510 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 547
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 456 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 509
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 510 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 547
>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1
SV=1
Length = 559
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 457 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 510
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 511 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 548
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 55/98 (56%), Gaps = 14/98 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 457 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 510
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 511 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 548
>sp|Q61545|EWS_MOUSE RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2
Length = 655
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 358 DNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 417
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 418 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+++ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 357 SDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 416
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ A+ DG + +G K+KV A+
Sbjct: 417 EDPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
>sp|Q01844|EWS_HUMAN RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1
Length = 656
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 359 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 419 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T
Sbjct: 350 PPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 409
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 410 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 39/231 (16%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E +++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 355 EGPDRIFVGGLPYYFTEAQVRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVY 406
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLK---KA 329
D+A + L+G ++ K + V RA +G + +P+ +++ L ++ +
Sbjct: 407 QDLNVTDIACAALNGIKMGDKTLTVRRAN---QGAS-----QPRPEQESMLLHVQQQAQM 458
Query: 330 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ---QDLREECSKCGH 386
Q+ +F G + V+ + + P D EY+ QD+REE + G+
Sbjct: 459 QKLMFQV------GGGALPTKVVCLTQVVSPDELRDDE----EYEDIVQDMREEGCRYGN 508
Query: 387 VKKVVLHDKHPE-----GVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
+ KVV+ P GV ++F F + E++ + ++GR F Q+ A
Sbjct: 509 LVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVA 559
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 102/227 (44%), Gaps = 39/227 (17%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 359 RIFVGGLPYYFTEAQVRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVYQDLN 410
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLK---KAQEKL 618
D+A + L+G ++ K + V RA +G + +P+ +++ L ++ + Q+ +
Sbjct: 411 VTDIACAALNGIKMGDKTLTVRRAN---QGAS-----QPRPEQESMLLHVQQQAQMQKLM 462
Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ---QDLREECSKCGHVKKV 675
F G + V+ + + P D EY+ QD+REE + G++ KV
Sbjct: 463 FQV------GGGALPTKVVCLTQVVSPDELRDDE----EYEDIVQDMREEGCRYGNLVKV 512
Query: 676 VLHDKHPE-----GVAQIF--FKEPEAADACRELLNGRWFGQRQITA 715
V+ P GV ++F F + E++ + ++GR F Q+ A
Sbjct: 513 VIPRPDPSGAPVAGVGRVFLEFADVESSTKAKNGMHGRKFANNQVVA 559
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 44/225 (19%)
Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
K +R+++LE K E T VY+ N D+ + E+ G N + +K+ D
Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG--------NTLSVKVMMD 225
Query: 544 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 603
T +G Y E A+S ++G E+ G+ I V RA +K
Sbjct: 226 D-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA----------------QK 268
Query: 604 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 663
R + +LK+ E++ R ++ +G + VKNL D D D LR
Sbjct: 269 RIERQGELKRKFEQIKQERINRYQGVN------LYVKNLDDG--IDDD---------RLR 311
Query: 664 EECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
+E S G + KV+ H +G + F PE A +NGR
Sbjct: 312 KEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 83/210 (39%), Gaps = 44/210 (20%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E T VY+ N D+ + E+ G N + +K+ D T +G Y
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFG--------NTLSVKVMMDD-TGRSRGFGFVNYG 239
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
E A+S ++G E+ G+ I V RA+ KR + +LK+ E++
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQ----------------KRIERQGELKRKFEQI 283
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVV 391
R ++ +G + VKNL D D D LR+E S G + KV+
Sbjct: 284 KQERINRYQGVN------LYVKNLDDG--IDDD---------RLRKEFSPYGTITSAKVM 326
