Query psy2160
Match_columns 773
No_of_seqs 583 out of 2898
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 17:51:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1548|consensus 100.0 3.3E-61 7.1E-66 488.6 27.0 332 122-462 46-378 (382)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-46 2.7E-51 439.4 42.3 353 216-720 1-363 (562)
3 KOG1548|consensus 100.0 3.4E-45 7.3E-50 372.0 23.8 246 497-745 131-379 (382)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.8E-40 6.1E-45 377.0 40.6 422 215-719 2-478 (481)
5 TIGR01645 half-pint poly-U bin 100.0 2.5E-39 5.5E-44 366.5 34.2 307 214-722 106-604 (612)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.9E-38 1.5E-42 345.2 33.0 307 214-587 2-348 (352)
7 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-37 2.8E-42 355.0 36.2 311 214-721 88-448 (457)
8 KOG0123|consensus 100.0 3.9E-36 8.4E-41 326.8 29.8 339 216-717 2-345 (369)
9 KOG0127|consensus 100.0 1.4E-35 3.1E-40 316.0 31.2 428 215-703 5-516 (678)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-34 2.7E-39 334.9 35.1 199 499-720 294-501 (509)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9E-34 1.9E-38 312.5 32.7 286 349-722 3-350 (352)
12 KOG0117|consensus 100.0 1.1E-33 2.4E-38 296.2 25.9 253 202-588 69-331 (506)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.1E-32 2.3E-37 322.2 32.5 269 214-586 87-362 (562)
14 TIGR01648 hnRNP-R-Q heterogene 100.0 8.4E-33 1.8E-37 313.4 29.5 250 204-588 46-307 (578)
15 KOG0124|consensus 100.0 7.9E-33 1.7E-37 281.7 21.2 306 214-721 112-535 (544)
16 KOG0145|consensus 100.0 2.2E-32 4.9E-37 267.5 22.7 303 212-586 38-356 (360)
17 KOG0147|consensus 100.0 2.8E-32 6.1E-37 293.7 20.2 309 214-718 178-525 (549)
18 TIGR01648 hnRNP-R-Q heterogene 100.0 7.3E-30 1.6E-34 289.5 31.2 282 274-722 18-308 (578)
19 KOG0145|consensus 100.0 9.5E-30 2E-34 249.2 22.8 280 350-717 42-354 (360)
20 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.6E-29 1.7E-33 283.1 30.9 319 214-586 95-478 (481)
21 KOG0110|consensus 100.0 8E-30 1.7E-34 281.3 20.9 396 214-719 226-691 (725)
22 KOG0117|consensus 100.0 9.8E-28 2.1E-32 251.7 29.5 245 346-722 80-332 (506)
23 KOG0148|consensus 100.0 2.3E-28 4.9E-33 241.5 18.4 229 214-587 5-237 (321)
24 KOG0144|consensus 100.0 1.3E-27 2.9E-32 249.4 20.0 308 213-586 32-502 (510)
25 KOG0127|consensus 100.0 5.9E-27 1.3E-31 250.5 24.4 307 349-718 5-375 (678)
26 KOG0148|consensus 99.9 3.8E-26 8.3E-31 225.8 19.0 174 499-717 61-234 (321)
27 KOG0123|consensus 99.9 4.6E-26 9.9E-31 248.1 20.9 276 206-586 69-347 (369)
28 TIGR01659 sex-lethal sex-letha 99.9 2.5E-25 5.4E-30 241.2 21.1 167 214-587 106-274 (346)
29 TIGR01659 sex-lethal sex-letha 99.9 2.8E-24 6.1E-29 233.0 20.9 166 497-721 104-275 (346)
30 KOG0144|consensus 99.9 1.6E-23 3.6E-28 218.9 18.8 161 351-588 36-206 (510)
31 KOG1190|consensus 99.9 1.1E-22 2.3E-27 211.5 23.9 435 214-718 27-488 (492)
32 TIGR01645 half-pint poly-U bin 99.9 2.5E-23 5.4E-28 236.6 21.1 177 498-722 105-285 (612)
33 TIGR01622 SF-CC1 splicing fact 99.9 6E-23 1.3E-27 234.4 24.1 212 214-434 185-446 (457)
34 KOG0110|consensus 99.9 1.2E-23 2.7E-28 232.6 16.1 289 214-587 384-692 (725)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-22 3.8E-27 233.7 22.3 200 214-434 294-500 (509)
36 KOG0120|consensus 99.9 3.4E-22 7.3E-27 219.5 18.3 197 499-720 288-491 (500)
37 KOG4212|consensus 99.9 2.7E-21 5.8E-26 202.0 22.9 244 214-584 43-290 (608)
38 KOG0147|consensus 99.9 9.1E-22 2E-26 212.8 14.2 219 203-434 263-526 (549)
39 KOG0131|consensus 99.8 7.3E-21 1.6E-25 178.8 12.1 166 498-721 7-177 (203)
40 KOG0131|consensus 99.8 3.6E-20 7.8E-25 174.1 11.5 165 214-436 8-177 (203)
41 KOG1456|consensus 99.8 4.8E-16 1E-20 160.3 28.3 406 214-710 30-474 (494)
42 KOG0109|consensus 99.7 4.7E-18 1E-22 170.3 11.3 146 501-719 3-148 (346)
43 KOG0146|consensus 99.7 1.9E-17 4.1E-22 163.7 15.2 83 496-586 281-363 (371)
44 KOG1190|consensus 99.7 4.4E-16 9.5E-21 162.6 21.9 311 214-587 149-490 (492)
45 KOG4211|consensus 99.7 5.2E-16 1.1E-20 166.4 21.1 304 214-584 9-354 (510)
46 KOG0124|consensus 99.7 7.6E-17 1.7E-21 165.3 12.5 171 499-717 112-286 (544)
47 KOG0120|consensus 99.7 2.4E-16 5.1E-21 173.7 14.1 196 214-434 288-490 (500)
48 KOG0109|consensus 99.7 1.6E-16 3.6E-21 159.3 10.8 147 351-588 4-150 (346)
49 KOG0146|consensus 99.6 5E-15 1.1E-19 146.7 13.6 203 499-721 18-365 (371)
50 PLN03134 glycine-rich RNA-bind 99.6 1.6E-14 3.5E-19 137.7 10.8 81 214-302 33-113 (144)
51 KOG4205|consensus 99.5 1.7E-14 3.7E-19 152.2 10.7 171 214-587 5-175 (311)
52 PLN03134 glycine-rich RNA-bind 99.5 3.7E-14 8E-19 135.3 11.6 82 498-587 32-113 (144)
53 KOG4206|consensus 99.5 2E-13 4.4E-18 134.1 15.1 196 499-719 8-220 (221)
54 KOG1365|consensus 99.5 6.7E-13 1.4E-17 137.7 17.8 294 214-586 59-360 (508)
55 KOG4206|consensus 99.5 3.2E-13 6.9E-18 132.8 14.4 194 214-432 8-218 (221)
56 PF00076 RRM_1: RNA recognitio 99.5 2.8E-13 6E-18 112.4 8.9 70 218-296 1-70 (70)
57 KOG0105|consensus 99.4 1.8E-12 3.9E-17 122.4 14.4 171 499-709 5-176 (241)
58 PF00076 RRM_1: RNA recognitio 99.4 5.2E-13 1.1E-17 110.7 9.0 70 503-581 1-70 (70)
59 KOG0105|consensus 99.4 3.7E-12 7.9E-17 120.3 13.8 171 214-424 5-176 (241)
60 KOG0121|consensus 99.4 5.2E-13 1.1E-17 118.9 7.4 78 214-299 35-112 (153)
61 KOG0122|consensus 99.4 9.9E-13 2.1E-17 129.7 9.8 83 497-587 186-268 (270)
62 KOG0122|consensus 99.4 9.6E-13 2.1E-17 129.8 9.3 81 214-302 188-268 (270)
63 KOG4205|consensus 99.4 1.2E-12 2.7E-17 138.3 10.8 169 499-722 5-177 (311)
64 KOG1456|consensus 99.4 1E-10 2.2E-15 121.4 23.0 302 214-577 119-474 (494)
65 KOG0126|consensus 99.4 9.4E-14 2E-18 130.8 -0.0 89 205-301 25-113 (219)
66 PF14259 RRM_6: RNA recognitio 99.4 3E-12 6.5E-17 106.6 8.6 70 218-296 1-70 (70)
67 KOG0126|consensus 99.3 2.5E-13 5.5E-18 127.9 0.5 80 499-586 34-113 (219)
68 PF14259 RRM_6: RNA recognitio 99.3 6.3E-12 1.4E-16 104.7 8.5 70 503-581 1-70 (70)
69 KOG1457|consensus 99.3 3E-11 6.5E-16 117.5 13.9 191 499-708 33-273 (284)
70 PLN03120 nucleic acid binding 99.3 7.8E-12 1.7E-16 127.6 9.9 75 215-301 4-78 (260)
71 KOG1457|consensus 99.3 4.9E-11 1.1E-15 116.0 14.2 82 214-303 33-118 (284)
72 KOG4211|consensus 99.3 3.9E-11 8.4E-16 129.3 14.4 165 499-716 9-177 (510)
73 KOG0106|consensus 99.3 8.2E-12 1.8E-16 124.2 8.4 161 501-716 2-166 (216)
74 KOG0107|consensus 99.3 9.8E-12 2.1E-16 117.0 8.2 76 214-302 9-84 (195)
75 PLN03120 nucleic acid binding 99.3 2.4E-11 5.2E-16 124.0 10.5 76 500-587 4-79 (260)
76 KOG0121|consensus 99.2 1.5E-11 3.3E-16 109.6 7.7 82 497-586 33-114 (153)
77 PLN03213 repressor of silencin 99.2 1.8E-11 3.9E-16 130.6 9.3 78 214-303 9-88 (759)
78 KOG0125|consensus 99.2 1.7E-11 3.6E-16 125.7 8.5 81 497-587 93-173 (376)
79 KOG0149|consensus 99.2 1.2E-11 2.6E-16 121.9 7.2 81 214-303 11-91 (247)
80 KOG1365|consensus 99.2 1.5E-10 3.3E-15 120.4 15.6 280 349-717 60-358 (508)
81 KOG0114|consensus 99.2 3E-11 6.4E-16 103.9 8.3 79 497-586 15-93 (124)
82 PLN03121 nucleic acid binding 99.2 3.8E-11 8.3E-16 120.5 10.2 77 213-301 3-79 (243)
83 KOG0107|consensus 99.2 3E-11 6.5E-16 113.7 8.7 78 498-588 8-85 (195)
84 COG0724 RNA-binding proteins ( 99.2 1.5E-10 3.2E-15 121.6 15.1 169 500-705 115-289 (306)
85 KOG4212|consensus 99.2 1.7E-10 3.8E-15 121.7 14.6 243 346-717 41-290 (608)
86 KOG4207|consensus 99.2 2.8E-11 6.1E-16 116.4 7.1 82 214-303 12-93 (256)
87 PLN03213 repressor of silencin 99.2 1.1E-10 2.3E-15 124.9 11.6 78 498-587 8-87 (759)
88 KOG0149|consensus 99.2 3.4E-11 7.4E-16 118.7 7.2 84 498-590 10-93 (247)
89 smart00362 RRM_2 RNA recogniti 99.2 9.7E-11 2.1E-15 96.5 8.9 71 217-297 1-71 (72)
90 smart00362 RRM_2 RNA recogniti 99.2 1.4E-10 3.1E-15 95.5 9.5 72 502-583 1-72 (72)
91 KOG4207|consensus 99.2 4.5E-11 9.8E-16 115.0 7.0 85 497-589 10-94 (256)
92 KOG0130|consensus 99.2 4.4E-11 9.6E-16 107.5 6.4 81 214-302 71-151 (170)
93 KOG0113|consensus 99.1 1.1E-10 2.4E-15 118.4 9.2 80 214-301 100-179 (335)
94 PF13893 RRM_5: RNA recognitio 99.1 1.9E-10 4.1E-15 91.3 8.8 55 662-717 1-55 (56)
95 PLN03121 nucleic acid binding 99.1 1.8E-10 3.9E-15 115.8 10.5 76 499-586 4-79 (243)
96 smart00360 RRM RNA recognition 99.1 1.7E-10 3.7E-15 94.6 8.5 70 220-297 1-70 (71)
97 KOG0106|consensus 99.1 1.1E-10 2.3E-15 116.4 8.2 165 216-431 2-166 (216)
98 smart00360 RRM RNA recognition 99.1 2.3E-10 4.9E-15 93.8 8.9 71 505-583 1-71 (71)
99 KOG0111|consensus 99.1 3.5E-11 7.5E-16 116.6 4.3 82 214-303 9-90 (298)
100 KOG0114|consensus 99.1 3.1E-10 6.7E-15 97.7 9.6 76 214-300 17-92 (124)
101 KOG0130|consensus 99.1 8.7E-11 1.9E-15 105.7 6.1 83 497-587 69-151 (170)
102 cd00590 RRM RRM (RNA recogniti 99.1 3.9E-10 8.4E-15 93.3 9.6 73 217-298 1-73 (74)
103 COG0724 RNA-binding proteins ( 99.1 2.2E-10 4.7E-15 120.4 9.8 79 215-301 115-193 (306)
104 KOG0125|consensus 99.1 1.9E-10 4E-15 118.1 8.8 79 214-302 95-173 (376)
105 KOG0113|consensus 99.1 2.7E-10 5.9E-15 115.6 9.8 81 498-586 99-179 (335)
106 smart00361 RRM_1 RNA recogniti 99.1 3.7E-10 8.1E-15 94.1 8.3 60 657-716 4-70 (70)
107 KOG0108|consensus 99.1 2E-10 4.3E-15 126.8 8.6 78 216-301 19-96 (435)
108 cd00590 RRM RRM (RNA recogniti 99.1 1.1E-09 2.4E-14 90.5 10.0 74 502-584 1-74 (74)
109 KOG0108|consensus 99.0 3.4E-10 7.4E-15 125.0 8.4 80 501-588 19-98 (435)
110 KOG0111|consensus 99.0 1.6E-10 3.4E-15 112.1 4.1 83 498-588 8-90 (298)
111 smart00361 RRM_1 RNA recogniti 98.9 4.1E-09 8.9E-14 87.8 8.2 62 514-583 2-70 (70)
112 KOG0128|consensus 98.9 2.3E-11 5E-16 138.4 -8.5 333 215-725 479-819 (881)
113 PF13893 RRM_5: RNA recognitio 98.9 7E-09 1.5E-13 82.3 8.0 56 517-585 1-56 (56)
114 KOG1996|consensus 98.9 1.9E-09 4E-14 108.9 5.5 82 633-720 280-366 (378)
115 KOG4307|consensus 98.8 6.3E-09 1.4E-13 115.7 8.8 80 497-584 864-943 (944)
116 KOG4208|consensus 98.8 1.2E-08 2.6E-13 99.1 7.5 81 213-301 47-128 (214)
117 KOG4307|consensus 98.8 1.1E-07 2.3E-12 106.1 15.9 463 211-717 307-943 (944)
118 KOG1995|consensus 98.8 4.5E-09 9.7E-14 110.1 4.7 91 213-303 64-154 (351)
119 KOG4208|consensus 98.7 4.9E-08 1.1E-12 94.9 7.9 84 497-588 46-130 (214)
120 KOG0415|consensus 98.6 5.6E-08 1.2E-12 100.7 7.1 82 497-586 236-317 (479)
121 KOG0415|consensus 98.6 6.4E-08 1.4E-12 100.3 6.8 84 210-301 234-317 (479)
122 KOG0128|consensus 98.6 4.2E-09 9.2E-14 120.3 -2.2 235 216-585 572-812 (881)
123 KOG1995|consensus 98.6 5.5E-08 1.2E-12 102.1 4.8 92 497-588 63-154 (351)
124 KOG4660|consensus 98.5 4.1E-07 8.8E-12 100.3 10.9 70 214-296 74-143 (549)
125 KOG0226|consensus 98.5 2.6E-07 5.6E-12 92.3 7.5 83 211-301 186-268 (290)
126 KOG4661|consensus 98.5 2.8E-07 6.1E-12 100.5 8.3 87 497-591 402-488 (940)
127 KOG0533|consensus 98.4 5.3E-07 1.1E-11 92.2 8.4 81 212-301 80-160 (243)
128 KOG0129|consensus 98.4 2.3E-06 5E-11 93.7 13.1 159 214-417 258-432 (520)
129 KOG4661|consensus 98.4 4.9E-07 1.1E-11 98.7 7.5 82 214-303 404-485 (940)
130 KOG0129|consensus 98.4 5E-06 1.1E-10 91.1 14.0 162 498-702 257-432 (520)
131 KOG0132|consensus 98.3 7.7E-07 1.7E-11 101.0 7.6 74 499-586 420-493 (894)
132 KOG0132|consensus 98.3 8.5E-07 1.8E-11 100.6 7.5 74 214-301 420-493 (894)
133 KOG0153|consensus 98.3 1.7E-06 3.8E-11 90.1 7.8 76 498-587 226-302 (377)
134 KOG4209|consensus 98.3 1E-06 2.2E-11 90.4 5.9 81 214-303 100-180 (231)
135 KOG0533|consensus 98.3 2.5E-06 5.5E-11 87.3 8.7 81 498-587 81-161 (243)
136 KOG4454|consensus 98.3 3.1E-07 6.7E-12 89.7 1.6 150 347-583 7-158 (267)
137 KOG4454|consensus 98.2 2.7E-07 5.8E-12 90.2 0.8 76 214-299 8-83 (267)
138 KOG0226|consensus 98.2 2.2E-06 4.7E-11 85.8 6.2 132 396-587 138-269 (290)
139 KOG0153|consensus 98.2 5E-06 1.1E-10 86.8 8.0 76 213-302 226-302 (377)
140 KOG1996|consensus 98.1 2.8E-06 6.1E-11 86.3 5.5 80 349-434 281-365 (378)
141 PF04059 RRM_2: RNA recognitio 98.1 1.7E-05 3.7E-10 69.8 9.2 82 501-588 2-87 (97)
142 KOG0116|consensus 98.1 7E-06 1.5E-10 90.6 7.8 81 214-303 287-367 (419)
143 KOG4209|consensus 98.1 4.4E-06 9.6E-11 85.7 5.8 82 497-587 98-179 (231)
144 KOG4210|consensus 98.0 4.2E-06 9.1E-11 88.8 4.8 173 348-588 87-264 (285)
145 KOG0151|consensus 98.0 1.2E-05 2.7E-10 90.5 7.3 86 208-301 167-255 (877)
146 KOG0116|consensus 98.0 1.5E-05 3.2E-10 88.1 7.5 81 499-588 287-367 (419)
147 PF04059 RRM_2: RNA recognitio 98.0 4.7E-05 1E-09 67.0 9.0 80 216-303 2-87 (97)
148 PF11608 Limkain-b1: Limkain b 97.9 5E-05 1.1E-09 63.7 8.5 72 635-719 3-75 (90)
149 KOG0151|consensus 97.9 1.4E-05 3.1E-10 90.0 6.8 81 498-586 172-255 (877)
150 KOG0112|consensus 97.9 6.8E-06 1.5E-10 95.0 4.4 164 496-723 368-533 (975)
151 KOG2202|consensus 97.9 5.2E-06 1.1E-10 83.7 2.8 63 655-717 78-144 (260)
152 KOG0112|consensus 97.9 1.1E-05 2.4E-10 93.3 4.3 159 214-436 371-531 (975)
153 KOG4676|consensus 97.8 2.7E-06 5.8E-11 89.7 -0.8 74 216-298 8-84 (479)
154 KOG4210|consensus 97.7 3.2E-05 6.9E-10 82.1 4.9 174 499-721 87-264 (285)
155 PF11608 Limkain-b1: Limkain b 97.7 0.00016 3.4E-09 60.8 7.6 70 500-586 2-75 (90)
156 KOG4660|consensus 97.7 2.8E-05 6.1E-10 86.1 3.7 71 498-581 73-143 (549)
157 KOG2193|consensus 97.3 5.1E-05 1.1E-09 80.8 -0.1 151 501-718 2-154 (584)
158 KOG2202|consensus 97.3 8.6E-05 1.9E-09 75.1 1.4 62 372-433 80-145 (260)
159 KOG4676|consensus 97.1 0.0012 2.6E-08 70.2 7.5 188 500-709 7-214 (479)
160 KOG2314|consensus 97.1 0.0014 3E-08 72.7 8.1 109 634-747 58-175 (698)
161 PF08777 RRM_3: RNA binding mo 97.0 0.0013 2.7E-08 59.3 5.9 70 635-717 2-76 (105)
162 COG5175 MOT2 Transcriptional r 97.0 0.0023 5E-08 66.7 8.0 60 663-724 138-204 (480)
163 KOG2193|consensus 96.9 0.00013 2.9E-09 77.8 -1.3 152 216-434 2-155 (584)
164 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0059 1.3E-07 54.3 8.3 68 635-717 7-88 (100)
165 PF08777 RRM_3: RNA binding mo 96.8 0.0016 3.6E-08 58.6 4.5 69 216-298 2-75 (105)
166 KOG2314|consensus 96.7 0.0045 9.7E-08 68.8 7.7 77 214-299 57-140 (698)
167 COG5175 MOT2 Transcriptional r 96.6 0.003 6.4E-08 65.9 5.8 80 214-301 113-201 (480)
168 PF14605 Nup35_RRM_2: Nup53/35 96.5 0.0046 9.9E-08 48.3 4.5 53 215-282 1-53 (53)
169 KOG0115|consensus 96.4 0.0075 1.6E-07 61.2 7.0 77 501-586 32-112 (275)
170 KOG3152|consensus 96.4 0.0021 4.6E-08 65.0 3.0 72 499-578 73-156 (278)
171 PF08952 DUF1866: Domain of un 96.2 0.037 8E-07 52.2 9.8 79 632-717 25-103 (146)
172 KOG3152|consensus 96.2 0.004 8.6E-08 63.1 3.5 73 214-294 73-157 (278)
173 PF14605 Nup35_RRM_2: Nup53/35 96.0 0.019 4.2E-07 44.8 5.9 40 659-700 14-53 (53)
174 PF05172 Nup35_RRM: Nup53/35/4 96.0 0.025 5.3E-07 50.3 7.3 77 214-300 5-89 (100)
175 KOG4849|consensus 95.9 0.0084 1.8E-07 62.9 4.3 76 214-297 79-156 (498)
176 KOG4849|consensus 95.9 0.012 2.6E-07 61.8 5.3 81 500-586 80-160 (498)
177 KOG0115|consensus 95.2 0.021 4.6E-07 58.1 4.4 66 216-290 32-97 (275)
178 KOG1855|consensus 95.2 0.021 4.5E-07 61.9 4.5 67 214-288 230-309 (484)
179 PF08952 DUF1866: Domain of un 95.0 0.15 3.1E-06 48.3 9.0 78 349-433 27-104 (146)
180 PF15023 DUF4523: Protein of u 94.9 0.09 1.9E-06 48.9 7.2 54 660-717 105-158 (166)
181 KOG1855|consensus 94.6 0.024 5.3E-07 61.4 3.0 70 498-575 229-311 (484)
182 PF08675 RNA_bind: RNA binding 94.5 0.086 1.9E-06 44.7 5.5 56 500-572 9-64 (87)
183 KOG2416|consensus 94.3 0.046 1E-06 61.5 4.6 77 628-717 438-518 (718)
184 PF04847 Calcipressin: Calcipr 94.3 0.098 2.1E-06 52.0 6.5 61 657-719 7-69 (184)
185 PF10309 DUF2414: Protein of u 94.3 0.22 4.8E-06 40.0 7.1 55 499-570 4-62 (62)
186 PF08675 RNA_bind: RNA binding 94.2 0.085 1.8E-06 44.7 4.9 60 212-287 5-64 (87)
187 PF10309 DUF2414: Protein of u 93.8 0.28 6.1E-06 39.4 6.9 55 214-285 4-62 (62)
188 KOG2416|consensus 92.9 0.087 1.9E-06 59.3 3.6 76 497-586 441-520 (718)
189 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.22 4.8E-06 49.2 5.1 81 214-302 6-97 (176)
190 KOG4285|consensus 91.9 0.46 9.9E-06 49.6 7.1 52 660-714 211-262 (350)
191 PF15023 DUF4523: Protein of u 91.9 0.63 1.4E-05 43.5 7.2 74 497-586 83-160 (166)
192 PF03467 Smg4_UPF3: Smg-4/UPF3 91.6 0.27 5.8E-06 48.7 5.0 86 498-588 5-98 (176)
193 KOG2068|consensus 86.2 0.27 5.9E-06 52.3 0.7 79 214-301 76-161 (327)
194 KOG4285|consensus 85.4 1.4 3.1E-05 46.0 5.3 51 375-428 211-261 (350)
195 KOG2253|consensus 85.3 0.55 1.2E-05 54.1 2.5 72 211-299 36-107 (668)
196 PF11767 SET_assoc: Histone ly 85.3 4.5 9.7E-05 33.1 7.1 55 226-297 11-65 (66)
197 KOG2068|consensus 85.1 0.34 7.5E-06 51.5 0.8 79 500-586 77-161 (327)
198 KOG4574|consensus 84.9 0.61 1.3E-05 55.0 2.7 72 502-587 300-373 (1007)
199 PF04847 Calcipressin: Calcipr 84.9 2.8 6.2E-05 41.7 7.1 61 513-587 8-70 (184)
200 KOG4574|consensus 83.7 0.89 1.9E-05 53.6 3.3 72 217-302 300-373 (1007)
201 PF03880 DbpA: DbpA RNA bindin 83.2 4.4 9.5E-05 33.9 6.6 64 510-585 11-74 (74)
202 KOG0804|consensus 82.5 5 0.00011 44.5 8.2 82 498-588 72-159 (493)
203 KOG2591|consensus 82.2 2 4.4E-05 48.5 5.2 68 499-581 174-245 (684)
204 PF07576 BRAP2: BRCA1-associat 81.5 8.3 0.00018 35.0 8.1 68 501-577 13-81 (110)
205 KOG2253|consensus 79.3 1.2 2.6E-05 51.4 2.4 72 497-585 37-108 (668)
206 KOG2135|consensus 78.8 1.3 2.8E-05 49.1 2.4 74 499-587 371-445 (526)
207 PF07576 BRAP2: BRCA1-associat 78.1 28 0.00061 31.6 10.3 70 214-292 11-81 (110)
208 KOG0804|consensus 76.7 12 0.00026 41.7 8.8 80 214-302 73-158 (493)
209 PF11767 SET_assoc: Histone ly 75.5 14 0.0003 30.3 6.9 55 511-582 11-65 (66)
210 KOG2135|consensus 74.3 2.1 4.5E-05 47.6 2.3 74 214-302 371-445 (526)
211 KOG2591|consensus 71.0 7.2 0.00016 44.3 5.6 69 214-297 174-246 (684)
212 PF03880 DbpA: DbpA RNA bindin 64.8 27 0.00058 29.1 6.7 42 671-717 32-73 (74)
213 PF15519 RBM39linker: linker b 60.4 6.1 0.00013 33.1 1.9 16 632-647 52-67 (73)
214 PF14237 DUF4339: Domain of un 58.2 5.2 0.00011 29.9 1.1 18 52-69 28-45 (45)
215 PF08265 YL1_C: YL1 nuclear pr 58.0 4.4 9.5E-05 27.7 0.6 16 9-24 6-21 (30)
216 PF14111 DUF4283: Domain of un 56.6 21 0.00047 33.8 5.4 99 373-528 34-133 (153)
217 KOG2318|consensus 56.6 31 0.00066 39.7 7.1 82 497-586 171-306 (650)
218 KOG4019|consensus 53.1 15 0.00033 36.0 3.6 60 659-720 29-89 (193)
219 PF03468 XS: XS domain; Inter 46.0 15 0.00032 33.7 2.2 61 634-696 8-69 (116)
220 PF07292 NID: Nmi/IFP 35 domai 41.7 66 0.0014 28.0 5.4 26 497-522 49-74 (88)
221 PF03468 XS: XS domain; Inter 38.2 30 0.00066 31.7 3.0 51 502-563 10-69 (116)
222 COG5470 Uncharacterized conser 37.3 97 0.0021 27.2 5.6 52 650-701 13-71 (96)
223 KOG4410|consensus 35.5 49 0.0011 34.7 4.2 50 214-276 329-378 (396)
224 KOG2318|consensus 35.2 99 0.0021 35.8 6.9 78 214-299 173-304 (650)
225 KOG2891|consensus 35.2 13 0.00029 38.4 0.1 71 497-575 146-247 (445)
226 cd04908 ACT_Bt0572_1 N-termina 35.0 2.3E+02 0.005 22.5 8.2 46 660-706 16-62 (66)
227 PF08734 GYD: GYD domain; Int 33.3 1.6E+02 0.0034 25.7 6.6 47 659-705 22-69 (91)
228 PF12930 DUF3836: Family of un 32.9 36 0.00079 32.0 2.7 42 20-67 76-119 (132)
229 PF07292 NID: Nmi/IFP 35 domai 31.2 1.1E+02 0.0025 26.5 5.2 32 553-585 1-34 (88)
230 KOG4483|consensus 30.6 96 0.0021 34.2 5.6 56 215-284 391-446 (528)
231 PF15513 DUF4651: Domain of un 29.4 1E+02 0.0023 24.9 4.2 24 656-679 5-28 (62)
232 KOG4483|consensus 27.8 1.3E+02 0.0028 33.3 5.9 58 498-569 389-446 (528)
233 KOG4019|consensus 27.4 57 0.0012 32.1 3.0 79 499-591 9-93 (193)
234 KOG4410|consensus 27.3 83 0.0018 33.1 4.3 50 499-561 329-378 (396)
235 KOG2295|consensus 25.6 11 0.00024 42.8 -2.4 73 214-294 230-302 (648)
236 PF13820 Nucleic_acid_bd: Puta 25.0 1.8E+02 0.0038 28.0 5.8 52 652-705 16-67 (149)
237 KOG2295|consensus 24.8 13 0.00027 42.5 -2.2 72 499-578 230-301 (648)
238 PF10567 Nab6_mRNP_bdg: RNA-re 22.0 96 0.0021 32.9 3.7 179 496-704 11-212 (309)
239 PF08796 DUF1797: Protein of u 21.7 77 0.0017 26.0 2.3 25 106-130 30-54 (67)
240 COG5195 Uncharacterized conser 21.0 50 0.0011 29.1 1.1 23 3-25 66-88 (118)
No 1
>KOG1548|consensus
Probab=100.00 E-value=3.3e-61 Score=488.58 Aligned_cols=332 Identities=48% Similarity=0.859 Sum_probs=288.1
Q ss_pred CCCcEEEEeCcCCceecccChHHHHHHHhhcCcccCCCCCCCCCCchhhhhhhhhccccCCCCCCCCCccccccCCCCCC
Q psy2160 122 TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKR 201 (773)
Q Consensus 122 ~dg~~~~~d~~~~~w~p~~~~~~~~~~q~~y~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~k~~~~~~~~~ 201 (773)
.++..|+||.++++|||+|+++||+.||++|||+. +.+.+.+........+++++.... +.++.+.+...+.++
T Consensus 46 ~~~edy~wd~~k~~W~pki~~df~a~yq~nyg~~~-d~s~~~~e~~e~~~a~~~~e~e~~-----k~~~r~~~~~~~~kk 119 (382)
T KOG1548|consen 46 SETEDYIWDDEKKAWVPKIPEDFIAEYQANYGFED-DTSADATELEEDGHAKKKKEDELL-----KNPKRKYKVGKGEKK 119 (382)
T ss_pred CccccceeehhhccccCCCchhHHHhhhcccCccc-cccccchhhhhhhhhhhcccchhh-----hcccccccCcccccc
Confidence 34444999999999999999999999999999994 332333222211112222111110 112222334456677
Q ss_pred CCCCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHH
Q psy2160 202 KPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL 280 (773)
Q Consensus 202 ~~~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~ 280 (773)
.+.++.|+.+.| .|++|||+|||.++|.+++.++|++||.|+.||+||+|+|+||++.+ |+.+|.|+|+|.+.+|+.+
T Consensus 120 ~~~e~~~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeL 198 (382)
T KOG1548|consen 120 QKEEGEWFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVEL 198 (382)
T ss_pred ccCCCcccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHH
Confidence 777888999999 99999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHcCCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCc
Q psy2160 281 ALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDP 360 (773)
Q Consensus 281 Al~~lng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p 360 (773)
|+++||+..|+|+.|+|++|+|++++. ++++.+. +.+++.+++++++++++++|.|+.....+.+..++|+|+|||+|
T Consensus 199 A~~ilDe~~~rg~~~rVerAkfq~Kge-~~~~~k~-k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp 276 (382)
T KOG1548|consen 199 AIKILDEDELRGKKLRVERAKFQMKGE-YDASKKE-KGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTP 276 (382)
T ss_pred HHHHhCcccccCcEEEEehhhhhhccC-cCccccc-ccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCH
Confidence 999999999999999999999999999 9998876 55677888999999999999999988888999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccc
Q psy2160 361 ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440 (773)
Q Consensus 361 ~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~ 440 (773)
..+..+|.++++|+++|++.|.+||.|.+|+++++||.|++.|.|.+.+.|..||+.|+||+|+||+|.+++|+|+++|+
T Consensus 277 ~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~ 356 (382)
T KOG1548|consen 277 EDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQ 356 (382)
T ss_pred HHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhhh
Q psy2160 441 IQETAEEREARLKKWETFLGKK 462 (773)
Q Consensus 441 ~~~~~~e~~~r~~~~~~~l~~~ 462 (773)
++++.++...|+..|..|+...
T Consensus 357 ~eet~~D~e~e~~~~e~f~~~~ 378 (382)
T KOG1548|consen 357 TEETNEDEEEELKRLEKFAAEL 378 (382)
T ss_pred eecccchHHHHHHHHHHHHhhh
Confidence 9988777777777777776543
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.2e-46 Score=439.40 Aligned_cols=353 Identities=23% Similarity=0.367 Sum_probs=287.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
++|||+|||.++|+++|+++|++||.|.+ |+|++|..|++++|||||+|.+.++|.+||..||+..|.|++|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~--------v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i 72 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLS--------VRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPI 72 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeE
Confidence 47999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160 296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 375 (773)
Q Consensus 296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e 375 (773)
+|.++. .+++.+ .....+|||+|| +..+++ +
T Consensus 73 ~i~~s~-------~~~~~~-------------------------------~~~~~~vfV~nL--p~~~~~---------~ 103 (562)
T TIGR01628 73 RIMWSQ-------RDPSLR-------------------------------RSGVGNIFVKNL--DKSVDN---------K 103 (562)
T ss_pred Eeeccc-------cccccc-------------------------------ccCCCceEEcCC--CccCCH---------H
Confidence 997754 222221 122457999999 444443 8
Q ss_pred HHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHH
Q psy2160 376 DLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 452 (773)
Q Consensus 376 dL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~ 452 (773)
+|+++|++||.|..|.+.. +.++|+|||+|.+.++|.+|+..+||..+.|+.|.+..+..+...
T Consensus 104 ~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~------------- 170 (562)
T TIGR01628 104 ALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER------------- 170 (562)
T ss_pred HHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc-------------
Confidence 8999999999999987753 357899999999999999999999999999999998654322100
Q ss_pred HHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccC
Q psy2160 453 KKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD 532 (773)
Q Consensus 453 ~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~ 532 (773)
. .......++|||+|||.++|+++|+++|+.||.|.
T Consensus 171 -----------------------------------~-----~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~---- 206 (562)
T TIGR01628 171 -----------------------------------E-----AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEIT---- 206 (562)
T ss_pred -----------------------------------c-----cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEE----
Confidence 0 00123467899999999999999999999999998
Q ss_pred CCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----CeEEEEEEccccccCCcCCCCCCchhhhHHHH
Q psy2160 533 TNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR----GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDL 608 (773)
Q Consensus 533 ~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~----g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~ 608 (773)
++.++.+.. |.++|||||.|.+.++|.+|++.|||..|. |+.|.|.++.... .+...+
T Consensus 207 ----~~~i~~~~~-g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~-------------er~~~~ 268 (562)
T TIGR01628 207 ----SAAVMKDGS-GRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRA-------------EREAEL 268 (562)
T ss_pred ----EEEEEECCC-CCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChh-------------hhHHHH
Confidence 799999864 889999999999999999999999999999 9999999887321 111111
Q ss_pred HHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC---CCCCcE
Q psy2160 609 EKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGV 685 (773)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~ 685 (773)
. .......... .......+|+|+||+.. +++ ++|+++|++||.|++|.|.. +.++|+
T Consensus 269 ~---~~~~~~~~~~------~~~~~~~~l~V~nl~~~--~~~---------~~L~~~F~~~G~i~~~~i~~d~~g~~~g~ 328 (562)
T TIGR01628 269 R---RKFEELQQER------KMKAQGVNLYVKNLDDT--VTD---------EKLRELFSECGEITSAKVMLDEKGVSRGF 328 (562)
T ss_pred H---hhHHhhhhhh------hcccCCCEEEEeCCCCc--cCH---------HHHHHHHHhcCCeEEEEEEECCCCCcCCe
Confidence 1 1111110000 01123578999999765 443 89999999999999997753 567899
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160 686 AQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 720 (773)
Q Consensus 686 afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg 720 (773)
|||+|.++++|.+|+..|||+.|+||.|.|.+...
T Consensus 329 gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 329 GFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 99999999999999999999999999999998653
No 3
>KOG1548|consensus
Probab=100.00 E-value=3.4e-45 Score=371.99 Aligned_cols=246 Identities=51% Similarity=0.902 Sum_probs=221.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++.|||+|||.++|.+++.++|++||.|..+++|++|.|+||++.+ |..+|.|+|+|...+++.+|+.+|++..|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 4568899999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
|+.|+|+.|+|++++.. ++..+. +.+....++++.++.++.+|.++..........++|+|+|||+|.++..+|.+++
T Consensus 210 g~~~rVerAkfq~Kge~-~~~~k~-k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEY-DASKKE-KGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred CcEEEEehhhhhhccCc-Cccccc-ccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 99999999999998873 333222 2234556778888999999999987777788899999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccccccccHHHHHHH
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREAR 736 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~~~~~~~e~~~~R 736 (773)
+|+++|+++|++||.|.+|+|++.+|.|++.|.|.+.++|..||+.|+||+|+||+|+++.|||+++|++.++.++++.|
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~~~eet~~D~e~e 367 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKFQTEETNEDEEEE 367 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcceeeeecccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998775555555
Q ss_pred ---HHHHHHHHh
Q psy2160 737 ---LKKWETFLE 745 (773)
Q Consensus 737 ---l~~~~~~le 745 (773)
+++|..|||
T Consensus 368 ~~~~e~f~~~~e 379 (382)
T KOG1548|consen 368 LKRLEKFAAELE 379 (382)
T ss_pred HHHHHHHHhhhh
Confidence 555555554
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.8e-40 Score=377.05 Aligned_cols=422 Identities=18% Similarity=0.215 Sum_probs=276.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHH--cCCceecC
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI--LDGYEIRG 292 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~--lng~~l~g 292 (773)
+..|||+|||.++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||+. +++..|.|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~--------v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g 67 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSY--------VMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRG 67 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcC
Confidence 478999999999999999999999999998 888853 57999999999999999986 47889999
Q ss_pred eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160 293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 372 (773)
Q Consensus 293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~e 372 (773)
++|+|+++....... ... .+ ........-..|+|.||..+ +++
T Consensus 68 ~~l~v~~s~~~~~~~--~~~-------------------------~~-~~~~~~~~~~~v~v~nl~~~--vt~------- 110 (481)
T TIGR01649 68 QPAFFNYSTSQEIKR--DGN-------------------------SD-FDSAGPNKVLRVIVENPMYP--ITL------- 110 (481)
T ss_pred eEEEEEecCCccccc--CCC-------------------------Cc-ccCCCCCceEEEEEcCCCCC--CCH-------
Confidence 999999886321000 000 00 00001122346899999433 332
Q ss_pred HHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcc-----------c
Q psy2160 373 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTR-----------Y 439 (773)
Q Consensus 373 i~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~-----------~ 439 (773)
++|+++|++||.|.+|.++.....++|||+|.+.++|.+|+..|||..+.| +.|.+.+.....- |
T Consensus 111 --~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dy 188 (481)
T TIGR01649 111 --DVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDY 188 (481)
T ss_pred --HHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCC
Confidence 789999999999999988766556899999999999999999999999854 5788877543221 1
Q ss_pred ccchhHHHHHHHHH-----HHHHHhhhhh-hhhhhhcccC-C--------CCCCCCCCchHHhh------hhH----h--
Q psy2160 440 KIQETAEEREARLK-----KWETFLGKKI-KVERAKFTMK-G--------EAYDPKLKPKKKRK------KDL----E-- 492 (773)
Q Consensus 440 ~~~~~~~e~~~r~~-----~~~~~l~~~~-~~~~~~~~~~-G--------~~~~p~~~~~~~r~------~~~----~-- 492 (773)
..+....+...-+. .+........ ......+... | ...+|.. ++..+. ... .
T Consensus 189 t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 267 (481)
T TIGR01649 189 TNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPH-GPPSRYRPAYEAAPLAPAISSY 267 (481)
T ss_pred cCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcc-cCCCCCcccccccccCcccccc
Confidence 11000000000000 0000000000 0000000000 0 0000000 000000 000 0
Q ss_pred hhhcCCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 493 KLKKAQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 493 ~~~~~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
......++++|||+|||. .+|+++|+++|+.||.|. +|+|+++. +|+|||+|.+.++|..||..||
T Consensus 268 ~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~--------~vki~~~~-----~g~afV~f~~~~~A~~Ai~~ln 334 (481)
T TIGR01649 268 GPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVE--------RVKFMKNK-----KETALIEMADPYQAQLALTHLN 334 (481)
T ss_pred CCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhC
Confidence 001123568999999998 699999999999999999 89999873 6999999999999999999999
Q ss_pred CceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcc--ccCCCCCCCcEEEEecCCCccccc
Q psy2160 572 GYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK--MRGERSKNESVIIVKNLFDPALFD 649 (773)
Q Consensus 572 g~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~ikNl~~~~~~~ 649 (773)
|..|.|++|+|.+++................... ... ............ .......++++|+|+||+.. ++
T Consensus 335 g~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~---~d~--~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~--~t 407 (481)
T TIGR01649 335 GVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSY---KDY--SSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLS--VS 407 (481)
T ss_pred CCEECCceEEEEEcccccccCCCCCcCcCCCccc---ccc--cCCccccCCCcccccccccCCCCcEEEEecCCCC--CC
Confidence 9999999999999874321000000000000000 000 000000000000 00011245789999999765 44
Q ss_pred cchhhHHHHHHHHHHHHhcCCc--eeEEEecCC--CCCcEEEEEecCHHHHHHHHHHhCCceeCCeE------EEEEEec
Q psy2160 650 KDVTLILEYQQDLREECSKCGH--VKKVVLHDK--HPEGVAQIFFKEPEAADACRELLNGRWFGQRQ------ITAETWD 719 (773)
Q Consensus 650 ~d~~~~~~l~edl~~~f~~fG~--V~~v~i~~~--~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~------l~v~~~d 719 (773)
+ ++|+++|+.||. |.+|.+++. ...|+|||+|.+.++|..|+..|||..++|+. |+|+|..
