Query psy2160
Match_columns 773
No_of_seqs 583 out of 2898
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 17:52:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1E-36 3.4E-41 324.1 30.3 238 214-587 21-263 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 8.2E-37 2.8E-41 326.1 27.5 245 214-587 40-290 (292)
3 3smz_A Protein raver-1, ribonu 100.0 3.1E-35 1.1E-39 312.6 31.7 243 348-723 21-266 (284)
4 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-34 1.1E-38 305.9 29.5 246 346-721 38-291 (292)
5 4f02_A Polyadenylate-binding p 100.0 1E-27 3.4E-32 244.0 17.9 166 498-720 13-180 (213)
6 1b7f_A Protein (SXL-lethal pro 99.9 5.9E-27 2E-31 228.0 19.4 165 214-585 2-168 (168)
7 1fxl_A Paraneoplastic encephal 99.9 1.6E-26 5.3E-31 224.4 20.9 164 215-585 2-167 (167)
8 3md3_A Nuclear and cytoplasmic 99.9 2E-26 6.7E-31 223.5 19.8 161 501-719 1-165 (166)
9 1b7f_A Protein (SXL-lethal pro 99.9 1.4E-26 4.9E-31 225.3 18.9 160 499-717 2-167 (168)
10 1fxl_A Paraneoplastic encephal 99.9 2.9E-26 9.8E-31 222.6 19.5 159 500-717 2-166 (167)
11 4f02_A Polyadenylate-binding p 99.9 2.4E-26 8.1E-31 233.8 18.9 165 214-435 14-180 (213)
12 2qfj_A FBP-interacting repress 99.9 2.8E-26 9.7E-31 232.8 18.9 178 214-587 27-204 (216)
13 2qfj_A FBP-interacting repress 99.9 7.6E-26 2.6E-30 229.6 20.0 176 499-722 27-206 (216)
14 1l3k_A Heterogeneous nuclear r 99.9 8.3E-26 2.9E-30 225.7 19.1 173 497-724 10-186 (196)
15 3nmr_A Cugbp ELAV-like family 99.9 1.3E-25 4.4E-30 219.8 17.6 163 499-719 2-175 (175)
16 3md3_A Nuclear and cytoplasmic 99.9 3E-25 1E-29 215.1 19.9 161 216-434 1-165 (166)
17 2cjk_A Nuclear polyadenylated 99.9 7E-26 2.4E-30 220.3 14.4 160 500-721 3-166 (167)
18 1fje_B Nucleolin RBD12, protei 99.9 7.8E-26 2.7E-30 222.0 14.1 165 497-721 10-174 (175)
19 1l3k_A Heterogeneous nuclear r 99.9 1.5E-24 5.2E-29 216.6 20.1 169 214-437 12-184 (196)
20 3nmr_A Cugbp ELAV-like family 99.9 3.6E-24 1.2E-28 209.5 19.6 163 214-434 2-175 (175)
21 3pgw_A U1-A; protein-RNA compl 99.9 6.1E-24 2.1E-28 225.2 22.3 199 497-718 6-280 (282)
22 3tyt_A Heterogeneous nuclear r 99.9 6.4E-24 2.2E-28 214.4 19.2 181 499-711 3-193 (205)
23 2cjk_A Nuclear polyadenylated 99.9 1.4E-24 4.7E-29 211.1 13.8 161 214-436 2-166 (167)
24 2g4b_A Splicing factor U2AF 65 99.9 6.1E-24 2.1E-28 207.6 17.6 154 499-718 3-171 (172)
25 1fje_B Nucleolin RBD12, protei 99.9 2.4E-24 8.4E-29 211.3 14.8 163 214-436 12-174 (175)
26 2yh0_A Splicing factor U2AF 65 99.9 1.8E-23 6E-28 209.1 20.6 186 499-722 3-195 (198)
27 2adc_A Polypyrimidine tract-bi 99.9 1.3E-23 4.5E-28 216.0 19.5 192 497-720 31-227 (229)
28 2g4b_A Splicing factor U2AF 65 99.9 2.3E-23 7.9E-28 203.5 19.3 159 348-586 3-172 (172)
29 1qm9_A Polypyrimidine tract-bi 99.9 5.6E-24 1.9E-28 213.3 14.7 190 499-720 2-196 (198)
30 3pgw_A U1-A; protein-RNA compl 99.9 2.1E-22 7.2E-27 213.3 21.7 197 214-433 8-280 (282)
31 2yh0_A Splicing factor U2AF 65 99.9 1.7E-22 5.7E-27 202.0 19.3 180 348-587 3-193 (198)
32 3tyt_A Heterogeneous nuclear r 99.9 1.8E-22 6.1E-27 203.8 19.2 196 348-585 3-204 (205)
33 3sde_A Paraspeckle component 1 99.9 9.6E-23 3.3E-27 213.8 17.8 154 498-722 20-180 (261)
34 2adc_A Polypyrimidine tract-bi 99.9 4.6E-22 1.6E-26 204.4 19.1 188 214-434 33-226 (229)
35 1qm9_A Polypyrimidine tract-bi 99.9 2.3E-22 7.9E-27 201.5 15.5 189 214-434 2-195 (198)
36 3sde_A Paraspeckle component 1 99.9 2.2E-21 7.6E-26 203.4 19.5 157 346-588 19-179 (261)
37 4fxv_A ELAV-like protein 1; RN 99.8 2.6E-18 8.8E-23 152.5 11.1 81 214-302 18-98 (99)
38 2kn4_A Immunoglobulin G-bindin 99.8 4.2E-18 1.4E-22 164.4 13.6 146 390-588 5-150 (158)