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGR 421
H +G + F PE A +NGR
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>sp|P56959|FUS_MOUSE RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1
Length = 518
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 276 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 335
Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
S A+ DG E G IKV A
Sbjct: 336 DPPSAKAAIDWFDGKEFSGNPIKVSFA 362
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++ ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 275 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSF 334
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
S A+ DG E G IKV A
Sbjct: 335 DDPPSAKAAIDWFDGKEFSGNPIKVSFA 362
>sp|P35637|FUS_HUMAN RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1
Length = 526
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 283 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 342
Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
S A+ DG E G IKV A
Sbjct: 343 DPPSAKAAIDWFDGKEFSGNPIKVSFA 369
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
++ ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 283 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 342
Query: 274 KKESVDLALSILDGYEIRGKKIKVERA 300
S A+ DG E G IKV A
Sbjct: 343 DPPSAKAAIDWFDGKEFSGNPIKVSFA 369
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 16/175 (9%)
Query: 167 SADLVQSKVEEKSVDATAPME-NPKAEEKVVPGQKR-KPEPPKWFDIGEE---STKVYVS 221
++ ++ S+ + +DA P + K +E V GQ++ PP G++ T+++V
Sbjct: 18 TSAVIHSENFQTLLDAGLPQKVAEKLDEIYVAGQRKYGGPPPDSVYSGQQPSVGTEIFVG 77
Query: 222 NLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLA 281
+P DL ++E V + +K G + ++L DP T +G A T+ KE+ A
Sbjct: 78 KIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCTKEAAQEA 129
Query: 282 LSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD 335
+ + + +EIR GK I V + + K +++ LE+ K E L D
Sbjct: 130 VKLYNNHEIRSGKHIGV--CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTD 182
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T+++V +P DL ++E V + +K G + ++L DP T +G A T+
Sbjct: 71 GTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCT 122
Query: 560 KESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
KE+ A+ + + +EIR GK I V + + K +++ LE+ K E L
Sbjct: 123 KEAAQEAVKLYNNHEIRSGKHIGV--CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 180
Query: 619 FD 620
D
Sbjct: 181 TD 182
>sp|Q28009|FUS_BOVIN RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2
Length = 513
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 270 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFD 329
Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
S A+ DG E G IKV A
Sbjct: 330 DPPSAKAAIDWFDGKEFSGNPIKVSFA 356
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++ ++V L ++T E + ++ G++ + T Q I LYTD T KG+A ++
Sbjct: 269 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSF 328
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
S A+ DG E G IKV A
Sbjct: 329 DDPPSAKAAIDWFDGKEFSGNPIKVSFA 356
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
T+V+V +P DL ++E V + +K G + ++L DP + +G A T+
Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LRLMMDPLSGQNRGYAFITFCG 215
Query: 275 KESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKD-LEKLKKAQEK 332
KE+ A+ + D YEIR GK + V ++ PK K K++ LE+ K E
Sbjct: 216 KEAAQEAVKLCDSYEIRPGKHLGV---CISVANNRLFVGSIPKNKTKENILEEFSKVTEG 272
Query: 333 LFD 335
L D
Sbjct: 273 LVD 275
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T+V+V +P DL ++E V + +K G + ++L DP + +G A T+
Sbjct: 164 GTEVFVGKIPRDLYEDELVPLFEKAGPIWD--------LRLMMDPLSGQNRGYAFITFCG 215
Query: 560 KESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKD-LEKLKKAQEK 617
KE+ A+ + D YEIR GK + V ++ PK K K++ LE+ K E
Sbjct: 216 KEAAQEAVKLCDSYEIRPGKHLGV---CISVANNRLFVGSIPKNKTKENILEEFSKVTEG 272
Query: 618 LFD 620
L D
Sbjct: 273 LVD 275
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 91/225 (40%), Gaps = 44/225 (19%)
Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
K +R+++LE K E T VY+ N D+ + E+ G N + +K+ D
Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFG--------NTLSVKVMMD 225
Query: 544 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 603
+ +G Y E A+S ++G E+ G+ I V RA +K
Sbjct: 226 DSGRS-RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRA----------------QK 268
Query: 604 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 663
R + +LK+ E++ R ++ +G + VKNL D D D LR
Sbjct: 269 RIERQSELKRKFEQIKQERINRYQGVN------LYVKNLDDG--IDDD---------RLR 311
Query: 664 EECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
+E G + KV+ H +G + F PE A +NGR
Sbjct: 312 KEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 44/210 (20%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E T VY+ N D+ + E+ G N + +K+ D + +G Y
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFG--------NTLSVKVMMDDSGRS-RGFGFVNYG 239