T Consensus 408 e---------e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 408 E---------EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred H---------HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 3 899999999998 888888652 34699999999999999999999999999995 9998853
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.5e-39 Score=366.46 Aligned_cols=307 Identities=25% Similarity=0.425 Sum_probs=235.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++++++|+++|++||.|.+ |+|++|+.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~s--------V~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 177 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEE--------EEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc
Confidence 5689999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|+|.++. ++......
T Consensus 178 ~IkV~rp~------------------------------------------------------~~p~a~~~---------- 193 (612)
T TIGR01645 178 NIKVGRPS------------------------------------------------------NMPQAQPI---------- 193 (612)
T ss_pred eeeecccc------------------------------------------------------cccccccc----------
Confidence 99994321 00000000
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
. ..+.
T Consensus 194 -------------------~----------------------~~~~---------------------------------- 198 (612)
T TIGR01645 194 -------------------I----------------------DMVQ---------------------------------- 198 (612)
T ss_pred -------------------c----------------------cccc----------------------------------
Confidence 0 0000
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
......++|||+|||+++++++|+++|+.||.|.
T Consensus 199 -----------------------------------------~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~----- 232 (612)
T TIGR01645 199 -----------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV----- 232 (612)
T ss_pred -----------------------------------------ccccccceEEeecCCCCCCHHHHHHHHhhcCCee-----
Confidence 0001246899999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccC----------------------
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKG---------------------- 591 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~---------------------- 591 (773)
+|+|.+|+.+|.++|||||.|.+.++|..||..|||..|+|+.|+|.++......
T Consensus 233 ---svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~~~pa~~~~~p~aaa~Aaaaa~ 309 (612)
T TIGR01645 233 ---KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAAT 309 (612)
T ss_pred ---EEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCccccCCCCCCCCCchHHHHHHHHhh
Confidence 8999999999999999999999999999999999999999999999987631000
Q ss_pred ---------------C-----------------------------------------------cC------CC---C---
Q psy2160 592 ---------------E-----------------------------------------------AY------DP---K--- 597 (773)
Q Consensus 592 ---------------~-----------------------------------------------~~------~~---~--- 597 (773)
. .+ .+ .
T Consensus 310 a~~~a~~~~~~~a~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (612)
T TIGR01645 310 AKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPS 389 (612)
T ss_pred hhhhhhhhhhcccccccccCCCccccccccccccccccccccCCcccCCCCCccccccccCCCCcccccCCCCccccccc
Confidence 0 00 00 0
Q ss_pred ------C-Cc---------hh----------------------------------------------------hhHHHHH
Q psy2160 598 ------L-KP---------KK----------------------------------------------------KRKKDLE 609 (773)
Q Consensus 598 ------~-~~---------~~----------------------------------------------------~k~~~~~ 609 (773)
. .+ .. .+.+..+
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (612)
T TIGR01645 390 LVAPPGLVAPTEINPSFLASPRKKMKREKLPVTFGALDDTLAWKEPSKEDQTSEDGKMLAIMGEAAAALALEPKKKKKEK 469 (612)
T ss_pred cCCCccccCCCcCchhhhcCcccccccccccccccccccchhccccchhhhhhhhhhhcccchhhHHHHhhhhhHHhhhh
Confidence 0 00 00 0000011
Q ss_pred HHHHHhhhccCCCCccccCC--------------------CCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcC
Q psy2160 610 KLKKAQEKLFDWRPDKMRGE--------------------RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC 669 (773)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~f 669 (773)
.....+..+.+|+++..... +...+++|+|+||+++.+++ .+|++||+++|++|
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~rp~~S~vVvL~NMv~~~eld------edl~eDV~eEC~K~ 543 (612)
T TIGR01645 470 EGEELQPKLVMNSEDASLASQEGMSIRGNSARHLVMQKLMRTNRSNVIVLRNMVTPQDID------EFLEGEIREECGKF 543 (612)
T ss_pred hhhhhcccccccccccccccccccccccchhhHHHHHhhcCCCCCCEEEEeCCCChHHhH------HHHHHHHHHHhhcC
Confidence 11122223445654322111 12358999999999987664 45789999999999
Q ss_pred CceeEEEecCCCC--------CcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 670 GHVKKVVLHDKHP--------EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 670 G~V~~v~i~~~~~--------~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
|.|.+|.|++..+ .|.+||+|.+.++|.+|+..||||+|+||+|.|+|||+..
T Consensus 544 G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~a~~yd~~~ 604 (612)
T TIGR01645 544 GVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVVAEAYDQIL 604 (612)
T ss_pred ceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEEEEEcCHHH
Confidence 9999999998432 2458999999999999999999999999999999999743
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=6.9e-38 Score=345.23 Aligned_cols=307 Identities=20% Similarity=0.269 Sum_probs=220.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.+ |+|++|+.||+++|||||+|.+.++|..||..|||..|.|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~--------v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~ 73 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIES--------CKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK 73 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEE--------EEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe
Confidence 3589999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|+|.++.... . ....+.|+|.|| |..+.+
T Consensus 74 ~i~v~~a~~~~--~--------------------------------------~~~~~~l~v~~l--~~~~~~-------- 103 (352)
T TIGR01661 74 TIKVSYARPSS--D--------------------------------------SIKGANLYVSGL--PKTMTQ-------- 103 (352)
T ss_pred eEEEEeecccc--c--------------------------------------ccccceEEECCc--cccCCH--------
Confidence 99998875211 0 112457999999 334432
Q ss_pred HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcccccchhHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTRYKIQETAEE 447 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~~~~~~~~~e 447 (773)
++|+.+|+.||.|..+.+.. +.++|+|||+|.+.++|..|+..|||..+.| ++|.+.+...............
T Consensus 104 -~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~ 182 (352)
T TIGR01661 104 -HELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQ 182 (352)
T ss_pred -HHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCch
Confidence 88999999999999887653 3478999999999999999999999999987 5677776543221000000000
Q ss_pred HH--HHHHHHH---------------------------HHhhhhhh-hhhhhcccCC--CCCCCCCCchHHhh--hhHhh
Q psy2160 448 RE--ARLKKWE---------------------------TFLGKKIK-VERAKFTMKG--EAYDPKLKPKKKRK--KDLEK 493 (773)
Q Consensus 448 ~~--~r~~~~~---------------------------~~l~~~~~-~~~~~~~~~G--~~~~p~~~~~~~r~--~~~~~ 493 (773)
.. ....... .+...... .......... ....|......... .....
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (352)
T TIGR01661 183 LEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQI 262 (352)
T ss_pred hhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCC
Confidence 00 0000000 00000000 0000000000 00000000000000 00000
Q ss_pred hhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 494 LKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 494 ~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
........+|||+|||.++++++|+++|++||.|. +|+|++|+.||.++|||||+|.+.++|..||..|||.
T Consensus 263 ~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~--------~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~ 334 (352)
T TIGR01661 263 AASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ--------NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGY 334 (352)
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCC
Confidence 00122345799999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|+.|+|.++..
T Consensus 335 ~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 335 TLGNRVLQVSFKTN 348 (352)
T ss_pred EECCeEEEEEEccC
Confidence 99999999999873
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.3e-37 Score=355.01 Aligned_cols=311 Identities=27% Similarity=0.401 Sum_probs=238.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|.++|++||.|.. |+|++|..||+++|||||+|.+.++|.+||. |+|..|.|+
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~--------v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~ 158 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRD--------VQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR 158 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 6789999999999999999999999999998 9999999999999999999999999999997 899999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|..+.... +. ..
T Consensus 159 ~i~v~~~~~~~---------------------------------------------------~~---~~----------- 173 (457)
T TIGR01622 159 PIIVQSSQAEK---------------------------------------------------NR---AA----------- 173 (457)
T ss_pred eeEEeecchhh---------------------------------------------------hh---hh-----------
Confidence 99995432000 00 00
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
. .+ ....+
T Consensus 174 ------------------------~--------------~~-~~~~~--------------------------------- 181 (457)
T TIGR01622 174 ------------------------K--------------AA-THQPG--------------------------------- 181 (457)
T ss_pred ------------------------h--------------cc-cccCC---------------------------------
Confidence 0 00 00000
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
.....++|||+|||.++|+++|+++|+.||.|.
T Consensus 182 ------------------------------------------~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~----- 214 (457)
T TIGR01622 182 ------------------------------------------DIPNFLKLYVGNLHFNITEQELRQIFEPFGDIE----- 214 (457)
T ss_pred ------------------------------------------CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeE-----
Confidence 001257899999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCC-----------CC-ch
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPK-----------LK-PK 601 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~-----------~~-~~ 601 (773)
.|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|++|.|.+|............ .. ..
T Consensus 215 ---~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (457)
T TIGR01622 215 ---DVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNT 291 (457)
T ss_pred ---EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCc
Confidence 7999999998999999999999999999999999999999999999998732211100000 00 00
Q ss_pred hhhHHHHHHHHHHh-----------------hhcc-------------------CCCCcc-c-cCCCCCCCcEEEEecCC
Q psy2160 602 KKRKKDLEKLKKAQ-----------------EKLF-------------------DWRPDK-M-RGERSKNESVIIVKNLF 643 (773)
Q Consensus 602 ~~k~~~~~~~~~~~-----------------~~~~-------------------~~~~~~-~-~~~~~~~~~~l~ikNl~ 643 (773)
.........+.... ..+. .+.... . ......++++|+|+||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~ 371 (457)
T TIGR01622 292 EEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMF 371 (457)
T ss_pred cchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCC
Confidence 00111111110000 0000 000000 0 00023567999999999
Q ss_pred CccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 644 DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 644 ~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
.+.+ ..++.++.+|++||+++|++||.|..|.|....+.|+|||+|.++++|.+|+..|||++|+||.|.|.|+...
T Consensus 372 ~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 372 DPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred CCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 8864 5678899999999999999999999999988888999999999999999999999999999999999997753
No 8
>KOG0123|consensus
Probab=100.00 E-value=3.9e-36 Score=326.79 Aligned_cols=339 Identities=25% Similarity=0.397 Sum_probs=275.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
..|||+ +++|+..|.++|+++|.|.+ |++++|. | +-|||||.|.++++|.+||..||...+.|++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s--------~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~ 67 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLS--------IRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPI 67 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCcee--------EEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEE
Confidence 478999 89999999999999999999 9999999 6 99999999999999999999999999999999
Q ss_pred EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160 296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 375 (773)
Q Consensus 296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e 375 (773)
+|-++ . .||+ .|+|+|| ++ .++. .
T Consensus 68 rim~s------~-rd~~--------------------------------------~~~i~nl-~~-~~~~---------~ 91 (369)
T KOG0123|consen 68 RIMWS------Q-RDPS--------------------------------------LVFIKNL-DE-SIDN---------K 91 (369)
T ss_pred Eeehh------c-cCCc--------------------------------------eeeecCC-Cc-ccCc---------H
Confidence 99443 3 2222 2999999 33 3332 7
Q ss_pred HHHHHhhccCCEEEEEeeC--CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 376 DLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 376 dL~e~f~k~G~V~~V~i~d--~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
+|.+.|+.||.|.+|.+.. +.+.|+ ||+|.+.++|.+|+..|||..+.|++|.+.....+.. ...
T Consensus 92 ~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e---------r~~--- 158 (369)
T KOG0123|consen 92 SLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE---------REA--- 158 (369)
T ss_pred HHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh---------hcc---
Confidence 8999999999999998763 347899 9999999999999999999999999999987543210 000
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
|. . ......+.+||.|++.+++.+.|..+|+.+|.|.
T Consensus 159 -------------------------~~-----------~--~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~----- 195 (369)
T KOG0123|consen 159 -------------------------PL-----------G--EYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT----- 195 (369)
T ss_pred -------------------------cc-----------c--chhhhhhhhheeccccccchHHHHHhhcccCcce-----
Confidence 00 0 0112468899999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHH
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 613 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 613 (773)
++.++.+.. |.++|||||.|.++++|..|+..||+..+.|..+.|..+... .++... +.+
T Consensus 196 ---s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk-------------~e~~~~---l~~ 255 (369)
T KOG0123|consen 196 ---SVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKK-------------SEREAE---LKR 255 (369)
T ss_pred ---EEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccc-------------hhhHHH---Hhh
Confidence 899999987 779999999999999999999999999999999999998831 111111 111
Q ss_pred HhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec---CCCCCcEEEEEe
Q psy2160 614 AQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFF 690 (773)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~---~~~~~G~afV~F 690 (773)
.+..... .........+|+|+|+... +.. +.|++.|+.||.|+++.|. .+.+.|++||+|
T Consensus 256 ~~~~~~~------~~~~~~~~~nl~vknld~~--~~~---------e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~f 318 (369)
T KOG0123|consen 256 KFEQEFA------KRSVSLQGANLYVKNLDET--LSD---------EKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEF 318 (369)
T ss_pred hhHhhhh------hccccccccccccccCccc--cch---------hHHHHHHhcccceeeEEEEeccCCCccceEEEEc
Confidence 1111100 0111234578999998554 333 8999999999999998664 378899999999
Q ss_pred cCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 691 KEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 691 ~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
.++++|.+|+..|||+.++|+.|.|..
T Consensus 319 s~~eeA~~A~~~~n~~~i~~k~l~vav 345 (369)
T KOG0123|consen 319 SSPEEAKKAMTEMNGRLIGGKPLYVAV 345 (369)
T ss_pred CCHHHHHHHHHhhChhhhcCCchhhhH
Confidence 999999999999999999999998865
No 9
>KOG0127|consensus
Probab=100.00 E-value=1.4e-35 Score=316.04 Aligned_cols=428 Identities=24% Similarity=0.311 Sum_probs=276.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 294 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~ 294 (773)
..||||++||++++.++|.++||.+|+|.. +.++.++.++.++|||||+|...++++.|+..++++.|.|+.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~--------~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~ 76 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKH--------AVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRI 76 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcce--------eEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccccee
Confidence 389999999999999999999999999998 899999988899999999999999999999999999999999
Q ss_pred EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccC-CCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDW-RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~-~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
|.|.+|..........+..+. ..++.... ++..... ......|+|+|| |.....
T Consensus 77 l~v~~A~~R~r~e~~~~~e~~-------------~veK~~~q~~~~k~~v--~~~k~rLIIRNL--Pf~~k~-------- 131 (678)
T KOG0127|consen 77 LNVDPAKKRARSEEVEKGENK-------------AVEKPIEQKRPTKAKV--DLPKWRLIIRNL--PFKCKK-------- 131 (678)
T ss_pred cccccccccccchhcccccch-------------hhhcccccCCcchhhc--cCccceEEeecC--CcccCc--------
Confidence 999988743322211111100 00000000 0000000 011345999999 555443
Q ss_pred HHHHHHHhhccCCEEEEEeeCC---CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREA 450 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~---~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~ 450 (773)
.+|..+|+.||.|..|.|+.+ .-.|+|||+|....+|..|+..|||..|.||+|-|.|+..+..|.-....+ .+
T Consensus 132 -~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~--~~ 208 (678)
T KOG0127|consen 132 -PDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEE--KQ 208 (678)
T ss_pred -HHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhh--hh
Confidence 789999999999999999853 345999999999999999999999999999999999998887765422111 11
Q ss_pred HHHHHHHHhhh-------------hhhhhhh-----------hccc------CCCCCC----CCCCchHHhhhhHhhhhc
Q psy2160 451 RLKKWETFLGK-------------KIKVERA-----------KFTM------KGEAYD----PKLKPKKKRKKDLEKLKK 496 (773)
Q Consensus 451 r~~~~~~~l~~-------------~~~~~~~-----------~~~~------~G~~~~----p~~~~~~~r~~~~~~~~~ 496 (773)
.+..-....+. +.....+ .+.. .+...+ +.-.+..+......-...
T Consensus 209 s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en 288 (678)
T KOG0127|consen 209 SLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTREN 288 (678)
T ss_pred hhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhcccccccc
Confidence 11111000000 0000000 0000 000000 000000000000000112
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-----C
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-----D 571 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-----n 571 (773)
.....+|||+|||+++|+++|.++|++||.|. .+.|+.++.||+++|.|||.|.+...|+.||... .
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~--------ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~ 360 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK--------YAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASED 360 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccce--------eEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCC
Confidence 33458999999999999999999999999999 5889999999999999999999999999999877 3
Q ss_pred C-ceecCeEEEEEEccccccCCcCC-----------------------------CCCCc--hhhhHHHHHHHHHHhhhcc
Q psy2160 572 G-YEIRGKKIKVERAKFTMKGEAYD-----------------------------PKLKP--KKKRKKDLEKLKKAQEKLF 619 (773)
Q Consensus 572 g-~~i~g~~i~V~~a~~~~~~~~~~-----------------------------~~~~~--~~~k~~~~~~~~~~~~~~~ 619 (773)
| ..|.||.|.|.+|.-......+. ..+.. ...|.. ++ ....+++
T Consensus 361 g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer-~~---~~k~k~l 436 (678)
T KOG0127|consen 361 GSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRER-IA---ERKRKKL 436 (678)
T ss_pred ceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHH-HH---HHHHHhh
Confidence 4 67889999999986321100000 00000 001110 11 0001111
Q ss_pred CCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCC-ceeEE---Ee-----cCCCCCcEEEEEe
Q psy2160 620 DWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG-HVKKV---VL-----HDKHPEGVAQIFF 690 (773)
Q Consensus 620 ~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG-~V~~v---~i-----~~~~~~G~afV~F 690 (773)
-+ +....+.+.|+|+|||.. ++ |.- |..-+++....|- .|.++ .+ ..+.+.|++||.|
T Consensus 437 -kn-----pnlhlSrtRL~i~Nlpra--mn--~Kq---L~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f 503 (678)
T KOG0127|consen 437 -KN-----PNLHLSRTRLVIRNLPRA--MN--PKQ---LNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGF 503 (678)
T ss_pred -cC-----CceeeehhhhhhhcCccc--cC--HHH---HHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCc
Confidence 01 111223578999999765 43 222 2233444444332 33322 11 1367789999999
Q ss_pred cCHHHHHHHHHHh
Q psy2160 691 KEPEAADACRELL 703 (773)
Q Consensus 691 ~~~e~A~~Ai~~l 703 (773)
..++.|.+|+..+
T Consensus 504 ~EhEhalkalk~~ 516 (678)
T KOG0127|consen 504 TEHEHALKALKVL 516 (678)
T ss_pred cHHHHHHHhhhcc
Confidence 9999999999887
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-34 Score=334.94 Aligned_cols=199 Identities=24% Similarity=0.342 Sum_probs=158.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||..+|+++|+++|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLK--------AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 457999999999999999999999999999 799999998999999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCC--CchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKL--KPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
.|.|.+|............. .+.... ...+. .........++++|+|.||+++.++.+|. .+.
T Consensus 366 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~-----------~~~~~~~~~~s~v~~l~N~~~~~~l~~d~-~~~ 430 (509)
T TIGR01642 366 KLHVQRACVGANQATIDTSNGMAPVTLL---AKALS-----------QSILQIGGKPTKVVQLTNLVTGDDLMDDE-EYE 430 (509)
T ss_pred EEEEEECccCCCCCCccccccccccccc---cccch-----------hhhccccCCCceEEEeccCCchhHhcCcc-hHH
Confidence 99999997543321110000 000000 00000 00001123457899999999887766543 568
Q ss_pred HHHHHHHHHHhcCCceeEEEecCC-------CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 720 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~~-------~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg 720 (773)
+|.++|+++|++||.|.+|.|+.. ...|+|||+|.+.++|.+|+..|||+.|+||.|.|.||+.
T Consensus 431 ~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 431 EIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 999999999999999999998753 2358999999999999999999999999999999999885
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9e-34 Score=312.48 Aligned_cols=286 Identities=21% Similarity=0.275 Sum_probs=212.9
Q ss_pred CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFG 424 (773)
Q Consensus 349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~ 424 (773)
..+|||+|| |..+.+ ++|+++|+.||+|..|.|.. +.++|||||+|.+.++|.+|+..|||..+.
T Consensus 3 ~~~l~V~nL--p~~~~e---------~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~ 71 (352)
T TIGR01661 3 KTNLIVNYL--PQTMTQ---------EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ 71 (352)
T ss_pred CcEEEEeCC--CCCCCH---------HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC
Confidence 468999999 444443 89999999999999998752 457899999999999999999999999999
Q ss_pred CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160 425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY 504 (773)
Q Consensus 425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~ 504 (773)
|+.|.|.+..+.. .....++||
T Consensus 72 g~~i~v~~a~~~~----------------------------------------------------------~~~~~~~l~ 93 (352)
T TIGR01661 72 NKTIKVSYARPSS----------------------------------------------------------DSIKGANLY 93 (352)
T ss_pred CeeEEEEeecccc----------------------------------------------------------cccccceEE
Confidence 9999998643211 012356899
Q ss_pred EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEE
Q psy2160 505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKV 582 (773)
Q Consensus 505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V 582 (773)
|+|||.++++++|+.+|+.||.|. .++++.+..+|.++|||||+|.+.++|..||+.|||..+.| .+|.|
T Consensus 94 v~~l~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v 165 (352)
T TIGR01661 94 VSGLPKTMTQHELESIFSPFGQII--------TSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITV 165 (352)
T ss_pred ECCccccCCHHHHHHHHhccCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 999999999999999999999998 79999998788999999999999999999999999999987 67899
Q ss_pred EEccccccCCc--CCC----CCCchh--------------------------hhHHHHHHHHHHhhh---ccCC-----C
Q psy2160 583 ERAKFTMKGEA--YDP----KLKPKK--------------------------KRKKDLEKLKKAQEK---LFDW-----R 622 (773)
Q Consensus 583 ~~a~~~~~~~~--~~~----~~~~~~--------------------------~k~~~~~~~~~~~~~---~~~~-----~ 622 (773)
.++........ ..+ ...+.. ............+.. ...+ .
T Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (352)
T TIGR01661 166 KFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRAS 245 (352)
T ss_pred EECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCC
Confidence 98864321100 000 000000 000000000000000 0000 0
Q ss_pred C---ccc-----c----CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEE
Q psy2160 623 P---DKM-----R----GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVA 686 (773)
Q Consensus 623 ~---~~~-----~----~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~a 686 (773)
+ ... . ......+.+|+|+||+.. ++ +++|+++|++||.|.+|.|.. +.++|+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~--~~---------e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~a 314 (352)
T TIGR01661 246 PPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPD--TD---------ETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYG 314 (352)
T ss_pred CccccccccccccCCCCCCCCCCCcEEEEeCCCCC--CC---------HHHHHHHHHhCCCeEEEEEeEcCCCCCccceE
Confidence 0 000 0 000123458999999765 33 389999999999999998763 5689999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 687 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 687 fV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
||.|.+.++|.+||..|||..|+||+|.|.|...++
T Consensus 315 FV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 315 FVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999999999999999999999999999999966543
No 12
>KOG0117|consensus
Probab=100.00 E-value=1.1e-33 Score=296.20 Aligned_cols=253 Identities=26% Similarity=0.393 Sum_probs=214.1
Q ss_pred CCCCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHH
Q psy2160 202 KPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL 280 (773)
Q Consensus 202 ~~~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~ 280 (773)
...+|.|....| ..|.|||+.||.|+.|++|.-||.+.|.|-+ ++|++|+.+|.++|||||+|.+.+.|+.
T Consensus 69 ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e--------lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~ 140 (506)
T KOG0117|consen 69 GGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE--------LRLMMDPFSGDNRGYAFVTFCTKEEAQE 140 (506)
T ss_pred CCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee--------EEEeecccCCCCcceEEEEeecHHHHHH
Confidence 344566877766 9999999999999999999999999999999 9999999889999999999999999999
Q ss_pred HHHHcCCceec-CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCC
Q psy2160 281 ALSILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFD 359 (773)
Q Consensus 281 Al~~lng~~l~-g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~ 359 (773)
||+.||+++|+ |+.|.|..+. ..+.|||.|++.
T Consensus 141 Aik~lnn~Eir~GK~igvc~Sv----------------------------------------------an~RLFiG~IPK 174 (506)
T KOG0117|consen 141 AIKELNNYEIRPGKLLGVCVSV----------------------------------------------ANCRLFIGNIPK 174 (506)
T ss_pred HHHHhhCccccCCCEeEEEEee----------------------------------------------ecceeEeccCCc
Confidence 99999999995 8999997643 245699999954
Q ss_pred ccccchhhHHHHHHHHHHHHHhhccCC-EEEEEeeC-----CCCCeEEEEEecCHHHHHHHHHHh-CCc-ccCCeeEEEE
Q psy2160 360 PALFDKDVTLILEYQQDLREECSKCGH-VKKVVLHD-----KHPEGVAQIFFKEPEAADACRELL-NGR-WFGQRQITAE 431 (773)
Q Consensus 360 p~~~~~d~~~~~ei~edL~e~f~k~G~-V~~V~i~d-----~~~~G~afV~F~~~e~A~~Ai~~l-ng~-~~~Gr~I~v~ 431 (773)
... +++|.+++++.++ |..|.++. ...+|||||.|.+...|..|.+.| +|+ .+.|..+.|.
T Consensus 175 ~k~-----------keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVd 243 (506)
T KOG0117|consen 175 TKK-----------KEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVD 243 (506)
T ss_pred ccc-----------HHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceee
Confidence 333 4889999999875 66777763 247999999999999999987766 444 3679999999
Q ss_pred ecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCC
Q psy2160 432 TWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD 511 (773)
Q Consensus 432 ~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~ 511 (773)
|+++.... +++. -..-..|||+||+.+
T Consensus 244 WAep~~e~-----ded~------------------------------------------------ms~VKvLYVRNL~~~ 270 (506)
T KOG0117|consen 244 WAEPEEEP-----DEDT------------------------------------------------MSKVKVLYVRNLMES 270 (506)
T ss_pred ccCcccCC-----Chhh------------------------------------------------hhheeeeeeeccchh
Confidence 98765410 0000 012468999999999
Q ss_pred CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160 512 LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 588 (773)
Q Consensus 512 ~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~ 588 (773)
+|+|.|.++|++||.|. +|+.++| ||||.|.+.++|.+|++.+||++|.|..|.|.+|+..
T Consensus 271 tTeE~lk~~F~~~G~ve--------RVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 271 TTEETLKKLFNEFGKVE--------RVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hhHHHHHHHHHhccceE--------Eeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 99999999999999999 7777744 9999999999999999999999999999999999954
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.1e-32 Score=322.17 Aligned_cols=269 Identities=23% Similarity=0.336 Sum_probs=217.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++++++|+++|++||.|.. |+|..+.. |+++|||||.|.+.++|..||+.|||..+.|+
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~--------~~i~~~~~-g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILS--------CKVATDEN-GKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcce--------eEeeecCC-CCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 4578999999999999999999999999998 99999986 99999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|.|...... .. .. .......++|+|+||+ ..+++
T Consensus 158 ~i~v~~~~~~--~~-~~--------------------------------~~~~~~~~~l~V~nl~--~~~te-------- 192 (562)
T TIGR01628 158 EVYVGRFIKK--HE-RE--------------------------------AAPLKKFTNLYVKNLD--PSVNE-------- 192 (562)
T ss_pred eEEEeccccc--cc-cc--------------------------------cccccCCCeEEEeCCC--CcCCH--------
Confidence 9999654311 00 00 0012234679999993 34333
Q ss_pred HHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccC----CeeEEEEecCCCcccccchhHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG----QRQITAETWDGKTRYKIQETAE 446 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~----Gr~I~v~~~~~~~~~~~~~~~~ 446 (773)
++|+++|+.||.|.++.+.. +.++|+|||.|.+.++|.+|+..|||..+. |+.+.+.....+..
T Consensus 193 -e~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~e-------- 263 (562)
T TIGR01628 193 -DKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAE-------- 263 (562)
T ss_pred -HHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhh--------
Confidence 88999999999999997763 457899999999999999999999999999 99999876533210
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCc
Q psy2160 447 EREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGL 526 (773)
Q Consensus 447 e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~ 526 (773)
....+ ....... ..........++|||+|||.++|+++|+++|+.||.
T Consensus 264 -r~~~~---~~~~~~~----------------------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 264 -REAEL---RRKFEEL----------------------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred -hHHHH---HhhHHhh----------------------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 00000 0000000 000011235678999999999999999999999999
Q ss_pred ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160 527 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 527 I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~ 586 (773)
|. +|+|+.|. +|.++|||||+|.+.++|.+|+..|||..|.|++|.|.+|.
T Consensus 312 i~--------~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 312 IT--------SAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred eE--------EEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 99 79999994 59999999999999999999999999999999999999998
No 14
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.4e-33 Score=313.40 Aligned_cols=250 Identities=25% Similarity=0.375 Sum_probs=205.3
Q ss_pred CCCCCccCCC-CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160 204 EPPKWFDIGE-ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL 282 (773)
Q Consensus 204 ~~~~~~~~~~-~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al 282 (773)
.++.|....| ..|+|||+|||.++++++|+++|++||.|.. |+|++| .+|+++|||||+|.+.++|+.||
T Consensus 46 Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~--------vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai 116 (578)
T TIGR01648 46 PPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYE--------LRLMMD-FSGQNRGYAFVTFCGKEEAKEAV 116 (578)
T ss_pred CCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEE--------EEEEEC-CCCCccceEEEEeCCHHHHHHHH
Confidence 4567876666 8899999999999999999999999999998 999999 55999999999999999999999
Q ss_pred HHcCCceec-CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCcc
Q psy2160 283 SILDGYEIR-GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPA 361 (773)
Q Consensus 283 ~~lng~~l~-g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~ 361 (773)
+.||+..|. |+.|.|..+. ..++|||+||+ .
T Consensus 117 ~~lng~~i~~Gr~l~V~~S~----------------------------------------------~~~rLFVgNLP--~ 148 (578)
T TIGR01648 117 KLLNNYEIRPGRLLGVCISV----------------------------------------------DNCRLFVGGIP--K 148 (578)
T ss_pred HHcCCCeecCCccccccccc----------------------------------------------cCceeEeecCC--c
Confidence 999999986 6777774321 24679999994 3
Q ss_pred ccchhhHHHHHHHHHHHHHhhccCC-EEEEEeeC-----CCCCeEEEEEecCHHHHHHHHHHhCC--cccCCeeEEEEec
Q psy2160 362 LFDKDVTLILEYQQDLREECSKCGH-VKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNG--RWFGQRQITAETW 433 (773)
Q Consensus 362 ~~~~d~~~~~ei~edL~e~f~k~G~-V~~V~i~d-----~~~~G~afV~F~~~e~A~~Ai~~lng--~~~~Gr~I~v~~~ 433 (773)
... +++|.++|++++. +..+.++. ..++|+|||.|.+.++|..|+..|+. ..+.|+.|.|.+.
T Consensus 149 ~~T---------eeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 149 NKK---------REEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWA 219 (578)
T ss_pred chh---------hHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEee
Confidence 333 3789999999863 55555542 24689999999999999999988753 3478999999875
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCC
Q psy2160 434 DGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLT 513 (773)
Q Consensus 434 ~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t 513 (773)
...... + + ......++|||+|||.++|
T Consensus 220 ~p~~~~-----d---------------------------------~---------------~~~~~~k~LfVgNL~~~~t 246 (578)
T TIGR01648 220 EPEEEV-----D---------------------------------E---------------DVMAKVKILYVRNLMTTTT 246 (578)
T ss_pred cccccc-----c---------------------------------c---------------cccccccEEEEeCCCCCCC
Confidence 432200 0 0 0012347899999999999
Q ss_pred HHHHHHHHHhc--CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160 514 QEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 588 (773)
Q Consensus 514 ~e~L~~~F~~~--G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~ 588 (773)
+++|+++|+.| |.|. +|+++ ++||||+|.+.++|.+|+..|||..|.|+.|+|.+|+..
T Consensus 247 ee~L~~~F~~f~~G~I~--------rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 247 EEIIEKSFSEFKPGKVE--------RVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred HHHHHHHHHhcCCCceE--------EEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 99999999999 9998 67765 569999999999999999999999999999999999753
No 15
>KOG0124|consensus
Probab=100.00 E-value=7.9e-33 Score=281.65 Aligned_cols=306 Identities=26% Similarity=0.479 Sum_probs=231.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
-.|+|||+.+.+.+.|+.|+..|..||+|.+ |.|..|+-||+.||||||+|.-+|.|++|++.|||..++||
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKS--------InMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKS--------INMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcce--------eecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 5699999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|+|.+.. ||+.
T Consensus 184 NiKVgrPs------------------------------------------------------NmpQ-------------- 195 (544)
T KOG0124|consen 184 NIKVGRPS------------------------------------------------------NMPQ-------------- 195 (544)
T ss_pred cccccCCC------------------------------------------------------CCcc--------------
Confidence 99993211 3311
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
|+-.|..+.
T Consensus 196 -------------------------------------AQpiID~vq---------------------------------- 204 (544)
T KOG0124|consen 196 -------------------------------------AQPIIDMVQ---------------------------------- 204 (544)
T ss_pred -------------------------------------cchHHHHHH----------------------------------
Confidence 111111110
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
......++|||..+.++.++++|+.+|+.||.|.
T Consensus 205 -----------------------------------------eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~----- 238 (544)
T KOG0124|consen 205 -----------------------------------------EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV----- 238 (544)
T ss_pred -----------------------------------------HHHHhhheEEeeecCCCccHHHHHHHHHhhccee-----
Confidence 0011356899999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccccc-----------------------
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMK----------------------- 590 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~----------------------- 590 (773)
.|+|.+++.++.++|||||+|.+..+-..||..||-+.++|..|+|..+.-...
T Consensus 239 ---~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaT 315 (544)
T KOG0124|consen 239 ---KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAAT 315 (544)
T ss_pred ---eEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHH
Confidence 899999999889999999999999999999999999999999999997542100
Q ss_pred ----------CCc-------------------------------C-------------------------CCCC--Cc--
Q psy2160 591 ----------GEA-------------------------------Y-------------------------DPKL--KP-- 600 (773)
Q Consensus 591 ----------~~~-------------------------------~-------------------------~~~~--~~-- 600 (773)
++. . +|.+ .+
T Consensus 316 AKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~ 395 (544)
T KOG0124|consen 316 AKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTL 395 (544)
T ss_pred HHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCch
Confidence 000 0 0000 00
Q ss_pred ---hhhhHHHHHHHHHHh---hhccCCCCccccC-----------CCCCCCcEEEEecCCCccccccchhhHHHHHHHHH
Q psy2160 601 ---KKKRKKDLEKLKKAQ---EKLFDWRPDKMRG-----------ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 663 (773)
Q Consensus 601 ---~~~k~~~~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~ 663 (773)
.+++.+..+++.... +.+.........+ .+...+++++|+||.+|.++++ +|+.+|+
T Consensus 396 g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe------~LegEi~ 469 (544)
T KOG0124|consen 396 GLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDE------DLEGEIT 469 (544)
T ss_pred hhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhh------HHHHHHH
Confidence 001111111111000 0000000001111 1224589999999999988875 4679999
Q ss_pred HHHhcCCceeEEEecCCCCCc--------EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 664 EECSKCGHVKKVVLHDKHPEG--------VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 664 ~~f~~fG~V~~v~i~~~~~~G--------~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
++|++||.|..|.|+.....+ -.||+|....++.+|+.+|+||||+||+|.++.||..
T Consensus 470 EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE~YDQ~ 535 (544)
T KOG0124|consen 470 EECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAEVYDQE 535 (544)
T ss_pred HHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehhhhhhh
Confidence 999999999999998744333 3899999999999999999999999999999999863
No 16
>KOG0145|consensus
Probab=100.00 E-value=2.2e-32 Score=267.54 Aligned_cols=303 Identities=21% Similarity=0.278 Sum_probs=224.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
+...|.|.|.-||..+|++||+.+|+..|.|.+ ++|++|+-||.+-||+||.|.++++|++||..|||..+.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiES--------cKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ 109 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ 109 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceee--------eeeeeccccccccccceeeecChHHHHHHHhhhcceeec
Confidence 347799999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHH
Q psy2160 292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 371 (773)
Q Consensus 292 g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ 371 (773)
.++|+|.+|+++.. +..+..++|.+| |..+.
T Consensus 110 ~KTIKVSyARPSs~----------------------------------------~Ik~aNLYvSGl--PktMt------- 140 (360)
T KOG0145|consen 110 NKTIKVSYARPSSD----------------------------------------SIKDANLYVSGL--PKTMT------- 140 (360)
T ss_pred cceEEEEeccCChh----------------------------------------hhcccceEEecC--Cccch-------
Confidence 99999999874311 123557999999 44443
Q ss_pred HHHHHHHHHhhccCCEEEEEe-eC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCcccccchhH
Q psy2160 372 EYQQDLREECSKCGHVKKVVL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKTRYKIQETA 445 (773)
Q Consensus 372 ei~edL~e~f~k~G~V~~V~i-~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~~~~~~~~~ 445 (773)
+.+|..+|+.||.|..-+| .| +-++|++||+|....+|..||..|||..-.| .+|.|.+......-......
T Consensus 141 --qkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~l 218 (360)
T KOG0145|consen 141 --QKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALL 218 (360)
T ss_pred --HHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhh
Confidence 4889999999999874433 22 4589999999999999999999999988765 67888765433211100000
Q ss_pred HH----HHHHHHHHHHHhhhhhhhhhh--hc---ccCC-CCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHH
Q psy2160 446 EE----REARLKKWETFLGKKIKVERA--KF---TMKG-EAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQE 515 (773)
Q Consensus 446 ~e----~~~r~~~~~~~l~~~~~~~~~--~~---~~~G-~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e 515 (773)
.. ...|... -+.. ..++. .. ...+ ..++|........-....-........+|||.||.++..+.
T Consensus 219 s~ly~sp~rr~~G---p~hh--~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~ 293 (360)
T KOG0145|consen 219 SQLYQSPARRYGG---PMHH--QAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADES 293 (360)
T ss_pred HHhhcCccccCCC---cccc--hhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHh
Confidence 00 0000000 0000 00000 00 0000 00111110000000000011223456899999999999999
Q ss_pred HHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160 516 EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 516 ~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~ 586 (773)
-|.++|.+||.|. +|+|++|..|.+++|||||++.+.++|..||..|||..++++.|.|.+-.
T Consensus 294 ~LWQlFgpFGAv~--------nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 294 ILWQLFGPFGAVT--------NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred HHHHHhCccccee--------eEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 9999999999999 89999999999999999999999999999999999999999999999754
No 17
>KOG0147|consensus
Probab=100.00 E-value=2.8e-32 Score=293.66 Aligned_cols=309 Identities=24% Similarity=0.382 Sum_probs=235.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...+||+-.|+..++..+|.+||+.+|.|.. |+|+.|..+++++|.|||+|.+.+++.+||. |.|..+.|.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrd--------VriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~ 248 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRD--------VRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGV 248 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcce--------eEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCc
Confidence 7789999999999999999999999999998 9999999999999999999999999999996 999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|+.... +
T Consensus 249 pv~vq~sEa-------------------------------------------------------------e--------- 258 (549)
T KOG0147|consen 249 PVIVQLSEA-------------------------------------------------------------E--------- 258 (549)
T ss_pred eeEecccHH-------------------------------------------------------------H---------
Confidence 999944220 0
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
... ...++-.+.|.-..
T Consensus 259 --------------------------------------knr-~a~~s~a~~~k~~~------------------------ 275 (549)
T KOG0147|consen 259 --------------------------------------KNR-AANASPALQGKGFT------------------------ 275 (549)
T ss_pred --------------------------------------HHH-HHhccccccccccc------------------------
Confidence 000 00011111110000
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
.+...|||+||.+++|++.|+.+|+.||.|.
T Consensus 276 --------------------------------------------~p~~rl~vgnLHfNite~~lr~ifepfg~Ie----- 306 (549)
T KOG0147|consen 276 --------------------------------------------GPMRRLYVGNLHFNITEDMLRGIFEPFGKIE----- 306 (549)
T ss_pred --------------------------------------------cchhhhhhcccccCchHHHHhhhccCcccce-----
Confidence 0122399999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCc-------CC----CCCCc-h
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA-------YD----PKLKP-K 601 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~-------~~----~~~~~-~ 601 (773)
.|.+.+|..||+++|||||+|.+.++|..|+..|||..|.|+.|+|........... .+ ..+.. .
T Consensus 307 ---~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~ 383 (549)
T KOG0147|consen 307 ---NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGS 383 (549)
T ss_pred ---eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccc
Confidence 899999998999999999999999999999999999999999999987654322111 11 00000 1
Q ss_pred hhhHHHHHHHHHHhh---------hc------------------cCCCCccccCCCCCCCcEEEEecCCCccccccchhh
Q psy2160 602 KKRKKDLEKLKKAQE---------KL------------------FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTL 654 (773)
Q Consensus 602 ~~k~~~~~~~~~~~~---------~~------------------~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~ 654 (773)
..+.+.+.++..... .+ ....+....+.-..++.|+.|+|||+|.+ ++.|+|
T Consensus 384 ~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpst-ete~n~ 462 (549)
T KOG0147|consen 384 GGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPST-ETEPNW 462 (549)
T ss_pred ccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCccc-ccCcch
Confidence 112222333221100 00 00001101111125688999999999976 456999
Q ss_pred HHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160 655 ILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW 718 (773)
Q Consensus 655 ~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~ 718 (773)
-.+|++||.++|++||.|..|.|..+. .|++||+|.+.++|..|+.+|||+||+||.|.+.|.
T Consensus 463 d~eI~edV~Eec~k~g~v~hi~vd~ns-~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 463 DQEIREDVIEECGKHGKVCHIFVDKNS-AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred hhHHHHHHHHHHHhcCCeeEEEEccCC-CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 999999999999999999999886654 499999999999999999999999999999999984
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=7.3e-30 Score=289.50 Aligned_cols=282 Identities=20% Similarity=0.256 Sum_probs=215.5
Q ss_pred ChHHHHHHHHHcCCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEE
Q psy2160 274 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVII 353 (773)
Q Consensus 274 ~~esA~~Al~~lng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~ 353 (773)
-.++|.+||..++|+.+........+.. |. ..|. ...+...+.||
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~---------Pp---------------------~~~~-----~~~p~~~~~lF 62 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGG---------PP---------------------PGWS-----GVQPGRGCEVF 62 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCC---------CC---------------------Cccc-----CCCCCCCCEEE
Confidence 3678999998889887755444442221 10 0121 11133467899
Q ss_pred EecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEE
Q psy2160 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQIT 429 (773)
Q Consensus 354 l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~ 429 (773)
|+|| |..+.+ ++|+++|++||.|..|.|+ .+.++|+|||+|.+.++|.+||..||+..+. |+.|.