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
E A+S ++G E+ G+ I V RA+ KR + +LK+ E++
Sbjct: 240 NHEEAQKAVSEMNGKEVNGRMIYVGRAQ----------------KRIERQSELKRKFEQI 283
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVV 391
R ++ +G + VKNL D D D LR+E G + KV+
Sbjct: 284 KQERINRYQGVN------LYVKNLDDG--IDDD---------RLRKEFLPYGTITSAKVM 326
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGR 421
H +G + F PE A +NGR
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 44/225 (19%)
Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
K +R+++LE K E T VY+ N D+ + E+ G N + +K+ D
Sbjct: 174 KSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFG--------NTLSVKVMMD 225
Query: 544 PYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 603
+ +G Y E A++ ++G E+ G+ + V RA +K
Sbjct: 226 NSGRS-RGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA----------------QK 268
Query: 604 RKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 663
R + +LK+ E++ R ++ +G + VKNL D D D LR
Sbjct: 269 RIERQGELKRKFEQIKQERINRYQGVN------LYVKNLDDG--IDDD---------RLR 311
Query: 664 EECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
+E S G + KV+ H +G + F PE A +NGR
Sbjct: 312 KEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 40.4 bits (93), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 44/210 (20%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E T VY+ N D+ + E+ G N + +K+ D + +G Y
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFG--------NTLSVKVMMDNSGRS-RGFGFVNYG 239
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
E A++ ++G E+ G+ + V RA+ KR + +LK+ E++
Sbjct: 240 NHEEAQKAVTEMNGKEVNGRMVYVGRAQ----------------KRIERQGELKRKFEQI 283
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVV 391
R ++ +G + VKNL D D D LR+E S G + KV+
Sbjct: 284 KQERINRYQGVN------LYVKNLDDG--IDDD---------RLRKEFSPYGTITSTKVM 326
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGR 421
H +G + F PE A +NGR
Sbjct: 327 TEGGHSKGFGFVCFSSPEEATKAVTEMNGR 356
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 35/224 (15%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+++V LP T+ + E+++ G +K D L D T + KG A C Y
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFG-GLKGFD-------LVKDRETGNSKGYAFCVYQDLS 411
Query: 277 SVDLALSILDGYEIRGKKIKVERA-KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD 335
D+A + L+G ++ K + V RA + TM KP+++ L AQ+++
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRANQGTM-------LQKPEQE-----NVLLHAQQQIAF 459
Query: 336 WRPDKMRGERSKNESVIIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
R M + +V+ + + D D++ I+E D+R+E K G + VV+
Sbjct: 460 QR--VMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIME---DMRQEGGKFGALTNVVIP 514
Query: 394 DKHPE-----GVAQIFFK--EPEAADACRELLNGRWFGQRQITA 430
P G+ ++F K + + + R +NGR FG ++ A
Sbjct: 515 RPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVA 558
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 100/224 (44%), Gaps = 35/224 (15%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+++V LP T+ + E+++ G +K D L D T + KG A C Y
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFG-GLKGFD-------LVKDRETGNSKGYAFCVYQDLS 411
Query: 562 SVDLALSILDGYEIRGKKIKVERA-KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD 620
D+A + L+G ++ K + V RA + TM KP+++ L AQ+++
Sbjct: 412 VTDIACAALNGIKMGDKTLTVRRANQGTM-------LQKPEQE-----NVLLHAQQQIAF 459
Query: 621 WRPDKMRGERSKNESVIIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
R M + +V+ + + D D++ I+E D+R+E K G + VV+
Sbjct: 460 QR--VMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIME---DMRQEGGKFGALTNVVIP 514
Query: 679 DKHPE-----GVAQIFFK--EPEAADACRELLNGRWFGQRQITA 715
P G+ ++F K + + + R +NGR FG ++ A
Sbjct: 515 RPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGNEVVA 558
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 52/236 (22%)
Query: 484 KKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD 543
K +R+++ E +A E T +YV NLP+D+ ++ ++ + G K+ +
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFG-------------KMLSV 220
Query: 544 PYTKDFKGDALC----TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLK 599
+D G + C + K E A+ ++G E+ G+ + RA
Sbjct: 221 KVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA-------------- 266
Query: 600 PKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 659
+KR + +LK+ E++ + D++R + N + VKNL D DK
Sbjct: 267 --QKRVERQNELKRRFEQM---KQDRLRRYQGVN---LYVKNLDDSIDDDK--------- 309
Query: 660 QDLREECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
LR+E S G + KV+ H +G + F PE A +NGR G + +
Sbjct: 310 --LRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
Score = 41.2 bits (95), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 52/221 (23%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC--- 270
E T +YV NLP+D+ ++ ++ + G K+ + +D G + C
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFG-------------KMLSVKVMRDNSGHSRCFGF 235