T Consensus 63 VgnL--p~~~tE---------d~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~ 131 (578)
T TIGR01648 63 VGKI--PRDLYE---------DELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLG 131 (578)
T ss_pred eCCC--CCCCCH---------HHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccc
Confidence 9999 444443 8999999999999999775 2568999999999999999999999998875 66665
Q ss_pred EEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCC
Q psy2160 430 AETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLP 509 (773)
Q Consensus 430 v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp 509 (773)
+.. ...+++|||+|||
T Consensus 132 V~~----------------------------------------------------------------S~~~~rLFVgNLP 147 (578)
T TIGR01648 132 VCI----------------------------------------------------------------SVDNCRLFVGGIP 147 (578)
T ss_pred ccc----------------------------------------------------------------cccCceeEeecCC
Confidence 532 1235799999999
Q ss_pred CCCCHHHHHHHHHhcCcceeccCCCceEEEEE-ecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ceecCeEEEEEEcc
Q psy2160 510 LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILDG--YEIRGKKIKVERAK 586 (773)
Q Consensus 510 ~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~-~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~i~g~~i~V~~a~ 586 (773)
.++|+++|.+.|++++.... .+.++ .....++++|||||+|.++++|..|++.|+. ..+.|+.|.|.++.
T Consensus 148 ~~~TeeeL~eeFskv~egvv-------~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~ 220 (578)
T TIGR01648 148 KNKKREEILEEFSKVTEGVV-------DVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAE 220 (578)
T ss_pred cchhhHHHHHHhhcccCCce-------EEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeec
Confidence 99999999999999975321 23333 3334467899999999999999999988864 35789999999987
Q ss_pred ccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHH
Q psy2160 587 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREEC 666 (773)
Q Consensus 587 ~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f 666 (773)
...... .......++|+|+||+.. +++ ++|+++|
T Consensus 221 p~~~~d-----------------------------------~~~~~~~k~LfVgNL~~~--~te---------e~L~~~F 254 (578)
T TIGR01648 221 PEEEVD-----------------------------------EDVMAKVKILYVRNLMTT--TTE---------EIIEKSF 254 (578)
T ss_pred cccccc-----------------------------------ccccccccEEEEeCCCCC--CCH---------HHHHHHH
Confidence 321100 001123479999999765 443 8999999
Q ss_pred hcC--CceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 667 SKC--GHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 667 ~~f--G~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
++| |.|.+|.+.. |+|||+|.+.++|.+|+..|||..|+|+.|+|.+..+..
T Consensus 255 ~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 255 SEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred HhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 999 9999997754 799999999999999999999999999999999986654
No 19
>KOG0145|consensus
Probab=99.97 E-value=9.5e-30 Score=249.17 Aligned_cols=280 Identities=22% Similarity=0.300 Sum_probs=212.8
Q ss_pred cEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ 425 (773)
Q Consensus 350 ~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G 425 (773)
..++|..| |..+. +++++.+|...|+|++|.+.. +.+-||+||.|.++++|.+|+..|||-.+..
T Consensus 42 TNLIvNYL--PQ~MT---------qdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~ 110 (360)
T KOG0145|consen 42 TNLIVNYL--PQNMT---------QDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN 110 (360)
T ss_pred ceeeeeec--ccccC---------HHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc
Confidence 45777777 55554 489999999999999998874 4688999999999999999999999999999
Q ss_pred eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEE
Q psy2160 426 RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYV 505 (773)
Q Consensus 426 r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V 505 (773)
+.|.|+++.+.. ......+|||
T Consensus 111 KTIKVSyARPSs----------------------------------------------------------~~Ik~aNLYv 132 (360)
T KOG0145|consen 111 KTIKVSYARPSS----------------------------------------------------------DSIKDANLYV 132 (360)
T ss_pred ceEEEEeccCCh----------------------------------------------------------hhhcccceEE
Confidence 999999865432 1234678999
Q ss_pred cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe--EEEEE
Q psy2160 506 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK--KIKVE 583 (773)
Q Consensus 506 ~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~--~i~V~ 583 (773)
++||..+|..+|.++|++||.|. .-+|..|..||.++|.|||.|+...+|..||..|||..-.|. +|.|.
T Consensus 133 SGlPktMtqkelE~iFs~fGrII--------tSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVK 204 (360)
T KOG0145|consen 133 SGLPKTMTQKELEQIFSPFGRII--------TSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVK 204 (360)
T ss_pred ecCCccchHHHHHHHHHHhhhhh--------hhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEE
Confidence 99999999999999999999998 578899999999999999999999999999999999987764 89999
Q ss_pred EccccccCCcCC--------CCCC---c--hhhhHHHHHHHH---HHhhhccCCCCccccC-------CCCCCCcEEEEe
Q psy2160 584 RAKFTMKGEAYD--------PKLK---P--KKKRKKDLEKLK---KAQEKLFDWRPDKMRG-------ERSKNESVIIVK 640 (773)
Q Consensus 584 ~a~~~~~~~~~~--------~~~~---~--~~~k~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~l~ik 640 (773)
+|.......... |... + .....-.+..+. ..+.+......+.+.+ .......||+|.
T Consensus 205 FannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvY 284 (360)
T KOG0145|consen 205 FANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVY 284 (360)
T ss_pred ecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEE
Confidence 987542211110 1000 0 000000000000 0011111111111111 112347899999
Q ss_pred cCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160 641 NLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716 (773)
Q Consensus 641 Nl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~ 716 (773)
||.... + +.-|.++|.+||.|.+|+|.+ +.-+|++||.+.+-++|..||..|||..+++|.|.|+
T Consensus 285 NLspd~--d---------e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 285 NLSPDA--D---------ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred ecCCCc--h---------HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 995432 2 278899999999999998865 5678999999999999999999999999999999999
Q ss_pred E
Q psy2160 717 T 717 (773)
Q Consensus 717 ~ 717 (773)
|
T Consensus 354 F 354 (360)
T KOG0145|consen 354 F 354 (360)
T ss_pred E
Confidence 9
No 20
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=7.6e-29 Score=283.11 Aligned_cols=319 Identities=19% Similarity=0.232 Sum_probs=210.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
.-.+|||+||++.+|+++|+++|++||.|.+ |+|+++.. +|+|||+|.+.++|.+|++.|||..|.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~--------v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLR--------IVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNG 162 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEE--------EEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4468999999999999999999999999998 99887643 4799999999999999999999999965
Q ss_pred -eEEEEEeecccccCC------C--CC-CCCc-hhh--hhHHHHHHHHHHHh--------hhcc--------------CC
Q psy2160 293 -KKIKVERAKFTMKGE------A--YD-PKLK-PKK--KRKKDLEKLKKAQE--------KLFD--------------WR 337 (773)
Q Consensus 293 -~~I~V~~A~~~~k~~------~--~~-p~~~-~~~--~~~k~~~~~~k~~~--------k~~~--------------~~ 337 (773)
++|+|.+|+...-.. . |. |... .+. .......+...... +-++ .+
T Consensus 163 ~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR01649 163 CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG 242 (481)
T ss_pred ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCC
Confidence 589999988532110 0 10 1000 000 00000000000000 0000 00
Q ss_pred CC-------------cc--------CCCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC
Q psy2160 338 PD-------------KM--------RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 396 (773)
Q Consensus 338 ~~-------------~~--------~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~ 396 (773)
+. .. .......+++|+|+||. +..+.+ ++|+++|+.||.|.+|.+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~-~~~vt~---------~~L~~lF~~yG~V~~vki~~~- 311 (481)
T TIGR01649 243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLH-QEKVNC---------DRLFNLFCVYGNVERVKFMKN- 311 (481)
T ss_pred CcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCC-CCCCCH---------HHHHHHHHhcCCeEEEEEEeC-
Confidence 00 00 00001356799999993 222332 789999999999999988754
Q ss_pred CCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC
Q psy2160 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA 476 (773)
Q Consensus 397 ~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~ 476 (773)
.+|+|||+|.+.++|..|+..|||..+.|++|.|.+............ .....+..+.. +. +..
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~--~~~~~~~~~~d------------~~--~~~ 375 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREG--QLDDGLTSYKD------------YS--SSR 375 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCC--cCcCCCccccc------------cc--CCc
Confidence 479999999999999999999999999999999987543221000000 00000000000 00 000
Q ss_pred CCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCc--ceeccCCCceEEEEEecCCCCCCcceEE
Q psy2160 477 YDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDAL 554 (773)
Q Consensus 477 ~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~--I~~~~~~~~~~i~l~~d~~tg~~kG~af 554 (773)
. ..+... ..........+..+|||+|||.++|+++|+++|+.||. |. .|+++.... ..+|+||
T Consensus 376 ~-~r~~~~----~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~--------~ik~~~~~~--~~~~~gf 440 (481)
T TIGR01649 376 N-HRFKKP----GSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVK--------KFKFFPKDN--ERSKMGL 440 (481)
T ss_pred c-ccCCCc----ccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccce--------EEEEecCCC--CcceeEE
Confidence 0 000000 00000011245689999999999999999999999998 65 688875542 3589999
Q ss_pred EEeCChHHHHHHHHHhCCceecCeE------EEEEEcc
Q psy2160 555 CTYIKKESVDLALSILDGYEIRGKK------IKVERAK 586 (773)
Q Consensus 555 V~f~~~e~A~~Ai~~lng~~i~g~~------i~V~~a~ 586 (773)
|+|.+.++|..||..|||+.|.|+. |+|.+++
T Consensus 441 VeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 441 LEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 9999999999999999999999874 8998887
No 21
>KOG0110|consensus
Probab=99.97 E-value=8e-30 Score=281.30 Aligned_cols=396 Identities=24% Similarity=0.311 Sum_probs=262.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..-+|||+|||+.+++++|+.+| |||.|..++.|.+|...+||..+.||
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-------------------------------a~v~~~~~~~avka~~~~D~k~fqgr 274 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-------------------------------AFVTFMFPEHAVKAYSELDGKVFQGR 274 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-------------------------------HHHhhhhhHHHHhhhhhccccccccc
Confidence 67899999999999999999999 68899999999999999999999999
Q ss_pred EEEEEeecccccCC-CCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCC----------------------------
Q psy2160 294 KIKVERAKFTMKGE-AYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGE---------------------------- 344 (773)
Q Consensus 294 ~I~V~~A~~~~k~~-~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~---------------------------- 344 (773)
.|.|-+........ .++-...+ .+..++.++.. ..+....|++..+...
T Consensus 275 mlhvlp~~~k~~~~~~~~~~~~~-~k~~ke~~rk~-~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr 352 (725)
T KOG0110|consen 275 MLHVLPSKEKSTAKEDASELGSD-YKKEKELKRKA-ASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVR 352 (725)
T ss_pred eeeecCcchhhhhhhhHhhcCCc-HHHHHHhcccc-chhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHH
Confidence 99986655321111 00000000 00011111000 1112222322111100
Q ss_pred ----------------------------CCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC
Q psy2160 345 ----------------------------RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 396 (773)
Q Consensus 345 ----------------------------~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~ 396 (773)
..+..++++++|| |..... +.|.+.|..||.|..|.++
T Consensus 353 ~al~etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNl--pa~t~~---------~elt~~F~~fG~i~rvllp--- 418 (725)
T KOG0110|consen 353 LALGETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNL--PAGTLS---------EELTEAFLRFGEIGRVLLP--- 418 (725)
T ss_pred HHHHHhhhchhhhhhHHhhCcccccchhhhhhcceeeeccC--cccccc---------HHHHHHhhcccccceeecC---
Confidence 1345578999999 444332 7899999999999999665
Q ss_pred CCe-EEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccch-hHHH-HHHHHHHHHHHhhhhhhhhhhhcccC
Q psy2160 397 PEG-VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQE-TAEE-REARLKKWETFLGKKIKVERAKFTMK 473 (773)
Q Consensus 397 ~~G-~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~-~~~e-~~~r~~~~~~~l~~~~~~~~~~~~~~ 473 (773)
+.| .++|.|.++.+|..|+..|....|..-++.+.+.. ...+.... .... ...+.. ......++- ....
T Consensus 419 ~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP-~dvf~~~pka~~~~~e~~~~------~ee~~~Er~-s~~d 490 (725)
T KOG0110|consen 419 PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP-EDVFTEDPKADDLSAESRSK------MEENPSERV-SAED 490 (725)
T ss_pred cccceeeeeecCccchHHHHHHhchhhhccCccccccCh-hhhccCCccccccccccccc------cccCcceec-cccc
Confidence 345 49999999999999999999999888888776432 22111000 0000 000000 000000000 0000
Q ss_pred CC---CCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---C
Q psy2160 474 GE---AYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---K 547 (773)
Q Consensus 474 G~---~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g 547 (773)
|. +.+|...... ..........++|||+||++++|.++|..+|+..|.|. +|.|..-+.. -
T Consensus 491 ~~v~eD~d~te~ss~-----a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~Vl--------S~~I~kkkd~~~k~ 557 (725)
T KOG0110|consen 491 GQVEEDKDPTEESSL-----ARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVL--------SIEISKKKDPANKY 557 (725)
T ss_pred ccccccCCccccccc-----hhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEE--------EEEEeccccccccc
Confidence 00 0000000000 00011223345599999999999999999999999998 6777655431 2
Q ss_pred CCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcccc
Q psy2160 548 DFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMR 627 (773)
Q Consensus 548 ~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 627 (773)
.+.|||||+|.++++|+.|++.|+|+.|.|+.|.|+.+.....+. ... ....
T Consensus 558 lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~--~gK-------------------~~~~------- 609 (725)
T KOG0110|consen 558 LSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST--VGK-------------------KKSK------- 609 (725)
T ss_pred cccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc--ccc-------------------cccc-------
Confidence 356999999999999999999999999999999999988221111 000 0000
Q ss_pred CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHh
Q psy2160 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELL 703 (773)
Q Consensus 628 ~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~l 703 (773)
......|+|+|++...+ ..+|+.+|+.||.|.+|.|+. ..++|+|||.|-++.+|.+|+.+|
T Consensus 610 ---kk~~tKIlVRNipFeAt-----------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al 675 (725)
T KOG0110|consen 610 ---KKKGTKILVRNIPFEAT-----------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDAL 675 (725)
T ss_pred ---ccccceeeeeccchHHH-----------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhh
Confidence 01136899999987654 489999999999999999876 345899999999999999999999
Q ss_pred CCceeCCeEEEEEEec
Q psy2160 704 NGRWFGQRQITAETWD 719 (773)
Q Consensus 704 nGr~f~Gr~l~v~~~d 719 (773)
.+.+|-||+|++++..
T Consensus 676 ~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 676 GSTHLYGRRLVLEWAK 691 (725)
T ss_pred cccceechhhheehhc
Confidence 9999999999999854
No 22
>KOG0117|consensus
Probab=99.96 E-value=9.8e-28 Score=251.66 Aligned_cols=245 Identities=20% Similarity=0.239 Sum_probs=202.8
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEee----CCCCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKEPEAADACRELLNGR 421 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~----d~~~~G~afV~F~~~e~A~~Ai~~lng~ 421 (773)
....+-|||..| |.++-+ ++|..+|.+.|.|..++|+ ++.++|||||.|.+.+.|+.||+.||+.
T Consensus 80 p~~G~EVfvGkI--PrD~~E---------deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 80 PPRGCEVFVGKI--PRDVFE---------DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred CCCCceEEecCC--Cccccc---------hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 456778999999 555443 7899999999999999875 2568999999999999999999999999
Q ss_pred cc-CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCC
Q psy2160 422 WF-GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEN 500 (773)
Q Consensus 422 ~~-~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~ 500 (773)
.| .|+.|.|... ..+
T Consensus 149 Eir~GK~igvc~S----------------------------------------------------------------van 164 (506)
T KOG0117|consen 149 EIRPGKLLGVCVS----------------------------------------------------------------VAN 164 (506)
T ss_pred cccCCCEeEEEEe----------------------------------------------------------------eec
Confidence 87 4899988652 357
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHhCCc--eecC
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSILDGY--EIRG 577 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~lng~--~i~g 577 (773)
++|||+|||...++++|.+.|++.+.=.. +|.|+..+. ..+++|||||+|.++..|..|-+.|-.. .+.|
T Consensus 165 ~RLFiG~IPK~k~keeIlee~~kVteGVv-------dVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwg 237 (506)
T KOG0117|consen 165 CRLFIGNIPKTKKKEEILEEMKKVTEGVV-------DVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWG 237 (506)
T ss_pred ceeEeccCCccccHHHHHHHHHhhCCCee-------EEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecC
Confidence 99999999999999999999999876443 477877664 4688999999999999999998877544 4569
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
+.|.|.||...... +.+ .+..-++|||+||... ++
T Consensus 238 n~~tVdWAep~~e~------------------------------ded-----~ms~VKvLYVRNL~~~--tT-------- 272 (506)
T KOG0117|consen 238 NAITVDWAEPEEEP------------------------------DED-----TMSKVKVLYVRNLMES--TT-------- 272 (506)
T ss_pred CcceeeccCcccCC------------------------------Chh-----hhhheeeeeeeccchh--hh--------
Confidence 99999999843111 111 1223589999999655 33
Q ss_pred HHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 658 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
++.|.++|++||.|++|+..+ .+|||.|.+.++|.+|+..|||..++|..|.|.+..+..
T Consensus 273 -eE~lk~~F~~~G~veRVkk~r----DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 273 -EETLKKLFNEFGKVERVKKPR----DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred -HHHHHHHHHhccceEEeeccc----ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 389999999999999998765 489999999999999999999999999999999966543
No 23
>KOG0148|consensus
Probab=99.96 E-value=2.3e-28 Score=241.54 Aligned_cols=229 Identities=25% Similarity=0.434 Sum_probs=180.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+||..++||+-|..||+..|.|.. ++|+.|
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~--------~k~i~~----------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTK--------TKVIFD----------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhcccccc--------ceeehh-----------------------------------
Confidence 5689999999999999999999999999998 898876
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|+|.++... +....|. .+..-.|++..| .+.. +.
T Consensus 42 e~~v~wa~~p--~nQsk~t---------------------------------~~~hfhvfvgdl-s~eI-~~-------- 76 (321)
T KOG0148|consen 42 ELKVNWATAP--GNQSKPT---------------------------------SNQHFHVFVGDL-SPEI-DN-------- 76 (321)
T ss_pred hhccccccCc--ccCCCCc---------------------------------cccceeEEehhc-chhc-ch--------
Confidence 4566555421 1100000 112335788877 3333 22
Q ss_pred HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
++|++.|.+||.|..+++.. ..++||+||.|-..++|+.||..|||.++++|.|+..++..+.. +..
T Consensus 77 -e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~--------e~n 147 (321)
T KOG0148|consen 77 -EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPS--------EMN 147 (321)
T ss_pred -HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCcc--------ccC
Confidence 88999999999999887763 46899999999999999999999999999999999998776540 000
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~ 529 (773)
.....|.... ......+|+|||+|++.-+|+++|++.|+.||.|.
T Consensus 148 ~~~ltfdeV~----------------------------------NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~- 192 (321)
T KOG0148|consen 148 GKPLTFDEVY----------------------------------NQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQ- 192 (321)
T ss_pred CCCccHHHHh----------------------------------ccCCCCCceEEeCCcCccccHHHHHHhcccCCcce-
Confidence 0000000000 12245789999999999999999999999999999
Q ss_pred ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.|+|..+ +|||||.|.+.|+|..||..+||.+|.|+.++|.|.+-
T Consensus 193 -------EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 193 -------EVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred -------EEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 6999987 78999999999999999999999999999999999984
No 24
>KOG0144|consensus
Probab=99.95 E-value=1.3e-27 Score=249.40 Aligned_cols=308 Identities=20% Similarity=0.300 Sum_probs=222.1
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce-ec
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IR 291 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~-l~ 291 (773)
+..-++||+-+|..++|.||+++|.+||.|.+ |.|++|+.||.++|||||.|.+.++|..|+..|++.. |.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~e--------inl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYE--------INLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeE--------EEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 47789999999999999999999999999999 9999999999999999999999999999999987764 55
Q ss_pred C--eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHH
Q psy2160 292 G--KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTL 369 (773)
Q Consensus 292 g--~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~ 369 (773)
| .+|.|.+|..+... ....+.|||+-|.. ...
T Consensus 104 G~~~pvqvk~Ad~E~er---------------------------------------~~~e~KLFvg~lsK--~~t----- 137 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERER---------------------------------------IVEERKLFVGMLSK--QCT----- 137 (510)
T ss_pred CCCcceeecccchhhhc---------------------------------------cccchhhhhhhccc--ccc-----
Confidence 5 78889877622100 12245688888832 222
Q ss_pred HHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcc-cCC--eeEEEEecCCCcccccch
Q psy2160 370 ILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRW-FGQ--RQITAETWDGKTRYKIQE 443 (773)
Q Consensus 370 ~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~-~~G--r~I~v~~~~~~~~~~~~~ 443 (773)
+.+|+++|++||.|++|.|.. +.++|||||.|.+.+.|..||+.|||.. +.| .+|.|.++|.+..-....
T Consensus 138 ----e~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 138 ----ENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred ----HHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 378999999999999997763 5799999999999999999999999865 444 788999888654211111
Q ss_pred h---HHHHHHHHHH---HHH------Hhhhhh------------------------h----hhh------------hh--
Q psy2160 444 T---AEEREARLKK---WET------FLGKKI------------------------K----VER------------AK-- 469 (773)
Q Consensus 444 ~---~~e~~~r~~~---~~~------~l~~~~------------------------~----~~~------------~~-- 469 (773)
. ....-.++.. |.+ ...... . .+. ..
T Consensus 214 lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s 293 (510)
T KOG0144|consen 214 LQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASS 293 (510)
T ss_pred HHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCC
Confidence 1 1111111111 100 000000 0 000 00
Q ss_pred ---------cccCCCCCC------C--C----CCchH---Hh--------------------------------------
Q psy2160 470 ---------FTMKGEAYD------P--K----LKPKK---KR-------------------------------------- 487 (773)
Q Consensus 470 ---------~~~~G~~~~------p--~----~~~~~---~r-------------------------------------- 487 (773)
.+..|...+ + . ..+-. .+
T Consensus 294 ~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~lt 373 (510)
T KOG0144|consen 294 TQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLT 373 (510)
T ss_pred cccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcccccccccccccCC
Confidence 000000000 0 0 00000 00
Q ss_pred --h------------------------------------hhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160 488 --K------------------------------------KDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529 (773)
Q Consensus 488 --~------------------------------------~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~ 529 (773)
. ..............|||.+||.+.-+.+|...|..||.|.
T Consensus 374 p~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vl- 452 (510)
T KOG0144|consen 374 PFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVL- 452 (510)
T ss_pred ChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHHHHHhcccccee-
Confidence 0 0000011244568899999999999999999999999999
Q ss_pred ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~ 586 (773)
+.++..|..||.+++|+||.|++..+|..||..|||..|++++++|+...
T Consensus 453 -------sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~ 502 (510)
T KOG0144|consen 453 -------SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKR 502 (510)
T ss_pred -------EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeee
Confidence 79999999999999999999999999999999999999999999999766
No 25
>KOG0127|consensus
Probab=99.95 E-value=5.9e-27 Score=250.49 Aligned_cols=307 Identities=23% Similarity=0.284 Sum_probs=209.9
Q ss_pred CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC----CCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKEPEAADACRELLNGRWFG 424 (773)
Q Consensus 349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~----~~~G~afV~F~~~e~A~~Ai~~lng~~~~ 424 (773)
+.+|||++|+- ... .++|.++|+.+|+|..+.+..+ .++||+||.|+-.++++.|+...++..|.
T Consensus 5 g~TlfV~~lp~--~~~---------~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~ 73 (678)
T KOG0127|consen 5 GATLFVSRLPF--SST---------GEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFE 73 (678)
T ss_pred CceEEEecCCC--ccc---------hhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCccc
Confidence 37999999932 222 2889999999999999877642 46899999999999999999999999999
Q ss_pred CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160 425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY 504 (773)
Q Consensus 425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~ 504 (773)
||.|.+.++..+.+.......+..+ .+. +. +........-..+..+|.
T Consensus 74 Gr~l~v~~A~~R~r~e~~~~~e~~~---------veK---------------------~~--~q~~~~k~~v~~~k~rLI 121 (678)
T KOG0127|consen 74 GRILNVDPAKKRARSEEVEKGENKA---------VEK---------------------PI--EQKRPTKAKVDLPKWRLI 121 (678)
T ss_pred ceecccccccccccchhcccccchh---------hhc---------------------cc--ccCCcchhhccCccceEE
Confidence 9999998876554221100000000 000 00 000000001122367899
Q ss_pred EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEE
Q psy2160 505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 584 (773)
Q Consensus 505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~ 584 (773)
|+|||+.+...+|..+|+.||.|. .|.|++...++.+ |||||+|....+|..|++.+||..|.||+|-|.|
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~--------Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVV--------EIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEE--------EEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 999999999999999999999999 6999998885555 9999999999999999999999999999999999
Q ss_pred cccccc--CCcCCC--CCCchhhhHHHHH------------------------HH----HH----HhhhccCCCCccccC
Q psy2160 585 AKFTMK--GEAYDP--KLKPKKKRKKDLE------------------------KL----KK----AQEKLFDWRPDKMRG 628 (773)
Q Consensus 585 a~~~~~--~~~~~~--~~~~~~~k~~~~~------------------------~~----~~----~~~~~~~~~~~~~~~ 628 (773)
|..... ..+... +++.........+ .. .. ..+.....++...++
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 985422 110000 0000000000000 00 00 000000000000000
Q ss_pred --------------CCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec--C--CCCCcEEEEEe
Q psy2160 629 --------------ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH--D--KHPEGVAQIFF 690 (773)
Q Consensus 629 --------------~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~--~--~~~~G~afV~F 690 (773)
......++|||+||+.. .+ +++|.++|++||.|..+.|. . +++.|.|||.|
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD--~t---------EEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~F 341 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFD--TT---------EEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKF 341 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCcc--cc---------HHHHHHHHHhhccceeEEEEeccCCCCcccceEEEe
Confidence 00112589999999765 33 48999999999999987553 2 88999999999
Q ss_pred cCHHHHHHHHHHh-----CC-ceeCCeEEEEEEe
Q psy2160 691 KEPEAADACRELL-----NG-RWFGQRQITAETW 718 (773)
Q Consensus 691 ~~~e~A~~Ai~~l-----nG-r~f~Gr~l~v~~~ 718 (773)
.+..+|..||.+. .| ..++||.|.|...
T Consensus 342 kt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 342 KTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred ccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 9999999999987 34 6789999999763
No 26
>KOG0148|consensus
Probab=99.94 E-value=3.8e-26 Score=225.84 Aligned_cols=174 Identities=20% Similarity=0.279 Sum_probs=147.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..-.|||+-|.+.++-+.|++.|.+||.|. .++|++|..|++++|||||.|.+.++|+.||..|||.-|++|
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS--------~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVS--------DAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccc--------cceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 356899999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.|+-.||..+.....-.+ . ...... .......++||+.|+... +.+
T Consensus 133 ~IRTNWATRKp~e~n~~~---------l---tfdeV~------------NQssp~NtsVY~G~I~~~--lte-------- 178 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKP---------L---TFDEVY------------NQSSPDNTSVYVGNIASG--LTE-------- 178 (321)
T ss_pred eeeccccccCccccCCCC---------c---cHHHHh------------ccCCCCCceEEeCCcCcc--ccH--------
Confidence 999999984321110000 0 011111 122345689999999763 443
Q ss_pred HHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
++||+.|++||.|..|.|+... |++||+|.+.|+|.+||..|||..++|..|+|+.
T Consensus 179 -~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 179 -DLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred -HHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 8999999999999999999865 9999999999999999999999999999999987
No 27
>KOG0123|consensus
Probab=99.94 E-value=4.6e-26 Score=248.08 Aligned_cols=276 Identities=23% Similarity=0.341 Sum_probs=218.2
Q ss_pred CCCccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc
Q psy2160 206 PKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285 (773)
Q Consensus 206 ~~~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l 285 (773)
.-|.+.+| +.|||.||+++++...|.++|+.||.|.+ |++.++.+ | ++|| ||+|.++++|.+||+++
T Consensus 69 im~s~rd~--~~~~i~nl~~~~~~~~~~d~f~~~g~ilS--------~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ 135 (369)
T KOG0123|consen 69 IMWSQRDP--SLVFIKNLDESIDNKSLYDTFSEFGNILS--------CKVATDEN-G-SKGY-FVQFESEESAKKAIEKL 135 (369)
T ss_pred eehhccCC--ceeeecCCCcccCcHHHHHHHHhhcCeeE--------EEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHh
Confidence 45666665 33999999999999999999999999999 99999998 8 9999 99999999999999999
Q ss_pred CCceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccch
Q psy2160 286 DGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDK 365 (773)
Q Consensus 286 ng~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~ 365 (773)
||..+.|++|.|..+....... .+.. . ....-..+++.|.. ....
T Consensus 136 ng~ll~~kki~vg~~~~~~er~--~~~~-----------------------------~-~~~~~t~v~vk~~~--~~~~- 180 (369)
T KOG0123|consen 136 NGMLLNGKKIYVGLFERKEERE--APLG-----------------------------E-YKKRFTNVYVKNLE--EDST- 180 (369)
T ss_pred cCcccCCCeeEEeeccchhhhc--cccc-----------------------------c-hhhhhhhhheeccc--cccc-
Confidence 9999999999997755211100 0000 0 01123357777772 2222
Q ss_pred hhHHHHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccc
Q psy2160 366 DVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQ 442 (773)
Q Consensus 366 d~~~~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~ 442 (773)
...|.+.|..+|.|..+.++. +.+.|++||.|.++++|..|+..|||..+++..+.|.....+.
T Consensus 181 --------~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~----- 247 (369)
T KOG0123|consen 181 --------DEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQKKS----- 247 (369)
T ss_pred --------hHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccccch-----
Confidence 278999999999999998764 4579999999999999999999999999999999886543211
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHH
Q psy2160 443 ETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQ 522 (773)
Q Consensus 443 ~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~ 522 (773)
.+...+..-. ..............+|||.||+..++.+.|...|+
T Consensus 248 -------e~~~~l~~~~----------------------------~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~ 292 (369)
T KOG0123|consen 248 -------EREAELKRKF----------------------------EQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFS 292 (369)
T ss_pred -------hhHHHHhhhh----------------------------HhhhhhccccccccccccccCccccchhHHHHHHh
Confidence 0110000000 00001112244568999999999999999999999
Q ss_pred hcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160 523 KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 523 ~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~ 586 (773)
.||.|. +++|+.+.. |+++|+|||+|.+.++|..|+..+||..+.|++|.|.+++
T Consensus 293 ~~GeI~--------s~kv~~~~~-g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 293 SFGEIT--------SAKVMVDEN-GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred ccccee--------eEEEEeccC-CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 999999 799999987 8999999999999999999999999999999999999887
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=2.5e-25 Score=241.19 Aligned_cols=167 Identities=25% Similarity=0.396 Sum_probs=150.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|++|..||+++|||||+|.++++|..||+.||+..|.++
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~--------v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINT--------CRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 7899999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|+|.+++ +..
T Consensus 178 ~i~V~~a~----------------------------------------------------------p~~----------- 188 (346)
T TIGR01659 178 RLKVSYAR----------------------------------------------------------PGG----------- 188 (346)
T ss_pred eeeeeccc----------------------------------------------------------ccc-----------
Confidence 99995432 000
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
+
T Consensus 189 -~------------------------------------------------------------------------------ 189 (346)
T TIGR01659 189 -E------------------------------------------------------------------------------ 189 (346)
T ss_pred -c------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
....++|||+|||.++|+++|+++|++||.|.
T Consensus 190 -------------------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~----- 221 (346)
T TIGR01659 190 -------------------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIV----- 221 (346)
T ss_pred -------------------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEE-----
Confidence 00124799999999999999999999999998
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEEEEccc
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERAKF 587 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V~~a~~ 587 (773)
.|+|++|..+|.++|||||+|.+.++|..||+.||+..+.| ++|+|.+|..
T Consensus 222 ---~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 222 ---QKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred ---EEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence 79999999899999999999999999999999999999875 7899999884
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=2.8e-24 Score=233.01 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=144.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. +|+|++|..+|+++|||||+|.++++|..||..|||..|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~--------~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPIN--------TCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR 175 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC
Confidence 45679999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
+++|+|.++..... ....++|+|.||+.. +++
T Consensus 176 gr~i~V~~a~p~~~----------------------------------------~~~~~~lfV~nLp~~--vte------ 207 (346)
T TIGR01659 176 NKRLKVSYARPGGE----------------------------------------SIKDTNLYVTNLPRT--ITD------ 207 (346)
T ss_pred Cceeeeeccccccc----------------------------------------ccccceeEEeCCCCc--ccH------
Confidence 99999998862100 011367999999765 443
Q ss_pred HHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEEecCc
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGK 721 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G--r~l~v~~~dgk 721 (773)
++|+++|++||.|..|.|.. +.++|+|||+|.+.++|.+||+.|||..|.| +.|.|.+.+..
T Consensus 208 ---e~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 208 ---DQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred ---HHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 89999999999999987753 4678999999999999999999999999865 78999886543
No 30
>KOG0144|consensus
Probab=99.91 E-value=1.6e-23 Score=218.95 Aligned_cols=161 Identities=22% Similarity=0.315 Sum_probs=134.9
Q ss_pred EEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcc-cCC
Q psy2160 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRW-FGQ 425 (773)
Q Consensus 351 ~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~-~~G 425 (773)
.+||.-++ ..+.+ .||+++|++||.|..|.|.. +.++|||||.|.+.++|.+|+.+||+.. |.|
T Consensus 36 KlfVgqIp--rt~sE---------~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 36 KLFVGQIP--RTASE---------KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPG 104 (510)
T ss_pred hheeccCC--ccccH---------HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCC
Confidence 48999984 44433 89999999999999998764 3579999999999999999999998754 444
Q ss_pred --eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160 426 --RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503 (773)
Q Consensus 426 --r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l 503 (773)
.+|.+.++++.. ......+.|
T Consensus 105 ~~~pvqvk~Ad~E~---------------------------------------------------------er~~~e~KL 127 (510)
T KOG0144|consen 105 MHHPVQVKYADGER---------------------------------------------------------ERIVEERKL 127 (510)
T ss_pred CCcceeecccchhh---------------------------------------------------------hccccchhh
Confidence 677777665431 011246789
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce-ecC--eEE
Q psy2160 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IRG--KKI 580 (773)
Q Consensus 504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~-i~g--~~i 580 (773)
||+-|+..+|+.+|+++|++||.|. +|.|++|+. |.+||||||+|.+.+.|..||+.|||.. ++| .+|
T Consensus 128 Fvg~lsK~~te~evr~iFs~fG~Ie--------d~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PL 198 (510)
T KOG0144|consen 128 FVGMLSKQCTENEVREIFSRFGHIE--------DCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPL 198 (510)
T ss_pred hhhhccccccHHHHHHHHHhhCccc--------hhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCce
Confidence 9999999999999999999999999 799999998 8999999999999999999999999975 566 599
Q ss_pred EEEEcccc
Q psy2160 581 KVERAKFT 588 (773)
Q Consensus 581 ~V~~a~~~ 588 (773)
.|.+|..+
T Consensus 199 VVkFADtq 206 (510)
T KOG0144|consen 199 VVKFADTQ 206 (510)
T ss_pred EEEecccC
Confidence 99998643
No 31
>KOG1190|consensus
Probab=99.91 E-value=1.1e-22 Score=211.47 Aligned_cols=435 Identities=19% Similarity=0.242 Sum_probs=266.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-----
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY----- 288 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~----- 288 (773)
.+.-|.++|||.++||.||..++.+||.|.. +.+.+.+ + .||++|.+.++|.. +.+..
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn--------~~~lkGk----n--QAflem~d~~sAvt---mv~~y~~~~p 89 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTN--------LLMLKGK----N--QAFLEMADEESAVT---MVNYYTSVTP 89 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceee--------eeeeccc----h--hhhhhhcchhhhhh---eeecccccCc
Confidence 4578999999999999999999999999997 7777643 3 79999999988754 33333
Q ss_pred eecCeEEEEEeecccccCCCCCCCCchhhhhHHH-HHHHHHHHhhhccCCC-CccCC--CCCCCCcEEEEecCCCccccc
Q psy2160 289 EIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKD-LEKLKKAQEKLFDWRP-DKMRG--ERSKNESVIIVKNLFDPALFD 364 (773)
Q Consensus 289 ~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~-~~~~~k~~~k~~~~~~-~~~~~--~~~~~~~~v~l~Nl~~p~~~~ 364 (773)
.++|++|.|+++...+-.....|. ..+.+. .......++-...... ....+ ..+..--.+++.||+.|-.+
T Consensus 90 ~lr~~~~yiq~sn~~~lkt~s~p~----q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVsl- 164 (492)
T KOG1190|consen 90 VLRGQPIYIQYSNHSELKTDSQPN----QIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSL- 164 (492)
T ss_pred cccCcceeehhhhHHHHhccCchh----hhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEH-
Confidence 378999999886643211101111 011110 0000001111000001 00001 11222235788999888775
Q ss_pred hhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCCc---cc
Q psy2160 365 KDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGKT---RY 439 (773)
Q Consensus 365 ~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~~---~~ 439 (773)
+-|...|++||.|.+|..+.++..--|.|+|.+++.|..|-..|+|+.+.. ..|++.+..-.. +|
T Consensus 165 ----------DVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKy 234 (492)
T KOG1190|consen 165 ----------DVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKY 234 (492)
T ss_pred ----------HHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeec
Confidence 559999999999999999988766679999999999999999999998754 344443321110 11
Q ss_pred ccchhHHHHHH--HHHHHHHHhhhhhhhhh-hhcccCCCCCCCCCCchHHhhhhH--hhhhcCCCCCEEEEcCCCC-CCC
Q psy2160 440 KIQETAEEREA--RLKKWETFLGKKIKVER-AKFTMKGEAYDPKLKPKKKRKKDL--EKLKKAQENTKVYVSNLPL-DLT 513 (773)
Q Consensus 440 ~~~~~~~e~~~--r~~~~~~~l~~~~~~~~-~~~~~~G~~~~p~~~~~~~r~~~~--~~~~~~~~~~~l~V~nLp~-~~t 513 (773)
......+-... ........++....... ......| .|...+..-..... +.......++.|.|.||.. .+|
T Consensus 235 nndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g---~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT 311 (492)
T KOG1190|consen 235 NNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHG---APLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVT 311 (492)
T ss_pred cccccccccCCCCCCCccccccchhhhccccccccccC---CcccCCccchhhcccccccccCCCceEEEEecCchhccc
Confidence 10000000000 00000000000000000 0111111 11111111110000 1111111378899999954 599
Q ss_pred HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCC-
Q psy2160 514 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE- 592 (773)
Q Consensus 514 ~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~- 592 (773)
.+-|..+|+-||.|. +|+|+.+. +--|+|+|.+...|+.|+..|+|..+.|++|+|.+++.+.-.-
T Consensus 312 ~d~LftlFgvYGdVq--------RVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 312 PDVLFTLFGVYGDVQ--------RVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hhHHHHHHhhhcceE--------EEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 999999999999999 89999885 4579999999999999999999999999999999998652110
Q ss_pred ---cCCCCCCchhhhHHHHHHHHHHhhhccCCC-C-ccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh
Q psy2160 593 ---AYDPKLKPKKKRKKDLEKLKKAQEKLFDWR-P-DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS 667 (773)
Q Consensus 593 ---~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~ 667 (773)
.-+....+. -....+.... + .......-+++.++.+.|++.. +. +++|+..|.
T Consensus 379 ~egq~d~glT~d-----------y~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~s--vs---------ee~lk~~f~ 436 (492)
T KOG1190|consen 379 REGQEDQGLTKD-----------YGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPS--VS---------EEDLKNLFQ 436 (492)
T ss_pred CCCCcccccccc-----------CCCCchhhccCcccccccccCCchhheeeccCCcc--cc---------hhHHHHhhh
Confidence 000000000 0000000000 0 0001112356789999999766 44 389999999
Q ss_pred cCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q psy2160 668 KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW 718 (773)
Q Consensus 668 ~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~ 718 (773)
.-|.+.+...+-...+-+|.+.+.+.|+|..|+-.|++..++ +..|+|+|-
T Consensus 437 ~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 437 EPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred cCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 999776655554445679999999999999999999999997 559999984
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.91 E-value=2.5e-23 Score=236.55 Aligned_cols=177 Identities=20% Similarity=0.293 Sum_probs=147.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. +|+|+.|+.+|+++|||||+|.+.++|.+|+..|||..|.|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~--------sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~G 176 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG 176 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEE--------EEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEec
Confidence 4568999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
+.|+|.+......... ..++. .......++|||.||+.. +++
T Consensus 177 R~IkV~rp~~~p~a~~------------------------~~~~~-----~~~~~~~~rLfVgnLp~~--vte------- 218 (612)
T TIGR01645 177 RNIKVGRPSNMPQAQP------------------------IIDMV-----QEEAKKFNRIYVASVHPD--LSE------- 218 (612)
T ss_pred ceeeeccccccccccc------------------------ccccc-----cccccccceEEeecCCCC--CCH-------
Confidence 9999986542110000 00000 000123478999999654 443
Q ss_pred HHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 658 YQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
++|+++|++||.|.+|.|.. +.++|||||.|.+.++|.+||..|||..++|+.|.|.+.-...
T Consensus 219 --edLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 219 --TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred --HHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 89999999999999998864 4578999999999999999999999999999999998866544
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=6e-23 Score=234.38 Aligned_cols=212 Identities=27% Similarity=0.401 Sum_probs=161.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||..+|+++|.++|+.||.|.. |.|+++..+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~--------v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~ 256 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIED--------VQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR 256 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE
Confidence 5799999999999999999999999999998 99999999889999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCch-----hhhhHHHHHHHHHHHhhhccCC-------------------------------
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKP-----KKKRKKDLEKLKKAQEKLFDWR------------------------------- 337 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~-----~~~~~k~~~~~~k~~~k~~~~~------------------------------- 337 (773)
+|.|.+|............... .............+..++..+.
T Consensus 257 ~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (457)
T TIGR01622 257 PIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIP 336 (457)
T ss_pred EEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccc
Confidence 9999997632111000000000 0000000000001111111111
Q ss_pred ------------CCccC--CCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEE
Q psy2160 338 ------------PDKMR--GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403 (773)
Q Consensus 338 ------------~~~~~--~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV 403 (773)
..... .......++|+|.||+.+.+ ..++.+..++.+||+++|++||.|..|.+..+.+.|++||
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~-~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV 415 (457)
T TIGR01622 337 SRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPAT-EEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYL 415 (457)
T ss_pred ccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcc-cccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEE
Confidence 00000 00124678999999998865 5667899999999999999999999999988888999999
Q ss_pred EecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 404 FFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 404 ~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
+|.+.++|.+|+..|||++|+|+.|.+.++.