Query: 271 -TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKA 329
+ K E A+ ++G E+ G+ + RA +KR + +LK+
Sbjct: 236 VNFEKHEEAQKAVVHMNGKEVSGRLLYAGRA----------------QKRVERQNELKRR 279
Query: 330 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV-- 387
E++ + D++R + N + VKNL D DK LR+E S G +
Sbjct: 280 FEQM---KQDRLRRYQGVN---LYVKNLDDSIDDDK-----------LRKEFSPYGVITS 322
Query: 388 KKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
KV+ H +G + F PE A +NGR G + +
Sbjct: 323 AKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 363
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 195 VVPGQKR-KPEPPKWFDIGEE---STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQ 250
V GQ++ PP G++ T+++V +P DL ++E V + +K G +
Sbjct: 137 VTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD------ 190
Query: 251 MKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAY 309
++L DP T +G A T+ KE+ A+ + + +EIR GK I V +
Sbjct: 191 --LRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGV--CISVANNRLF 246
Query: 310 DPKLKPKKKRKKDLEKLKKAQEKLFD 335
+ K +++ LE+ K E L D
Sbjct: 247 VGSIPKSKTKEQILEEFSKVTEGLTD 272
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T+++V +P DL ++E V + +K G + ++L DP T +G A T+
Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCT 212
Query: 560 KESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
KE+ A+ + + +EIR GK I V + + K +++ LE+ K E L
Sbjct: 213 KEAAQEAVKLYNNHEIRSGKHIGV--CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 270
Query: 619 FD 620
D
Sbjct: 271 TD 272
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 195 VVPGQKR-KPEPPKWFDIGEE---STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQ 250
V GQ++ PP G++ T+++V +P DL ++E V + +K G +
Sbjct: 137 VTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWD------ 190
Query: 251 MKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAY 309
++L DP T +G A T+ KE+ A+ + + +EIR GK I V +
Sbjct: 191 --LRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGV--CISVANNRLF 246
Query: 310 DPKLKPKKKRKKDLEKLKKAQEKLFD 335
+ K +++ LE+ K E L D
Sbjct: 247 VGSIPKSKTKEQILEEFSKVTEGLTD 272
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T+++V +P DL ++E V + +K G + ++L DP T +G A T+
Sbjct: 161 GTEIFVGKIPRDLFEDELVPLFEKAGPIWD--------LRLMMDPLTGLNRGYAFVTFCT 212
Query: 560 KESVDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 618
KE+ A+ + + +EIR GK I V + + K +++ LE+ K E L
Sbjct: 213 KEAAQEAVKLYNNHEIRSGKHIGV--CISVANNRLFVGSIPKSKTKEQILEEFSKVTEGL 270
Query: 619 FD 620
D
Sbjct: 271 TD 272
>sp|O43040|CTF1_SCHPO Cleavage and termination factor 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ctf1 PE=1 SV=1
Length = 363
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
V+V N+P D+++++ E+ + G V KL DP T KG C + E+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKT--------FKLVLDPETGSGKGYGFCEFFDSET 60
Query: 278 VDLALSILDGYEIRGKKIKVE 298
+A+ L+ E+ +KI+VE
Sbjct: 61 TAMAVRKLNNSELGPRKIRVE 81
Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
V+V N+P D+++++ E+ + G V KL DP T KG C + E+
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKT--------FKLVLDPETGSGKGYGFCEFFDSET 60
Query: 563 VDLALSILDGYEIRGKKIKVE 583
+A+ L+ E+ +KI+VE
Sbjct: 61 TAMAVRKLNNSELGPRKIRVE 81
>sp|P36629|U2AF2_SCHPO Splicing factor U2AF 59 kDa subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp2 PE=1 SV=1
Length = 517
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 10/109 (9%)
Query: 479 PKLKPK--KKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQM 536
P++ P+ +KR D K K+Y+SNLPL+L +++ VE+++ G D+ + Q+
Sbjct: 286 PQITPEVSQKRSDDYAKNDVLDSKDKIYISNLPLNLGEDQVVELLKPFG----DLLSFQL 341
Query: 537 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
IK D +K F C + ++A+S LDG + G K+ + A
Sbjct: 342 -IKNIADGSSKGF---CFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D+ + K+Y+SNLPL+L +++ VE+++ G D+ + Q+ IK D +K F
Sbjct: 304 DVLDSKDKIYISNLPLNLGEDQVVELLKPFG----DLLSFQL-IKNIADGSSKGF---CF 355
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERA 300
C + ++A+S LDG + G K+ + A
Sbjct: 356 CEFKNPSDAEVAISGLDGKDTYGNKLHAQFA 386
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 483 PKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
PKK+R E++K T +YV N+ LD+T E+F E+ +K G D+ + +
Sbjct: 213 PKKERMSKFEEMKA--NFTNIYVKNIDLDVTDEDFRELFEKHG----DITS----ASIAR 262
Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
D K +G YI+ E+ +A+ L+ E +G+K+ V RA+
Sbjct: 263 DDQGKS-RGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQ 305
Score = 42.4 bits (98), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 9/86 (10%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
T +YV N+ LD+T E+F E+ +K G D+ + + D K +G YI+
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEKHG----DITS----ASIARDDQGKS-RGFGFVNYIRH 279
Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
E+ +A+ L+ E +G+K+ V RA+
Sbjct: 280 EAAAVAVDHLNDIEFKGQKLYVGRAQ 305