T Consensus 416 ~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 416 KFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred EECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999999999999999999999999999875
No 34
>KOG0110|consensus
Probab=99.90 E-value=1.2e-23 Score=232.58 Aligned_cols=289 Identities=22% Similarity=0.307 Sum_probs=210.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..+-|+|+|||..+..++|..+|..||.|.. |.|+ +. |. .|+|.|.++.+|..|++.|..+.+...
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~r--------vllp--~~-G~---~aiv~fl~p~eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGR--------VLLP--PG-GT---GAIVEFLNPLEARKAFRKLAYSRFKSA 449 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccce--------eecC--cc-cc---eeeeeecCccchHHHHHHhchhhhccC
Confidence 5689999999999999999999999999997 6443 43 44 499999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCc-----hhhh-hHHHHHHHHHHHhhhccCCCC--ccC----CCCCC-CCcEEEEecCCCc
Q psy2160 294 KIKVERAKFTMKGEAYDPKLK-----PKKK-RKKDLEKLKKAQEKLFDWRPD--KMR----GERSK-NESVIIVKNLFDP 360 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~-----~~~~-~~k~~~~~~k~~~k~~~~~~~--~~~----~~~~~-~~~~v~l~Nl~~p 360 (773)
+|.+.++........ |... +... ......+. ...+....-+.+ ... ..... ....+|++|+.-.
T Consensus 450 plyle~aP~dvf~~~--pka~~~~~e~~~~~ee~~~Er~-s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~ 526 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTED--PKADDLSAESRSKMEENPSERV-SAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFD 526 (725)
T ss_pred ccccccChhhhccCC--ccccccccccccccccCcceec-ccccccccccCCccccccchhhhhccccchhhhhhcCCcc
Confidence 999988764333311 1100 0000 00000000 000111111111 000 00111 1222999999322
Q ss_pred cccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC-------CCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEec
Q psy2160 361 ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH-------PEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW 433 (773)
Q Consensus 361 ~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~-------~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~ 433 (773)
+. .+++...|.+.|.|..+.|.... +.|+|||+|.++++|+.|+..|+|..+.|+.|.+.+.
T Consensus 527 Tt-----------~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 527 TT-----------LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred cc-----------hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 22 38899999999999999776322 4599999999999999999999999999999999876
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCC
Q psy2160 434 DGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLT 513 (773)
Q Consensus 434 ~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t 513 (773)
..+..- ..| +. .......+.|.|+|||+..+
T Consensus 596 ~~k~~~--------------------------------~~g----K~-------------~~~kk~~tKIlVRNipFeAt 626 (725)
T KOG0110|consen 596 ENKPAS--------------------------------TVG----KK-------------KSKKKKGTKILVRNIPFEAT 626 (725)
T ss_pred cCcccc--------------------------------ccc----cc-------------cccccccceeeeeccchHHH
Confidence 511100 000 00 01122368999999999999
Q ss_pred HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 514 QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 514 ~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
..+|+.+|..||.|. +|+|+.-...+.++|||||.|.++.+|.+|+..|.++.+.||.|.++||+.
T Consensus 627 ~rEVr~LF~aFGqlk--------svRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 627 KREVRKLFTAFGQLK--------SVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHHHHHHHhccccee--------eeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 999999999999999 799988755577899999999999999999999999999999999999994
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.90 E-value=1.8e-22 Score=233.69 Aligned_cols=200 Identities=24% Similarity=0.322 Sum_probs=156.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||..+|+++|.++|+.||.|.. +.|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~ 365 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKA--------FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN 365 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 5689999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|.+|............... .. .......+....+ ......+++|+|.||+.+.++.++ +.+.+|
T Consensus 366 ~l~v~~a~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--------~~~~~~s~v~~l~N~~~~~~l~~d-~~~~~~ 432 (509)
T TIGR01642 366 KLHVQRACVGANQATIDTSNGM--AP--VTLLAKALSQSIL--------QIGGKPTKVVQLTNLVTGDDLMDD-EEYEEI 432 (509)
T ss_pred EEEEEECccCCCCCCccccccc--cc--cccccccchhhhc--------cccCCCceEEEeccCCchhHhcCc-chHHHH
Confidence 9999998754322100000000 00 0000000000000 011234689999999888776544 345678
Q ss_pred HHHHHHHhhccCCEEEEEeeCC-------CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 374 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~-------~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
.++|+++|++||.|..|.|+.. ...|+|||+|.+.++|.+|+..|||+.|+|+.|.+.+++
T Consensus 433 ~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 433 YEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 8999999999999999988742 236899999999999999999999999999999999875
No 36
>KOG0120|consensus
Probab=99.89 E-value=3.4e-22 Score=219.54 Aligned_cols=197 Identities=26% Similarity=0.401 Sum_probs=162.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..+.+||+|||..+++.++.++...||.+. ...++.|..+|.++||||++|.++.....|+..|||+.++++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk--------~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLK--------AFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccch--------hheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 457899999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.|.|+.|-...+........... ...-+.. .+......++.+|++.||.++.++. |.+.+.+|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~-----~~~~i~~-----------~~~q~~g~~t~Vl~L~n~Vt~deLk-dd~EyeeI 422 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQS-----QVPGIPL-----------LMTQMAGIPTEVLCLTNVVTPDELK-DDEEYEEI 422 (500)
T ss_pred eeEeehhhccchhccccCCcccc-----ccccchh-----------hhcccCCCcchhhhhhhcCCHHHhc-chHHHHHH
Confidence 99999987543321111110000 0000000 0012234568999999999998887 56779999
Q ss_pred HHHHHHHHhcCCceeEEEecCC-------CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160 659 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 720 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~~-------~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg 720 (773)
.++|+.+|++||.|.+|.|++. -..|.+||+|++.+++.+|+.+|+||.|+||.|.++|||.
T Consensus 423 lEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 423 LEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 9999999999999999998763 2358899999999999999999999999999999999985
No 37
>KOG4212|consensus
Probab=99.88 E-value=2.7e-21 Score=201.96 Aligned_cols=244 Identities=18% Similarity=0.207 Sum_probs=182.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHh-hcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQ-KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs-~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..+.|||+|||+++.-.+|+++|. +.|.|.. |.|..|.. |+++|+|.|+|.++|.+++|++.||.+.+.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~y--------veLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEY--------VELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNG 113 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEe--------eeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccC
Confidence 566799999999999999999998 8899999 99999999 9999999999999999999999999999999
Q ss_pred eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160 293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 372 (773)
Q Consensus 293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~e 372 (773)
|+|.|.--....... .+...+...++|+.++-...-.
T Consensus 114 R~l~vKEd~d~q~~~----------------------------------~~~~~r~g~~~f~~~~~~q~G~--------- 150 (608)
T KOG4212|consen 114 RELVVKEDHDEQRDQ----------------------------------YGRIVRDGGGGFGGGGGVQGGN--------- 150 (608)
T ss_pred ceEEEeccCchhhhh----------------------------------hhheeeccCcccccCcceeccc---------
Confidence 999994321100000 0001233445666666221111
Q ss_pred HHHHHHHHhhccCCEEEEEe---eCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 373 YQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 373 i~edL~e~f~k~G~V~~V~i---~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
..|...|+--|.+.+-.+ .|+.+++..++.|...-.+..++..+++....-|+++. +
T Consensus 151 --~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h~-f----------------- 210 (608)
T KOG4212|consen 151 --GGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLHI-F----------------- 210 (608)
T ss_pred --ccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhhhccC-C-----------------
Confidence 234445555554432222 24567888999999888888887766654433333332 0
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~ 529 (773)
.++....+||.||...+....|+++|.-.|.|.
T Consensus 211 ----------------------------------------------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~- 243 (608)
T KOG4212|consen 211 ----------------------------------------------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQ- 243 (608)
T ss_pred ----------------------------------------------CCCccceeeeeccccccchHHHHHHhccceeee-
Confidence 022356899999999999999999999999998
Q ss_pred ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEE
Q psy2160 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 584 (773)
Q Consensus 530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~ 584 (773)
.|-+-.|+. |.++|+|.|+|..+-.|..||..|++.-+..+++.+.+
T Consensus 244 -------~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 244 -------SVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred -------eeceeeccc-cccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 789999988 79999999999999999999999997666666666554
No 38
>KOG0147|consensus
Probab=99.87 E-value=9.1e-22 Score=212.78 Aligned_cols=219 Identities=24% Similarity=0.394 Sum_probs=162.3
Q ss_pred CCCCCCccCCC---CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHH
Q psy2160 203 PEPPKWFDIGE---ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279 (773)
Q Consensus 203 ~~~~~~~~~~~---~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~ 279 (773)
+.-..|++... ...+|||+||..++|++.|+.+|..||.|.. |.+.+|..||.++||+||+|.+.++|.
T Consensus 263 a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~--------v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 263 ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIEN--------VQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred HhccccccccccccchhhhhhcccccCchHHHHhhhccCccccee--------eeeccccccccccCcceEEEecHHHHH
Confidence 33345665432 3334999999999999999999999999998 999999988999999999999999999
Q ss_pred HHHHHcCCceecCeEEEEEeecccccCCC-------CC-------CCCchhhhhHHHHHHHH------------------
Q psy2160 280 LALSILDGYEIRGKKIKVERAKFTMKGEA-------YD-------PKLKPKKKRKKDLEKLK------------------ 327 (773)
Q Consensus 280 ~Al~~lng~~l~g~~I~V~~A~~~~k~~~-------~~-------p~~~~~~~~~k~~~~~~------------------ 327 (773)
.|+..|||.+|.|+.|+|........... .| +..... +.+-..++.
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g--~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGG--RNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhcccccccccc--HHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999999999999999976553222110 00 110000 000000000
Q ss_pred -HHHhhhccCCC--CccCCCCC-------CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCC
Q psy2160 328 -KAQEKLFDWRP--DKMRGERS-------KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 397 (773)
Q Consensus 328 -k~~~k~~~~~~--~~~~~~~~-------~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~ 397 (773)
++.... ..++ ......+. ..+.|+.|+|||+|.+ ++.|++..+|++||.++|++||.|.+|.+..+ +
T Consensus 413 ~~~~~~~-~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpst-ete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s 489 (549)
T KOG0147|consen 413 AKLASAA-QFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPST-ETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-S 489 (549)
T ss_pred cccchHH-hhcCCcCccccCccccccccCCccHHHHHhhcCCccc-ccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-C
Confidence 000000 0000 00000112 5678899999999987 55699999999999999999999999987654 4
Q ss_pred CeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 398 ~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
.|++||+|.+.+.|..|+..|||+||.|+.|.+.+..
T Consensus 490 ~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 490 AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 5999999999999999999999999999999998753
No 39
>KOG0131|consensus
Probab=99.85 E-value=7.3e-21 Score=178.78 Aligned_cols=166 Identities=25% Similarity=0.367 Sum_probs=142.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
....+|||+||+..++++.|.++|-++|+|. ++++.+|..+...+|||||+|.++|+|+-||+.||...+.|
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv--------~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg 78 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVV--------NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG 78 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCcee--------eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC
Confidence 4568999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
++|+|..|....+. ..-+.+++|+||.. ++++
T Consensus 79 rpIrv~kas~~~~n---------------------------------------l~vganlfvgNLd~--~vDe------- 110 (203)
T KOG0131|consen 79 RPIRVNKASAHQKN---------------------------------------LDVGANLFVGNLDP--EVDE------- 110 (203)
T ss_pred ceeEEEeccccccc---------------------------------------ccccccccccccCc--chhH-------
Confidence 99999988721110 01136799999954 3553
Q ss_pred HHHHHHHHHhcCCceeEE-Ee-cC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 658 YQQDLREECSKCGHVKKV-VL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v-~i-~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
..|.+.|+.||.+.+. .| ++ ++++|++||.|.+.+++.+|+.+|||..++.|+|.|+|...+
T Consensus 111 --~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 111 --KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred --HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 7899999999998863 22 21 688999999999999999999999999999999999995443
No 40
>KOG0131|consensus
Probab=99.82 E-value=3.6e-20 Score=174.15 Aligned_cols=165 Identities=27% Similarity=0.394 Sum_probs=141.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
+..+|||+||+..+|++.|.++|-++|+|.. |+|++|.-|...+|||||+|.++|+|+-||+.||.-.|.|+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~--------i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr 79 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVN--------LHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR 79 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceee--------eecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc
Confidence 6789999999999999999999999999998 99999999899999999999999999999999998889999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|+|..|....+ . ...+..++|+|| .| +.++
T Consensus 80 pIrv~kas~~~~-n--------------------------------------l~vganlfvgNL-d~-~vDe-------- 110 (203)
T KOG0131|consen 80 PIRVNKASAHQK-N--------------------------------------LDVGANLFVGNL-DP-EVDE-------- 110 (203)
T ss_pred eeEEEecccccc-c--------------------------------------cccccccccccc-Cc-chhH--------
Confidence 999987761110 0 223457999999 45 3343
Q ss_pred HHHHHHHhhccCCEEEE---Ee-eC-CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160 374 QQDLREECSKCGHVKKV---VL-HD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 436 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V---~i-~d-~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~ 436 (773)
..|.+.|+.||.+... .. .+ +++.|++||.|.+.+.+.+|+..|||..+..|+|.+.++..+
T Consensus 111 -~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 111 -KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred -HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 6799999999998752 21 12 578999999999999999999999999999999999987544
No 41
>KOG1456|consensus
Probab=99.76 E-value=4.8e-16 Score=160.30 Aligned_cols=406 Identities=16% Similarity=0.165 Sum_probs=245.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--eec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l~ 291 (773)
.+--|.|++|-..+++.+|.+..+.||.|.. |.++.. +..|+|+|.+.+.|..++...-.. .+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~y--------vt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAY--------VTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEE--------EEeccc------cceeeeeeccccchhhheehhccCccccc
Confidence 5678999999999999999999999999986 444432 347999999999999998643222 234
Q ss_pred CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHH
Q psy2160 292 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 371 (773)
Q Consensus 292 g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ 371 (773)
|..-.+.++..+- +.. +.........+|++.-| .|.-..+
T Consensus 96 gq~Al~NyStsq~----------------------------i~R-----~g~es~~pN~VLl~TIl-Np~YpIt------ 135 (494)
T KOG1456|consen 96 GQQALFNYSTSQC----------------------------IER-----PGDESATPNKVLLFTIL-NPQYPIT------ 135 (494)
T ss_pred Cchhhcccchhhh----------------------------hcc-----CCCCCCCCCeEEEEEee-cCccccc------
Confidence 4443332221100 000 00111233444444333 3322111
Q ss_pred HHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC--CeeEEEEecCCCcccccchhHHHHH
Q psy2160 372 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG--QRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 372 ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~--Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
-+-|..+|...|.|.+|.|+.++ --.|.|+|.+.+.|++|-..|||.-+. --.|+++++.+..-.......+
T Consensus 136 --vDVly~Icnp~GkVlRIvIfkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~D--- 209 (494)
T KOG1456|consen 136 --VDVLYTICNPQGKVLRIVIFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKD--- 209 (494)
T ss_pred --hhhhhhhcCCCCceEEEEEEecc-ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCc---
Confidence 15699999999999999999762 345999999999999999999998763 3667777765432111110000
Q ss_pred HHHHHHHHHhhhh------hhh-----hhhhc-----cc-CC-------C-CCCCC-CCchHHhhh-----hHhhhhcCC
Q psy2160 450 ARLKKWETFLGKK------IKV-----ERAKF-----TM-KG-------E-AYDPK-LKPKKKRKK-----DLEKLKKAQ 498 (773)
Q Consensus 450 ~r~~~~~~~l~~~------~~~-----~~~~~-----~~-~G-------~-~~~p~-~~~~~~r~~-----~~~~~~~~~ 498 (773)
.|.-.+... +.. .++.+ +. .| . .-.|. ..|...+.. ...+.....
T Consensus 210 ----twDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~ 285 (494)
T KOG1456|consen 210 ----TWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGA 285 (494)
T ss_pred ----cccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCC
Confidence 011000000 000 00000 00 00 0 00111 111111111 111223455
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
+.+.+.|.+|... ++-+.|..+|..||.|. +|++++-. .|.|+|++.+...+++|+..||+..+.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~--------rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG 352 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVE--------RVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFG 352 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCcee--------eEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCcccc
Confidence 7799999999766 67899999999999999 89999775 6899999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
.+|.|..++...-.. .++-+-+.-. -..+........-+.-...........++++|...|.|.. +++
T Consensus 353 ~kl~v~~SkQ~~v~~-~~pflLpDgS--pSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~--vtE------- 420 (494)
T KOG1456|consen 353 GKLNVCVSKQNFVSP-VQPFLLPDGS--PSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLG--VTE------- 420 (494)
T ss_pred ceEEEeecccccccc-CCceecCCCC--cchhhcccccccccCChhHhhcccccCCcceeEEecCCCc--cCH-------
Confidence 999999887431110 0110000000 0000000000000000000011123456899999998654 554
Q ss_pred HHHHHHHHHhcCC-ceeEEEecCCCC--CcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160 658 YQQDLREECSKCG-HVKKVVLHDKHP--EGVAQIFFKEPEAADACRELLNGRWFGQ 710 (773)
Q Consensus 658 l~edl~~~f~~fG-~V~~v~i~~~~~--~G~afV~F~~~e~A~~Ai~~lnGr~f~G 710 (773)
+.|.++|...+ .-++|.|++..+ .--+.++|++.++|..|+..+|...+.|
T Consensus 421 --e~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 421 --EQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred --HHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccC
Confidence 78888887665 356788887332 2457899999999999999999988864
No 42
>KOG0109|consensus
Probab=99.75 E-value=4.7e-18 Score=170.30 Aligned_cols=146 Identities=24% Similarity=0.357 Sum_probs=130.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
..|||+|||..+++.+|+.+|++||.|. .|.|+ +.||||..++...|..||+.|||..|.|..|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl--------ECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nI 66 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL--------ECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNI 66 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE--------eeeee--------cccceEEeecccccHHHHhhcccceecceEE
Confidence 4799999999999999999999999999 58888 4589999999999999999999999999999
Q ss_pred EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHH
Q psy2160 581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 660 (773)
Q Consensus 581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~e 660 (773)
.|+.++.. .+.+..|.|.|+... ... .
T Consensus 67 nVeaSksK------------------------------------------sk~stkl~vgNis~t--ctn---------~ 93 (346)
T KOG0109|consen 67 NVEASKSK------------------------------------------SKASTKLHVGNISPT--CTN---------Q 93 (346)
T ss_pred EEEecccc------------------------------------------CCCccccccCCCCcc--ccC---------H
Confidence 99988832 123477999999544 333 7
Q ss_pred HHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEec
Q psy2160 661 DLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 719 (773)
Q Consensus 661 dl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~d 719 (773)
+||..|++||.|+.+.|.. +++||+|.-.++|..||+.|||+.|.|++++|+.--
T Consensus 94 ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 94 ELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred HHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 9999999999999998877 789999999999999999999999999999999743
No 43
>KOG0146|consensus
Probab=99.75 E-value=1.9e-17 Score=163.68 Aligned_cols=83 Identities=19% Similarity=0.426 Sum_probs=78.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
.....|+|||..||...++.+|..+|-.||.|. +.+|+.|+.|+.+++||||.|+++.+|+.||..|||+.|
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhiv--------SaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI 352 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIV--------SAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI 352 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhcccccee--------eeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh
Confidence 356789999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred cCeEEEEEEcc
Q psy2160 576 RGKKIKVERAK 586 (773)
Q Consensus 576 ~g~~i~V~~a~ 586 (773)
+-++|+|+.-.
T Consensus 353 GMKRLKVQLKR 363 (371)
T KOG0146|consen 353 GMKRLKVQLKR 363 (371)
T ss_pred hhhhhhhhhcC
Confidence 99999998755
No 44
>KOG1190|consensus
Probab=99.72 E-value=4.4e-16 Score=162.56 Aligned_cols=311 Identities=20% Similarity=0.231 Sum_probs=199.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcce-EEEEEecChHHHHHHHHHcCCceec-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG-DALCTYIKKESVDLALSILDGYEIR- 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG-~AfV~F~~~esA~~Al~~lng~~l~- 291 (773)
.--+++|.|+-+.+|-+-|+.+|++||.|.. |.-.. ++.| .|+|.|.+.++|..|-..|+|..|.
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlK--------IiTF~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyn 215 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLK--------IITFT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYN 215 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEE--------EEEEe-----cccchhhhhhccchhhHHHHHHhccCCcccC
Confidence 3457789999999999999999999999986 43332 2233 4999999999999999999999884
Q ss_pred C-eEEEEEeecccccCCCCC---------CCCchhhhhHHHHHHHHHHHhhhccCC------CCc------------cCC
Q psy2160 292 G-KKIKVERAKFTMKGEAYD---------PKLKPKKKRKKDLEKLKKAQEKLFDWR------PDK------------MRG 343 (773)
Q Consensus 292 g-~~I~V~~A~~~~k~~~~~---------p~~~~~~~~~k~~~~~~k~~~k~~~~~------~~~------------~~~ 343 (773)
| ..|+|.+++...-...|+ |..... .. ..-+..+-...+.-. |.. ..-
T Consensus 216 gcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~g-d~---~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~ 291 (492)
T KOG1190|consen 216 GCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVG-DG---QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKI 291 (492)
T ss_pred ceeEEEeehhhcccceeeccccccccccCCCCCCC-cc---ccccchhhhccccccccccCCcccCCccchhhccccccc
Confidence 4 788888776421111111 111000 00 000000000000000 000 000
Q ss_pred CCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF 423 (773)
Q Consensus 344 ~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~ 423 (773)
.....+.+|.+.|+ .+..... +.|..+|+-||.|.+|.|..++. --|.|++.+...|+.|+..|+|..+
T Consensus 292 ~~~~~n~vllvsnl-n~~~VT~---------d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l 360 (492)
T KOG1190|consen 292 ESPSANVVLLVSNL-NEEAVTP---------DVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKL 360 (492)
T ss_pred ccCCCceEEEEecC-chhccch---------hHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhccee
Confidence 01112567888888 3333332 67999999999999999987764 7799999999999999999999999
Q ss_pred CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160 424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503 (773)
Q Consensus 424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l 503 (773)
.|++|++.+..... ..+.. ++..++ .++ .++.++.-.+-++.....-...-++..+|
T Consensus 361 ~gk~lrvt~SKH~~-vqlp~------------------egq~d~-glT---~dy~~spLhrfkkpgsKN~~ni~Ppsatl 417 (492)
T KOG1190|consen 361 YGKKLRVTLSKHTN-VQLPR------------------EGQEDQ-GLT---KDYGNSPLHRFKKPGSKNYQNIFPPSATL 417 (492)
T ss_pred cCceEEEeeccCcc-ccCCC------------------CCCccc-ccc---ccCCCCchhhccCcccccccccCCchhhe
Confidence 99999998754222 11110 000000 000 01111111111111100001122456799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC-eEEEE
Q psy2160 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG-KKIKV 582 (773)
Q Consensus 504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g-~~i~V 582 (773)
++.|+|.++++++|+.+|..-|.... -.+.. ++.+.+|++.+.+.|.|..|+-.+|.+.+++ ..|+|
T Consensus 418 Hlsnip~svsee~lk~~f~~~g~~vk-------afkff-----~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRv 485 (492)
T KOG1190|consen 418 HLSNIPPSVSEEDLKNLFQEPGGQVK-------AFKFF-----QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRV 485 (492)
T ss_pred eeccCCcccchhHHHHhhhcCCceEE-------eeeec-----CCCcceeecccCChhHhhhhccccccccCCCCceEEE
Confidence 99999999999999999999988741 22332 3347799999999999999999999999985 48999
Q ss_pred EEccc
Q psy2160 583 ERAKF 587 (773)
Q Consensus 583 ~~a~~ 587 (773)
++++.
T Consensus 486 SFSks 490 (492)
T KOG1190|consen 486 SFSKS 490 (492)
T ss_pred Eeecc
Confidence 99873
No 45
>KOG4211|consensus
Probab=99.71 E-value=5.2e-16 Score=166.35 Aligned_cols=304 Identities=18% Similarity=0.227 Sum_probs=193.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..--|-+++||++||++||.+||+.|++ .. +.+.+. +|+..|.|||+|.+.+++.+||+ +|...+..|
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I-~~--------~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R 76 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCGI-EN--------LEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR 76 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCce-eE--------EEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence 5567889999999999999999999985 33 455543 49999999999999999999998 788888999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|.|..+.... .+|--.......+...-+|-|+.| |....+
T Consensus 77 YIEVf~~~~~e-----------------------------~d~~~~~~g~~s~~~d~vVRLRGL--Pfscte-------- 117 (510)
T KOG4211|consen 77 YIEVFTAGGAE-----------------------------ADWVMRPGGPNSSANDGVVRLRGL--PFSCTE-------- 117 (510)
T ss_pred eEEEEccCCcc-----------------------------ccccccCCCCCCCCCCceEEecCC--CccCcH--------
Confidence 99997664211 111111111111234678999999 444433
Q ss_pred HHHHHHHhhccCCEEE-EEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCGHVKK-VVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~-V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
+||.++|+..-.|.. |.++ ..++.|-|||+|.+.+.|+.|+.. |...++-|-|.|................
T Consensus 118 -~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~--- 192 (510)
T KOG4211|consen 118 -EDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGD--- 192 (510)
T ss_pred -HHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhhccccc---
Confidence 899999999877776 3233 346889999999999999999985 7788888999886432111000000000
Q ss_pred HHHHHHHHHhh------------hhhhhh---hhhcccCC----CC----------------CCCCCCch--HHhhhhHh
Q psy2160 450 ARLKKWETFLG------------KKIKVE---RAKFTMKG----EA----------------YDPKLKPK--KKRKKDLE 492 (773)
Q Consensus 450 ~r~~~~~~~l~------------~~~~~~---~~~~~~~G----~~----------------~~p~~~~~--~~r~~~~~ 492 (773)
.+...-+.|-. ...... +......| +. -.+.+... ..+.....
T Consensus 193 ~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g 272 (510)
T KOG4211|consen 193 GRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAG 272 (510)
T ss_pred cccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcc
Confidence 00000000000 000000 00000000 00 00000000 00000000
Q ss_pred hh-hcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 493 KL-KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 493 ~~-~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
.. .-......++.++||.+.+..+|..+|+..-.+. |+|-..+. |+.+|-|+|+|.+.++|..|+ .-+
T Consensus 273 ~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~---------v~i~ig~d-Gr~TGEAdveF~t~edav~Am-skd 341 (510)
T KOG4211|consen 273 DYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYR---------VHIEIGPD-GRATGEADVEFATGEDAVGAM-GKD 341 (510)
T ss_pred cccCCCCCCceeeecCCCccCCCcchhhhcCCCCcee---------EEEEeCCC-CccCCcceeecccchhhHhhh-ccC
Confidence 00 1122337899999999999999999999888774 88888776 999999999999999999999 467
Q ss_pred CceecCeEEEEEE
Q psy2160 572 GYEIRGKKIKVER 584 (773)
Q Consensus 572 g~~i~g~~i~V~~ 584 (773)
+..+..+-|.+-.
T Consensus 342 ~anm~hrYVElFl 354 (510)
T KOG4211|consen 342 GANMGHRYVELFL 354 (510)
T ss_pred CcccCcceeeecc
Confidence 7777766655443
No 46
>KOG0124|consensus
Probab=99.70 E-value=7.6e-17 Score=165.35 Aligned_cols=171 Identities=21% Similarity=0.330 Sum_probs=141.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..|+|||+.+.+.+.++.|+..|..||+|. +|.+.-|+.||+++|||||+|+-+|.|+.|++.|||..++||
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIK--------SInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR 183 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIK--------SINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR 183 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcc--------eeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCc
Confidence 468999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.|+|.+...-.... + .+..+.... +.-..|||.-+ +| ++.+
T Consensus 184 NiKVgrPsNmpQAQ-------p------iID~vqeeA----------------k~fnRiYVaSv-Hp-DLSe-------- 224 (544)
T KOG0124|consen 184 NIKVGRPSNMPQAQ-------P------IIDMVQEEA----------------KKFNRIYVASV-HP-DLSE-------- 224 (544)
T ss_pred cccccCCCCCcccc-------h------HHHHHHHHH----------------HhhheEEeeec-CC-CccH--------
Confidence 99999654211100 0 011111110 11246788776 33 2443
Q ss_pred HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
+||+..|+.||.|.+|.+.+ ..++||+||+|.+..+-..||..||-.-+||.-|+|--
T Consensus 225 -~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 225 -TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred -HHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 89999999999999999976 45689999999999999999999999999999999853
No 47
>KOG0120|consensus
Probab=99.68 E-value=2.4e-16 Score=173.73 Aligned_cols=196 Identities=27% Similarity=0.407 Sum_probs=160.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
....+||+|||...+++++.++...||.+.. ..++.|..+|.++||||++|.++.....|+..|||+.+.++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~--------f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKA--------FRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchh--------heeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 6789999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|+.|..........-.... ...... +............++++.||.+|.++. +-+...+|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~---------------~~~~~i-~~~~~q~~g~~t~Vl~L~n~Vt~deLk-dd~EyeeI 422 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQ---------------SQVPGI-PLLMTQMAGIPTEVLCLTNVVTPDELK-DDEEYEEI 422 (500)
T ss_pred eeEeehhhccchhccccCCccc---------------cccccc-hhhhcccCCCcchhhhhhhcCCHHHhc-chHHHHHH
Confidence 9999998743222100000000 000000 000011224567899999999999988 55778899
Q ss_pred HHHHHHHhhccCCEEEEEeeCC-------CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 374 QQDLREECSKCGHVKKVVLHDK-------HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~-------~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
.++++..|++||.|..|.++.. ...|.+||+|.+.++|++|...|+|+.|+||.|.+.|++
T Consensus 423 lEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 423 LEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 9999999999999999988743 257889999999999999999999999999999999986
No 48
>KOG0109|consensus
Probab=99.68 E-value=1.6e-16 Score=159.33 Aligned_cols=147 Identities=23% Similarity=0.297 Sum_probs=129.7
Q ss_pred EEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEE
Q psy2160 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430 (773)
Q Consensus 351 ~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v 430 (773)
-+||.||+.... + .+|+.+|.+||.|..|.|. +.++||+.++...|..||..|||..+.|..|.|
T Consensus 4 KLFIGNLp~~~~--~---------~elr~lFe~ygkVlECDIv----KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 4 KLFIGNLPREAT--E---------QELRSLFEQYGKVLECDIV----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred chhccCCCcccc--h---------HHHHHHHHhhCceEeeeee----cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 389999954433 2 7899999999999999887 678999999999999999999999999999999
Q ss_pred EecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCC
Q psy2160 431 ETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPL 510 (773)
Q Consensus 431 ~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~ 510 (773)
+-...+ ....++|+|+||.+
T Consensus 69 eaSksK------------------------------------------------------------sk~stkl~vgNis~ 88 (346)
T KOG0109|consen 69 EASKSK------------------------------------------------------------SKASTKLHVGNISP 88 (346)
T ss_pred Eecccc------------------------------------------------------------CCCccccccCCCCc
Confidence 753221 23578999999999
Q ss_pred CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160 511 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 588 (773)
Q Consensus 511 ~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~ 588 (773)
.+|.++|+..|++||.+. .|.|+ ++|+||.|...++|..||+.|||++|.|++|+|+.+...
T Consensus 89 tctn~ElRa~fe~ygpvi--------ecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 89 TCTNQELRAKFEKYGPVI--------ECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccCHHHhhhhcccCCce--------eeeee--------cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 999999999999999998 58887 569999999999999999999999999999999987643
No 49
>KOG0146|consensus
Probab=99.62 E-value=5e-15 Score=146.68 Aligned_cols=203 Identities=16% Similarity=0.294 Sum_probs=143.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec-C
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-G 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~-g 577 (773)
..+.|||+-|...-.+++++.+|..||.|. .|.+.+.+. |.++|||||.|.+.-+|+.||..|||..-. |
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~--------e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpG 88 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIE--------ECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPG 88 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcc--------eeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCC
Confidence 457899999999999999999999999999 699999987 899999999999999999999999998654 4
Q ss_pred --eEEEEEEccccccC------------CcCCCC-----------------------------CCchhh-hHHHHHHHHH
Q psy2160 578 --KKIKVERAKFTMKG------------EAYDPK-----------------------------LKPKKK-RKKDLEKLKK 613 (773)
Q Consensus 578 --~~i~V~~a~~~~~~------------~~~~~~-----------------------------~~~~~~-k~~~~~~~~~ 613 (773)
..|.|.+|.-.... .-+.|. +.+... -.-.+.....
T Consensus 89 ASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA 168 (371)
T KOG0146|consen 89 ASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAA 168 (371)
T ss_pred CccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHH
Confidence 57889888633100 001111 000000 0000000000
Q ss_pred Hh------hhccC--------------------------C---------------------------CCcc---------
Q psy2160 614 AQ------EKLFD--------------------------W---------------------------RPDK--------- 625 (773)
Q Consensus 614 ~~------~~~~~--------------------------~---------------------------~~~~--------- 625 (773)
.. ..+.. . .+..
T Consensus 169 ~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~ 248 (371)
T KOG0146|consen 169 LNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYA 248 (371)
T ss_pred HhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhh
Confidence 00 00000 0 0000
Q ss_pred -------------------c---------cCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEe
Q psy2160 626 -------------------M---------RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 677 (773)
Q Consensus 626 -------------------~---------~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i 677 (773)
+ .....+..|+|+|.+||- ++-+ .+|...|-+||.|.+.++
T Consensus 249 g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQ--EFgD---------aEliQmF~PFGhivSaKV 317 (371)
T KOG0146|consen 249 GVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQ--EFGD---------AELIQMFLPFGHIVSAKV 317 (371)
T ss_pred hHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCch--hhcc---------HHHHHHhccccceeeeee
Confidence 0 000114589999999954 4665 789999999999997655
Q ss_pred c--C--CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 678 H--D--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 678 ~--~--~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
+ + +.++.|+||.|.++.+|..||.+|||..++.++|+|..-++|
T Consensus 318 FvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 318 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred eehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 4 3 778899999999999999999999999999999999885544
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=1.6e-14 Score=137.74 Aligned_cols=81 Identities=23% Similarity=0.365 Sum_probs=77.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+.|..||+++|||||+|.+.++|+.||+.||+..|.|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr 104 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD--------AKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR 104 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 6789999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.++..
T Consensus 105 ~l~V~~a~~ 113 (144)
T PLN03134 105 HIRVNPAND 113 (144)
T ss_pred EEEEEeCCc
Confidence 999998763
No 51
>KOG4205|consensus
Probab=99.55 E-value=1.7e-14 Score=152.25 Aligned_cols=171 Identities=26% Similarity=0.403 Sum_probs=144.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||++|+.++|++.|++.|+.||.|.. +.+++|+.||+++||+||+|.+++.+..+|. ..-..|.|+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d--------~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTD--------CVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceee--------EEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence 5699999999999999999999999999998 9999999999999999999999999998886 444557777
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|.+..|.... . .....
T Consensus 76 ~ve~k~av~r~--~----------------------------------------------------~~~~~--------- 92 (311)
T KOG4205|consen 76 SVEPKRAVSRE--D----------------------------------------------------QTKVG--------- 92 (311)
T ss_pred cccceeccCcc--c----------------------------------------------------ccccc---------
Confidence 77775543100 0 00000
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
.+
T Consensus 93 ---------------------~~--------------------------------------------------------- 94 (311)
T KOG4205|consen 93 ---------------------RH--------------------------------------------------------- 94 (311)
T ss_pred ---------------------cc---------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
.....|||++||.++++++|+++|.+||.|.
T Consensus 95 --------------------------------------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~----- 125 (311)
T KOG4205|consen 95 --------------------------------------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVA----- 125 (311)
T ss_pred --------------------------------------------cceeEEEecCcCCCCchHHHhhhhhccceeE-----
Confidence 0135799999999999999999999999888
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.+-++.|..+.+++||+||+|.+++++.+++ ...-+.|.|+.+.|..|..
T Consensus 126 ---~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 126 ---DVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ---eeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence 7899999999999999999999999999998 5888999999999999984
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=3.7e-14 Score=135.28 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=78.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. +|+|+.|..+|+++|||||+|.+.++|+.||+.||+..|.|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVV--------DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4578999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.++..
T Consensus 104 r~l~V~~a~~ 113 (144)
T PLN03134 104 RHIRVNPAND 113 (144)
T ss_pred EEEEEEeCCc
Confidence 9999999873
No 53
>KOG4206|consensus
Probab=99.52 E-value=2e-13 Score=134.13 Aligned_cols=196 Identities=17% Similarity=0.276 Sum_probs=137.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHH----HHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~----~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
++.+|||.||+..+..++|+. +|++||.|. .|....- .+.+|-|||.|.+.+.|-.|+..|+|..
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il--------dI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL--------DISAFKT---PKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeE--------EEEecCC---CCccCceEEEecChhHHHHHHHHhcCCc
Confidence 455999999999999999888 999999997 5665533 5789999999999999999999999999
Q ss_pred ecCeEEEEEEccccccCC-----cCCCCCCchhhhHHHHHHHH-HHhhhccCC--CCcccc----CCCCCCCcEEEEecC
Q psy2160 575 IRGKKIKVERAKFTMKGE-----AYDPKLKPKKKRKKDLEKLK-KAQEKLFDW--RPDKMR----GERSKNESVIIVKNL 642 (773)
Q Consensus 575 i~g~~i~V~~a~~~~~~~-----~~~~~~~~~~~k~~~~~~~~-~~~~~~~~~--~~~~~~----~~~~~~~~~l~ikNl 642 (773)
|.|++|+|++|+.....- .+....++... ....+.. ......... ...... .....+..++++.|+
T Consensus 77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~--~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~ni 154 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKING--EILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNI 154 (221)
T ss_pred ccCchhheecccCccchhhccCceeccccCcccc--ccccccCCcccccccccccccccCCCCccccCCCCceEEEEecC
Confidence 999999999998543211 11111111000 0000000 000000000 000000 112456789999999
Q ss_pred CCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEec
Q psy2160 643 FDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD 719 (773)
Q Consensus 643 ~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~d 719 (773)
|...+ . +.+...|.+|+....|.+.+.. .|+|||+|.+...|..|...|.|..+. ...+.+.|.+
T Consensus 155 P~es~--~---------e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 155 PSESE--S---------EMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred Ccchh--H---------HHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 87633 2 6777788888888888665532 489999999999999999999999887 8888887743
No 54
>KOG1365|consensus
Probab=99.50 E-value=6.7e-13 Score=137.72 Aligned_cols=294 Identities=17% Similarity=0.154 Sum_probs=196.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.++-|-.++||...+..+|..+|+-.-...-. +.|..+.. |+..|.|+|.|.+.|.-++|++ -+...+.++
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg-------~aKOG~~q-grRnge~lvrf~d~e~Rdlalk-Rhkhh~g~r 129 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGG-------RALCLNAQ-GRRNGEALVRFVDPEGRDLALK-RHKHHMGTR 129 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccc-------eeeeehhh-hccccceEEEecCchhhhhhhH-hhhhhccCC
Confidence 77888899999999999999999865444332 56777777 9999999999999999999998 466667889
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCC-CcEEEEecCCCccccchhhHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKN-ESVIIVKNLFDPALFDKDVTLILE 372 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~-~~~v~l~Nl~~p~~~~~d~~~~~e 372 (773)
.|.|-.|....--. +. ...........++. .-.|-+++| |-+...
T Consensus 130 yievYka~ge~f~~-ia------------------------gg~s~e~~~flsk~~qvivRmRGL--Pfdat~------- 175 (508)
T KOG1365|consen 130 YIEVYKATGEEFLK-IA------------------------GGTSNEAAPFLSKENQVIVRMRGL--PFDATA------- 175 (508)
T ss_pred ceeeeccCchhheE-ec------------------------CCccccCCCCCCcccceEEEecCC--CCCcch-------
Confidence 99996655221000 00 00000011111212 234667888 333222
Q ss_pred HHHHHHHHhhccC----C---EEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhH
Q psy2160 373 YQQDLREECSKCG----H---VKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA 445 (773)
Q Consensus 373 i~edL~e~f~k~G----~---V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~ 445 (773)
.++.++|.... . |.-|...|+++.|-|||.|..+++|+.|+.. |...++.|-|.+... +.
T Consensus 176 --~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRS----------Ta 242 (508)
T KOG1365|consen 176 --LDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRS----------TA 242 (508)
T ss_pred --HHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHH----------hH
Confidence 78999996422 2 2234445788999999999999999999985 666777777666321 22
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcC
Q psy2160 446 EEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCG 525 (773)
Q Consensus 446 ~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G 525 (773)
.+-++-+.+... . +.....+.+..|.. +. .......+..+|.+++||+..|.++|..+|..|-
T Consensus 243 aEvqqvlnr~~s---~------pLi~~~~sp~~p~~-p~-------~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa 305 (508)
T KOG1365|consen 243 AEVQQVLNREVS---E------PLIPGLTSPLLPGG-PA-------RLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFA 305 (508)
T ss_pred HHHHHHHHhhcc---c------cccCCCCCCCCCCC-cc-------ccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHh
Confidence 222222211110 0 00000111111211 00 0112234468999999999999999999999886
Q ss_pred cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcc
Q psy2160 526 LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 526 ~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~ 586 (773)
.-.. -..|+|..|.+ |++.|.|||+|.+.++|..|....+.+...++.|.|-.+.
T Consensus 306 ~~i~-----f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 306 TDIR-----FQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhcc-----cceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 5331 01488999987 9999999999999999999999999988889999988765
No 55
>KOG4206|consensus
Probab=99.50 E-value=3.2e-13 Score=132.79 Aligned_cols=194 Identities=19% Similarity=0.335 Sum_probs=132.1
Q ss_pred CccEEEEcCCCCCCCHHHHHH----HHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVE----VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~----~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
.+.+|||.||+..+..++|+. +|+.||.|.. |...+ |.+.+|-|||.|.+.+.|..|+..|+|..
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ild--------I~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfp 76 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILD--------ISAFK---TPKMRGQAFVVFKETEAASAALRALQGFP 76 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEE--------EEecC---CCCccCceEEEecChhHHHHHHHHhcCCc
Confidence 344999999999999999988 9999999987 66664 48899999999999999999999999999
Q ss_pred ecCeEEEEEeecccccCCCCCC-CCchhhhhHHHHHHHHHHHhhh-cc---C-------CCCccCCCCCCCCcEEEEecC
Q psy2160 290 IRGKKIKVERAKFTMKGEAYDP-KLKPKKKRKKDLEKLKKAQEKL-FD---W-------RPDKMRGERSKNESVIIVKNL 357 (773)
Q Consensus 290 l~g~~I~V~~A~~~~k~~~~~p-~~~~~~~~~k~~~~~~k~~~k~-~~---~-------~~~~~~~~~~~~~~~v~l~Nl 357 (773)
|.|++|+|++|+....-....+ .... +.++...+++....+.. .. . .+... ........++++.|+
T Consensus 77 FygK~mriqyA~s~sdii~~~~~~~v~-~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~-~~~~ppn~ilf~~ni 154 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDIIAQAPGTFVE-KEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFL-AQMAPPNNILFLTNI 154 (221)
T ss_pred ccCchhheecccCccchhhccCceecc-ccCccccccccccCCcccccccccccccccCCCCcc-ccCCCCceEEEEecC
Confidence 9999999999985432221100 0000 00000000000000000 00 0 00000 112456778999999
Q ss_pred CCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEe
Q psy2160 358 FDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAET 432 (773)
Q Consensus 358 ~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~ 432 (773)
+ .+.+. +-+...|..|+....|++.... .++|||+|.+...|..|...+.|..+. ...+.+.+
T Consensus 155 P--~es~~---------e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 155 P--SESES---------EMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred C--cchhH---------HHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 4 44332 5566777777777777766543 789999999999999999999887776 56666544
No 56
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=2.8e-13 Score=112.38 Aligned_cols=70 Identities=34% Similarity=0.574 Sum_probs=66.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
|||+|||.++|+++|+++|+.||.|.. +++..+.. +.++|+|||+|.+.++|..|++.|||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~--------~~~~~~~~-~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIES--------IKVMRNSS-GKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEE--------EEEEEETT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccc--------cccccccc-ccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988 99999854 99999999999999999999999999999999986
No 57
>KOG0105|consensus
Probab=99.44 E-value=1.8e-12 Score=122.35 Aligned_cols=171 Identities=20% Similarity=0.252 Sum_probs=127.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++.+.+|.++|.+||.|. .|.|-.-+ ...+||||+|+++-+|..||..-+|..+.|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~--------~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIR--------EIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceE--------EEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcc
Confidence 468999999999999999999999999998 57765443 2578999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcccc-CCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMR-GERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
.|+|+++.-.-....--..-. .-.-..|...... +....+...|+|..||....
T Consensus 74 rLRVEfprggr~s~~~~G~y~---------------gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgS---------- 128 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSSDRRGSYS---------------GGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGS---------- 128 (241)
T ss_pred eEEEEeccCCCcccccccccC---------------CCCCCCCCCCcccCCcccccceeEEEecCCCCCc----------
Confidence 999999873211100000000 0000011111111 12234467899999987765
Q ss_pred HHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC
Q psy2160 658 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 709 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~ 709 (773)
.+||++++.+-|.|.-..+++ .|++.|.|...|+-.-|+..|....|.
T Consensus 129 -WQDLKDHmReaGdvCfadv~r---Dg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 129 -WQDLKDHMREAGDVCFADVQR---DGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred -hHHHHHHHHhhCCeeeeeeec---ccceeeeeeehhhHHHHHHhhcccccc
Confidence 389999999999998776665 379999999999999999999988874
No 58
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=5.2e-13 Score=110.75 Aligned_cols=70 Identities=34% Similarity=0.579 Sum_probs=66.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
|||+|||.++|+++|+++|+.||.|. .+.+..+ .++.++|+|||+|.+.++|..|++.|||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~--------~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIE--------SIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEE--------EEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcc--------ccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998 7999998 4588999999999999999999999999999999986
No 59
>KOG0105|consensus
Probab=99.41 E-value=3.7e-12 Score=120.31 Aligned_cols=171 Identities=21% Similarity=0.273 Sum_probs=125.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++.+.+|.++|.+||.|.. |-|-.. -..-+||||+|+++.+|+-||.--||+.+.|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~--------ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~ 73 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIRE--------IELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGC 73 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEE--------EEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcc
Confidence 5689999999999999999999999999997 776433 23457999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCC-CCCCCcEEEEecCCCccccchhhHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILE 372 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~-~~~~~~~v~l~Nl~~p~~~~~d~~~~~e 372 (773)
.|+|+++.-.-.+. +.--.. ..-.--+|.....++. .......|+|.+|+....+
T Consensus 74 rLRVEfprggr~s~--~~~G~y-------------~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSW--------- 129 (241)
T KOG0105|consen 74 RLRVEFPRGGRSSS--DRRGSY-------------SGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW--------- 129 (241)
T ss_pred eEEEEeccCCCccc--cccccc-------------CCCCCCCCCCCcccCCcccccceeEEEecCCCCCch---------
Confidence 99999987421110 000000 0000001222222222 2234556999999655554
Q ss_pred HHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160 373 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 424 (773)
Q Consensus 373 i~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~ 424 (773)
+||++++.+.|.|--..++ ..|++.|.|...++..-|+..|....|.
T Consensus 130 --QDLKDHmReaGdvCfadv~---rDg~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 130 --QDLKDHMREAGDVCFADVQ---RDGVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred --HHHHHHHHhhCCeeeeeee---cccceeeeeeehhhHHHHHHhhcccccc
Confidence 7899999999998765554 3679999999999999999999877664
No 60
>KOG0121|consensus
Probab=99.40 E-value=5.2e-13 Score=118.93 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+||+..+||+.|.++|++||.|.. |.|=.|+.|..+.|||||+|.+.++|..|++.++++.+..+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irr--------iiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr 106 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRR--------IIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR 106 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchhe--------eEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc
Confidence 7799999999999999999999999999998 99999999899999999999999999999999999999999
Q ss_pred EEEEEe
Q psy2160 294 KIKVER 299 (773)
Q Consensus 294 ~I~V~~ 299 (773)
+|+|.+
T Consensus 107 ~ir~D~ 112 (153)
T KOG0121|consen 107 PIRIDW 112 (153)
T ss_pred ceeeec
Confidence 999954
No 61
>KOG0122|consensus
Probab=99.40 E-value=9.9e-13 Score=129.75 Aligned_cols=83 Identities=25% Similarity=0.376 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|.|.|||.++++.+|.++|.+||.|. +|.|.+|..||.++|||||+|.+.++|.+||..|||+-+.
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~--------rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd 257 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPIT--------RVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD 257 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccc--------eeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc
Confidence 34678999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
.-.|+|+|++.
T Consensus 258 ~LILrvEwskP 268 (270)
T KOG0122|consen 258 NLILRVEWSKP 268 (270)
T ss_pred eEEEEEEecCC
Confidence 99999999984
No 62
>KOG0122|consensus
Probab=99.39 E-value=9.6e-13 Score=129.83 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=78.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
+.++|-|+|||.++++++|+++|.+||.|.+ |.|.+|+.||.++|||||.|.+.++|.+||..|||.-+..-
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r--------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L 259 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR--------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL 259 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce--------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE
Confidence 7899999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
-|+|+++++
T Consensus 260 ILrvEwskP 268 (270)
T KOG0122|consen 260 ILRVEWSKP 268 (270)
T ss_pred EEEEEecCC
Confidence 999999875
No 63
>KOG4205|consensus
Probab=99.39 E-value=1.2e-12 Score=138.28 Aligned_cols=169 Identities=21% Similarity=0.307 Sum_probs=136.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..+.|||++|++++|++.|+++|++||.|. .|.+++|+.+|+++||+||+|.+++.+..++. ..-+.|.|+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~--------d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr 75 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVT--------DCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGR 75 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCcee--------eEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCc
Confidence 468999999999999999999999999999 79999999999999999999999999999984 556778999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.|.+..|....... ........+.|+|..++.. +.+
T Consensus 76 ~ve~k~av~r~~~~----------------------------------~~~~~~~tkkiFvGG~~~~--~~e-------- 111 (311)
T KOG4205|consen 76 SVEPKRAVSREDQT----------------------------------KVGRHLRTKKIFVGGLPPD--TTE-------- 111 (311)
T ss_pred cccceeccCccccc----------------------------------ccccccceeEEEecCcCCC--Cch--------
Confidence 99999887321000 0000113578999998655 433
Q ss_pred HHHHHHHHhcCCceeEEEe-cC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 659 QQDLREECSKCGHVKKVVL-HD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i-~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
+++++.|.+||.|..+.+ ++ ..++|++||.|.+.++..+++.. .-..|.|+.+.|--+-++.
T Consensus 112 -~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 112 -EDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred -HHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccchh
Confidence 899999999998887644 33 56789999999999999887664 7888999999997655444
No 64
>KOG1456|consensus
Probab=99.37 E-value=1e-10 Score=121.38 Aligned_cols=302 Identities=18% Similarity=0.217 Sum_probs=196.7
Q ss_pred CccEEEEcCC--CCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNL--PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nL--P~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
.|.-|.++=| -+.+|.+-|..+...+|.|.+ |.|++. + |- .|+|+|.+.+.|++|-..|||..|.
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR--------IvIfkk-n-gV---QAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLR--------IVIFKK-N-GV---QAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEE--------EEEEec-c-ce---eeEEeechhHHHHHHHhhccccccc
Confidence 5555555544 467999999999999999998 888765 2 44 6999999999999999999999985
Q ss_pred -C-eEEEEEeecccccC------C-----------CCCCCCchhhhhHHHHHHHHHHHhhhccCCC-------------C
Q psy2160 292 -G-KKIKVERAKFTMKG------E-----------AYDPKLKPKKKRKKDLEKLKKAQEKLFDWRP-------------D 339 (773)
Q Consensus 292 -g-~~I~V~~A~~~~k~------~-----------~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~-------------~ 339 (773)
| .+|+|++|+...-. + .++|...+-. +... ...+......|+. .
T Consensus 186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~-r~~~---p~~~~~~pss~~G~h~~y~sg~~~~p~ 261 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYD-RQRQ---PAPLGYHPSSRGGGHSGYYSGDRHGPP 261 (494)
T ss_pred ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCc-cccC---CCccCCChhhcCCCCCCCcccccCCCC
Confidence 4 79999999863111 0 0122211100 0000 0000001111211 0
Q ss_pred cc------------CC----CCCCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEE
Q psy2160 340 KM------------RG----ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403 (773)
Q Consensus 340 ~~------------~~----~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV 403 (773)
.. ++ .....+.+++|.+|-.. .+. .+.|.++|.-||.|.+|.+... ..|.|.|
T Consensus 262 ~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~-k~N---------~drlFNl~ClYGNV~rvkFmkT-k~gtamV 330 (494)
T KOG1456|consen 262 HPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHG-KMN---------CDRLFNLFCLYGNVERVKFMKT-KPGTAMV 330 (494)
T ss_pred CCCCCCCccccccCCCCCCCCCCCCCcEEEEEecccc-ccc---------hhhhhhhhhhcCceeeEEEeec-ccceeEE
Confidence 00 00 11234678899998332 222 2679999999999999987754 4899999
Q ss_pred EecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC-CCCCCC
Q psy2160 404 FFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA-YDPKLK 482 (773)
Q Consensus 404 ~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~-~~p~~~ 482 (773)
++.+..+.++|+..||+..+-|.+|.+...... +.... ..|+.. .|++ +.....
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~--~v~~~------------~pflLp-----------DgSpSfKdys~ 385 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN--FVSPV------------QPFLLP-----------DGSPSFKDYSG 385 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeecccc--ccccC------------CceecC-----------CCCcchhhccc
Confidence 999999999999999999999999988764321 11000 001111 1111 000011
Q ss_pred chHHh---hhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC
Q psy2160 483 PKKKR---KKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559 (773)
Q Consensus 483 ~~~~r---~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~ 559 (773)
+++.| .....+.....+.+.|+.-|.|..+|++.|..+|...+..-. +|+|+.-+. ....-|+++|++
T Consensus 386 SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~-------svkvFp~ks--erSssGllEfe~ 456 (494)
T KOG1456|consen 386 SKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPT-------SVKVFPLKS--ERSSSGLLEFEN 456 (494)
T ss_pred ccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcc-------eEEeecccc--cccccceeeeeh
Confidence 12222 111112233567789999999999999999999997776531 577776552 235578999999
Q ss_pred hHHHHHHHHHhCCceecC
Q psy2160 560 KESVDLALSILDGYEIRG 577 (773)
Q Consensus 560 ~e~A~~Ai~~lng~~i~g 577 (773)
.++|..||..||...|.+
T Consensus 457 ~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 457 KSDAVEALMKLNHYPIEG 474 (494)
T ss_pred HHHHHHHHHHhccccccC
Confidence 999999999999999985
No 65
>KOG0126|consensus
Probab=99.36 E-value=9.4e-14 Score=130.83 Aligned_cols=89 Identities=29% Similarity=0.497 Sum_probs=82.3
Q ss_pred CCCCccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHH
Q psy2160 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI 284 (773)
Q Consensus 205 ~~~~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ 284 (773)
..+|.+-=..+.-|||+|||++.||.+|.-+||.||.|.. |.|++|+.||+++||||++|.+..+..+|+..
T Consensus 25 ~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vd--------inLiRDk~TGKSKGFaFLcYEDQRSTILAVDN 96 (219)
T KOG0126|consen 25 KKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVD--------INLIRDKKTGKSKGFAFLCYEDQRSTILAVDN 96 (219)
T ss_pred ccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEE--------EEEEecCCCCcccceEEEEecCccceEEEEec
Confidence 3468654448899999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cCCceecCeEEEEEeec
Q psy2160 285 LDGYEIRGKKIKVERAK 301 (773)
Q Consensus 285 lng~~l~g~~I~V~~A~ 301 (773)
|||..|.||.|+|....
T Consensus 97 ~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 97 LNGIKILGRTIRVDHVS 113 (219)
T ss_pred cCCceecceeEEeeecc
Confidence 99999999999997643
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.35 E-value=3e-12 Score=106.61 Aligned_cols=70 Identities=33% Similarity=0.570 Sum_probs=65.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 218 VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
|||+|||+++++++|+++|+.||.|.. |++..+++ |.++|+|||+|.+.++|..|++.+++..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~--------v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEK--------VRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEE--------EEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcce--------EEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999987 99999988 99999999999999999999999999999999875
No 67
>KOG0126|consensus
Probab=99.32 E-value=2.5e-13 Score=127.93 Aligned_cols=80 Identities=30% Similarity=0.513 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
.+..|||+|||.+.|+.+|.-+|++||.|. +|.|++|..||+++||||++|.+..+...|+..|||..|.||
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~v--------dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIV--------DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceE--------EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 467999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred EEEEEEcc
Q psy2160 579 KIKVERAK 586 (773)
Q Consensus 579 ~i~V~~a~ 586 (773)
.|+|.-..
T Consensus 106 tirVDHv~ 113 (219)
T KOG0126|consen 106 TIRVDHVS 113 (219)
T ss_pred eEEeeecc
Confidence 99998654
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.31 E-value=6.3e-12 Score=104.66 Aligned_cols=70 Identities=33% Similarity=0.570 Sum_probs=65.0
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 503 l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
|||+|||+++|+++|+++|+.||.|. .+++..+.. |.++|+|||+|.++++|..|++.++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~--------~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVE--------KVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEE--------EEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcc--------eEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999998 799999987 89999999999999999999999999999999885
No 69
>KOG1457|consensus
Probab=99.31 E-value=3e-11 Score=117.48 Aligned_cols=191 Identities=21% Similarity=0.236 Sum_probs=127.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEE-EecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec-
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL-YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR- 576 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l-~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~- 576 (773)
.-++|||.+||.++-..+|+.+|..|-.-+ .+.| +.+......+-+|||+|.+..+|..|+.+|||..|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYE--------gslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYE--------GSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCcc--------ceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 468999999999999999999999997766 3444 334332345679999999999999999999999997
Q ss_pred --CeEEEEEEccccccCCc--C--CCCC-------Cc-hhhh-HHHHHHHHHH----------------------hhhc-
Q psy2160 577 --GKKIKVERAKFTMKGEA--Y--DPKL-------KP-KKKR-KKDLEKLKKA----------------------QEKL- 618 (773)
Q Consensus 577 --g~~i~V~~a~~~~~~~~--~--~~~~-------~~-~~~k-~~~~~~~~~~----------------------~~~~- 618 (773)
+..|++++|+...+... . .|.. .+ ...+ ...+...... .+.+
T Consensus 105 E~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~ 184 (284)
T KOG1457|consen 105 ETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALS 184 (284)
T ss_pred ccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhh
Confidence 78999999986533110 0 0000 00 0000 0000000000 0000
Q ss_pred --cCCCCcccc--------CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEE
Q psy2160 619 --FDWRPDKMR--------GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 688 (773)
Q Consensus 619 --~~~~~~~~~--------~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV 688 (773)
..|.+.... ......-.+|+|-||... +++ ++|+..|+.|-....+.|..+...-+|||
T Consensus 185 a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~--~~e---------d~l~~~~~~~~gf~~l~~~~~~g~~vaf~ 253 (284)
T KOG1457|consen 185 APDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPN--CTE---------DELKQLLSRYPGFHILKIRARGGMPVAFA 253 (284)
T ss_pred hhhhcCCcccchhhhhhcccccchhhhhHhhhccCCC--CCH---------HHHHHHHHhCCCceEEEEecCCCcceEee
Confidence 011110000 001112348999999433 443 89999999998888788877776679999
Q ss_pred EecCHHHHHHHHHHhCCcee
Q psy2160 689 FFKEPEAADACRELLNGRWF 708 (773)
Q Consensus 689 ~F~~~e~A~~Ai~~lnGr~f 708 (773)
.|.+.+.|..|+..|.|..+
T Consensus 254 ~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 254 DFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cHHHHHHHHHHHHHhhccee
Confidence 99999999999999999877
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=7.8e-12 Score=127.58 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=70.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 294 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~ 294 (773)
.++|||+|||+.+|+++|+++|+.||.|.. |.|+++.. .+|||||+|.++++|..||. |||..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~--------V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEY--------VEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCce
Confidence 579999999999999999999999999998 99998854 47999999999999999995 9999999999
Q ss_pred EEEEeec
Q psy2160 295 IKVERAK 301 (773)
Q Consensus 295 I~V~~A~ 301 (773)
|.|.++.
T Consensus 72 V~Vt~a~ 78 (260)
T PLN03120 72 VTITPAE 78 (260)
T ss_pred EEEEecc
Confidence 9998876
No 71
>KOG1457|consensus
Probab=99.29 E-value=4.9e-11 Score=116.03 Aligned_cols=82 Identities=23% Similarity=0.301 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEE-EecCCCCCcceEEEEEecChHHHHHHHHHcCCceec-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL-YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR- 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l-~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~- 291 (773)
.-++|||+|||.++...||..+|..|---.. ..| +.++...-.+-+|||+|.+..+|..|+.+|||..|.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEg--------slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEG--------SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccc--------eeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 4689999999999999999999998855544 233 223321234579999999999999999999999985
Q ss_pred --CeEEEEEeeccc
Q psy2160 292 --GKKIKVERAKFT 303 (773)
Q Consensus 292 --g~~I~V~~A~~~ 303 (773)
+..|+|+.|+..
T Consensus 105 E~~stLhiElAKSN 118 (284)
T KOG1457|consen 105 ETGSTLHIELAKSN 118 (284)
T ss_pred ccCceeEeeehhcC
Confidence 789999998843
No 72
>KOG4211|consensus
Probab=99.28 E-value=3.9e-11 Score=129.34 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=126.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
....|.+++||+++|+++|.++|+.|++-. +.+.+. +|+..|.|||+|.+.+++.+|++ .+-..+..+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~I~~---------~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R 76 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCGIEN---------LEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR 76 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCceeE---------EEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence 456788999999999999999999998753 444443 59999999999999999999995 788888899
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
-|.|-.+..... +|.-............+|-|+.||.. ++
T Consensus 77 YIEVf~~~~~e~-----------------------------d~~~~~~g~~s~~~d~vVRLRGLPfs--ct--------- 116 (510)
T KOG4211|consen 77 YIEVFTAGGAEA-----------------------------DWVMRPGGPNSSANDGVVRLRGLPFS--CT--------- 116 (510)
T ss_pred eEEEEccCCccc-----------------------------cccccCCCCCCCCCCceEEecCCCcc--Cc---------
Confidence 999998762211 11111111111234679999999887 44
Q ss_pred HHHHHHHHhcCCceeE-EEe---cCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160 659 QQDLREECSKCGHVKK-VVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~-v~i---~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~ 716 (773)
++||.+.|+..=.|.. |.+ ++..+.|-|||+|++.+.|++|+.. |-..++-|-|+|.
T Consensus 117 e~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 117 EEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred HHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 3899999997766665 222 3467899999999999999999998 7778888888874
No 73
>KOG0106|consensus
Probab=99.28 E-value=8.2e-12 Score=124.24 Aligned_cols=161 Identities=24% Similarity=0.318 Sum_probs=125.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
..|||++||..+.+.+|..+|..||.|. .|.|. .||+||.|.+.-+|..|+..||+..|.|-.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~--------d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIP--------DADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccc--------cceee--------cccceeccCchhhhhcccchhcCceecceee
Confidence 4699999999999999999999999998 45554 5789999999999999999999999999889
Q ss_pred EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccC----CCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFD----WRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
.|+++....... .....+ |...- .......+.++|.|+..- +.
T Consensus 66 vve~~r~~~~~~----------------------g~~~~g~r~~~~~~~--~~p~~s~~r~~~~~~~~r--~~------- 112 (216)
T KOG0106|consen 66 VVEHARGKRRGR----------------------GRPRGGDRRSDSRRY--RPPSRTHFRLIVRNLSLR--VS------- 112 (216)
T ss_pred eeeccccccccc----------------------CCCCCCCccchhhcc--CCcccccceeeeccchhh--hh-------
Confidence 999988432111 000000 11110 111234578888887433 22
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~ 716 (773)
+.+|.+.|+++|.++...+ ..+.+||+|.+.++|.+|+..|+|.-+.|++|.+.
T Consensus 113 --~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 113 --WQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred --HHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 4899999999999965554 34789999999999999999999999999999993
No 74
>KOG0107|consensus
Probab=99.27 E-value=9.8e-12 Score=116.95 Aligned_cols=76 Identities=29% Similarity=0.370 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+|+|||+||+.++++.||..+|+.||.|.. |-|-++ +-|||||+|.++-+|..|+..|||..|.|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrs--------vWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~ 75 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRS--------VWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGS 75 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCccee--------EEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCc
Confidence 6899999999999999999999999999998 777754 458999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
.|+|+.+.-
T Consensus 76 r~rVE~S~G 84 (195)
T KOG0107|consen 76 RIRVELSTG 84 (195)
T ss_pred eEEEEeecC
Confidence 999998763
No 75
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2.4e-11 Score=124.03 Aligned_cols=76 Identities=21% Similarity=0.265 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||+.+|+++|+++|+.||.|. +|.|+.+.. ++|||||+|.++++|..|| .|||..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~--------~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIE--------YVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCce
Confidence 57999999999999999999999999999 899998864 4799999999999999999 59999999999
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
|.|.++..
T Consensus 72 V~Vt~a~~ 79 (260)
T PLN03120 72 VTITPAED 79 (260)
T ss_pred EEEEeccC
Confidence 99999873
No 76
>KOG0121|consensus
Probab=99.25 E-value=1.5e-11 Score=109.64 Aligned_cols=82 Identities=24% Similarity=0.453 Sum_probs=76.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+||+.-+|+++|.++|++||.|. +|.|=.|+.+..+=|||||+|-+.++|..|++.++|+.+.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~ir--------riiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIR--------RIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchh--------eeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 44679999999999999999999999999999 7888889888888899999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
.++|++.+.-
T Consensus 105 dr~ir~D~D~ 114 (153)
T KOG0121|consen 105 DRPIRIDWDA 114 (153)
T ss_pred ccceeeeccc
Confidence 9999999853
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=1.8e-11 Score=130.60 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=72.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecCh--HHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK--ESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~--esA~~Al~~lng~~l~ 291 (773)
...+||||||++++|+++|..+|+.||.|.. |.|++ .|| +|||||+|... .++.+||..|||..+.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkd--------VEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWK 76 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDA--------VEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK 76 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeec
Confidence 5699999999999999999999999999998 99994 457 99999999988 7899999999999999
Q ss_pred CeEEEEEeeccc
Q psy2160 292 GKKIKVERAKFT 303 (773)
Q Consensus 292 g~~I~V~~A~~~ 303 (773)
|+.|+|+.|+..
T Consensus 77 GR~LKVNKAKP~ 88 (759)
T PLN03213 77 GGRLRLEKAKEH 88 (759)
T ss_pred CceeEEeeccHH
Confidence 999999998853
No 78
>KOG0125|consensus
Probab=99.24 E-value=1.7e-11 Score=125.68 Aligned_cols=81 Identities=23% Similarity=0.374 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|+|+|||+...+-||+.+|.+||.|. +|.|+.+.. .+||||||+|+++++|++|-..|||+.|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl--------dVEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VE 162 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL--------DVEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVE 162 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCcee--------eEEEEeccC--CCCccceEEecChhhHHHHHHHhhcceee
Confidence 34568999999999999999999999999999 899999985 38999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
||+|.|..|.-
T Consensus 163 GRkIEVn~ATa 173 (376)
T KOG0125|consen 163 GRKIEVNNATA 173 (376)
T ss_pred ceEEEEeccch
Confidence 99999999873
No 79
>KOG0149|consensus
Probab=99.24 E-value=1.2e-11 Score=121.87 Aligned_cols=81 Identities=22% Similarity=0.277 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.-|+|||+|||+.++.+.|+++|.+||.|.+ ..|+.|+.||++|||+||+|.+.++|.+|++. -.-.|.||
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~e--------avvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR 81 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVE--------AVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGR 81 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEE--------EEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccc
Confidence 5589999999999999999999999999999 99999999999999999999999999999984 34468999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+-.|..|.+.
T Consensus 82 ~aNcnlA~lg 91 (247)
T KOG0149|consen 82 KANCNLASLG 91 (247)
T ss_pred ccccchhhhc
Confidence 9999988763
No 80
>KOG1365|consensus
Probab=99.24 E-value=1.5e-10 Score=120.44 Aligned_cols=280 Identities=19% Similarity=0.200 Sum_probs=173.5
Q ss_pred CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccC----CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG----HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 424 (773)
Q Consensus 349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G----~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~ 424 (773)
+.++-.+.+ |+...+ .+|..+|.-.. .+.-+....+...|.+.|+|.+++.-+.|++. |...++
T Consensus 60 ~vvvRaRgl--pwq~Sd---------~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g 127 (508)
T KOG1365|consen 60 NVVVRARGL--PWQSSD---------QDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMG 127 (508)
T ss_pred ceEEEecCC--CCCccc---------CCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhcc
Confidence 344556677 555433 66777776532 22222223455678999999999999999885 777889
Q ss_pred CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCC-CCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160 425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEA-YDPKLKPKKKRKKDLEKLKKAQENTKV 503 (773)
Q Consensus 425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~-~~p~~~~~~~r~~~~~~~~~~~~~~~l 503 (773)
+|.|.+.-..+..-+.+. .|.. ..+.+.++ ...-.|
T Consensus 128 ~ryievYka~ge~f~~ia------------------------------gg~s~e~~~flsk-------------~~qviv 164 (508)
T KOG1365|consen 128 TRYIEVYKATGEEFLKIA------------------------------GGTSNEAAPFLSK-------------ENQVIV 164 (508)
T ss_pred CCceeeeccCchhheEec------------------------------CCccccCCCCCCc-------------ccceEE
Confidence 999999755443321111 1111 11112111 123568
Q ss_pred EEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 583 (773)
Q Consensus 504 ~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~ 583 (773)
.+++||+++|..++.++|..--.|.- +.-.|-+++.++ |+.+|.|||.|..+++|+.|+. -|...|+-|.|.+-
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~----g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTG----GTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccC----CccceEEEECCC-CCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 88999999999999999973322221 111466777666 8999999999999999999995 44444555555554
Q ss_pred EccccccCCcCCCCCCchhhhHHHHHHHHHHhh-hccCC--CCccc--c---CCCCCCCcEEEEecCCCccccccchhhH
Q psy2160 584 RAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE-KLFDW--RPDKM--R---GERSKNESVIIVKNLFDPALFDKDVTLI 655 (773)
Q Consensus 584 ~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~--~~~~~--~---~~~~~~~~~l~ikNl~~~~~~~~d~~~~ 655 (773)
++.- .+-.+. +.+... .+..- .+... + ........||.|++|+....
T Consensus 239 RSTa--------------aEvqqv---lnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~At-------- 293 (508)
T KOG1365|consen 239 RSTA--------------AEVQQV---LNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEAT-------- 293 (508)
T ss_pred HHhH--------------HHHHHH---HHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhh--------
Confidence 4330 111111 111110 11110 00000 0 01123357999999987754
Q ss_pred HHHHHHHHHHHhcCCce-e--EEEe---cCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 656 LEYQQDLREECSKCGHV-K--KVVL---HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 656 ~~l~edl~~~f~~fG~V-~--~v~i---~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
.+||.+.+..|-.- . -|++ -.++|.|-|||.|.+.++|..|...-+.....+|-|+|.-
T Consensus 294 ---vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 294 ---VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred ---HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 36777776665532 2 1433 2488999999999999999999999988888899998843
No 81
>KOG0114|consensus
Probab=99.23 E-value=3e-11 Score=103.88 Aligned_cols=79 Identities=25% Similarity=0.426 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
+..++-|||+|||+++|.++..++|.+||.|. .|+|-..++| +|.|||.|.+..+|.+|+..|+|..+.
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~Ir--------QIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~ 83 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIR--------QIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVD 83 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceE--------EEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccC
Confidence 34678999999999999999999999999999 6898877765 999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
++.|.|-+-+
T Consensus 84 ~ryl~vlyyq 93 (124)
T KOG0114|consen 84 NRYLVVLYYQ 93 (124)
T ss_pred CceEEEEecC
Confidence 9999999876
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=3.8e-11 Score=120.55 Aligned_cols=77 Identities=17% Similarity=0.332 Sum_probs=70.5
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
+...+|||+||++.+|+++|++||+.||.|.. |+|++|. ..+|+|||+|.++++|..||. |+|..|.+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~--------V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d 70 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEH--------VEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVD 70 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEE--------EEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCC
Confidence 35689999999999999999999999999999 9999884 456899999999999999995 99999999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
++|.|.++.
T Consensus 71 ~~I~It~~~ 79 (243)
T PLN03121 71 QRVCITRWG 79 (243)
T ss_pred ceEEEEeCc
Confidence 999998765
No 83
>KOG0107|consensus
Probab=99.22 E-value=3e-11 Score=113.71 Aligned_cols=78 Identities=31% Similarity=0.424 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
..++.|||+||+..+++.+|..+|..||.|. +|-|..++ .|||||+|.++-+|..|+..|+|..|.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lr--------svWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLR--------SVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcce--------eEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccC
Confidence 4579999999999999999999999999998 78888765 7999999999999999999999999999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
..|+|++..-.
T Consensus 75 ~r~rVE~S~G~ 85 (195)
T KOG0107|consen 75 SRIRVELSTGR 85 (195)
T ss_pred ceEEEEeecCC
Confidence 99999998743
No 84
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.22 E-value=1.5e-10 Score=121.64 Aligned_cols=169 Identities=23% Similarity=0.322 Sum_probs=115.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|.++|..||.|. .|.+..+..+|.++|+|||+|.+.++|..|+..++|..|.|++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~--------~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVK--------RVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCcee--------EEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 69999999999999999999999999998 7999999888999999999999999999999999999999999
Q ss_pred EEEEEccc--cccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 580 IKVERAKF--TMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 580 i~V~~a~~--~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
|.|.++.. ......... ....... .. .............+++.|++... .
T Consensus 187 ~~v~~~~~~~~~~~~~~~~----------~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~--~-------- 238 (306)
T COG0724 187 LRVQKAQPASQPRSELSNN----------LDASFAK---KL-----SRGKALLLEKSDNLYVGNLPLKT--A-------- 238 (306)
T ss_pred eEeeccccccccccccccc----------cchhhhc---cc-----cccccccccccceeecccccccc--c--------
Confidence 99999763 111000000 0000000 00 00011122345778888886552 2
Q ss_pred HHHHHHHHHhcCCceeEEEecCCC----CCcEEEEEecCHHHHHHHHHHhCC
Q psy2160 658 YQQDLREECSKCGHVKKVVLHDKH----PEGVAQIFFKEPEAADACRELLNG 705 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~~~----~~G~afV~F~~~e~A~~Ai~~lnG 705 (773)
...+...|..+|.+..+.+.... +.+..++.+.....+..+...+++
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (306)
T COG0724 239 -EEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNK 289 (306)
T ss_pred -hhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccc
Confidence 37889999999999776654422 222333444444444444444333
No 85
>KOG4212|consensus
Probab=99.21 E-value=1.7e-10 Score=121.75 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=185.1
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhh-ccCCEEEEEee-C--CCCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS-KCGHVKKVVLH-D--KHPEGVAQIFFKEPEAADACRELLNGR 421 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~-k~G~V~~V~i~-d--~~~~G~afV~F~~~e~A~~Ai~~lng~ 421 (773)
....+.+||.|++ -+..= ++|++++. +.|+|+.|.+. | +.++|||.|+|++++.+++|++.||..
T Consensus 41 ~~r~R~vfItNIp--yd~rW---------qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~ 109 (608)
T KOG4212|consen 41 AARDRSVFITNIP--YDYRW---------QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY 109 (608)
T ss_pred ccccceEEEecCc--chhhh---------HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc
Confidence 4456789999993 33221 67888886 58999999765 3 568999999999999999999999999
Q ss_pred ccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCC
Q psy2160 422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENT 501 (773)
Q Consensus 422 ~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~ 501 (773)
.+.||+|.|....+. +..++- .......
T Consensus 110 ~~~GR~l~vKEd~d~----------q~~~~~------------------------------------------~~~r~g~ 137 (608)
T KOG4212|consen 110 EVNGRELVVKEDHDE----------QRDQYG------------------------------------------RIVRDGG 137 (608)
T ss_pred cccCceEEEeccCch----------hhhhhh------------------------------------------heeeccC
Confidence 999999999643221 111100 1122456
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
++|+.++...+-..-|...|+--|... +--+.+|.+ +.+++..+++|.+.-.+..++..++.....-+.++
T Consensus 138 ~~f~~~~~~q~G~~~l~~~g~ggG~~~--------Rg~~~~D~D-r~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr~~h 208 (608)
T KOG4212|consen 138 GGFGGGGGVQGGNGGLNGGGGGGGDRD--------RGFSRRDDD-RLSRRNNTNTMSNDYNNSSNYNLFGLSASFLRSLH 208 (608)
T ss_pred cccccCcceecccccccccCCCCcccc--------CCCCccccc-ccccccCccccccccccchhhhcccchhhhhhhcc
Confidence 899999999999999999999888766 445566665 78899999999999999999987777655555555
Q ss_pred EEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHH
Q psy2160 582 VERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQD 661 (773)
Q Consensus 582 V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ed 661 (773)
+ +.. +--..++|.||... +.. ..
T Consensus 209 ~-f~p---------------------------------------------Pl~~k~fvanl~~~--vg~---------~k 231 (608)
T KOG4212|consen 209 I-FSP---------------------------------------------PLHNKVFVANLDYK--VGN---------KK 231 (608)
T ss_pred C-CCC---------------------------------------------Cccceeeeeccccc--cch---------HH
Confidence 3 111 00134679998665 333 67
Q ss_pred HHHHHhcCCceeEEEe--c-CCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 662 LREECSKCGHVKKVVL--H-DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 662 l~~~f~~fG~V~~v~i--~-~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
|.+.|.--|.|+.|.+ . .+++.|++.|+|..+-+|..||..|++.-+..|+..+..
T Consensus 232 L~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 232 LKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred HHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 8888888899998854 2 277889999999999999999999999888888888877
No 86
>KOG4207|consensus
Probab=99.19 E-value=2.8e-11 Score=116.41 Aligned_cols=82 Identities=26% Similarity=0.446 Sum_probs=79.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|-|-||.+-+|.++|+.+|.+||.|-. |.|++|..|+.++|||||.|....+|+.|+..|||..|.|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgD--------VyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR 83 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGD--------VYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR 83 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccc--------eecccccccccccceeEEEeeecchHHHHHHhhcceeeccc
Confidence 7799999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
.|+|+.|...
T Consensus 84 elrVq~aryg 93 (256)
T KOG4207|consen 84 ELRVQMARYG 93 (256)
T ss_pred eeeehhhhcC
Confidence 9999999843
No 87
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=1.1e-10 Score=124.87 Aligned_cols=78 Identities=15% Similarity=0.286 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCCh--HHHHHHHHHhCCcee
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK--ESVDLALSILDGYEI 575 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~--e~A~~Ai~~lng~~i 575 (773)
....+|||+||++++|+++|..+|+.||.|. +|.|+ +.+| +|||||+|... .++.+||..|||..+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVk--------dVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEW 75 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVD--------AVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW 75 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCee
Confidence 3568999999999999999999999999999 89999 4457 99999999987 789999999999999
Q ss_pred cCeEEEEEEccc
Q psy2160 576 RGKKIKVERAKF 587 (773)
Q Consensus 576 ~g~~i~V~~a~~ 587 (773)
.|+.|+|..|+.
T Consensus 76 KGR~LKVNKAKP 87 (759)
T PLN03213 76 KGGRLRLEKAKE 87 (759)
T ss_pred cCceeEEeeccH
Confidence 999999999983
No 88
>KOG0149|consensus
Probab=99.18 E-value=3.4e-11 Score=118.70 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...+.|||+||++.++.+.|+.+|++||.|. ...|+.|..||+++|||||+|.+.++|.+|++..| -.|.|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~--------eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdG 80 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIV--------EAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDG 80 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceE--------EEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccc
Confidence 3568999999999999999999999999999 58999999999999999999999999999996544 45899
Q ss_pred eEEEEEEcccccc
Q psy2160 578 KKIKVERAKFTMK 590 (773)
Q Consensus 578 ~~i~V~~a~~~~~ 590 (773)
|+-.|.+|.+..+
T Consensus 81 R~aNcnlA~lg~~ 93 (247)
T KOG0149|consen 81 RKANCNLASLGGK 93 (247)
T ss_pred cccccchhhhcCc
Confidence 9999999987433
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.18 E-value=9.7e-11 Score=96.47 Aligned_cols=71 Identities=30% Similarity=0.555 Sum_probs=67.1
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
+|||+|||..++.++|+++|+.||.|.. +.+..+. +.++|+|||+|.+.++|..|+..+++..+.|++|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~--------~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIES--------VKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 5899999999999999999999999998 8988876 77899999999999999999999999999999998
Q ss_pred E
Q psy2160 297 V 297 (773)
Q Consensus 297 V 297 (773)
|
T Consensus 71 v 71 (72)
T smart00362 71 V 71 (72)
T ss_pred e
Confidence 7
No 90
>smart00362 RRM_2 RNA recognition motif.
Probab=99.17 E-value=1.4e-10 Score=95.47 Aligned_cols=72 Identities=31% Similarity=0.564 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
+|||+|||..++.++|+++|+.||.|. .+.+..+. +.++|+|||+|.+.++|..|+..++|..+.|++|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~--------~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~ 70 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIE--------SVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLR 70 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEe
Confidence 589999999999999999999999998 78888876 67899999999999999999999999999999998
Q ss_pred EE
Q psy2160 582 VE 583 (773)
Q Consensus 582 V~ 583 (773)
|+
T Consensus 71 v~ 72 (72)
T smart00362 71 VE 72 (72)
T ss_pred eC
Confidence 74
No 91
>KOG4207|consensus
Probab=99.17 E-value=4.5e-11 Score=115.02 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=80.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|.|-||-.-+|.++|+.+|++||.|- +|.|..|+.|+.++|||||-|....+|+.|+..|+|.+|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vg--------DVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld 81 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVG--------DVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD 81 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCccc--------ceecccccccccccceeEEEeeecchHHHHHHhhcceeec
Confidence 34678999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccccc
Q psy2160 577 GKKIKVERAKFTM 589 (773)
Q Consensus 577 g~~i~V~~a~~~~ 589 (773)
|+.|+|++|+...
T Consensus 82 gRelrVq~arygr 94 (256)
T KOG4207|consen 82 GRELRVQMARYGR 94 (256)
T ss_pred cceeeehhhhcCC
Confidence 9999999998753
No 92
>KOG0130|consensus
Probab=99.17 E-value=4.4e-11 Score=107.51 Aligned_cols=81 Identities=25% Similarity=0.361 Sum_probs=77.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..=.|||+|+...+|+++|.+.|..||.|.. |+|-.|..||..+|||+|+|.+.+.|+.|+..|||..|.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKN--------ihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKN--------IHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccc--------eeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 4467999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.++-.
T Consensus 143 ~v~VDw~Fv 151 (170)
T KOG0130|consen 143 NVSVDWCFV 151 (170)
T ss_pred ceeEEEEEe
Confidence 999998863
No 93
>KOG0113|consensus
Probab=99.15 E-value=1.1e-10 Score=118.36 Aligned_cols=80 Identities=25% Similarity=0.409 Sum_probs=76.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.-+||||+-|+++++|+.|+..|++||.|.. |+|++|.-||+++|||||+|..+-+...|.+..+|..|.|+
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~Ikr--------irlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKR--------IRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCccee--------EEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 5589999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
.|.|..-.
T Consensus 172 ri~VDvER 179 (335)
T KOG0113|consen 172 RILVDVER 179 (335)
T ss_pred EEEEEecc
Confidence 99996543
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=1.9e-10 Score=91.35 Aligned_cols=55 Identities=36% Similarity=0.459 Sum_probs=50.8
Q ss_pred HHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 662 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 662 l~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
|+++|++||.|.+|.+.+.. .|+|||+|.+.++|..|+..|||+.|+|++|+|+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 67899999999999998765 69999999999999999999999999999999987
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.15 E-value=1.8e-10 Score=115.79 Aligned_cols=76 Identities=17% Similarity=0.336 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
...+|||+||++.+|+++|+++|+.||.|. +|+|++|.. .+|+|||+|.++++|..|+ .|+|..|.++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~--------~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIE--------HVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeE--------EEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence 357999999999999999999999999999 899999954 5689999999999999999 7999999999
Q ss_pred EEEEEEcc
Q psy2160 579 KIKVERAK 586 (773)
Q Consensus 579 ~i~V~~a~ 586 (773)
+|.|..+.
T Consensus 72 ~I~It~~~ 79 (243)
T PLN03121 72 RVCITRWG 79 (243)
T ss_pred eEEEEeCc
Confidence 99999876
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.7e-10 Score=94.55 Aligned_cols=70 Identities=37% Similarity=0.562 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297 (773)
Q Consensus 220 V~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V 297 (773)
|+|||..+++++|+++|+.||.|.. +.+..+..++.++|+|||.|.+.++|..|+..|++..+.|++|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~--------~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIES--------VRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeE--------EEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999988 999998877999999999999999999999999999999999987
No 97
>KOG0106|consensus
Probab=99.13 E-value=1.1e-10 Score=116.37 Aligned_cols=165 Identities=25% Similarity=0.352 Sum_probs=124.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
..|||++||+.+.+.+|..||..||.|.. |.|. .||+||.|.+.-+|.-|+--||+..|.|-.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d--------~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPD--------ADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERL 65 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccc--------ceee--------cccceeccCchhhhhcccchhcCceecceee
Confidence 57999999999999999999999999987 5554 4689999999999999999999999999888
Q ss_pred EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160 296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 375 (773)
Q Consensus 296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e 375 (773)
.|++|....... -.|-..- +. .|. .....+......+++.|+ ...+ ...