>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b
PE=2 SV=2
Length = 516
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH------PEGVAQI 403
+V++++N+ P D D+ + ++ EEC K G V +V+++ + E + +I
Sbjct: 419 TVMVLRNMVGPEDIDDDL------EGEVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKI 472
Query: 404 FFKEPEAADACREL--LNGRWFGQRQITAETWD 434
F + +A + + + LN RWF R++ AE +D
Sbjct: 473 FVEFSDAGEMNKAIQALNNRWFAGRKVVAELYD 505
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH------PEGVAQI 688
+V++++N+ P D D+ + ++ EEC K G V +V+++ + E + +I
Sbjct: 419 TVMVLRNMVGPEDIDDDL------EGEVMEECGKYGAVNRVIIYQERQGEEDDAEIIVKI 472
Query: 689 FFKEPEAADACREL--LNGRWFGQRQITAETWD 719
F + +A + + + LN RWF R++ AE +D
Sbjct: 473 FVEFSDAGEMNKAIQALNNRWFAGRKVVAELYD 505
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTK 502
ET E E ++K L KV +F K +++++ E +A+E T
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTN 192
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VY+ N D+ E E+ K G + +K+ TD K KG ++ + E
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALS--------VKVMTDESGKS-KGFGFVSFERHED 243
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
A+ ++G E+ GK+I V RA+ K +E+ + + K +
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKFEQMK 284
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDK 680
D++ + N + VKNL D + D + LR+E S G + KV++
Sbjct: 285 QDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVMMEGG 330
Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+G + F PE A +NGR + + + + EER+A L
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAHL 378
Score = 40.0 bits (92), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 95/241 (39%), Gaps = 53/241 (21%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E T VY+ N D+ E E+ K G + +K+ TD K KG ++
Sbjct: 189 EFTNVYIKNFGEDMDDERLKELFGKFGPALS--------VKVMTDESGKS-KGFGFVSFE 239
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKL 333
+ E A+ ++G E+ GK+I V RA+ K +E+ + + K
Sbjct: 240 RHEDAQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKF 280
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVV 391
+ D++ + N + VKNL D + D + LR+E S G + KV+
Sbjct: 281 EQMKQDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVM 326
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREAR 451
+ +G + F PE A +NGR + + + + EER+A
Sbjct: 327 MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAH 377
Query: 452 L 452
L
Sbjct: 378 L 378
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 203 PEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK 262
+ W + S VYV +P DLT+ + + V + G + VD N L D T
Sbjct: 23 SDEASWHAKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEI---VDVN-----LIRDKGTG 74
Query: 263 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 318
KG A Y + S LA+ L+G + G+ IKV+ K E D + + + +
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNR 130
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VYV +P DLT+ + + V + G + VD N L D T KG A Y + S
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEI---VDVN-----LIRDKGTGKSKGFAFLAYEDQRS 89
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKK 603
LA+ L+G + G+ IKV+ K E D + + + +
Sbjct: 90 TILAVDNLNGALVLGRTIKVDHCGAYKKHEEEDEETRRQNR 130
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTK 502
ET E E ++K L KV +F K +++++ E +A+E T
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTN 192
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VY+ N D+ E E+ K G + +K+ TD K KG ++ + E
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALS--------VKVMTDESGKS-KGFGFVSFERHED 243
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
A+ ++G E+ GK+I V RA+ K +E+ + + K +
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKFEQMK 284
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDK 680
D++ + N + VKNL D + D + LR+E S G + KV++
Sbjct: 285 QDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVMMEGG 330
Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+G + F PE A +NGR + + + + EER+A L
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAHL 378
Score = 40.0 bits (92), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
+E T VY+ N D+ E E+ K G + +K+ TD K KG +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKELFGKFGPALS--------VKVMTDESGKS-KGFGFVS 237
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
+ + E A+ ++G E+ GK+I V RA+ K +E+ + +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKR 278
Query: 332 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KK 389
K + D++ + N + VKNL D + D + LR+E S G + K
Sbjct: 279 KFEQMKQDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAK 324
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449
V++ +G + F PE A +NGR + + + + EER+
Sbjct: 325 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQ 375
Query: 450 ARL 452
A L
Sbjct: 376 AHL 378
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 30/168 (17%)
Query: 198 GQKRKPEPPKWFDIG--EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 255
GQ++ PP +D E ++++ LP DL ++E + + +K G K+
Sbjct: 36 GQRKYGGPPPGWDTTPPERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KI 82
Query: 256 YTDPYTKDFKGD----ALCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKG 306
Y DF G+ A T+ K+ A+ L+ YEIR ++ V+ + + G
Sbjct: 83 YEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG 142
Query: 307 EAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIV 354
+ KKR++ L ++KK E + D +++KN V
Sbjct: 143 ------IPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 64/151 (42%), Gaps = 28/151 (18%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD----A 553
+ ++++ LP DL ++E + + +K G K+Y DF G+ A
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KIYEMRMMMDFNGNNRGYA 99
Query: 554 LCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKGEAYDPKLKPKKKRKKDL 608
T+ K+ A+ L+ YEIR ++ V+ + + G + KKR++ L
Sbjct: 100 FVTFSNKQEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG------IPKTKKREEIL 153
Query: 609 EKLKKAQEKLFDWRPDKMRGERSKNESVIIV 639
++KK E + D +++KN V
Sbjct: 154 SEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
>sp|Q92804|RBP56_HUMAN TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15
PE=1 SV=1
Length = 592
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 488 KKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK 547
+ D + +N ++V L ++ ++ E ++ G++ + T + I LYTD T
Sbjct: 221 RTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTG 280
Query: 548 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585
KG+A ++ S A+ DG E G IKV A
Sbjct: 281 KPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFA 318
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
++ ++V L ++ ++ E ++ G++ + T + I LYTD T KG+A ++
Sbjct: 232 DNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFD 291
Query: 274 KKESVDLALSILDGYEIRGKKIKVERA 300
S A+ DG E G IKV A
Sbjct: 292 DPPSAKAAIDWFDGKEFHGNIIKVSFA 318
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 22/164 (13%)
Query: 198 GQKRKPEPPKWFDIG--EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 255
GQ++ PP +D E ++++ LP DL ++E + + +K G + + ++L
Sbjct: 36 GQRKYGGPPPGWDSTPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYE--------MRL 87
Query: 256 YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKGEAYD 310
D + + +G A T+ K+ A+ L+ YEIR ++ V+ + + G
Sbjct: 88 MMD-FNGNNRGYAFVTFSNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGG---- 142
Query: 311 PKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIV 354
+ KKR++ L ++KK E + D +++KN V
Sbjct: 143 --IPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
Score = 39.7 bits (91), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 20/147 (13%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ ++++ LP DL ++E + + +K G + + ++L D + + +G A T+
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIGKIYE--------MRLMMD-FNGNNRGYAFVTF 103
Query: 558 IKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLK 612
K+ A+ L+ YEIR ++ V+ + + G + KKR++ L ++K
Sbjct: 104 SNKQEAKNAIKQLNNYEIRTGRLLGVCASVDNCRLFVGG------IPKTKKREEILSEMK 157
Query: 613 KAQEKLFDWRPDKMRGERSKNESVIIV 639
K E + D +++KN V
Sbjct: 158 KVTEGVVDVIVYPSAADKTKNRGFAFV 184
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 29/225 (12%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E +++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 324 EGPDRIFVGGLPYYFTEAQVRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVY 375
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
D+A + L+G ++ K + V RA +G A + +P+++ + + +K
Sbjct: 376 QDLNVTDIACAALNGIKMGDKTLTVRRAN---QGSA---QPRPEQENILLQAQQQVQLQK 429
Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
L ++ + + V+ L D D++ I+E D+R E K G++ KVV+
Sbjct: 430 LV-YQVGALPTKVVCLTQVVTADELKD----DEEYEDIME---DMRLEAGKYGNLVKVVI 481
Query: 393 HDKHP-----EGVAQIF--FKEPEAADACRELLNGRWFGQRQITA 430
HP GV ++F + + + + + ++GR FG + A
Sbjct: 482 PRPHPSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVA 526
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+++V LP T+ + E+++ G ++ D L D T + KG A C Y
Sbjct: 328 RIFVGGLPYYFTEAQVRELLESFG-PLRGFD-------LVKDRETGNSKGYAFCVYQDLN 379
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 621
D+A + L+G ++ K + V RA +G A + +P+++ + + +KL +
Sbjct: 380 VTDIACAALNGIKMGDKTLTVRRAN---QGSA---QPRPEQENILLQAQQQVQLQKLV-Y 432
Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 681
+ + + V+ L D D++ I+E D+R E K G++ KVV+ H
Sbjct: 433 QVGALPTKVVCLTQVVTADELKD----DEEYEDIME---DMRLEAGKYGNLVKVVIPRPH 485
Query: 682 P-----EGVAQIF--FKEPEAADACRELLNGRWFGQRQITA 715
P GV ++F + + + + + ++GR FG + A
Sbjct: 486 PSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVA 526
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 30/168 (17%)
Query: 198 GQKRKPEPPKWFDIG--EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 255
GQ++ PP +D E ++++ LP DL ++E + + +K G K+