T Consensus 66 vve~~r~~~~~~-g~~~~g~---r~--------------~~~--~~~~~p~~s~~r~~~~~~--~~r~---------~~q 114 (216)
T KOG0106|consen 66 VVEHARGKRRGR-GRPRGGD---RR--------------SDS--RRYRPPSRTHFRLIVRNL--SLRV---------SWQ 114 (216)
T ss_pred eeeccccccccc-CCCCCCC---cc--------------chh--hccCCcccccceeeeccc--hhhh---------hHH
Confidence 998877321111 0000000 00 010 011122455667888887 2222 138
Q ss_pred HHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEE
Q psy2160 376 DLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431 (773)
Q Consensus 376 dL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~ 431 (773)
+|.+.|+.+|.+....+ ..+.++|+|.+.++|..|+..++|..+.|+.|.+.
T Consensus 115 dl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 115 DLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred HHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 89999999999965543 47889999999999999999999999999999994
No 98
>smart00360 RRM RNA recognition motif.
Probab=99.13 E-value=2.3e-10 Score=93.81 Aligned_cols=71 Identities=37% Similarity=0.559 Sum_probs=66.6
Q ss_pred EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160 505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 583 (773)
Q Consensus 505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~ 583 (773)
|+|||..++.++|+.+|+.||.|. .+.+..++.++.++|+|||+|.+.++|..|+..|++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~--------~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIE--------SVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEe--------EEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999998 79999888778999999999999999999999999999999999874
No 99
>KOG0111|consensus
Probab=99.13 E-value=3.5e-11 Score=116.58 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=79.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||++|...+|+.-|...|=+||.|.. |+++.|-.+++.+|||||+|.-.|+|..||..||+++|.||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~d--------IqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKD--------IQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhh--------cccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 6689999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
.|+|.+|++.
T Consensus 81 tirVN~AkP~ 90 (298)
T KOG0111|consen 81 TIRVNLAKPE 90 (298)
T ss_pred eEEEeecCCc
Confidence 9999999853
No 100
>KOG0114|consensus
Probab=99.13 E-value=3.1e-10 Score=97.67 Aligned_cols=76 Identities=25% Similarity=0.434 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+.-|||+|||+++|.++..++|.+||.|.. |+|=.. ...+|-|||.|.+..+|.+|+..|+|..+.++
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQ--------IRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r 85 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQ--------IRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNR 85 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEE--------EEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCc
Confidence 8899999999999999999999999999998 887543 45689999999999999999999999999999
Q ss_pred EEEEEee
Q psy2160 294 KIKVERA 300 (773)
Q Consensus 294 ~I~V~~A 300 (773)
.+.|-..
T Consensus 86 yl~vlyy 92 (124)
T KOG0114|consen 86 YLVVLYY 92 (124)
T ss_pred eEEEEec
Confidence 9999663
No 101
>KOG0130|consensus
Probab=99.12 E-value=8.7e-11 Score=105.66 Aligned_cols=83 Identities=24% Similarity=0.350 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
+...-.|||+++....|+++|.+.|..||.|. +|+|-.|+.||-.+|||+|+|.+.+.|+.||..|||..|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiK--------NihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIK--------NIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhccccc--------ceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 34567899999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|..|.|.|+-.
T Consensus 141 ~q~v~VDw~Fv 151 (170)
T KOG0130|consen 141 GQNVSVDWCFV 151 (170)
T ss_pred CCceeEEEEEe
Confidence 99999999974
No 102
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=3.9e-10 Score=93.35 Aligned_cols=73 Identities=33% Similarity=0.569 Sum_probs=69.0
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
+|+|+|||..+++++|.++|+.||.|.. +.+..+.. +.++|+|||.|.+.++|..|+..+++..+.|++|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~--------~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVES--------VRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEE--------EEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4899999999999999999999999998 99999887 68899999999999999999999999999999999
Q ss_pred EE
Q psy2160 297 VE 298 (773)
Q Consensus 297 V~ 298 (773)
|.
T Consensus 72 v~ 73 (74)
T cd00590 72 VE 73 (74)
T ss_pred Ee
Confidence 85
No 103
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.2e-10 Score=120.36 Aligned_cols=79 Identities=32% Similarity=0.585 Sum_probs=76.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 294 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~ 294 (773)
.++|||+|||.++|+++|.++|..||.|.. |.|..+..+|.++|||||.|.+.++|..|+..+++..|.|++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~--------~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~ 186 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKR--------VRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRP 186 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeE--------EEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCce
Confidence 599999999999999999999999999988 999999888999999999999999999999999999999999
Q ss_pred EEEEeec
Q psy2160 295 IKVERAK 301 (773)
Q Consensus 295 I~V~~A~ 301 (773)
|.|..+.
T Consensus 187 ~~v~~~~ 193 (306)
T COG0724 187 LRVQKAQ 193 (306)
T ss_pred eEeeccc
Confidence 9998865
No 104
>KOG0125|consensus
Probab=99.11 E-value=1.9e-10 Score=118.08 Aligned_cols=79 Identities=24% Similarity=0.387 Sum_probs=74.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...+|+|+|||+...+.||+..|.+||.|.+ |-|+.+.. -+|||+||+|.++++|++|-..|+|+.+.||
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vld--------VEIIfNER--GSKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLD--------VEIIFNER--GSKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceee--------EEEEeccC--CCCccceEEecChhhHHHHHHHhhcceeece
Confidence 6689999999999999999999999999998 99999986 4799999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|..|..
T Consensus 165 kIEVn~ATa 173 (376)
T KOG0125|consen 165 KIEVNNATA 173 (376)
T ss_pred EEEEeccch
Confidence 999998874
No 105
>KOG0113|consensus
Probab=99.11 E-value=2.7e-10 Score=115.58 Aligned_cols=81 Identities=25% Similarity=0.410 Sum_probs=77.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+-++|||.-|+.++++..|+..|+.||.|. +|+|++|..||+++|||||+|.++-+...|.+..+|..|.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~Ik--------rirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIK--------RIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcce--------eEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 5679999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|.|..-.
T Consensus 171 rri~VDvER 179 (335)
T KOG0113|consen 171 RRILVDVER 179 (335)
T ss_pred cEEEEEecc
Confidence 999998644
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.09 E-value=3.7e-10 Score=94.09 Aligned_cols=60 Identities=32% Similarity=0.505 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCceeEEE--ec-C----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy2160 657 EYQQDLREECSKCGHVKKVV--LH-D----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~--i~-~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~ 716 (773)
+|++.++++|++||.|.+|. +. + ++++|+|||.|.+.++|.+|+..|||+.|+||.|.|+
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 46688888888999999884 33 3 5679999999999999999999999999999999873
No 107
>KOG0108|consensus
Probab=99.09 E-value=2e-10 Score=126.76 Aligned_cols=78 Identities=28% Similarity=0.552 Sum_probs=76.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
+.|||||+|+++++++|..+|+..|.|.. ++++.|+.||+++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s--------~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLS--------FRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccce--------eeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 99999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q psy2160 296 KVERAK 301 (773)
Q Consensus 296 ~V~~A~ 301 (773)
+|.++.
T Consensus 91 ~v~~~~ 96 (435)
T KOG0108|consen 91 RVNYAS 96 (435)
T ss_pred Eeeccc
Confidence 998876
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.06 E-value=1.1e-09 Score=90.53 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
+|+|+|||..+++++|+++|+.||.|. .+.+..++. +.++|+|||.|.+.++|..|++.+++..+.|+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~--------~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~ 71 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVE--------SVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLR 71 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEE--------EEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 489999999999999999999999998 799998876 36799999999999999999999999999999999
Q ss_pred EEE
Q psy2160 582 VER 584 (773)
Q Consensus 582 V~~ 584 (773)
|.+
T Consensus 72 v~~ 74 (74)
T cd00590 72 VEF 74 (74)
T ss_pred EeC
Confidence 863
No 109
>KOG0108|consensus
Probab=99.05 E-value=3.4e-10 Score=124.97 Aligned_cols=80 Identities=28% Similarity=0.525 Sum_probs=77.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
+.|||+|+|+++++++|..+|+..|.|. +++++.|+.||+++|||||+|.+.++|..|++.|||..+.|++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~--------s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l 90 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVL--------SFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKL 90 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccc--------eeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceE
Confidence 8999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred EEEEcccc
Q psy2160 581 KVERAKFT 588 (773)
Q Consensus 581 ~V~~a~~~ 588 (773)
+|.++...
T Consensus 91 ~v~~~~~~ 98 (435)
T KOG0108|consen 91 RVNYASNR 98 (435)
T ss_pred Eeeccccc
Confidence 99998743
No 110
>KOG0111|consensus
Probab=99.03 E-value=1.6e-10 Score=112.09 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=79.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||++|...+|+.-|...|=+||.|. .|+++.|-.+++++|||||+|.-.|+|..||..||+.++.|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~--------dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIK--------DIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchh--------hcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 4568999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
+.|+|.+|+..
T Consensus 80 rtirVN~AkP~ 90 (298)
T KOG0111|consen 80 RTIRVNLAKPE 90 (298)
T ss_pred eeEEEeecCCc
Confidence 99999999864
No 111
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=4.1e-09 Score=87.82 Aligned_cols=62 Identities=27% Similarity=0.429 Sum_probs=55.8
Q ss_pred HHHHHHHHH----hcCcceeccCCCceEEE-EEecCCC--CCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160 514 QEEFVEVMQ----KCGLVMKDVDTNQMKIK-LYTDPYT--KDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 583 (773)
Q Consensus 514 ~e~L~~~F~----~~G~I~~~~~~~~~~i~-l~~d~~t--g~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~ 583 (773)
+++|+++|+ +||.|. +|. |+.++.+ |.++|+|||+|.+.++|..|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~--------~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVG--------KINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCee--------EEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578889998 999998 685 7777766 8899999999999999999999999999999999873
No 112
>KOG0128|consensus
Probab=98.89 E-value=2.3e-11 Score=138.39 Aligned_cols=333 Identities=16% Similarity=0.168 Sum_probs=227.4
Q ss_pred ccEEEEcCCCCCCCHHHHH-HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 215 STKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~-~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+..+|-|-+..-+...|+ ..|+-++....- ..-+.+.....+||+.-..+++|..+++.+.+......
T Consensus 479 d~~R~iWn~imty~~~~iag~Wle~~~lE~~~----------g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~g 548 (881)
T KOG0128|consen 479 DKAREIWNFIMTYGGGSIAGKWLEAINLEREY----------GDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYG 548 (881)
T ss_pred hhhhHhhhccccCCcchHHHHHHHHHhHHHHh----------CCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccc
Confidence 3667788888888888888 677666554330 00011112355799999999999999998877765555
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
++.+..+.... ..|- .... ....+-....|+ .|..-.
T Consensus 549 tl~~~~~~~~~----~~pr----------------~~~~-------------~~~~~e~~s~~v-~p~~~~--------- 585 (881)
T KOG0128|consen 549 TLESFDLCPEK----VLPR----------------VYEA-------------PLERREKESTNV-YPEQQK--------- 585 (881)
T ss_pred cHHHHhhhHHh----hcch----------------hhhh-------------hhhhhhhcccCC-Ccchhh---------
Confidence 44432111100 0000 0000 001112233343 233311
Q ss_pred HHHHHHHhhccCCEEEEEeeCC----CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~----~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
++..+..|..+|.|..|.++.+ |...+.++.+....++..|.. ..|..++++.+.+...+.....
T Consensus 586 ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ad~~~~~---------- 654 (881)
T KOG0128|consen 586 KEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLADAEEKE---------- 654 (881)
T ss_pred HHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCCCchhhh----------
Confidence 2467888999999999998862 344488899999999998866 6888888888888765543200
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~ 529 (773)
+ .+...++.. ....++||+||+..+.+.+|...|..+|.+.
T Consensus 655 ----------~-----------------~~kvs~n~~-----------R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e- 695 (881)
T KOG0128|consen 655 ----------E-----------------NFKVSPNEI-----------RDLIKIFVSNLSPKMSEEDLSERFSPSGTIE- 695 (881)
T ss_pred ----------h-----------------ccCcCchHH-----------HHHHHHHHhhcchhhcCchhhhhcCccchhh-
Confidence 0 001111111 1236789999999999999999999999988
Q ss_pred ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHH
Q psy2160 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 609 (773)
Q Consensus 530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~ 609 (773)
.+++....+.|+.+|.|++.|..++++.+||...+++.++ +
T Consensus 696 -------~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------K----------------------- 736 (881)
T KOG0128|consen 696 -------VVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------K----------------------- 736 (881)
T ss_pred -------hHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------h-----------------------
Confidence 5666544456899999999999999999999655544333 1
Q ss_pred HHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEec---CCCCCcEE
Q psy2160 610 KLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH---DKHPEGVA 686 (773)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~---~~~~~G~a 686 (773)
..|+|.|.+.... ++.++.+|+++|.++++.+. .+.|.|.|
T Consensus 737 -------------------------~~v~i~g~pf~gt-----------~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a 780 (881)
T KOG0128|consen 737 -------------------------ISVAISGPPFQGT-----------KEELKSLASKTGNVTSLRLVTVRAGKPKGKA 780 (881)
T ss_pred -------------------------hhhheeCCCCCCc-----------hHHHHhhccccCCccccchhhhhccccccce
Confidence 2377888876633 48999999999999987554 48899999
Q ss_pred EEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCccccc
Q psy2160 687 QIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725 (773)
Q Consensus 687 fV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~~ 725 (773)
+|.|.+..+|.+|+..+.+..+.-+.+.+..-++..+.+
T Consensus 781 ~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K~ 819 (881)
T KOG0128|consen 781 RVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDKK 819 (881)
T ss_pred eccCCCcchhhhhcccchhhhhhhcCccccccCCccccc
Confidence 999999999999999999999998888888766544333
No 113
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.88 E-value=7e-09 Score=82.30 Aligned_cols=56 Identities=29% Similarity=0.497 Sum_probs=50.0
Q ss_pred HHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160 517 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585 (773)
Q Consensus 517 L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a 585 (773)
|+++|++||.|. +|.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~--------~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVK--------KIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EE--------EEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 688999999998 68886553 589999999999999999999999999999999986
No 114
>KOG1996|consensus
Probab=98.88 E-value=1.9e-09 Score=108.92 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=71.3
Q ss_pred CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC--C---CCCcEEEEEecCHHHHHHHHHHhCCce
Q psy2160 633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--K---HPEGVAQIFFKEPEAADACRELLNGRW 707 (773)
Q Consensus 633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~--~---~~~G~afV~F~~~e~A~~Ai~~lnGr~ 707 (773)
+.++|.++||..+.++++ +|+.++.++|++||.|.+|.|+. + +..-.+||+|..+++|.+|+-.||||+
T Consensus 280 ptkvlllrnmVg~gevd~------elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRy 353 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDE------ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRY 353 (378)
T ss_pred chHHHHhhhhcCcccccH------HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCce
Confidence 458899999999887764 56799999999999999998875 2 123459999999999999999999999
Q ss_pred eCCeEEEEEEecC
Q psy2160 708 FGQRQITAETWDG 720 (773)
Q Consensus 708 f~Gr~l~v~~~dg 720 (773)
||||.+.+.||+-
T Consensus 354 FGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 354 FGGRVVSACFYNL 366 (378)
T ss_pred ecceeeeheeccH
Confidence 9999999999885
No 115
>KOG4307|consensus
Probab=98.85 E-value=6.3e-09 Score=115.70 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....+.|-+.|+|++++.++|.+||..|-.+-- +|.+.++.+ |..+|.|.|-|++.++|..|...|++..|+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~-------sI~~r~nd~-G~pTGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPN-------SIRIRRNDD-GVPTGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCC-------ceeEeecCC-CCcccceeEeecCHHHHHhhhhccccCccc
Confidence 344568999999999999999999999988863 588888776 999999999999999999999999999999
Q ss_pred CeEEEEEE
Q psy2160 577 GKKIKVER 584 (773)
Q Consensus 577 g~~i~V~~ 584 (773)
.+.|.|..
T Consensus 936 nr~V~l~i 943 (944)
T KOG4307|consen 936 NRVVSLRI 943 (944)
T ss_pred ceeEEEEe
Confidence 99998764
No 116
>KOG4208|consensus
Probab=98.79 E-value=1.2e-08 Score=99.12 Aligned_cols=81 Identities=20% Similarity=0.346 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhc-CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKC-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~-G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
+...-+||..+|.-..+.+|..+|..+ |.|.. ++|.|++.||+++|||||+|.+++.|.-|-+.||++.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r--------~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTR--------FRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEE--------EEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 366889999999999999999999988 77777 899999999999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q psy2160 292 GKKIKVERAK 301 (773)
Q Consensus 292 g~~I~V~~A~ 301 (773)
|+.|.|.+-.
T Consensus 119 e~lL~c~vmp 128 (214)
T KOG4208|consen 119 EHLLECHVMP 128 (214)
T ss_pred hheeeeEEeC
Confidence 9999997644
No 117
>KOG4307|consensus
Probab=98.79 E-value=1.1e-07 Score=106.13 Aligned_cols=463 Identities=14% Similarity=0.121 Sum_probs=248.6
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
+-++.+-|-+++++.+....+++++|...-.-. +.|..+.-.+...|-++|.|....++++|++ -|.+.+
T Consensus 307 vv~d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~---------~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~ 376 (944)
T KOG4307|consen 307 VVSDKYYNNYKGMEFNNDFNDGRKFFPGRNAQS---------TDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDD 376 (944)
T ss_pred ccchhheeeecccccccccchhhhhcCcccccc---------cchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhh
Confidence 334667777889999999999999998543322 4454454423347899999999999999998 677888
Q ss_pred cCeEEEEEeecccccCCC-----CCC--CCchhhhhHHHHHHHHHHHhh-hccCCCCccCCCCCCCCcEEEEecCCCccc
Q psy2160 291 RGKKIKVERAKFTMKGEA-----YDP--KLKPKKKRKKDLEKLKKAQEK-LFDWRPDKMRGERSKNESVIIVKNLFDPAL 362 (773)
Q Consensus 291 ~g~~I~V~~A~~~~k~~~-----~~p--~~~~~~~~~k~~~~~~k~~~k-~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~ 362 (773)
..|.+.|..+-...+.-+ ..+ ......-. .+.- .....+.......-....+|+|..| |..
T Consensus 377 ~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~---------p~~~pr~~~~~gq~vp~P~~ag~~lyv~~l--P~~ 445 (944)
T KOG4307|consen 377 VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGR---------PIAPPRAMVRPGQNVPFPGGAGGALYVFQL--PVM 445 (944)
T ss_pred hhcceeecCCCccccccCccccccCCCCcccccCCC---------CCCCcccccCCCCCCCCCCCccceEEeccC--Ccc
Confidence 899999876553211110 000 00000000 0000 0000000000112345678999999 333
Q ss_pred cchhhHHHHHHHHHHHHHhhccCCEEE-EEee---CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcc
Q psy2160 363 FDKDVTLILEYQQDLREECSKCGHVKK-VVLH---DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR 438 (773)
Q Consensus 363 ~~~d~~~~~ei~edL~e~f~k~G~V~~-V~i~---d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~ 438 (773)
... .++.+.|...-.|++ |.|- .+.-++.|||.|..++++..|...-+..+++.|.|.|........
T Consensus 446 t~~---------~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 446 TPI---------VPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred ccc---------cchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 322 678888988777776 5443 345688999999999999999887777788888898864332211
Q ss_pred cccchhHHHHHHHHHHHH-----HHhhhhhhh--------hh---hhccc---------CCCC----CCCCCCchHHhhh
Q psy2160 439 YKIQETAEEREARLKKWE-----TFLGKKIKV--------ER---AKFTM---------KGEA----YDPKLKPKKKRKK 489 (773)
Q Consensus 439 ~~~~~~~~e~~~r~~~~~-----~~l~~~~~~--------~~---~~~~~---------~G~~----~~p~~~~~~~r~~ 489 (773)
..+...+...++.++. ..|.+.... +. ..+.. .+.. ..|.+..+..+..
T Consensus 517 --~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~~~ 594 (944)
T KOG4307|consen 517 --MMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDRSR 594 (944)
T ss_pred --HHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccccCCccc
Confidence 1122222222222221 112211000 00 00000 0000 0011100000000
Q ss_pred --------hHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhc------------CcceeccCC-----------CceEE
Q psy2160 490 --------DLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKC------------GLVMKDVDT-----------NQMKI 538 (773)
Q Consensus 490 --------~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~------------G~I~~~~~~-----------~~~~i 538 (773)
..........-.++-|.|.|+....+.+.+-|+.- |.+. ++-. ..+.+
T Consensus 595 ~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~~~~~~~~sekn~Pa~~~~~~~~gv~~-~p~v~~~~~~~l~~~r~~~~ 673 (944)
T KOG4307|consen 595 SRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKDEELLEWFSEKNRPAKLTRTFYDGVAS-DPWVAEFSSESLMKRRSFGI 673 (944)
T ss_pred ccCccccCCCccccchhhhhhhcccCcceeecchhhhhhhcccCCcccccccccCCCCC-CcccccccccccccccCCCc
Confidence 00000001112466778888887777777777521 1111 1100 00000
Q ss_pred EEE----------ecC---CCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCC-------------
Q psy2160 539 KLY----------TDP---YTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE------------- 592 (773)
Q Consensus 539 ~l~----------~d~---~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~------------- 592 (773)
..+ .+. ..-...|.-+++|.+.-..+.||...+..++.+..+.+-.+.+...+.
T Consensus 674 g~l~tg~~lr~~~i~~~~~~~~~~~g~~~~e~~~~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs~~~~p~~p~p~~~gg 753 (944)
T KOG4307|consen 674 GTLCTGRTLRLRYIDNAKADEILKIGDVYGEGKRQMNEEAALQHEVAEKANPPSFFNAPAATRGSGPMPPLNPAPLPSGG 753 (944)
T ss_pred cccccCcccccchhhhhhhccccccccceeccCCccchhHHHHHHhhhhccCCCcccccccccccCCCCCCCCCCCCCCc
Confidence 000 000 012345778999999999999999999999988888877766542110
Q ss_pred c----------CC---CCCC---chh-hhH-HHHHHH-------HHHhh-----------hccC-------C--------
Q psy2160 593 A----------YD---PKLK---PKK-KRK-KDLEKL-------KKAQE-----------KLFD-------W-------- 621 (773)
Q Consensus 593 ~----------~~---~~~~---~~~-~k~-~~~~~~-------~~~~~-----------~~~~-------~-------- 621 (773)
. .+ +... +.. .+. .....- ...+. ...+ .
T Consensus 754 ~nG~~~p~pn~~NdGapg~g~~vp~~f~~gp~~~~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~rggp 833 (944)
T KOG4307|consen 754 QNGMNVPPPNGFNDGAPGRGGFVPRGFSQGPGMGRGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFRGGP 833 (944)
T ss_pred cCCCCCCCCCCCCCCCCCcCCcCCccccCCCCCCCCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccCCCC
Confidence 0 00 0000 000 000 000000 00000 0000 0
Q ss_pred -----CCcc--------cc---C-----CCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCcee-EEEec-
Q psy2160 622 -----RPDK--------MR---G-----ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK-KVVLH- 678 (773)
Q Consensus 622 -----~~~~--------~~---~-----~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~-~v~i~- 678 (773)
.+.. .. + ......++|-+.|++...+| +||.++|.-|-.+- +|.+.
T Consensus 834 p~~g~gpg~~~g~~p~~~~~P~~~~~~~~~~pGp~V~~~~n~Pf~v~l-----------~dI~~FF~dY~~~p~sI~~r~ 902 (944)
T KOG4307|consen 834 PGRGGGPGGFQGGSPGDDSQPSQELMELIKSPGPRVLSCNNFPFDVTL-----------EDIVEFFNDYEPDPNSIRIRR 902 (944)
T ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHhcCCCCCeEEEecCCCccccH-----------HHHHHHhcccccCCCceeEee
Confidence 0000 00 0 01133569999999887553 89999999987554 34443
Q ss_pred --CCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 679 --DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 679 --~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
++.+.|-+.|.|++.++|.+|..-|+++.+..|.|.+..
T Consensus 903 nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 903 NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 377889999999999999999999999999999998754
No 118
>KOG1995|consensus
Probab=98.78 E-value=4.5e-09 Score=110.12 Aligned_cols=91 Identities=25% Similarity=0.438 Sum_probs=87.0
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
+.+.+|||-+||..+++.+|.++|.+||+|..+-.|++|+|+||+|+.|+.+||.|.|.|.+...|+.||..+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeccc
Q psy2160 293 KKIKVERAKFT 303 (773)
Q Consensus 293 ~~I~V~~A~~~ 303 (773)
.+|+|..|...
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999887743
No 119
>KOG4208|consensus
Probab=98.68 E-value=4.9e-08 Score=94.94 Aligned_cols=84 Identities=18% Similarity=0.313 Sum_probs=76.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc-CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKC-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~-G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
......+||..+|..+-+.+|..+|.+| |.+. ++++.++..||.++|||||+|.+++.|.-|-+.||++.|
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~--------r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVT--------RFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeE--------EEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 3456789999999999999999999999 6666 788889999999999999999999999999999999999
Q ss_pred cCeEEEEEEcccc
Q psy2160 576 RGKKIKVERAKFT 588 (773)
Q Consensus 576 ~g~~i~V~~a~~~ 588 (773)
.|+.|.|..-...
T Consensus 118 ~e~lL~c~vmppe 130 (214)
T KOG4208|consen 118 MEHLLECHVMPPE 130 (214)
T ss_pred hhheeeeEEeCch
Confidence 9999999986643
No 120
>KOG0415|consensus
Probab=98.63 E-value=5.6e-08 Score=100.70 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
.++.+.|||..|.+-+|.++|.-+|++||.|. +|.|++|..||.+-.||||+|.+.+++.+|.-.|++..|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~--------sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIV--------SCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccce--------eeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 34678999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
.+.|+|.+++
T Consensus 308 DrRIHVDFSQ 317 (479)
T KOG0415|consen 308 DRRIHVDFSQ 317 (479)
T ss_pred cceEEeehhh
Confidence 9999999877
No 121
>KOG0415|consensus
Probab=98.60 E-value=6.4e-08 Score=100.27 Aligned_cols=84 Identities=21% Similarity=0.292 Sum_probs=79.5
Q ss_pred cCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 210 ~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
++.|.-+-|||..|.+-+|.++|.-+||.||.|.+ +.+++|..||.+-.||||+|.+.+++++|.-.|++..
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~s--------ceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVS--------CEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhccccee--------eeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 35677789999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecCeEEEEEeec
Q psy2160 290 IRGKKIKVERAK 301 (773)
Q Consensus 290 l~g~~I~V~~A~ 301 (773)
|..++|+|.++.
T Consensus 306 IDDrRIHVDFSQ 317 (479)
T KOG0415|consen 306 IDDRRIHVDFSQ 317 (479)
T ss_pred eccceEEeehhh
Confidence 999999998765
No 122
>KOG0128|consensus
Probab=98.60 E-value=4.2e-09 Score=120.32 Aligned_cols=235 Identities=23% Similarity=0.225 Sum_probs=172.0
Q ss_pred cEEEEcCCCCCCCHH-HHHHHHhhcCcccccccCCceeEEEEecCCCCCcce-EEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 216 TKVYVSNLPLDLTQE-EFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG-DALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 216 ~~VyV~nLP~~~te~-el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG-~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...++.++.+..... ..+..|..+|.|.. |++..... ....+ ++++.+....+++.|.. ..+..+.++
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vek--------v~~p~~g~-k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~ 641 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEK--------VNGPKRGF-KAHEQPQQQKVQSKHGSAESATV-PAGGALANR 641 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhccccccc--------ccCccccc-cccccchhhhhhccccchhhccc-ccccccCCc
Confidence 444556665555444 56778889999998 78776333 22223 88999999999999987 677778888
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.+.|..+....+.. ++...++ ..+...++|++|++....
T Consensus 642 ~~av~~ad~~~~~~--~~kvs~n----------------------------~~R~~~~~fvsnl~~~~~----------- 680 (881)
T KOG0128|consen 642 SAAVGLADAEEKEE--NFKVSPN----------------------------EIRDLIKIFVSNLSPKMS----------- 680 (881)
T ss_pred cccCCCCCchhhhh--ccCcCch----------------------------HHHHHHHHHHhhcchhhc-----------
Confidence 88876655332211 1111110 012234588889854433
Q ss_pred HHHHHHHhhccCCEEEEEee----CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~----d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
..+|...|..+|.+..|.+. .+..+|.||+.|..++++.+||....+..++
T Consensus 681 ~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------------------- 735 (881)
T KOG0128|consen 681 EEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------------------- 735 (881)
T ss_pred CchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-------------------------
Confidence 27899999999988866443 4567899999999999999999865443333
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCccee
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~ 529 (773)
...|+|+|+|+..|.++++.+|+.+|.+.
T Consensus 736 --------------------------------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~- 764 (881)
T KOG0128|consen 736 --------------------------------------------------KISVAISGPPFQGTKEELKSLASKTGNVT- 764 (881)
T ss_pred --------------------------------------------------hhhhheeCCCCCCchHHHHhhccccCCcc-
Confidence 24689999999999999999999999999
Q ss_pred ccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160 530 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585 (773)
Q Consensus 530 ~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a 585 (773)
+.+++.... |+++|.|+|.|.++.+|.+++...++..++-+.+.|...
T Consensus 765 -------~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 765 -------SLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred -------ccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 677888776 899999999999999999999888888777666666553
No 123
>KOG1995|consensus
Probab=98.55 E-value=5.5e-08 Score=102.07 Aligned_cols=92 Identities=26% Similarity=0.443 Sum_probs=88.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...+.+|||-+||..++...|.++|.+||.|..+..|++|.|.|++|.+|+.++|-|.|+|.++..|+.||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|..|+|.+|...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999999999854
No 124
>KOG4660|consensus
Probab=98.53 E-value=4.1e-07 Score=100.30 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=64.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...+|+|-|||.+|++++|+.+|+.||.|.. |+.-+.. +|..||+|.+..+|+.|++.|++..|.|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~--------ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIRE--------IRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhh--------hhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 5689999999999999999999999999998 7776544 57999999999999999999999999998
Q ss_pred EEE
Q psy2160 294 KIK 296 (773)
Q Consensus 294 ~I~ 296 (773)
.|.
T Consensus 141 ~~k 143 (549)
T KOG4660|consen 141 RIK 143 (549)
T ss_pred hhc
Confidence 888
No 125
>KOG0226|consensus
Probab=98.50 E-value=2.6e-07 Score=92.32 Aligned_cols=83 Identities=16% Similarity=0.282 Sum_probs=76.9
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
.+....+||++.|..+++.+-|...|.+|-.... .++++|+.||+++||+||.|.++.++..|+..|||..+
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~--------akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQK--------AKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhh--------ccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 3347799999999999999999999999998887 89999999999999999999999999999999999999
Q ss_pred cCeEEEEEeec
Q psy2160 291 RGKKIKVERAK 301 (773)
Q Consensus 291 ~g~~I~V~~A~ 301 (773)
+.++|....+.
T Consensus 258 gsrpiklRkS~ 268 (290)
T KOG0226|consen 258 GSRPIKLRKSE 268 (290)
T ss_pred ccchhHhhhhh
Confidence 99999986554
No 126
>KOG4661|consensus
Probab=98.49 E-value=2.8e-07 Score=100.49 Aligned_cols=87 Identities=21% Similarity=0.276 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|+|.+|...+.--+|+.+|++||.|. ..+|+++..+-..++|+||++.+.++|.++|..||-+.|+
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVv--------GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH 473 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVV--------GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH 473 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhccee--------ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc
Confidence 45678999999999999999999999999999 7999998776556899999999999999999999999999
Q ss_pred CeEEEEEEccccccC
Q psy2160 577 GKKIKVERAKFTMKG 591 (773)
Q Consensus 577 g~~i~V~~a~~~~~~ 591 (773)
|+.|.|+.|+....+
T Consensus 474 GrmISVEkaKNEp~G 488 (940)
T KOG4661|consen 474 GRMISVEKAKNEPGG 488 (940)
T ss_pred ceeeeeeecccCccc
Confidence 999999999976443
No 127
>KOG0533|consensus
Probab=98.44 E-value=5.3e-07 Score=92.20 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=75.0
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
++..++|+|.|||+.|+.++|.++|..||.+.. +-|..++. |.+.|.|-|.|...++|..|++.+++..+.
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r--------~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ld 150 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKR--------VAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALD 150 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceE--------EeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccC
Confidence 336699999999999999999999999998887 88889988 999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q psy2160 292 GKKIKVERAK 301 (773)
Q Consensus 292 g~~I~V~~A~ 301 (773)
|++|.+....
T Consensus 151 G~~mk~~~i~ 160 (243)
T KOG0533|consen 151 GRPMKIEIIS 160 (243)
T ss_pred CceeeeEEec
Confidence 9999997755
No 128
>KOG0129|consensus
Probab=98.42 E-value=2.3e-06 Score=93.73 Aligned_cols=159 Identities=20% Similarity=0.203 Sum_probs=107.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC-CC--Ccce---EEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TK--DFKG---DALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~-tg--~~kG---~AfV~F~~~esA~~Al~~lng 287 (773)
-.+.|||++||.+++|+.|...|..||.+.. -...... .+ -++| |+|+.|.++.++..-|..+-.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V---------dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV---------DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe---------ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 6789999999999999999999999999984 3332111 01 2466 999999999998776654432
Q ss_pred ceecCeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCc-----cCCCCCCCCcEEEEecCCCccc
Q psy2160 288 YEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK-----MRGERSKNESVIIVKNLFDPAL 362 (773)
Q Consensus 288 ~~l~g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~-----~~~~~~~~~~~v~l~Nl~~p~~ 362 (773)
.-.+-.+.|.......+. -++.-|..-+ .........+||||+.++.|..
T Consensus 329 -~~~~~yf~vss~~~k~k~------------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~ 383 (520)
T KOG0129|consen 329 -GEGNYYFKVSSPTIKDKE------------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLT 383 (520)
T ss_pred -cccceEEEEecCcccccc------------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCcch
Confidence 111222333222211110 0111222111 1122345678999999977755
Q ss_pred cchhhHHHHHHHHHHHHHhh-ccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHH
Q psy2160 363 FDKDVTLILEYQQDLREECS-KCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACREL 417 (773)
Q Consensus 363 ~~~d~~~~~ei~edL~e~f~-k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~ 417 (773)
. ++|..+|. -||.|..|-|.. +-+.|.|-|.|.+..+-.+||.+
T Consensus 384 A-----------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 384 A-----------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred H-----------HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 3 77999998 599999887753 34899999999999999999884
No 129
>KOG4661|consensus
Probab=98.41 E-value=4.9e-07 Score=98.65 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...+|||++|...+...+|..+|++||.|.- .+++.+..+--.++|+||++.+.++|.+||..|+.+.|.|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvG--------AKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr 475 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVG--------AKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR 475 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceec--------eeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce
Confidence 5689999999999999999999999999998 89999987777799999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
.|.|+.|+-.
T Consensus 476 mISVEkaKNE 485 (940)
T KOG4661|consen 476 MISVEKAKNE 485 (940)
T ss_pred eeeeeecccC
Confidence 9999998854
No 130
>KOG0129|consensus
Probab=98.36 E-value=5e-06 Score=91.14 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=109.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CCCCcc---eEEEEeCChHHHHHHHHHhCCc
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKDFKG---DALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg~~kG---~afV~f~~~e~A~~Ai~~lng~ 573 (773)
.-.+.|||++||+++++++|...|..||.+..|+... .... .-.++| |+|+.|.++.+++.-+....-
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k-------~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~- 328 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGK-------ANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE- 328 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCC-------ccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-
Confidence 4568999999999999999999999999998443220 0100 012456 999999999888876655433
Q ss_pred eecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCcc----c-cCCCCCCCcEEEEecCCCcccc
Q psy2160 574 EIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK----M-RGERSKNESVIIVKNLFDPALF 648 (773)
Q Consensus 574 ~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~l~ikNl~~~~~~ 648 (773)
....+.+.......+... -+...|.... + .....-+.++|+|..|+.+ +
T Consensus 329 --~~~~~yf~vss~~~k~k~----------------------VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprp--l 382 (520)
T KOG0129|consen 329 --GEGNYYFKVSSPTIKDKE----------------------VQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRP--L 382 (520)
T ss_pred --cccceEEEEecCcccccc----------------------eeEEeeEeccchhhhccCcccCccceEEecCCCCc--c
Confidence 433333332221111000 1222332211 1 1122345799999999988 5
Q ss_pred ccchhhHHHHHHHHHHHHh-cCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHH
Q psy2160 649 DKDVTLILEYQQDLREECS-KCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACREL 702 (773)
Q Consensus 649 ~~d~~~~~~l~edl~~~f~-~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~ 702 (773)
.. ++|..+|. -||.|.-+-|.- +.|+|-|-|.|.+..+=.+||.+
T Consensus 383 ~A---------~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 383 TA---------EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred hH---------HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 54 88999998 699999887753 78999999999999999999886
No 131
>KOG0132|consensus
Probab=98.35 E-value=7.7e-07 Score=100.99 Aligned_cols=74 Identities=20% Similarity=0.422 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
-.+||||++||..+++.+|..+|+.||.|. +|.|+.. +|||||++.+..+|.+|+..|++..+.++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiq--------Si~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQ--------SIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccce--------eEeeccC------CceeEEEEeehhHHHHHHHHHhcccccce
Confidence 458999999999999999999999999999 7877643 89999999999999999999999999999
Q ss_pred EEEEEEcc
Q psy2160 579 KIKVERAK 586 (773)
Q Consensus 579 ~i~V~~a~ 586 (773)
.|+|.||.
T Consensus 486 ~Iki~Wa~ 493 (894)
T KOG0132|consen 486 TIKIAWAV 493 (894)
T ss_pred eeEEeeec
Confidence 99999997
No 132
>KOG0132|consensus
Probab=98.33 E-value=8.5e-07 Score=100.64 Aligned_cols=74 Identities=22% Similarity=0.414 Sum_probs=69.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
-++||||++||..+++.+|..+|..||.|.+ |.|+. ++|+|||+..+..+|.+|+..|.+..+.++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqS--------i~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k 485 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQS--------IILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADK 485 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhccccee--------Eeecc------CCceeEEEEeehhHHHHHHHHHhcccccce
Confidence 5799999999999999999999999999998 88753 478999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
.|+|.+|.
T Consensus 486 ~Iki~Wa~ 493 (894)
T KOG0132|consen 486 TIKIAWAV 493 (894)
T ss_pred eeEEeeec
Confidence 99999987
No 133
>KOG0153|consensus
Probab=98.28 E-value=1.7e-06 Score=90.11 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=67.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH-HhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS-ILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~-~lng~~i~ 576 (773)
...++|||+||-..+++.+|+++|.+||.|. +|.+... +++|||+|.+.++|+.|.. .+|...|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeir--------si~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIR--------SIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCee--------eEEeecc------cccceeeehhhHHHHHHHHhhcceeeec
Confidence 4568999999988999999999999999999 7888754 6799999999999999875 45667789
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|.+|.|.|+..
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999999985
No 134
>KOG4209|consensus
Probab=98.28 E-value=1e-06 Score=90.44 Aligned_cols=81 Identities=26% Similarity=0.381 Sum_probs=76.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..+.|||+|+.+.+|.+++..+|+.||.|.. |.|..|..+|.++|||||.|.+.+.+..|+. ||+..|.|+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~--------~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~ 170 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINR--------VTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP 170 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccc--------eeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc
Confidence 6799999999999999999999999999998 9999999988999999999999999999999 999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
.|.|.+....
T Consensus 171 ~i~vt~~r~~ 180 (231)
T KOG4209|consen 171 AIEVTLKRTN 180 (231)
T ss_pred cceeeeeeee
Confidence 9999876643
No 135
>KOG0533|consensus
Probab=98.27 E-value=2.5e-06 Score=87.25 Aligned_cols=81 Identities=22% Similarity=0.374 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...+.|+|.|||..|+.++|+++|..||.+. .+-|-+|+. |.+.|.|-|.|...++|..|++.+||..+.|
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~--------r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG 151 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELK--------RVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDG 151 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccce--------EEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCC
Confidence 3458899999999999999999999999887 788888886 9999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.+.....
T Consensus 152 ~~mk~~~i~~ 161 (243)
T KOG0533|consen 152 RPMKIEIISS 161 (243)
T ss_pred ceeeeEEecC
Confidence 9999887763
No 136
>KOG4454|consensus
Probab=98.26 E-value=3.1e-07 Score=89.72 Aligned_cols=150 Identities=21% Similarity=0.318 Sum_probs=120.1
Q ss_pred CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC--CCeEEEEEecCHHHHHHHHHHhCCcccC
Q psy2160 347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH--PEGVAQIFFKEPEAADACRELLNGRWFG 424 (773)
Q Consensus 347 ~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~--~~G~afV~F~~~e~A~~Ai~~lng~~~~ 424 (773)
...++|+|.||.+- ++ ++-|.++|-..|+|.+|.|++.. ...+|||.|.+.-+..-|+++|||..+.
T Consensus 7 e~drtl~v~n~~~~--v~---------eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSG--VS---------EELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred chhhHHHHHhhhhh--hh---------HHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 45789999999433 22 26788999999999999998632 2339999999999999999999999998
Q ss_pred CeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEE
Q psy2160 425 QRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVY 504 (773)
Q Consensus 425 Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~ 504 (773)
++.+.+.+..|.. ..
T Consensus 76 ~~e~q~~~r~G~s--------------------------------------------------------------ha--- 90 (267)
T KOG4454|consen 76 EDEEQRTLRCGNS--------------------------------------------------------------HA--- 90 (267)
T ss_pred cchhhcccccCCC--------------------------------------------------------------cc---
Confidence 8888886544322 00
Q ss_pred EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEE
Q psy2160 505 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 583 (773)
Q Consensus 505 V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~ 583 (773)
-|...++.+.+..+|+..|.|. .+++.++.+ |+++.++|++|...-+.-.|+....+....-+++.+.