Sbjct: 36 GQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KI 82
Query: 256 YTDPYTKDFKGD----ALCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKG 306
Y DF G+ A T+ K A+ L+ YEIR ++ V+ + + G
Sbjct: 83 YEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG 142
Query: 307 EAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIV 354
+ KKR++ L ++KK E + D +++KN V
Sbjct: 143 ------IPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD----A 553
+ ++++ LP DL ++E + + +K G K+Y DF G+ A
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KIYEMRMMMDFNGNNRGYA 99
Query: 554 LCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKGEAYDPKLKPKKKRKKDL 608
T+ K A+ L+ YEIR ++ V+ + + G + KKR++ L
Sbjct: 100 FVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG------IPKTKKREEIL 153
Query: 609 EKLKKAQEKLFDWRPDKMRGERSKNESVIIV 639
++KK E + D +++KN V
Sbjct: 154 SEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 30/168 (17%)
Query: 198 GQKRKPEPPKWFDIG--EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL 255
GQ++ PP +D E ++++ LP DL ++E + + +K G K+
Sbjct: 36 GQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KI 82
Query: 256 YTDPYTKDFKGD----ALCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKG 306
Y DF G+ A T+ K A+ L+ YEIR ++ V+ + + G
Sbjct: 83 YEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG 142
Query: 307 EAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIV 354
+ KKR++ L ++KK E + D +++KN V
Sbjct: 143 ------IPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 28/151 (18%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD----A 553
+ ++++ LP DL ++E + + +K G K+Y DF G+ A
Sbjct: 53 ERGCEIFIGKLPRDLFEDELIPLCEKIG-------------KIYEMRMMMDFNGNNRGYA 99
Query: 554 LCTYIKKESVDLALSILDGYEIRGKKI-----KVERAKFTMKGEAYDPKLKPKKKRKKDL 608
T+ K A+ L+ YEIR ++ V+ + + G + KKR++ L
Sbjct: 100 FVTFSNKLEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGG------IPKTKKREEIL 153
Query: 609 EKLKKAQEKLFDWRPDKMRGERSKNESVIIV 639
++KK E + D +++KN V
Sbjct: 154 SEMKKVTEGVVDVIVYPSAADKTKNRGFAFV 184
>sp|Q27294|CAZ_DROME RNA-binding protein cabeza OS=Drosophila melanogaster GN=caz PE=2
SV=2
Length = 399
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
QE+T ++VS + T+++ G++ KD T + KI LY + T KG+A T
Sbjct: 117 TQEDT-IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATVT 175
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
Y + A+ DG + G IKV A+
Sbjct: 176 YDDTNAAQSAIEWFDGRDFNGNAIKVSLAQ 205
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
I +E T ++VS + T+++ G++ KD T + KI LY + T KG+A
Sbjct: 116 ITQEDT-IFVSGMDPSTTEQDIETHFGAIGIIKKDKRTMKPKIWLYKNKETGASKGEATV 174
Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAK 301
TY + A+ DG + G IKV A+
Sbjct: 175 TYDDTNAAQSAIEWFDGRDFNGNAIKVSLAQ 205
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTK 502
ET E E ++K L KV +F K +++++ E +A+E T
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTN 192
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VY+ N D+ E ++ K G + +K+ TD K KG ++ + E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVSFERHED 243
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
A+ ++G E+ GK+I V RA+ K +E+ + + K +
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKFEQMK 284
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDK 680
D++ + N + VKNL D + D + LR+E S G + KV++
Sbjct: 285 QDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVMMEGG 330
Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+G + F PE A +NGR + + + + EER+A L
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAHL 378
Score = 38.5 bits (88), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
+E T VY+ N D+ E ++ K G + +K+ TD K KG +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVS 237
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
+ + E A+ ++G E+ GK+I V RA+ K +E+ + +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKR 278
Query: 332 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KK 389
K + D++ + N + VKNL D + D + LR+E S G + K
Sbjct: 279 KFEQMKQDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAK 324
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449
V++ +G + F PE A +NGR + + + + EER+
Sbjct: 325 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQ 375
Query: 450 ARL 452
A L
Sbjct: 376 AHL 378
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTK 502
ET E E ++K L KV +F K +++++ E +A+E T
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTN 192
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VY+ N D+ E ++ K G + +K+ TD K KG ++ + E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVSFERHED 243
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
A+ ++G E+ GK+I V RA+ K +E+ + + K +
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKFEQMK 284
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDK 680
D++ + N + VKNL D + D + LR+E S G + KV++
Sbjct: 285 QDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVMMEGG 330
Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+G + F PE A +NGR + + + + EER+A L
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAHL 378
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
+E T VY+ N D+ E ++ K G + +K+ TD K KG +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVS 237
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
+ + E A+ ++G E+ GK+I V RA+ K +E+ + +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKR 278
Query: 332 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KK 389
K + D++ + N + VKNL D + D + LR+E S G + K
Sbjct: 279 KFEQMKQDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAK 324
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449
V++ +G + F PE A +NGR + + + + EER+
Sbjct: 325 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQ 375
Query: 450 ARL 452
A L
Sbjct: 376 AHL 378
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 68/297 (22%), Positives = 117/297 (39%), Gaps = 66/297 (22%)
Query: 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTK 502
ET E E ++K L KV +F K +++++ E +A+E T
Sbjct: 146 ETQEAAERAIEKMNGMLLNDRKVFVGRF-------------KSRKEREAELGARAKEFTN 192
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VY+ N D+ E ++ K G + +K+ TD K KG ++ + E
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVSFERHED 243
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWR 622
A+ ++G E+ GK+I V RA+ K +E+ + + K +
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKRKFEQMK 284
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDK 680
D++ + N + VKNL D + D + LR+E S G + KV++
Sbjct: 285 QDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAKVMMEGG 330
Query: 681 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+G + F PE A +NGR + + + + EER+A L
Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQAHL 378
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
+E T VY+ N D+ E ++ K G + +K+ TD K KG +
Sbjct: 187 AKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS--------VKVMTDESGKS-KGFGFVS 237
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 331
+ + E A+ ++G E+ GK+I V RA+ K +E+ + +
Sbjct: 238 FERHEDAQKAVDEMNGKELNGKQIYVGRAQ-------------------KKVERQTELKR 278
Query: 332 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV--KK 389
K + D++ + N + VKNL D + D + LR+E S G + K
Sbjct: 279 KFEQMKQDRITRYQGVN---LYVKNL-DDGIDD----------ERLRKEFSPFGTITSAK 324
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449
V++ +G + F PE A +NGR + + + + EER+
Sbjct: 325 VMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV---------ALAQRKEERQ 375
Query: 450 ARL 452
A L
Sbjct: 376 AHL 378
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 204 EPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD 263
E W ++S V+V +P DLT+ + + V + G V VD N L D T
Sbjct: 24 EDGSWHAKFKDSAYVFVGGIPYDLTEGDLLAVFAQYGEV---VDVN-----LVRDKGTGK 75
Query: 264 FKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 298
KG A Y + S LA+ L+G ++ G+ ++V+
Sbjct: 76 SKGFAFLAYEDQRSTILAVDNLNGAKVLGRIVRVD 110
Score = 41.6 bits (96), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
V+V +P DLT+ + + V + G V VD N L D T KG A Y + S
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEV---VDVN-----LVRDKGTGKSKGFAFLAYEDQRS 89
Query: 563 VDLALSILDGYEIRGKKIKVE 583
LA+ L+G ++ G+ ++V+
Sbjct: 90 TILAVDNLNGAKVLGRIVRVD 110
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
V+V +P D+ ++E V V ++ G + + +L + ++ + +G A Y KE
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKI--------YEFRLMME-FSGENRGYAFVMYTTKEE 113
Query: 278 VDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 336
LA+ IL+ YEIR GK I V + + + + +KK+++ L+++KK E + D
Sbjct: 114 AQLAIRILNNYEIRPGKFIGVCVSLDNCR--LFIGAIPKEKKKEEILDEMKKVTEGVVDV 171
Query: 337 RPDKMRGERSKNESVIIV 354
+++KN V
Sbjct: 172 IVYPSATDKTKNRGFAFV 189
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
V+V +P D+ ++E V V ++ G + + +L + ++ + +G A Y KE
Sbjct: 63 VFVGKIPRDMYEDELVPVFERAGKI--------YEFRLMME-FSGENRGYAFVMYTTKEE 113
Query: 563 VDLALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW 621
LA+ IL+ YEIR GK I V + + + + +KK+++ L+++KK E + D
Sbjct: 114 AQLAIRILNNYEIRPGKFIGVCVSLDNCR--LFIGAIPKEKKKEEILDEMKKVTEGVVDV 171
Query: 622 RPDKMRGERSKNESVIIV 639
+++KN V
Sbjct: 172 IVYPSATDKTKNRGFAFV 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,649,416
Number of Sequences: 539616
Number of extensions: 13964160
Number of successful extensions: 55121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 518
Number of HSP's that attempted gapping in prelim test: 52419
Number of HSP's gapped (non-prelim): 2773
length of query: 773
length of database: 191,569,459
effective HSP length: 125
effective length of query: 648
effective length of database: 124,117,459
effective search space: 80428113432
effective search space used: 80428113432
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)