T Consensus 91 --pld~r~~~ei~~~v~s~a~p~~--------~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~g 158 (267)
T KOG4454|consen 91 --PLDERVTEEILYEVFSQAGPIE--------GVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTIG 158 (267)
T ss_pred --hhhhhcchhhheeeecccCCCC--------Ccccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCCCcccc
Confidence 1455688999999999999998 688888876 8899999999999999999998888887776666555
No 137
>KOG4454|consensus
Probab=98.24 E-value=2.7e-07 Score=90.17 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
-..+|||.||-..++++-|.++|-..|+|.. |.|..+.+ ++.+ ||||.|.++-++..|++++||..+.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~k--------v~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~ 77 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYK--------VGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEED 77 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEE--------EeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccc
Confidence 5589999999999999999999999999998 99998888 8888 999999999999999999999999999
Q ss_pred EEEEEe
Q psy2160 294 KIKVER 299 (773)
Q Consensus 294 ~I~V~~ 299 (773)
.|.|.+
T Consensus 78 e~q~~~ 83 (267)
T KOG4454|consen 78 EEQRTL 83 (267)
T ss_pred hhhccc
Confidence 998855
No 138
>KOG0226|consensus
Probab=98.20 E-value=2.2e-06 Score=85.82 Aligned_cols=132 Identities=17% Similarity=0.280 Sum_probs=103.7
Q ss_pred CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCC
Q psy2160 396 HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGE 475 (773)
Q Consensus 396 ~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~ 475 (773)
.-.+.+|+.|.....-.++-..-+++.++.++|+..- |.. |
T Consensus 138 ~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~--gts-----------------w-------------------- 178 (290)
T KOG0226|consen 138 PIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA--GTS-----------------W-------------------- 178 (290)
T ss_pred ccCcccccCcchhhhhhhhccccccccccCcceeecc--ccc-----------------c--------------------
Confidence 3467889999887777777666677777776655421 111 0
Q ss_pred CCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEE
Q psy2160 476 AYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555 (773)
Q Consensus 476 ~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV 555 (773)
.+|++ ..-.....+||.+-|..+++.+-|...|.+|-... ..++++|..||+++||+||
T Consensus 179 -edPsl------------~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~--------~akviRdkRTgKSkgygfV 237 (290)
T KOG0226|consen 179 -EDPSL------------AEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQ--------KAKVIRDKRTGKSKGYGFV 237 (290)
T ss_pred -CCccc------------ccCccccceeecccccccccHHHHHHHHHhccchh--------hccccccccccccccceee
Confidence 01111 01123457899999999999999999999999988 7899999999999999999
Q ss_pred EeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 556 TYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 556 ~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.|.++.++..|+..|||..++.++|.+.....
T Consensus 238 Sf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 238 SFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred eecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 99999999999999999999999998876553
No 139
>KOG0153|consensus
Probab=98.16 E-value=5e-06 Score=86.80 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=66.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH-HcCCceec
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS-ILDGYEIR 291 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~-~lng~~l~ 291 (773)
...++|||+||-..+++.+|+++|-+||.|.. |.+... +|+|||+|.+.++|++|.. .+|...|.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirs--------i~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRS--------IRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeee--------EEeecc------cccceeeehhhHHHHHHHHhhcceeeec
Confidence 37899999999889999999999999999998 888754 3599999999999998775 46766789
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|.+|.|.+...
T Consensus 292 G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 292 GFRLKIKWGRP 302 (377)
T ss_pred ceEEEEEeCCC
Confidence 99999987664
No 140
>KOG1996|consensus
Probab=98.13 E-value=2.8e-06 Score=86.30 Aligned_cols=80 Identities=28% Similarity=0.478 Sum_probs=69.3
Q ss_pred CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCC-----CCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH-----PEGVAQIFFKEPEAADACRELLNGRWF 423 (773)
Q Consensus 349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~-----~~G~afV~F~~~e~A~~Ai~~lng~~~ 423 (773)
.++|.++||..+.+.++ ++..++.++|.+||.|.+|.|+.-. ..--.||+|...++|.+|+-.|||++|
T Consensus 281 tkvlllrnmVg~gevd~------elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF 354 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDE------ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF 354 (378)
T ss_pred hHHHHhhhhcCcccccH------HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee
Confidence 67899999999988776 4678999999999999999887432 233589999999999999999999999
Q ss_pred CCeeEEEEecC
Q psy2160 424 GQRQITAETWD 434 (773)
Q Consensus 424 ~Gr~I~v~~~~ 434 (773)
+||.+.+.++.
T Consensus 355 GGr~v~A~Fyn 365 (378)
T KOG1996|consen 355 GGRVVSACFYN 365 (378)
T ss_pred cceeeeheecc
Confidence 99999998864
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.11 E-value=1.7e-05 Score=69.76 Aligned_cols=82 Identities=20% Similarity=0.178 Sum_probs=70.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR---- 576 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~---- 576 (773)
|+|.|+|||...|.+.|.+++.....=.+| -+-|+.|..++.+.|||||.|.+++.|..-.+.++|....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yD------F~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s 75 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYD------FFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNS 75 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcce------EEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCC
Confidence 799999999999999999999875433333 6889999998999999999999999999999999999876
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
.+...|.+|..+
T Consensus 76 ~Kvc~i~yAriQ 87 (97)
T PF04059_consen 76 KKVCEISYARIQ 87 (97)
T ss_pred CcEEEEehhHhh
Confidence 456688888743
No 142
>KOG0116|consensus
Probab=98.08 E-value=7e-06 Score=90.61 Aligned_cols=81 Identities=22% Similarity=0.299 Sum_probs=65.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
...+|||+|||.+++.++|.++|+.||.|.. ..|....--++..+||||+|.+.+++..||.. +-..|.++
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~--------~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~ 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKE--------GGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGR 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccc--------cceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCe
Confidence 4566999999999999999999999999998 45544331144449999999999999999984 56678899
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
++.|+--...
T Consensus 358 kl~Veek~~~ 367 (419)
T KOG0116|consen 358 KLNVEEKRPG 367 (419)
T ss_pred eEEEEecccc
Confidence 9999765543
No 143
>KOG4209|consensus
Probab=98.08 E-value=4.4e-06 Score=85.70 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=76.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....+.+||+|+...+|.+++...|+.||.|. .+.|..|..+|.++|||||.|.+.+.+..|+. |||..|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~--------~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~ 168 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGIN--------RVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP 168 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCcc--------ceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc
Confidence 45678999999999999999999999999998 78999999988999999999999999999997 9999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+..-
T Consensus 169 ~~~i~vt~~r~ 179 (231)
T KOG4209|consen 169 GPAIEVTLKRT 179 (231)
T ss_pred cccceeeeeee
Confidence 99999998763
No 144
>KOG4210|consensus
Probab=98.04 E-value=4.2e-06 Score=88.76 Aligned_cols=173 Identities=18% Similarity=0.187 Sum_probs=123.2
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWF 423 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~ 423 (773)
...+.+++++-.... . .+...++..+|.+..+.+.. ..+.|++++.|...+.+..|+........
T Consensus 87 ~~~~~f~g~~s~~~e--~---------~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~ 155 (285)
T KOG4210|consen 87 SSSTFFVGELSENIE--E---------SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL 155 (285)
T ss_pred ccccccccccccchh--h---------ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc
Confidence 456677777722222 1 34566777788666543321 34789999999999999999985444455
Q ss_pred CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160 424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503 (773)
Q Consensus 424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l 503 (773)
.++.+...+......+ +.. ...........++
T Consensus 156 ~~~~~~~dl~~~~~~~-------------------------------------------~~n-----~~~~~~~~~s~~~ 187 (285)
T KOG4210|consen 156 DGNKGEKDLNTRRGLR-------------------------------------------PKN-----KLSRLSSGPSDTI 187 (285)
T ss_pred ccccccCccccccccc-------------------------------------------ccc-----hhcccccCccccc
Confidence 6666555432211100 000 0000111233444
Q ss_pred E-EcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160 504 Y-VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 582 (773)
Q Consensus 504 ~-V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V 582 (773)
| |+||+.++++++|+.+|..+|.|. .+++..++.+|.++|+|+|.|.....+.+|+.. ....+.|+++.+
T Consensus 188 ~~~~~~~f~~~~d~~~~~~~~~~~i~--------~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 188 FFVGELDFSLTRDDLKEHFVSSGEIT--------SVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred eeecccccccchHHHhhhccCcCcce--------eeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 4 999999999999999999999999 899999999999999999999999999999977 888899999999
Q ss_pred EEcccc
Q psy2160 583 ERAKFT 588 (773)
Q Consensus 583 ~~a~~~ 588 (773)
......
T Consensus 259 ~~~~~~ 264 (285)
T KOG4210|consen 259 EEDEPR 264 (285)
T ss_pred ccCCCC
Confidence 988753
No 145
>KOG0151|consensus
Probab=97.98 E-value=1.2e-05 Score=90.50 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=75.0
Q ss_pred CccCCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHH
Q psy2160 208 WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSI 284 (773)
Q Consensus 208 ~~~~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~ 284 (773)
....+|..|+|||+||++.+++..|...|..||+|.. |+|+.-.. ..+.+-+|||.|-+..+|+.|++.
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlas--------vKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~ 238 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLAS--------VKIMWPRTEEEKRRERNCGFVAFMNRADAERALKE 238 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccc--------eeeecccchhhhccccccceeeehhhhhHHHHHHH
Confidence 3345889999999999999999999999999999999 88765432 234566899999999999999999
Q ss_pred cCCceecCeEEEEEeec
Q psy2160 285 LDGYEIRGKKIKVERAK 301 (773)
Q Consensus 285 lng~~l~g~~I~V~~A~ 301 (773)
|+|..+.++.|++.+++
T Consensus 239 lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 239 LQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hcceeeeeeeeeecccc
Confidence 99999999999998875
No 146
>KOG0116|consensus
Probab=97.96 E-value=1.5e-05 Score=88.11 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=66.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
...+|||+|||++++..+|.++|..||.|..+ .|.+.. +. +...+||||+|.+.++++.||. .+-..++|+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~------~I~vr~-~~-~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~ 357 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEG------GIQVRS-PG-GKNPCFGFVEFENAAAVQNAIE-ASPLEIGGR 357 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhccccccc------ceEEec-cC-CCcCceEEEEEeecchhhhhhh-cCccccCCe
Confidence 34569999999999999999999999999954 455544 22 3344999999999999999996 457788999
Q ss_pred EEEEEEcccc
Q psy2160 579 KIKVERAKFT 588 (773)
Q Consensus 579 ~i~V~~a~~~ 588 (773)
+|.|+.-+..
T Consensus 358 kl~Veek~~~ 367 (419)
T KOG0116|consen 358 KLNVEEKRPG 367 (419)
T ss_pred eEEEEecccc
Confidence 9999976643
No 147
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.95 E-value=4.7e-05 Score=67.04 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=67.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhc--CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec--
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-- 291 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~--G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~-- 291 (773)
|||-|+|||...|.++|.+++... |...- +-|+.|..++.+.|||||.|.+++.|..-.+.++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF--------~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~ 73 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDF--------FYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNF 73 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceE--------EEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccC
Confidence 899999999999999999988753 44444 778899888999999999999999999999999999875
Q ss_pred --CeEEEEEeeccc
Q psy2160 292 --GKKIKVERAKFT 303 (773)
Q Consensus 292 --g~~I~V~~A~~~ 303 (773)
.+...|.+|+.+
T Consensus 74 ~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 74 NSKKVCEISYARIQ 87 (97)
T ss_pred CCCcEEEEehhHhh
Confidence 356677777643
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=5e-05 Score=63.73 Aligned_cols=72 Identities=24% Similarity=0.270 Sum_probs=51.9
Q ss_pred cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy2160 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713 (773)
Q Consensus 635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l 713 (773)
..|+|.|||...+ + ..|+.-|+.++..|| .|..|. .|.|+|+|.+++.|.+|...|+|..+-|++|
T Consensus 3 s~L~V~NLP~~~d----~---~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKD----P---SSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-----H---HHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCC----H---HHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5799999986432 2 456789999999998 676653 3789999999999999999999999999999
Q ss_pred EEEEec
Q psy2160 714 TAETWD 719 (773)
Q Consensus 714 ~v~~~d 719 (773)
.|+|..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999953
No 149
>KOG0151|consensus
Probab=97.94 E-value=1.4e-05 Score=90.04 Aligned_cols=81 Identities=16% Similarity=0.297 Sum_probs=72.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecC---CCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP---YTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~---~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
+..++|||+||++.++++.|...|.+||+|. +++|+--+ +..+.+.||||.|.+..+|++|+..|+|..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPla--------svKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLA--------SVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCccc--------ceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 4578999999999999999999999999999 78876433 224457899999999999999999999999
Q ss_pred ecCeEEEEEEcc
Q psy2160 575 IRGKKIKVERAK 586 (773)
Q Consensus 575 i~g~~i~V~~a~ 586 (773)
+.+..|++.|++
T Consensus 244 v~~~e~K~gWgk 255 (877)
T KOG0151|consen 244 VMEYEMKLGWGK 255 (877)
T ss_pred eeeeeeeecccc
Confidence 999999999985
No 150
>KOG0112|consensus
Probab=97.94 E-value=6.8e-06 Score=95.02 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=127.4
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
....+.+||++||+..+++.+|+..|..+|.|. .|.|-+-.. +.-.-||||.|.+...+-.|...+.+..|
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve--------~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I 438 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVE--------EVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLI 438 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhcccc--------ccccccCCC-CcccchhhhhhhccccCcccchhhcCCcc
Confidence 345679999999999999999999999999998 455544322 33467999999999999999999999888
Q ss_pred cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160 576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLI 655 (773)
Q Consensus 576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~ 655 (773)
....+++.+... .....+-+++..|..-..
T Consensus 439 ~~g~~r~glG~~------------------------------------------kst~ttr~~sgglg~w~p-------- 468 (975)
T KOG0112|consen 439 GNGTHRIGLGQP------------------------------------------KSTPTTRLQSGGLGPWSP-------- 468 (975)
T ss_pred ccCccccccccc------------------------------------------ccccceeeccCCCCCCCh--------
Confidence 755555554431 011245677777743211
Q ss_pred HHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC--CeEEEEEEecCccc
Q psy2160 656 LEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG--QRQITAETWDGKTR 723 (773)
Q Consensus 656 ~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~--Gr~l~v~~~dgk~~ 723 (773)
...|..+|..||.|..|.+..+ .-+++|.|.++..|..|+..|-|..|+ .|+|.|.|......
T Consensus 469 ---~~~l~r~fd~fGpir~Idy~hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 469 ---VSRLNREFDRFGPIRIIDYRHG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred ---HHHHHHHhhccCcceeeecccC--CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 3788899999999998887554 478999999999999999999999997 57899988665443
No 151
>KOG2202|consensus
Probab=97.92 E-value=5.2e-06 Score=83.69 Aligned_cols=63 Identities=33% Similarity=0.503 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHh-cCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 655 ILEYQQDLREECS-KCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 655 ~~~l~edl~~~f~-~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
+.+.-++|..+|+ +||.|..+.|.+ .+-.|-++|+|...++|.+|+..|||+||+|++|++.|
T Consensus 78 ~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 78 EDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 4455688888888 999999998877 45578899999999999999999999999999999998
No 152
>KOG0112|consensus
Probab=97.86 E-value=1.1e-05 Score=93.31 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=123.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+.+||++||+..+++.+|+..|..+|.|.+ |.|-+-.- +.-.-||||.|.+...+-.|...+-+..|...
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~--------VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEE--------VDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccc--------cccccCCC-CcccchhhhhhhccccCcccchhhcCCccccC
Confidence 7899999999999999999999999999988 77665544 55567999999999999999888887777554
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.+++.... +. ....+-++++++ .++..
T Consensus 442 ~~r~glG~---------~k---------------------------------st~ttr~~sggl-g~w~p---------- 468 (975)
T KOG0112|consen 442 THRIGLGQ---------PK---------------------------------STPTTRLQSGGL-GPWSP---------- 468 (975)
T ss_pred cccccccc---------cc---------------------------------cccceeeccCCC-CCCCh----------
Confidence 44442211 11 223455777777 34332
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC--eeEEEEecCCC
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAETWDGK 436 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G--r~I~v~~~~~~ 436 (773)
+..+..+|..||.|..|.+. |...|+||.+.+...++.|+..|.|..|+| +.+.|.++...
T Consensus 469 ~~~l~r~fd~fGpir~Idy~--hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 469 VSRLNREFDRFGPIRIIDYR--HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HHHHHHHhhccCcceeeecc--cCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 26788999999999987653 558899999999999999999999999986 67888776543
No 153
>KOG4676|consensus
Probab=97.84 E-value=2.7e-06 Score=89.70 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=61.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
-.|-|.||.+++|.++++.+|.-.|.|.+ ++||.+.+ .......|||.|.+..+|..|-- |-++.|-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~e--------lrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvd 78 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPE--------LRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVD 78 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhcccccc--------ccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeee
Confidence 37899999999999999999999999998 99998554 12346789999999999988864 77777777
Q ss_pred eEEEEE
Q psy2160 293 KKIKVE 298 (773)
Q Consensus 293 ~~I~V~ 298 (773)
+-|.|-
T Consensus 79 raliv~ 84 (479)
T KOG4676|consen 79 RALIVR 84 (479)
T ss_pred eeEEEE
Confidence 766663
No 154
>KOG4210|consensus
Probab=97.72 E-value=3.2e-05 Score=82.13 Aligned_cols=174 Identities=19% Similarity=0.224 Sum_probs=126.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..+++|++++-..+.+.++..++..+|... ...+........++|++.+.|...+.+..|+...-...+.++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~--------~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRV--------DARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN 158 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcc--------cchhhhhccccccccceeeccccHHHHHHHHHhhhccccccc
Confidence 468999999999999999999999999876 455555555578999999999999999999964443455666
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.+.......-. ..+. ... ............++.|+... ++
T Consensus 159 ~~~~dl~~~~~--------~~~~--------------n~~-------~~~~~~~s~~~~~~~~~~f~--~~--------- 198 (285)
T KOG4210|consen 159 KGEKDLNTRRG--------LRPK--------------NKL-------SRLSSGPSDTIFFVGELDFS--LT--------- 198 (285)
T ss_pred cccCccccccc--------cccc--------------chh-------cccccCccccceeecccccc--cc---------
Confidence 55554443110 0000 000 00011122345558888655 33
Q ss_pred HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
+++|..+|..+|.|..|.++. +...|+++|.|.....+..|+.. .++.++|+.+.+.+-+..
T Consensus 199 ~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 199 RDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 378889999999999998876 55678999999999999999998 899999999999885544
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.70 E-value=0.00016 Score=60.83 Aligned_cols=70 Identities=24% Similarity=0.438 Sum_probs=48.5
Q ss_pred CCEEEEcCCCCCCCHHH----HHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 500 NTKVYVSNLPLDLTQEE----FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~----L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
.+.|+|.|||.+.+... |+.++..||.-. +.|. .+.|+|.|.+++.|.+|...|+|..+
T Consensus 2 ~s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkV---------l~v~--------~~tAilrF~~~~~A~RA~KRmegEdV 64 (90)
T PF11608_consen 2 HSLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKV---------LSVS--------GGTAILRFPNQEFAERAQKRMEGEDV 64 (90)
T ss_dssp SEEEEEES--TTS-HHHHHHHHHHHHHTTT--E---------EE----------TT-EEEEESSHHHHHHHHHHHTT--S
T ss_pred ccEEEEecCCCCCCHHHHHHHHHHHhhccCCEE---------EEEe--------CCEEEEEeCCHHHHHHHHHhhccccc
Confidence 35799999999988655 566677898754 3332 46899999999999999999999999
Q ss_pred cCeEEEEEEcc
Q psy2160 576 RGKKIKVERAK 586 (773)
Q Consensus 576 ~g~~i~V~~a~ 586 (773)
.|++|.|++..
T Consensus 65 fG~kI~v~~~~ 75 (90)
T PF11608_consen 65 FGNKISVSFSP 75 (90)
T ss_dssp SSS--EEESS-
T ss_pred ccceEEEEEcC
Confidence 99999999875
No 156
>KOG4660|consensus
Probab=97.67 E-value=2.8e-05 Score=86.09 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=63.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
....+|+|-|||.+|+.++|+.+|+.||.|. .|+.-+. .+|..||+|-+.-+|+.|++.|++.+|.|
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir--------~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIR--------EIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchh--------hhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 4568999999999999999999999999998 3554433 47899999999999999999999999999
Q ss_pred eEEE
Q psy2160 578 KKIK 581 (773)
Q Consensus 578 ~~i~ 581 (773)
+.|.
T Consensus 140 ~~~k 143 (549)
T KOG4660|consen 140 KRIK 143 (549)
T ss_pred hhhc
Confidence 8877
No 157
>KOG2193|consensus
Probab=97.31 E-value=5.1e-05 Score=80.85 Aligned_cols=151 Identities=18% Similarity=0.262 Sum_probs=114.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc-eecCeE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK 579 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~-~i~g~~ 579 (773)
+.+|++||.+.++..+|..+|...-.-. +-.++. -.|||||.+.+..-|.+|++.++|. .+.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~--------~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPG--------SGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCC--------Ccceee------ecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 5799999999999999999998541111 011221 2689999999999999999999997 467999
Q ss_pred EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160 580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 659 (773)
Q Consensus 580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ 659 (773)
+.|...... +.+ ++.+.|+|++.. +. .
T Consensus 68 ~e~~~sv~k-------------kqr-----------------------------srk~Qirnippq--l~---------w 94 (584)
T KOG2193|consen 68 QEVEHSVPK-------------KQR-----------------------------SRKIQIRNIPPQ--LQ---------W 94 (584)
T ss_pred eeccchhhH-------------HHH-----------------------------hhhhhHhcCCHH--HH---------H
Confidence 988876521 111 244778888644 22 3
Q ss_pred HHHHHHHhcCCceeEEEecC-CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160 660 QDLREECSKCGHVKKVVLHD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW 718 (773)
Q Consensus 660 edl~~~f~~fG~V~~v~i~~-~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~ 718 (773)
+-|..+...||.|.++.... .....++-|.|.+.+.+..||..|||-.|....+.+.|-
T Consensus 95 evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 95 EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 66777888999999986543 222456778899999999999999999999999998883
No 158
>KOG2202|consensus
Probab=97.31 E-value=8.6e-05 Score=75.09 Aligned_cols=62 Identities=34% Similarity=0.531 Sum_probs=54.2
Q ss_pred HHHHHHHHHhh-ccCCEEEEEeeCC---CCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEec
Q psy2160 372 EYQQDLREECS-KCGHVKKVVLHDK---HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW 433 (773)
Q Consensus 372 ei~edL~e~f~-k~G~V~~V~i~d~---~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~ 433 (773)
+.-++|..+|+ +||+|..+.+.++ |-.|-+||.|...++|++|+..|||++|+|++|.+.+.
T Consensus 80 efyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 80 EFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 33478888888 8999999987765 45788999999999999999999999999999999864
No 159
>KOG4676|consensus
Probab=97.11 E-value=0.0012 Score=70.17 Aligned_cols=188 Identities=14% Similarity=0.165 Sum_probs=114.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---CCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...|.|.||.+.+|.++++.+|.-.|.|. .++||.+... ......|||.|.+..++..|. +|.++.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~--------elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfv 77 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIP--------ELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFV 77 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccc--------cccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceee
Confidence 34899999999999999999999999998 6888876531 123457999999999999997 79999999
Q ss_pred CeEEEEEEccccccC----------CcCCCCCCchhhh---HHHHHHHHHHhhhccCCCCccccC----CCCCCCcEEEE
Q psy2160 577 GKKIKVERAKFTMKG----------EAYDPKLKPKKKR---KKDLEKLKKAQEKLFDWRPDKMRG----ERSKNESVIIV 639 (773)
Q Consensus 577 g~~i~V~~a~~~~~~----------~~~~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~i 639 (773)
++.|.|-++-..... .+..|.+.+-... ...+..+ .+...+.--.|...+. ....-.+++++
T Consensus 78 draliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~-nh~p~ailktP~Lp~~~~A~kleeirRt~~v 156 (479)
T KOG4676|consen 78 DRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKI-NHSPNAILKTPELPPQAAAKKLEEIRRTREV 156 (479)
T ss_pred eeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccc-cCCccceecCCCCChHhhhhhhHHHHhhhhh
Confidence 999888876532111 0111110000000 0000000 0000000000000000 00001245666
Q ss_pred ecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC
Q psy2160 640 KNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 709 (773)
Q Consensus 640 kNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~ 709 (773)
.+|..... ..++-+.|..+|.|...++..+...-.+.|.|....+..+|+.. +|+.|.
T Consensus 157 ~sl~~~~~-----------l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 157 QSLISAAI-----------LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hcchhhhc-----------chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 66644321 26777889999999877766655556677999999888888876 677775
No 160
>KOG2314|consensus
Probab=97.10 E-value=0.0014 Score=72.72 Aligned_cols=109 Identities=14% Similarity=0.199 Sum_probs=81.8
Q ss_pred CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeC-
Q psy2160 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG- 709 (773)
Q Consensus 634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~- 709 (773)
..+|+|-|+|-- .+..+..|+.-|...|+++|.|.++.++. +...|++|+.|.+..+|..|++.|||..|+
T Consensus 58 D~vVvv~g~PvV-----~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 58 DSVVVVDGAPVV-----GPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred ceEEEECCCccc-----ChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 579999999753 23347888999999999999999998873 557899999999999999999999999986
Q ss_pred CeEEEEEEecCcccccc-----cccHHHHHHHHHHHHHHHhhh
Q psy2160 710 QRQITAETWDGKTRYKI-----QETAEEREARLKKWETFLEEE 747 (773)
Q Consensus 710 Gr~l~v~~~dgk~~~~~-----~~~~e~~~~Rl~~~~~~le~~ 747 (773)
.+...|..+.--..|.. .+-+++.-.-......||.+.
T Consensus 133 nHtf~v~~f~d~eky~s~~dew~~pe~q~fk~~~~L~~WL~d~ 175 (698)
T KOG2314|consen 133 NHTFFVRLFKDFEKYESISDEWREPEKQTFKDSSDLRSWLMDD 175 (698)
T ss_pred cceEEeehhhhHHHhcCCccccCCcccccccchHHHHHHHhCc
Confidence 78888876544333331 112333334455667777654
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.02 E-value=0.0013 Score=59.30 Aligned_cols=70 Identities=26% Similarity=0.365 Sum_probs=44.4
Q ss_pred cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCc-----eeC
Q psy2160 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR-----WFG 709 (773)
Q Consensus 635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr-----~f~ 709 (773)
.+|.|.++..+. . +++|++.|+.||.|..|.+..+. ..|+|+|.++++|..|+..+.-. .+.
T Consensus 2 ~il~~~g~~~~~--~---------re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~ 68 (105)
T PF08777_consen 2 CILKFSGLGEPT--S---------REDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEANDGKLKIK 68 (105)
T ss_dssp -EEEEEE--SS-------------HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHTTTS-B-TT
T ss_pred eEEEEecCCCCc--C---------HHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhccCCceEEc
Confidence 578888875552 2 49999999999999999887765 67889999999999999988654 556
Q ss_pred CeEEEEEE
Q psy2160 710 QRQITAET 717 (773)
Q Consensus 710 Gr~l~v~~ 717 (773)
|..+.+..
T Consensus 69 ~~~~~~~v 76 (105)
T PF08777_consen 69 GKEVTLEV 76 (105)
T ss_dssp SSSEEEE-
T ss_pred CceEEEEE
Confidence 66666655
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.98 E-value=0.0023 Score=66.69 Aligned_cols=60 Identities=27% Similarity=0.457 Sum_probs=50.2
Q ss_pred HHHHhcCCceeEEEecCCCC-----Cc--EEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccc
Q psy2160 663 REECSKCGHVKKVVLHDKHP-----EG--VAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRY 724 (773)
Q Consensus 663 ~~~f~~fG~V~~v~i~~~~~-----~G--~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~ 724 (773)
.++|.+||.|.+|.|-++.+ .+ -++|.|.+.++|.+||...+|..++||.|++.| |-|+|
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatY--GTTKY 204 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATY--GTTKY 204 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeec--CchHH
Confidence 56899999999998865321 22 259999999999999999999999999999998 55554
No 163
>KOG2193|consensus
Probab=96.95 E-value=0.00013 Score=77.79 Aligned_cols=152 Identities=18% Similarity=0.247 Sum_probs=110.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-eecCeE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-EIRGKK 294 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-~l~g~~ 294 (773)
+.+|++||.+.++.++|..+|.....-.. | -.|+ -.|||||.+.+...|.+|++.++|. .+.|.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~----g---~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr 67 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGS----G---QFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKR 67 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCC----c---ceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCce
Confidence 57899999999999999999985422111 0 1222 1579999999999999999999998 478999
Q ss_pred EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHH
Q psy2160 295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 374 (773)
Q Consensus 295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~ 374 (773)
+.|..+..+ + ..++.+.|+|++ ..+. .
T Consensus 68 ~e~~~sv~k-------------k-----------------------------qrsrk~Qirnip--pql~---------w 94 (584)
T KOG2193|consen 68 QEVEHSVPK-------------K-----------------------------QRSRKIQIRNIP--PQLQ---------W 94 (584)
T ss_pred eeccchhhH-------------H-----------------------------HHhhhhhHhcCC--HHHH---------H
Confidence 999654311 0 002336677773 2211 1
Q ss_pred HHHHHHhhccCCEEEEEeeC-CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 375 QDLREECSKCGHVKKVVLHD-KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 375 edL~e~f~k~G~V~~V~i~d-~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
+-+..+...||.|..|.... .....+.-|.|...+.+..|+..++|..+....+.+.|..
T Consensus 95 evld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 95 EVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 55677888999999885432 3334556678999999999999999999988888887653
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.83 E-value=0.0059 Score=54.26 Aligned_cols=68 Identities=13% Similarity=0.187 Sum_probs=49.0
Q ss_pred cEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEE-------------ecCCCCCcEEEEEecCHHHHHHHHH
Q psy2160 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-------------LHDKHPEGVAQIFFKEPEAADACRE 701 (773)
Q Consensus 635 ~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~-------------i~~~~~~G~afV~F~~~e~A~~Ai~ 701 (773)
+-|.|.+.|.. . ...|..+|++||.|.... ++. ....+.|+|.++.+|.+|++
T Consensus 7 ~wVtVFGfp~~-~-----------~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~ 72 (100)
T PF05172_consen 7 TWVTVFGFPPS-A-----------SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQ 72 (100)
T ss_dssp CEEEEE---GG-G-----------HHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHT
T ss_pred eEEEEEccCHH-H-----------HHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHH
Confidence 55777775432 1 278999999999998764 222 34689999999999999999
Q ss_pred HhCCceeCCeEEE-EEE
Q psy2160 702 LLNGRWFGQRQIT-AET 717 (773)
Q Consensus 702 ~lnGr~f~Gr~l~-v~~ 717 (773)
. ||+.|+|..|. |-+
T Consensus 73 ~-NG~i~~g~~mvGV~~ 88 (100)
T PF05172_consen 73 K-NGTIFSGSLMVGVKP 88 (100)
T ss_dssp T-TTEEETTCEEEEEEE
T ss_pred h-CCeEEcCcEEEEEEE
Confidence 7 99999987665 444
No 165
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.78 E-value=0.0016 Score=58.58 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=42.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc-----ee
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-----EI 290 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~-----~l 290 (773)
+-|+|.|++..++-++|+++|+.||.|.. |-+.+ |.. .|||.|.++++|..|+..+... .+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~y--------VD~~~----G~~--~g~VRf~~~~~A~~a~~~~~~~~~~~~~i 67 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAY--------VDFSR----GDT--EGYVRFKTPEAAQKALEKLKEANDGKLKI 67 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEE--------EE--T----T-S--EEEEEESS---HHHHHHHHHHTTTS-B-T
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcce--------EEecC----CCC--EEEEEECCcchHHHHHHHHHhccCCceEE
Confidence 57899999999999999999999998886 66654 332 6899999999999999876544 34
Q ss_pred cCeEEEEE
Q psy2160 291 RGKKIKVE 298 (773)
Q Consensus 291 ~g~~I~V~ 298 (773)
.+..+.++
T Consensus 68 ~~~~~~~~ 75 (105)
T PF08777_consen 68 KGKEVTLE 75 (105)
T ss_dssp TSSSEEEE
T ss_pred cCceEEEE
Confidence 55555553
No 166
>KOG2314|consensus
Probab=96.66 E-value=0.0045 Score=68.83 Aligned_cols=77 Identities=18% Similarity=0.235 Sum_probs=63.6
Q ss_pred CccEEEEcCCCCC--CCH----HHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLD--LTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~--~te----~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
-.+.|+|.|+|.- +.. .-|..+|+++|.|.. +.++.+.. |..+||.|++|.+..+|..|++.|||
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn--------~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVN--------MYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccc--------eeeccCcc-CCeeeEEEEEecChhhHHHHHHhccc
Confidence 4588999999953 222 335679999999987 77888888 77999999999999999999999999
Q ss_pred cee-cCeEEEEEe
Q psy2160 288 YEI-RGKKIKVER 299 (773)
Q Consensus 288 ~~l-~g~~I~V~~ 299 (773)
..| ..++..|..
T Consensus 128 ~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 128 KRLDKNHTFFVRL 140 (698)
T ss_pred ceecccceEEeeh
Confidence 988 467888754
No 167
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.65 E-value=0.003 Score=65.90 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=62.2
Q ss_pred CccEEEEcCCCCCCCHHHH------HHHHhhcCcccccccCCceeEEEEecCCCCCc-ceEE--EEEecChHHHHHHHHH
Q psy2160 214 ESTKVYVSNLPLDLTQEEF------VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF-KGDA--LCTYIKKESVDLALSI 284 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el------~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~-kG~A--fV~F~~~esA~~Al~~ 284 (773)
+..-|||-+||+.+-.+++ .++|.+||.|.. |.+-+...+..+ .+.+ ||+|.+.++|..||..
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~K--------IvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~ 184 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKK--------IVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAE 184 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeE--------EEecccccccccccccceEEEEecchHHHHHHHHH
Confidence 5678999999998877773 479999999976 555443311121 2334 9999999999999999
Q ss_pred cCCceecCeEEEEEeec
Q psy2160 285 LDGYEIRGKKIKVERAK 301 (773)
Q Consensus 285 lng~~l~g~~I~V~~A~ 301 (773)
.||+.+.||-|+..+..
T Consensus 185 vDgs~~DGr~lkatYGT 201 (480)
T COG5175 185 VDGSLLDGRVLKATYGT 201 (480)
T ss_pred hccccccCceEeeecCc
Confidence 99999999999997654
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.45 E-value=0.0046 Score=48.32 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL 282 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al 282 (773)
++.|-|+|.|++..+ .+..+|..||.|.. +.+... .-.++|.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~--------~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVD--------IYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEE--------EEcCCC------CcEEEEEECCHHHHHhhC
Confidence 367889999987764 45558999999987 555422 238999999999999985
No 169
>KOG0115|consensus
Probab=96.45 E-value=0.0075 Score=61.21 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=63.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec----
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR---- 576 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~---- 576 (773)
..|||.||+.-++.+.+..-|+.||.|. +..++.|.. |++.+-++|.|...-.|..|+..++..-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e--------~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~ 102 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIE--------RAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGFGGTTG 102 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccc--------hheeeeccc-ccccccchhhhhcchhHHHHHHHhccCccccCCC
Confidence 6899999999999999999999999998 455555654 889999999999999999999888543333
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
+++..|....
T Consensus 103 ~~p~~VeP~e 112 (275)
T KOG0115|consen 103 GRPVGVEPME 112 (275)
T ss_pred CCccCCChhh
Confidence 5666666544
No 170
>KOG3152|consensus
Probab=96.42 E-value=0.0021 Score=65.00 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC--------CCCcc----eEEEEeCChHHHHHH
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT--------KDFKG----DALCTYIKKESVDLA 566 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t--------g~~kG----~afV~f~~~e~A~~A 566 (773)
..-.||++|||+.+....|+++|+.||.|- +|.|.....+ |.+++ -|.|+|.+...|...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVG--------RvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVG--------RVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccc--------eEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 346899999999999999999999999997 6776655433 22333 378999999999999
Q ss_pred HHHhCCceecCe
Q psy2160 567 LSILDGYEIRGK 578 (773)
Q Consensus 567 i~~lng~~i~g~ 578 (773)
...|||..|+|+
T Consensus 145 Ae~Lnn~~Iggk 156 (278)
T KOG3152|consen 145 AELLNNTPIGGK 156 (278)
T ss_pred HHHhCCCccCCC
Confidence 999999999985
No 171
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.21 E-value=0.037 Score=52.19 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=58.0
Q ss_pred CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR 711 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr 711 (773)
++..+|+|+=+... -+++..|=..|..+|.+.|..||.|.-|.+.. +...|.|.+.++|.+|+. |+|..++|+
T Consensus 25 PpDaTVvVsv~~~~--~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 25 PPDATVVVSVDSPS--EDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp -TT-EEEEEECS-S--CCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCceEEEEecCCC--ccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 34566777655311 12334444567789999999999998887766 569999999999999887 699999999
Q ss_pred EEEEEE
Q psy2160 712 QITAET 717 (773)
Q Consensus 712 ~l~v~~ 717 (773)
.|.|..
T Consensus 98 ~l~i~L 103 (146)
T PF08952_consen 98 TLKIRL 103 (146)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 999987
No 172
>KOG3152|consensus
Probab=96.19 E-value=0.004 Score=63.10 Aligned_cols=73 Identities=22% Similarity=0.335 Sum_probs=61.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC--------CCcce----EEEEEecChHHHHHH
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT--------KDFKG----DALCTYIKKESVDLA 281 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t--------g~~kG----~AfV~F~~~esA~~A 281 (773)
..--||+++||+.+...-|+++|+.||.|-. |.|-...++ |.+++ -|.|+|.+...|...
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGR--------vylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~i 144 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGR--------VYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRI 144 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccce--------EEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHH
Confidence 4467999999999999999999999999987 777766554 33333 477999999999999
Q ss_pred HHHcCCceecCeE
Q psy2160 282 LSILDGYEIRGKK 294 (773)
Q Consensus 282 l~~lng~~l~g~~ 294 (773)
..+||+..|.|++
T Consensus 145 Ae~Lnn~~Iggkk 157 (278)
T KOG3152|consen 145 AELLNNTPIGGKK 157 (278)
T ss_pred HHHhCCCccCCCC
Confidence 9999999999965
No 173
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.02 E-value=0.019 Score=44.79 Aligned_cols=40 Identities=10% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHH
Q psy2160 659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACR 700 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai 700 (773)
.+.|+..|..||.|..+.+.... -.++|+|.+..+|.+|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 47889999999999999887433 58999999999999985
No 174
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.02 E-value=0.025 Score=50.32 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=51.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec-------CCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-------PYTKDFKGDALCTYIKKESVDLALSILD 286 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d-------~~tg~~kG~AfV~F~~~esA~~Al~~ln 286 (773)
..+.|.|=|.|+. ....|.++|++||.|.+. ..+.++ +. ........|+|.++.+|.+||+ .|
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~-------~~~~~~~~~~~~~~~-~~~~NWi~I~Y~~~~~A~rAL~-~N 74 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEH-------FEVLRSSSGINPYPI-PSGGNWIHITYDNPLSAQRALQ-KN 74 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECE-------EGGG----------E--CCTTEEEEEESSHHHHHHHHT-TT
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEe-------ecccccccccccccC-CCCCCEEEEECCCHHHHHHHHH-hC
Confidence 4577899999988 667788899999999883 101111 00 1123378999999999999998 89
Q ss_pred CceecCeEEE-EEee
Q psy2160 287 GYEIRGKKIK-VERA 300 (773)
Q Consensus 287 g~~l~g~~I~-V~~A 300 (773)
|..|.|.-|- |.+.
T Consensus 75 G~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 75 GTIFSGSLMVGVKPC 89 (100)
T ss_dssp TEEETTCEEEEEEE-
T ss_pred CeEEcCcEEEEEEEc
Confidence 9999986554 5554
No 175
>KOG4849|consensus
Probab=95.87 E-value=0.0084 Score=62.87 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=67.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc--ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~--I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
..-.+||+||-+.+|.++|.+.....|. +.+ ++++.+...|.+||||+|...+..++.+-+++|-...|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~d--------mKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFAD--------MKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhh--------hhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 5678999999999999999999988775 444 888888877999999999999999999999999999999
Q ss_pred CeEEEE
Q psy2160 292 GKKIKV 297 (773)
Q Consensus 292 g~~I~V 297 (773)
|..-.|
T Consensus 151 GQ~P~V 156 (498)
T KOG4849|consen 151 GQSPTV 156 (498)
T ss_pred CCCCee
Confidence 966555
No 176
>KOG4849|consensus
Probab=95.86 E-value=0.012 Score=61.77 Aligned_cols=81 Identities=23% Similarity=0.293 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
..++||+||-+-+|+++|.+.....|.-... .++++-++.+|+++|||+|...+..++.+.++.|-...|+|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~------dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFA------DMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHh------hhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 4689999999999999999999988864321 5888889888999999999999999999999999999999986
Q ss_pred EEEEEcc
Q psy2160 580 IKVERAK 586 (773)
Q Consensus 580 i~V~~a~ 586 (773)
-.|....
T Consensus 154 P~V~~~N 160 (498)
T KOG4849|consen 154 PTVLSYN 160 (498)
T ss_pred Ceeeccc
Confidence 6665443
No 177
>KOG0115|consensus
Probab=95.23 E-value=0.021 Score=58.05 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..|||.||+.-++-+.|.+.|+.||.|.. -.++.|.. |+..|-++|.|.+.-.|..|+..+..--|
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~--------av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIER--------AVAKVDDR-GKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccch--------heeeeccc-ccccccchhhhhcchhHHHHHHHhccCcc
Confidence 89999999999999999999999999998 67777877 99999999999999999999998754444
No 178
>KOG1855|consensus
Probab=95.22 E-value=0.021 Score=61.90 Aligned_cols=67 Identities=25% Similarity=0.320 Sum_probs=56.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec---CC--CCCc--------ceEEEEEecChHHHHH
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD---PY--TKDF--------KGDALCTYIKKESVDL 280 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d---~~--tg~~--------kG~AfV~F~~~esA~~ 280 (773)
+..+|.+-|||.+-..+-|.++|+.||.|.. |+|+.- +. .|.+ +-+|||+|...+.|.+
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~Iks--------IRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKS--------IRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceee--------eeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 8899999999999999999999999999998 888765 21 1222 4579999999999999
Q ss_pred HHHHcCCc
Q psy2160 281 ALSILDGY 288 (773)
Q Consensus 281 Al~~lng~ 288 (773)
|.++|+..
T Consensus 302 A~e~~~~e 309 (484)
T KOG1855|consen 302 ARELLNPE 309 (484)
T ss_pred HHHhhchh
Confidence 99988544
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.03 E-value=0.15 Score=48.27 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=56.4
Q ss_pred CcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeE
Q psy2160 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428 (773)
Q Consensus 349 ~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I 428 (773)
..+|+|.-+. +. .+++..+-..+..+|.+.|..||.|.-|++.. +..+|.|.+-++|.+|+. |+|..++|+.|
T Consensus 27 DaTVvVsv~~-~~-~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals-~dg~~v~g~~l 99 (146)
T PF08952_consen 27 DATVVVSVDS-PS-EDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALS-LDGIQVNGRTL 99 (146)
T ss_dssp T-EEEEEECS--S-CCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHH-GCCSEETTEEE
T ss_pred CceEEEEecC-CC-ccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHc-cCCcEECCEEE
Confidence 5567776662 11 12223333455678999999999999887764 469999999999999988 79999999999
Q ss_pred EEEec
Q psy2160 429 TAETW 433 (773)
Q Consensus 429 ~v~~~ 433 (773)
.+.+.
T Consensus 100 ~i~LK 104 (146)
T PF08952_consen 100 KIRLK 104 (146)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 99873
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.94 E-value=0.09 Score=48.93 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 660 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 660 edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
..|....+.||.|.+|.++-. --|.|.|.+..+|-+|+.++.. .-.|+.+.|+.
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred HHHHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 455666789999999998764 3699999999999999999877 44678888865
No 181
>KOG1855|consensus
Probab=94.60 E-value=0.024 Score=61.38 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=56.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEec---CC--CCCC--------cceEEEEeCChHHHH
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD---PY--TKDF--------KGDALCTYIKKESVD 564 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d---~~--tg~~--------kG~afV~f~~~e~A~ 564 (773)
.+.++|.+-|||.+-.-+.|.++|+.||.|. .|+|..- +. .|.+ +-+|+|+|...+.|.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~Ik--------sIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIK--------SIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccccee--------eeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 4678999999999999999999999999999 7888654 22 1222 457999999999999
Q ss_pred HHHHHhCCcee
Q psy2160 565 LALSILDGYEI 575 (773)
Q Consensus 565 ~Ai~~lng~~i 575 (773)
+|.+.|+...-
T Consensus 301 KA~e~~~~e~~ 311 (484)
T KOG1855|consen 301 KARELLNPEQN 311 (484)
T ss_pred HHHHhhchhhh
Confidence 99988865443
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.52 E-value=0.086 Score=44.69 Aligned_cols=56 Identities=9% Similarity=0.307 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
....||+ +|...-..+|.++|+.||.|. |..+-|- -|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4566666 999999999999999999996 8877553 599999999999999988863
No 183
>KOG2416|consensus
Probab=94.35 E-value=0.046 Score=61.45 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=62.4
Q ss_pred CCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh-cCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCc
Q psy2160 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS-KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706 (773)
Q Consensus 628 ~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~-~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr 706 (773)
+.+...+.+|+|.||..| |+. ..|+.+.. .+|.|...+|..-. --|||.|.+.++|..-+.+|||-
T Consensus 438 PsR~~~SnvlhI~nLvRP--FTl---------gQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 438 PSRKEPSNVLHIDNLVRP--FTL---------GQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCCCCccceEeeeccccc--chH---------HHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhcc
Confidence 345567899999999888 543 77888887 57788877775522 45999999999999999999998
Q ss_pred ee---CCeEEEEEE
Q psy2160 707 WF---GQRQITAET 717 (773)
Q Consensus 707 ~f---~Gr~l~v~~ 717 (773)
.. +++.|.|.|
T Consensus 505 ~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 505 QWPPSNPKHLIADF 518 (718)
T ss_pred ccCCCCCceeEeee
Confidence 76 689999988
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.34 E-value=0.098 Score=51.97 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEEec
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLN--GRWFGQRQITAETWD 719 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~ln--Gr~f~Gr~l~v~~~d 719 (773)
+++..|+++|..|+.+..+.+.+.- +.+.|.|.+.++|..|...|+ +..|.|..|.|+|..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 3468999999999999888777744 779999999999999999999 999999999999863
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.29 E-value=0.22 Score=40.03 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=45.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 570 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l 570 (773)
....|+|+|+. +++.++|+.+|..| ++. +|..+-|. -|=|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~---------~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF---------RIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCc---------eEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 35689999995 58889999999999 555 48888665 3889999999999999765
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.24 E-value=0.085 Score=44.70 Aligned_cols=60 Identities=10% Similarity=0.302 Sum_probs=44.6
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
.|....||-=..|......||.++|+.||.|. |..+-|. -|||...+.+.|..|+..++.
T Consensus 5 ~P~RdHVFhltFPkeWK~~DI~qlFspfG~I~---------VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 5 QPSRDHVFHLTFPKEWKTSDIYQLFSPFGQIY---------VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp --SGCCEEEEE--TT--HHHHHHHCCCCCCEE---------EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred CCCcceEEEEeCchHhhhhhHHHHhccCCcEE---------EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34445555445999999999999999999998 7777654 499999999999999998763
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.81 E-value=0.28 Score=39.44 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=45.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhc----CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~----G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l 285 (773)
...+|+|+|+. +++.++|..+|..| ++.. |..+-|.. |-|.|.+.+.|.+||..|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~---------IEWIdDtS-------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFR---------IEWIDDTS-------CNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCce---------EEEecCCc-------EEEEECCHHHHHHHHHcC
Confidence 45789999994 69999999999999 4433 88887765 889999999999999754
No 188
>KOG2416|consensus
Probab=92.89 E-value=0.087 Score=59.34 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
....+.|||.||-.-.|.-+|+.++.+ +|.|.. +.+|.. +..|||.|.+.++|...+.+|||...
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee----------~WmDkI----KShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE----------FWMDKI----KSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHH----------HHHHHh----hcceeEecccHHHHHHHHHHHhcccc
Confidence 456789999999888999999999995 555542 244543 77899999999999999999999886
Q ss_pred c---CeEEEEEEcc
Q psy2160 576 R---GKKIKVERAK 586 (773)
Q Consensus 576 ~---g~~i~V~~a~ 586 (773)
. ++.|.+.++.
T Consensus 507 P~sNPK~L~adf~~ 520 (718)
T KOG2416|consen 507 PPSNPKHLIADFVR 520 (718)
T ss_pred CCCCCceeEeeecc
Confidence 4 5778887765
No 189
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.11 E-value=0.22 Score=49.24 Aligned_cols=81 Identities=25% Similarity=0.161 Sum_probs=51.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh-cCcc---cccccCCceeEEEEec-CCCCC-cceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQK-CGLV---MKDVDTNQMKIKLYTD-PYTKD-FKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~-~G~I---~~~~~~~~p~i~l~~d-~~tg~-~kG~AfV~F~~~esA~~Al~~lng 287 (773)
..++|.|++||+.+|++++.+.++. +|.. .. +.-... ...+. .-.-|||.|.+.+++..-...++|
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y--------~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYY--------FQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EE--------EEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEE--------EecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 5689999999999999999987775 4444 11 221111 11111 234699999999999999999999
Q ss_pred ceecC-----eEEEEEeecc
Q psy2160 288 YEIRG-----KKIKVERAKF 302 (773)
Q Consensus 288 ~~l~g-----~~I~V~~A~~ 302 (773)
..|.+ .+-.|++|-+
T Consensus 78 ~~F~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 78 HVFVDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp EEEE-TTS-EEEEEEEE-SS
T ss_pred cEEECCCCCCcceeEEEcch
Confidence 98854 4556777764
No 190
>KOG4285|consensus
Probab=91.91 E-value=0.46 Score=49.61 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=44.5
Q ss_pred HHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy2160 660 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714 (773)
Q Consensus 660 edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~ 714 (773)
.-|..+|++||.|.+.+... .-.+..|+|.+.-+|.+||.. ||++|+|-.+.
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmi 262 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMI 262 (350)
T ss_pred hHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEE
Confidence 67889999999998876653 346899999999999999998 99999987653
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.86 E-value=0.63 Score=43.49 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCCCEEEEcCCCCCCC----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 497 AQENTKVYVSNLPLDLT----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
.++..+|.|+=|..++. -..+...++.||+|. +|.+. | +.-|.|.|.+..+|..|+.++..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~--------SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQ--------SVTLC-----G--RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcc--------eeeec-----C--CceEEEEehhhHHHHHHHHhhcC
Confidence 45678899987766653 234555567899998 56665 3 55799999999999999998887
Q ss_pred ceecCeEEEEEEcc
Q psy2160 573 YEIRGKKIKVERAK 586 (773)
Q Consensus 573 ~~i~g~~i~V~~a~ 586 (773)
...|..+.+.|-+
T Consensus 148 -~~pgtm~qCsWqq 160 (166)
T PF15023_consen 148 -RAPGTMFQCSWQQ 160 (166)
T ss_pred -CCCCceEEeeccc
Confidence 5678899998865
No 192
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.61 E-value=0.27 Score=48.70 Aligned_cols=86 Identities=24% Similarity=0.171 Sum_probs=52.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEec-CCCCC-CcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTD-PYTKD-FKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d-~~tg~-~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
...+.|.|++||+.+|++++.+.++. ++.... + ..+.-... ...+. .-.-|+|.|.+.+++..-...++|+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~-w----~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWD-W----YYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE--------EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccc-e----EEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 34679999999999999999997776 554410 0 01221111 11111 23469999999999999999999988
Q ss_pred ec---C--eEEEEEEcccc
Q psy2160 575 IR---G--KKIKVERAKFT 588 (773)
Q Consensus 575 i~---g--~~i~V~~a~~~ 588 (773)
|. | .+-.|++|-++
T Consensus 80 F~D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 80 FVDSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp EE-TTS-EEEEEEEE-SS-
T ss_pred EECCCCCCcceeEEEcchh
Confidence 86 3 35678888763
No 193
>KOG2068|consensus
Probab=86.21 E-value=0.27 Score=52.27 Aligned_cols=79 Identities=29% Similarity=0.458 Sum_probs=61.8
Q ss_pred CccEEEEcCCCCCCCHHHHH---HHHhhcCcccccccCCceeEEEEecCC----CCCcceEEEEEecChHHHHHHHHHcC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPY----TKDFKGDALCTYIKKESVDLALSILD 286 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~---~~Fs~~G~I~~~~~~~~p~i~l~~d~~----tg~~kG~AfV~F~~~esA~~Al~~ln 286 (773)
...-+||-+||...-.+.+. +.|..||.|.. |.+.++.. .|- ..-++|+|...++|..||...+
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~k--------i~~~~~~S~~s~~~~-~~s~yITy~~~eda~rci~~v~ 146 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINK--------IVKNKDPSSSSSSGG-TCSVYITYEEEEDADRCIDDVD 146 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceE--------EeecCCcccccCCCC-CCcccccccchHhhhhHHHHhh
Confidence 67889999999887555554 48999999987 77777652 122 2238999999999999999999
Q ss_pred CceecCeEEEEEeec
Q psy2160 287 GYEIRGKKIKVERAK 301 (773)
Q Consensus 287 g~~l~g~~I~V~~A~ 301 (773)
|..+.|+.++.....
T Consensus 147 g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 147 GFVDDGRALKASLGT 161 (327)
T ss_pred hHHhhhhhhHHhhCC
Confidence 999999887775544
No 194
>KOG4285|consensus
Probab=85.36 E-value=1.4 Score=46.05 Aligned_cols=51 Identities=20% Similarity=0.197 Sum_probs=42.9
Q ss_pred HHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeE
Q psy2160 375 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428 (773)
Q Consensus 375 edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I 428 (773)
.-|..+|++||.|.+.+.. ..-...+|+|.+..+|++||.. ||+.|+|..+
T Consensus 211 s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 4588999999999987755 3366899999999999999985 9999988544
No 195
>KOG2253|consensus
Probab=85.32 E-value=0.55 Score=54.09 Aligned_cols=72 Identities=21% Similarity=0.247 Sum_probs=61.3
Q ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 211 ~~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..|..-+|||+|+...+..+-+..+...||.|.. .+... ||||.|.....+..|+..+....+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s--------~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPS--------WKRDK---------FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchh--------hhhhh---------hcccchhhHHHHHHHHHHhcccCC
Confidence 3457789999999999999999999999999986 33221 899999999999999999999889
Q ss_pred cCeEEEEEe
Q psy2160 291 RGKKIKVER 299 (773)
Q Consensus 291 ~g~~I~V~~ 299 (773)
.|..+.+..
T Consensus 99 ~~~kl~~~~ 107 (668)
T KOG2253|consen 99 DDQKLIENV 107 (668)
T ss_pred Ccchhhccc
Confidence 888777643
No 196
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.25 E-value=4.5 Score=33.13 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEEE
Q psy2160 226 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297 (773)
Q Consensus 226 ~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~V 297 (773)
.++.++|+..+.+|+-.. |..|.. || ||.|.+..+|+.+....|+..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-----------I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-----------IRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-----------EEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 578899999999998643 444443 55 89999999999999999999998888765
No 197
>KOG2068|consensus
Probab=85.06 E-value=0.34 Score=51.54 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=60.2
Q ss_pred CCEEEEcCCCCCCCHHHHH---HHHHhcCcceeccCCCceEEEEEecCC--CC-CCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 500 NTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPY--TK-DFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~---~~F~~~G~I~~~~~~~~~~i~l~~d~~--tg-~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
.+-+||-+||..+-.+.+. ++|.+||.|. +|.+..++. .+ ....-++|+|...++|..||...+|.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~--------ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKIN--------KIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccce--------EEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 4678899999887666654 4788999998 677766651 11 11224899999999999999999999
Q ss_pred eecCeEEEEEEcc
Q psy2160 574 EIRGKKIKVERAK 586 (773)
Q Consensus 574 ~i~g~~i~V~~a~ 586 (773)
.+.|+.|+..++.
T Consensus 149 ~~dg~~lka~~gt 161 (327)
T KOG2068|consen 149 VDDGRALKASLGT 161 (327)
T ss_pred HhhhhhhHHhhCC
Confidence 9999887766654
No 198
>KOG4574|consensus
Probab=84.94 E-value=0.61 Score=54.96 Aligned_cols=72 Identities=29% Similarity=0.301 Sum_probs=60.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec--CeE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR--GKK 579 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~--g~~ 579 (773)
..++.|.+-..|-.-|..+|+.||.+. ++...++-+ .|.|.|.+.++|..|+..|+|..+. |-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~--------s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVA--------SAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchh--------hheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 344556666778889999999999998 688877753 7999999999999999999999875 888
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
.+|.+|+.
T Consensus 366 s~V~~ak~ 373 (1007)
T KOG4574|consen 366 SRVSFAKT 373 (1007)
T ss_pred eeEEeccc
Confidence 99998874
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.93 E-value=2.8 Score=41.69 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=44.6
Q ss_pred CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--CceecCeEEEEEEccc
Q psy2160 513 TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEIRGKKIKVERAKF 587 (773)
Q Consensus 513 t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~~i~g~~i~V~~a~~ 587 (773)
....|+++|..|+.+. .+..++. -+-..|.|.+.+.|..|...|+ +..+.|..++|.++..
T Consensus 8 ~~~~l~~l~~~~~~~~--------~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPV--------QFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS---------EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCce--------EEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4578999999999887 4555533 4568999999999999999999 9999999999999863
No 200
>KOG4574|consensus
Probab=83.73 E-value=0.89 Score=53.65 Aligned_cols=72 Identities=29% Similarity=0.301 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee--cCeE
Q psy2160 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--RGKK 294 (773)
Q Consensus 217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l--~g~~ 294 (773)
+.++.|.+-..+-.-|..+|++||.|.+ +...++-+ .|+|.|...++|.+|+..|.|.++ -|-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s--------~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~P 365 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVAS--------AWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAP 365 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhh--------heeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCc
Confidence 4456667777899999999999999998 88888776 899999999999999999999976 4788
Q ss_pred EEEEeecc
Q psy2160 295 IKVERAKF 302 (773)
Q Consensus 295 I~V~~A~~ 302 (773)
.+|.+|+.
T Consensus 366 s~V~~ak~ 373 (1007)
T KOG4574|consen 366 SRVSFAKT 373 (1007)
T ss_pred eeEEeccc
Confidence 88988874
No 201
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=83.18 E-value=4.4 Score=33.87 Aligned_cols=64 Identities=27% Similarity=0.384 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEc
Q psy2160 510 LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 585 (773)
Q Consensus 510 ~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a 585 (773)
..++..+|..++...+.|... +. -+|.|. ..|+||+-. .+.|..++..|++..+.|++|.|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~-~I--G~I~I~--------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGR-DI--GRIDIF--------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GG-GE--EEEEE---------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHH-hE--EEEEEe--------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 458889999999988766532 11 145555 347999885 45889999999999999999999876
No 202
>KOG0804|consensus
Probab=82.53 E-value=5 Score=44.47 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=66.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+.+.|+|-.+|..+|..+|..|+..+-.... .|++++|.. .++=.++|.|.+.++|..-.+.+||..|..
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~-------~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQIS-------DIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhh-------eeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34789999999999999999999997765443 699999753 245578999999999999999999999873
Q ss_pred ------eEEEEEEcccc
Q psy2160 578 ------KKIKVERAKFT 588 (773)
Q Consensus 578 ------~~i~V~~a~~~ 588 (773)
+-|.|..+.+.
T Consensus 143 le~e~Chll~V~~ve~~ 159 (493)
T KOG0804|consen 143 LEPEVCHLLYVDRVEVT 159 (493)
T ss_pred CCccceeEEEEEEEEEE
Confidence 46677766654
No 203
>KOG2591|consensus
Probab=82.23 E-value=2 Score=48.45 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=54.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh--cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ce
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQK--CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YE 574 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~--~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~ 574 (773)
..|.|.++-||..+..|+++.+|+. |-.+. +|.+..+.. -||+|.+..+|+.|...|.. ..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~i--------scefa~N~n-------WyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVI--------SCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCce--------eeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHh
Confidence 4567788999999999999999985 66666 688877653 79999999999999987754 34
Q ss_pred ecCeEEE
Q psy2160 575 IRGKKIK 581 (773)
Q Consensus 575 i~g~~i~ 581 (773)
|.|++|.
T Consensus 239 fqgKpIm 245 (684)
T KOG2591|consen 239 FQGKPIM 245 (684)
T ss_pred hcCcchh
Confidence 5666653
No 204
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=81.49 E-value=8.3 Score=35.00 Aligned_cols=68 Identities=12% Similarity=0.088 Sum_probs=49.3
Q ss_pred CEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 501 TKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 501 ~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
+.|.|--.|+. ++.+.|..+.+.+-...+ .++|++|.. .++-.+++.|.+.++|..-...+||..|..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~-------~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIE-------HIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEE-------EEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444444544 555667666666655443 688998853 357789999999999999999999998873
No 205
>KOG2253|consensus
Probab=79.26 E-value=1.2 Score=51.36 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..+..+|||+|+-..+..+-++.+...||.|. +++.. -|||+.|..+..+..|+..|+-..++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~--------s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVP--------SWKRD---------KFGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcch--------hhhhh---------hhcccchhhHHHHHHHHHHhcccCCC
Confidence 34668999999999999999999999999997 34332 18999999999999999999999999
Q ss_pred CeEEEEEEc
Q psy2160 577 GKKIKVERA 585 (773)
Q Consensus 577 g~~i~V~~a 585 (773)
|..+.+..-
T Consensus 100 ~~kl~~~~d 108 (668)
T KOG2253|consen 100 DQKLIENVD 108 (668)
T ss_pred cchhhccch
Confidence 988776653
No 206
>KOG2135|consensus
Probab=78.80 E-value=1.3 Score=49.07 Aligned_cols=74 Identities=15% Similarity=0.189 Sum_probs=60.0
Q ss_pred CCCEEEEcCCCCCC-CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLPLDL-TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~~-t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.++.|-+.-.|+.. |..+|..+|.+||.|. .|.+-.. .-.|.|+|.+..+|-.|. ..++..|.|
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~--------n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnn 435 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIE--------NIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNN 435 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccc--------cccccCc------hhhheeeeeccccccchh-ccccceecC
Confidence 34555566666664 5789999999999998 6887554 336999999999998887 689999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.|-..
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 9999999875
No 207
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=78.10 E-value=28 Score=31.61 Aligned_cols=70 Identities=11% Similarity=0.086 Sum_probs=49.6
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.++.|.|=..|+. ++.++|..+.+.+-...+- ++|++|.. .++-.+++.|.+.++|..-...+||..|..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~-------~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEH-------IRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEE-------EEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 4455555555555 4556666666655443332 88888753 356679999999999999999999999864
No 208
>KOG0804|consensus
Probab=76.69 E-value=12 Score=41.67 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
.++.|.|=.+|..+|.-||..|+..|-....+ |+++||.. -++-.++|.|.+.++|....+.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~-------irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISD-------IRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhhe-------eEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 47999999999999999999999866444443 99999653 234469999999999999999999999864
Q ss_pred -----eEEEEEeecc
Q psy2160 293 -----KKIKVERAKF 302 (773)
Q Consensus 293 -----~~I~V~~A~~ 302 (773)
+-|.|....+
T Consensus 144 e~e~Chll~V~~ve~ 158 (493)
T KOG0804|consen 144 EPEVCHLLYVDRVEV 158 (493)
T ss_pred CccceeEEEEEEEEE
Confidence 5555654444
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.48 E-value=14 Score=30.27 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160 511 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 582 (773)
Q Consensus 511 ~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V 582 (773)
.++-++|+..+..|+-.. |..|. || =||.|.+..+|.++....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-----------I~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-----------IRDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-----------EEecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999999875 44454 23 589999999999999999999999888765
No 210
>KOG2135|consensus
Probab=74.26 E-value=2.1 Score=47.58 Aligned_cols=74 Identities=15% Similarity=0.192 Sum_probs=60.9
Q ss_pred CccEEEEcCCCCCC-CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDL-TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~-te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
+++.+-+.-.|+.. |..+|..+|.+||.|.. |.+-... -.|.|+|.+..+|-.|.. ..+..|.+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n--------~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnn 435 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIEN--------IQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNN 435 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCcccc--------ccccCch------hhheeeeeccccccchhc-cccceecC
Confidence 67777777777775 66889999999999997 7764332 369999999999988886 88999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
+.|+|.+-+.
T Consensus 436 r~iKl~whnp 445 (526)
T KOG2135|consen 436 RFIKLFWHNP 445 (526)
T ss_pred ceeEEEEecC
Confidence 9999988664
No 211
>KOG2591|consensus
Probab=71.04 E-value=7.2 Score=44.27 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=54.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh--cCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--e
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQK--CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--E 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~--~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~ 289 (773)
+.|.|.++-||..+-+++|+.+|+. |-.+.+ |.+-.+.. =||+|.+..+|+.|.+.|... .
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~is--------cefa~N~n-------WyITfesd~DAQqAykylreevk~ 238 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVIS--------CEFAHNDN-------WYITFESDTDAQQAYKYLREEVKT 238 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCcee--------eeeeecCc-------eEEEeecchhHHHHHHHHHHHHHh
Confidence 6789999999999999999999984 666665 56654433 589999999999999877543 4
Q ss_pred ecCeEEEE
Q psy2160 290 IRGKKIKV 297 (773)
Q Consensus 290 l~g~~I~V 297 (773)
|.|++|..
T Consensus 239 fqgKpImA 246 (684)
T KOG2591|consen 239 FQGKPIMA 246 (684)
T ss_pred hcCcchhh
Confidence 66766543
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=64.83 E-value=27 Score=29.12 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=25.6
Q ss_pred ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEE
Q psy2160 671 HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAET 717 (773)
Q Consensus 671 ~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~ 717 (773)
.|-+|.|.+. +.||.-.. +.|..++..|++..+.|++|.|+.
T Consensus 32 ~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 32 DIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred hEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 5678888884 47777544 368889999999999999999875
No 213
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=60.41 E-value=6.1 Score=33.07 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=10.9
Q ss_pred CCCcEEEEecCCCccc
Q psy2160 632 KNESVIIVKNLFDPAL 647 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~ 647 (773)
..++||+|+|||+|.+
T Consensus 52 ~aS~C~lLkNMFDP~~ 67 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAE 67 (73)
T ss_dssp ---SEEEEESSS-TTC
T ss_pred CCCceeeeecCCCccc
Confidence 5689999999999954
No 214
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=58.20 E-value=5.2 Score=29.91 Aligned_cols=18 Identities=17% Similarity=0.516 Sum_probs=16.2
Q ss_pred CCCceeeecCccCccccC
Q psy2160 52 KTGTKYKWDTASNSWVPS 69 (773)
Q Consensus 52 ~~~~~~~w~~~~~~w~~~ 69 (773)
.+..+|+|++|..+|+|+
T Consensus 28 i~~~tlvw~~g~~~W~pl 45 (45)
T PF14237_consen 28 IDPDTLVWKEGMSDWKPL 45 (45)
T ss_pred CCCCCeEeCCChhhceEC
Confidence 667899999999999985
No 215
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=58.00 E-value=4.4 Score=27.66 Aligned_cols=16 Identities=38% Similarity=0.605 Sum_probs=13.8
Q ss_pred eCCeEEEeCCCCCeeE
Q psy2160 9 EGDVAVYTDPQSRQQY 24 (773)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (773)
-|-.|.|+||.|+..|
T Consensus 6 TglpA~Y~DP~T~l~Y 21 (30)
T PF08265_consen 6 TGLPARYRDPKTGLPY 21 (30)
T ss_pred cCCCccccCCCCCCcc
Confidence 4677999999999876
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.58 E-value=21 Score=33.82 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=67.1
Q ss_pred HHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHH
Q psy2160 373 YQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 452 (773)
Q Consensus 373 i~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~ 452 (773)
+...+.......|.+.-..+ ..+...++|.+.+++.+++. .....|+|..+.+..|.+......
T Consensus 34 l~~~l~~~W~~~~~~~i~~l----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~----------- 97 (153)
T PF14111_consen 34 LEQELAKIWKLKGGVKIRDL----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE----------- 97 (153)
T ss_pred HHHHHHHHhCCCCcEEEEEe----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-----------
Confidence 44566666555565543333 36889999999999999977 355567788888876653321000
Q ss_pred HHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcce
Q psy2160 453 KKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVM 528 (773)
Q Consensus 453 ~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~ 528 (773)
..-.....-|.|.|||.. .+++-|+.+-+.+|.+.
T Consensus 98 -----------------------------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 98 -----------------------------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred -----------------------------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 000123467888999998 67888999999999986
No 217
>KOG2318|consensus
Probab=56.57 E-value=31 Score=39.72 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=63.5
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhc----CcceeccCCCceEEEEEecCC----------CCC-------------
Q psy2160 497 AQENTKVYVSNLPLD-LTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPY----------TKD------------- 548 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~----G~I~~~~~~~~~~i~l~~d~~----------tg~------------- 548 (773)
....++|-|-||.++ +..++|.-+|+.| |.|. +|.||...- .|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsil--------SV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~ 242 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSIL--------SVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKE 242 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCcee--------EEEechhhhhHHHhhhhcccCChhhhccccccCcc
Confidence 346789999999988 7889999999976 4677 788886531 121
Q ss_pred -----------------------Cc-ceEEEEeCChHHHHHHHHHhCCceec--CeEEEEEEcc
Q psy2160 549 -----------------------FK-GDALCTYIKKESVDLALSILDGYEIR--GKKIKVERAK 586 (773)
Q Consensus 549 -----------------------~k-G~afV~f~~~e~A~~Ai~~lng~~i~--g~~i~V~~a~ 586 (773)
.+ -||.|+|.+.+.|......++|..|. |..|-+.+..
T Consensus 243 s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 243 SESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred cccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 11 26999999999999999999999998 5566666554
No 218
>KOG4019|consensus
Probab=53.10 E-value=15 Score=35.96 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe-EEEEEEecC
Q psy2160 659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR-QITAETWDG 720 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr-~l~v~~~dg 720 (773)
+.....+|.+|-...-..+.+. -+.+.|-|.+++.|..|...++++-|.|. .+.++|.+.
T Consensus 29 k~~~~~lFrq~n~~~~fq~lrs--frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 29 KALFENLFRQINEDATFQLLRS--FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHHHhHHhhhCcchHHHHHHh--hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 4566667776666555555553 36788999999999999999999999988 888877554
No 219
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=45.97 E-value=15 Score=33.73 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=28.3
Q ss_pred CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC-CCCCcEEEEEecCHHHH
Q psy2160 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD-KHPEGVAQIFFKEPEAA 696 (773)
Q Consensus 634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~-~~~~G~afV~F~~~e~A 696 (773)
+.+++|.|+++... ++-...-.=-+.|++.|+.|..+.-..++. ..+.|++.|.|..--+.
T Consensus 8 PwmgIi~N~~~~~~--~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 8 PWMGIIVNIPTEKD--DDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp S-EEEEE----EE---TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CCEEEEEcCccccC--CCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHH
Confidence 36899999976531 111000111257777777788776444443 34579999999986555
No 220
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.66 E-value=66 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHH
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQ 522 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~ 522 (773)
..+.++|.|+|||....+++|++...
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34678999999999999999988654
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=38.22 E-value=30 Score=31.70 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=30.3
Q ss_pred EEEEcCCCCC---------CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHH
Q psy2160 502 KVYVSNLPLD---------LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563 (773)
Q Consensus 502 ~l~V~nLp~~---------~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A 563 (773)
++.|-|+|.. .+.++|.+.|+.|..+. ++...+.. .+.|+++|.|.+--+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k---------v~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK---------VKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE---------EEEEEETT--EEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce---------eEECcCCC--CCcEEEEEEECCChHH
Confidence 5666777543 45689999999999986 77767764 3789999999876544
No 222
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=37.26 E-value=97 Score=27.24 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=37.8
Q ss_pred cchhhHHHHHHHHHHHHhcCCcee-----EEEecCC--CCCcEEEEEecCHHHHHHHHH
Q psy2160 650 KDVTLILEYQQDLREECSKCGHVK-----KVVLHDK--HPEGVAQIFFKEPEAADACRE 701 (773)
Q Consensus 650 ~d~~~~~~l~edl~~~f~~fG~V~-----~v~i~~~--~~~G~afV~F~~~e~A~~Ai~ 701 (773)
.|+..+.+....+...|++||.=- +|....+ .+.-.+.|+|.+.+.|..|-.
T Consensus 13 ~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 13 RDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred cCHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccEEEEEcCCHHHHHHHhc
Confidence 367889999999999999999421 1222222 335679999999999987753
No 223
>KOG4410|consensus
Probab=35.55 E-value=49 Score=34.68 Aligned_cols=50 Identities=12% Similarity=0.211 Sum_probs=38.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChH
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~e 276 (773)
-.+-|||+|||.++...+|...+.+-|-+- ..|... | ..|-||+.|-+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p---------m~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP---------MSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc---------eeEeee---c-CCcceeEecCCcc
Confidence 668899999999999999999998877654 344432 2 3567999998743
No 224
>KOG2318|consensus
Probab=35.19 E-value=99 Score=35.81 Aligned_cols=78 Identities=17% Similarity=0.315 Sum_probs=61.0
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhc----CcccccccCCceeEEEEecCC----------CCC---------------
Q psy2160 214 ESTKVYVSNLPLD-LTQEEFVEVMQKC----GLVMKDVDTNQMKIKLYTDPY----------TKD--------------- 263 (773)
Q Consensus 214 ~~~~VyV~nLP~~-~te~el~~~Fs~~----G~I~~~~~~~~p~i~l~~d~~----------tg~--------------- 263 (773)
...+|-|-||.++ +...+|.-+|+.| |.|.+ |.||.... +|.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilS--------V~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~ 244 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILS--------VKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESE 244 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeE--------EEechhhhhHHHhhhhcccCChhhhccccccCcccc
Confidence 6689999999987 7889999999966 57877 88887533 121
Q ss_pred ---------------------c-ceEEEEEecChHHHHHHHHHcCCceecC--eEEEEEe
Q psy2160 264 ---------------------F-KGDALCTYIKKESVDLALSILDGYEIRG--KKIKVER 299 (773)
Q Consensus 264 ---------------------~-kG~AfV~F~~~esA~~Al~~lng~~l~g--~~I~V~~ 299 (773)
. .-||.|+|.+.+.|......++|..|.. ..|-+.+
T Consensus 245 sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 245 SDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred cchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 1379999999999999999999999964 4555544
No 225
>KOG2891|consensus
Probab=35.15 E-value=13 Score=38.45 Aligned_cols=71 Identities=10% Similarity=0.304 Sum_probs=45.5
Q ss_pred CCCCCEEEEcCCCCC------------CCHHHHHHHHHhcCcceeccCCCceEEEEEe-----cCCCCCCc-----ce--
Q psy2160 497 AQENTKVYVSNLPLD------------LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT-----DPYTKDFK-----GD-- 552 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~------------~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~-----d~~tg~~k-----G~-- 552 (773)
...+.+||+.+||-. -+++-|+..|..||.|. .|.|+. ..-+|+.. ||
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir--------~vdipicdplr~~mn~kisgiq~~gfg~ 217 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIR--------NVDIPICDPLREEMNGKISGIQFHGFGF 217 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccce--------ecCCcccchhHHHhcCccccceeecccc
Confidence 345578888888743 36788999999999998 444432 22234433 33
Q ss_pred -------EEEEeCChHHHHHHHHHhCCcee
Q psy2160 553 -------ALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 553 -------afV~f~~~e~A~~Ai~~lng~~i 575 (773)
|+|+|...-.-..|+..|.|..+
T Consensus 218 g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 218 GGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred CcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 34555555566677777777654
No 226
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=35.01 E-value=2.3e+02 Score=22.49 Aligned_cols=46 Identities=17% Similarity=0.363 Sum_probs=32.2
Q ss_pred HHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCc
Q psy2160 660 QDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706 (773)
Q Consensus 660 edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr 706 (773)
.+|.+.|.+.| .|.++.+......++..+.+.+.+.|.+++.. +|.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH-CCC
Confidence 67778888877 78888766544457777778777777777665 443
No 227
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=33.34 E-value=1.6e+02 Score=25.67 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCC
Q psy2160 659 QQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNG 705 (773)
Q Consensus 659 ~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnG 705 (773)
.+.++++++++| .|.++....+.-+.++.+.+.+.+.|.++...+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 467777887776 88888877788889999999999999888766543
No 228
>PF12930 DUF3836: Family of unknown function (DUF3836); InterPro: IPR024339 This entry represents a family of bacterial proteins of unknown function.; PDB: 3MSW_A.
Probab=32.94 E-value=36 Score=31.96 Aligned_cols=42 Identities=29% Similarity=0.621 Sum_probs=22.1
Q ss_pred CCeeEEEecccCceeecccccccCCCcceecC--CCCceeeecCccCccc
Q psy2160 20 SRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKD--KTGTKYKWDTASNSWV 67 (773)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~w~~~~~~w~ 67 (773)
.+..|+||..++.|+|.-- -.|.|.+ -+=+=++|+...+.|.
T Consensus 76 eK~a~kWn~~k~~W~~~~~------~~y~Y~~~~~~~~Y~~WN~kk~~y~ 119 (132)
T PF12930_consen 76 EKEAYKWNSNKNGWENYYK------LNYSYNGNEVTIEYAKWNKKKNAYS 119 (132)
T ss_dssp EEEEEEEETTTTEEEEEEE------EEEEEETTEEEEEEEEE-TTTSSEE
T ss_pred eeeeeeecccccceeeeEE------EEEEeCCcEEEEEEeeccCccCccc
Confidence 4566777777777777540 2233333 1113346776666664
No 229
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=31.17 E-value=1.1e+02 Score=26.52 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=22.0
Q ss_pred EEEEeCChHHHHHHHHHhCCce--ecCeEEEEEEc
Q psy2160 553 ALCTYIKKESVDLALSILDGYE--IRGKKIKVERA 585 (773)
Q Consensus 553 afV~f~~~e~A~~Ai~~lng~~--i~g~~i~V~~a 585 (773)
|+|+|..+.-|+.-++ +..+. +.+..+.|...
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEE
Confidence 7899999999999885 43333 34566555543
No 230
>KOG4483|consensus
Probab=30.64 E-value=96 Score=34.19 Aligned_cols=56 Identities=18% Similarity=0.272 Sum_probs=46.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHH
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI 284 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ 284 (773)
..-|=|-+.|...-.++|..+|+.||.---+ |+.+-|. .||-.|.+...|..||.+
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfd-------IkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFD-------IKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCce-------eEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3567788999999899999999999876543 7776554 599999999999999984
No 231
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=29.38 E-value=1e+02 Score=24.87 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhcCCceeEEEecC
Q psy2160 656 LEYQQDLREECSKCGHVKKVVLHD 679 (773)
Q Consensus 656 ~~l~edl~~~f~~fG~V~~v~i~~ 679 (773)
++|..+||+.|+..|.|.-+.+-.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 467799999999999998665543
No 232
>KOG4483|consensus
Probab=27.80 E-value=1.3e+02 Score=33.26 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=48.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHH
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSI 569 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ 569 (773)
.-...|-|.++|...-.++|..+|+.||.--. +|+.+-|. .||-.|.+...|..|+.+
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgf-------dIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGF-------DIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCc-------eeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34578999999999999999999999987653 46666443 699999999999999954
No 233
>KOG4019|consensus
Probab=27.43 E-value=57 Score=32.12 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCCCCC-----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 499 ENTKVYVSNLPLDLT-----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t-----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
-.+++.+.+++..+- ......+|..|.... -.++++ +.+...|.|.+++.|..|.-.+++.
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~--------~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~ 74 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDA--------TFQLLR------SFRRVRINFSNPEAAADARIKLHST 74 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcch--------HHHHHH------hhceeEEeccChhHHHHHHHHhhhc
Confidence 456788888877642 233445566555443 233332 3567789999999999999999999
Q ss_pred eecCe-EEEEEEccccccC
Q psy2160 574 EIRGK-KIKVERAKFTMKG 591 (773)
Q Consensus 574 ~i~g~-~i~V~~a~~~~~~ 591 (773)
.|.|. .+..-+|+..+.+
T Consensus 75 ~f~~~~~~k~yfaQ~~~~~ 93 (193)
T KOG4019|consen 75 SFNGKNELKLYFAQPGHPE 93 (193)
T ss_pred ccCCCceEEEEEccCCCcc
Confidence 99988 8888888865443
No 234
>KOG4410|consensus
Probab=27.29 E-value=83 Score=33.06 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=38.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChH
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e 561 (773)
..+-|||+|||.++...+|+..+.+-|.+- ..|--. | +.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p---------m~iswk---g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP---------MSISWK---G-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc---------eeEeee---c-CCcceeEecCCcc
Confidence 456799999999999999999999888765 333222 2 5788999997754
No 235
>KOG2295|consensus
Probab=25.59 E-value=11 Score=42.83 Aligned_cols=73 Identities=16% Similarity=0.223 Sum_probs=55.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|+|+|++++++..+|..+++.+-.++. +-+..+..-.++..+.+|+|..--...-|+..||+..++..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lr--------fals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLR--------FALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchhee--------eeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 5588999999999999999999998876665 44433322245567889999988888888888888877643
Q ss_pred E
Q psy2160 294 K 294 (773)
Q Consensus 294 ~ 294 (773)
.
T Consensus 302 ~ 302 (648)
T KOG2295|consen 302 F 302 (648)
T ss_pred c
Confidence 3
No 236
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=25.04 E-value=1.8e+02 Score=28.03 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCC
Q psy2160 652 VTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNG 705 (773)
Q Consensus 652 ~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnG 705 (773)
+.-+..|+..|..+|..-. ..+......+.+.+.|+|..+-+|...++.|--
T Consensus 16 ~~~ld~i~~~l~~L~~~~~--~~l~~~~~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 16 QYKLDDIKNWLASLYKPRI--SDLKVRKVEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred HHHHHHHHHHHHHHHhccc--ccceeeccccCceEEEEEechHHHHHHHHHHhh
Confidence 4457788888999887633 334444455668999999999999999998854
No 237
>KOG2295|consensus
Probab=24.85 E-value=13 Score=42.46 Aligned_cols=72 Identities=17% Similarity=0.244 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|+|+|++++++-.+|..+++.+-.+. ++.+-....-.....++.|+|..--...-|+.+||+..+.-.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~l--------rfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFL--------RFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchhe--------eeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 358899999999999999999999887765 344433322233456789999988888888888888877643
No 238
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.01 E-value=96 Score=32.95 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=102.6
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-------CCCCcceEEEEeCChHHHHHH--
Q psy2160 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-------TKDFKGDALCTYIKKESVDLA-- 566 (773)
Q Consensus 496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-------tg~~kG~afV~f~~~e~A~~A-- 566 (773)
..-..+.|...|+..+++-..+...|-+||+|+ +|.|+.+.. .........+.|.+.+.+..-
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIE--------SiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIE--------SIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCcee--------EEEEecCCCcccccccccccceEEEEeeechHHHHHHHH
Confidence 344568899999999999999999999999999 899987751 122346789999998877543
Q ss_pred --HHHhCC--ceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecC
Q psy2160 567 --LSILDG--YEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNL 642 (773)
Q Consensus 567 --i~~lng--~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl 642 (773)
++.|.. ..+.-..|.|.+................. ....+ ....+ +.-.....+|.|.|.=-
T Consensus 83 nvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~--~~~~~--~~~L~----------~~i~~~gATRSl~IeF~ 148 (309)
T PF10567_consen 83 NVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEAD--FSDYL--VASLQ----------YNIINRGATRSLAIEFK 148 (309)
T ss_pred HHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccc--hhhHH--hhhhh----------heeecCCcceEEEEEec
Confidence 344443 23556778888776532221100000000 00000 00000 00112334677777532
Q ss_pred CCccccccchhhHHHHHHHHHHHHhcCC----ceeEEEecC------CCCCcEEEEEecCHHHHHHHHHHhC
Q psy2160 643 FDPALFDKDVTLILEYQQDLREECSKCG----HVKKVVLHD------KHPEGVAQIFFKEPEAADACRELLN 704 (773)
Q Consensus 643 ~~~~~~~~d~~~~~~l~edl~~~f~~fG----~V~~v~i~~------~~~~G~afV~F~~~e~A~~Ai~~ln 704 (773)
.+ +..+. -+.+.| .....-+ .|++|.|.. .-|.-+|.+.|-+.--|...+.-|.
T Consensus 149 -~~--~~~~d----l~~~kL-~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 149 -DP--VDKDD----LIEKKL-PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred -Cc--cchhH----HHHHhh-hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 22 21111 112223 2222223 356676653 3456799999999999988887775
No 239
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=21.71 E-value=77 Score=26.05 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=23.1
Q ss_pred CCccccCCCceeEEcCCCCcEEEEe
Q psy2160 106 KGSYGYEGDTHTYTDSTDGTVYIWD 130 (773)
Q Consensus 106 ~~~~~~~~~~~~~~~~~dg~~~~~d 130 (773)
.+.|.+.++.|+.++...+..|.||
T Consensus 30 ~V~y~~~t~~F~l~~~~~~~~f~FD 54 (67)
T PF08796_consen 30 TVTYDQETETFELEEYRQKQKFQFD 54 (67)
T ss_dssp EEEEETTTTEEEEEEEETTCEEEES
T ss_pred EEEEECCCCeEEEEEecCCCEeecc
Confidence 4678999999999999999999999
No 240
>COG5195 Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=50 Score=29.14 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=17.6
Q ss_pred CcceEEeCCeEEEeCCCCCeeEE
Q psy2160 3 SKYVHYEGDVAVYTDPQSRQQYT 25 (773)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~ 25 (773)
|+|-.--|=-|+||+|.|+..|-
T Consensus 66 ~KyCDvTGL~a~Yt~P~t~lrYh 88 (118)
T COG5195 66 MKYCDVTGLPAPYTCPNTGLRYH 88 (118)
T ss_pred cccccccCCcccccCCCcCceec
Confidence 45555567779999999999884
Done!