39 3s6e_A RNA-binding protein 39; 99.7 6.6E-18 2.3E-22 153.3 11.5 88 632-720 5-92 (114)
40 3v4m_A Splicing factor U2AF 65 99.7 1.8E-17 6.1E-22 148.5 12.5 89 632-721 3-97 (105)
41 4fxv_A ELAV-like protein 1; RN 99.7 1.3E-17 4.4E-22 148.0 11.3 80 499-586 18-97 (99)
42 4f25_A Polyadenylate-binding p 99.7 2.9E-17 9.9E-22 149.9 10.4 79 214-302 4-82 (115)
43 2dit_A HIV TAT specific factor 99.7 5.1E-17 1.7E-21 147.5 11.6 98 631-728 12-109 (112)
44 2la6_A RNA-binding protein FUS 99.7 5.7E-17 1.9E-21 143.6 11.6 88 214-301 12-99 (99)
45 2lxi_A RNA-binding protein 10; 99.7 2E-17 6.9E-22 144.3 7.8 81 215-303 1-83 (91)
46 3s8s_A Histone-lysine N-methyl 99.7 8.3E-17 2.8E-21 145.6 11.1 81 213-301 4-84 (110)
47 4f25_A Polyadenylate-binding p 99.7 6.7E-17 2.3E-21 147.4 10.4 79 499-587 4-82 (115)
48 2i2y_A Fusion protein consists 99.7 1.3E-16 4.5E-21 152.6 11.9 138 394-587 9-147 (150)
49 2lkz_A RNA-binding protein 5; 99.7 6.2E-17 2.1E-21 142.3 8.1 80 214-301 8-93 (95)
50 2lxi_A RNA-binding protein 10; 99.7 6.5E-17 2.2E-21 141.1 8.0 81 500-588 1-83 (91)
51 3s8s_A Histone-lysine N-methyl 99.7 2E-16 6.8E-21 143.1 11.1 81 498-586 4-84 (110)
52 2cpe_A RNA-binding protein EWS 99.7 4E-16 1.4E-20 141.6 12.5 90 214-303 14-103 (113)
53 2kn4_A Immunoglobulin G-bindin 99.7 6.6E-16 2.3E-20 148.9 14.2 145 537-721 2-150 (158)
54 2lkz_A RNA-binding protein 5; 99.7 1.4E-16 4.7E-21 140.0 8.5 83 498-586 7-93 (95)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.7E-16 9.1E-21 134.9 9.8 81 213-301 5-85 (85)
56 3md1_A Nuclear and cytoplasmic 99.7 4.4E-16 1.5E-20 132.9 10.9 79 216-302 2-80 (83)
57 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.7E-16 1.6E-20 134.0 10.9 81 214-302 5-85 (87)
58 2i2y_A Fusion protein consists 99.6 7.4E-16 2.5E-20 147.3 13.1 145 538-721 3-148 (150)
59 3ue2_A Poly(U)-binding-splicin 99.6 3.6E-16 1.2E-20 142.8 9.9 82 633-720 19-108 (118)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.6 5.2E-16 1.8E-20 133.1 9.9 81 498-586 5-85 (85)
61 3p5t_L Cleavage and polyadenyl 99.6 1.9E-16 6.4E-21 137.8 7.1 79 216-302 2-82 (90)
62 2la6_A RNA-binding protein FUS 99.6 5.2E-16 1.8E-20 137.4 10.1 90 497-586 10-99 (99)
63 1whw_A Hypothetical protein ri 99.6 7.8E-16 2.7E-20 136.2 10.9 82 214-303 7-88 (99)
64 3bs9_A Nucleolysin TIA-1 isofo 99.6 8.5E-16 2.9E-20 132.4 10.7 81 498-586 4-84 (87)
65 3ns6_A Eukaryotic translation 99.6 1.6E-16 5.4E-21 141.2 6.0 80 214-301 5-91 (100)
66 3md1_A Nuclear and cytoplasmic 99.6 1E-15 3.6E-20 130.6 10.8 79 501-587 2-80 (83)
67 2cqc_A Arginine/serine-rich sp 99.6 1.4E-15 4.7E-20 133.4 11.7 80 214-301 14-93 (95)
68 2dnz_A Probable RNA-binding pr 99.6 8E-16 2.7E-20 134.9 10.2 82 214-303 4-85 (95)
69 2e5h_A Zinc finger CCHC-type a 99.6 5.8E-16 2E-20 135.6 9.2 80 214-301 15-94 (94)
70 2x1f_A MRNA 3'-END-processing 99.6 8.1E-16 2.8E-20 135.3 10.1 80 215-302 2-81 (96)
71 2cqb_A Peptidyl-prolyl CIS-tra 99.6 9.5E-16 3.2E-20 136.4 10.4 82 214-303 11-92 (102)
72 1x5t_A Splicing factor 3B subu 99.6 9.3E-16 3.2E-20 134.8 10.2 81 214-302 4-85 (96)
73 3s7r_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 131.0 11.2 78 214-300 10-87 (87)
74 2cpz_A CUG triplet repeat RNA- 99.6 2.2E-15 7.6E-20 137.2 12.7 82 214-303 24-105 (115)
75 2cpe_A RNA-binding protein EWS 99.6 1.6E-15 5.4E-20 137.7 11.6 92 497-588 12-103 (113)
76 2pe8_A Splicing factor 45; RRM 99.6 1.2E-15 4.1E-20 136.6 10.6 83 632-720 6-93 (105)
77 3ucg_A Polyadenylate-binding p 99.6 1.3E-15 4.3E-20 131.9 10.4 80 214-302 5-84 (89)
78 2cpf_A RNA binding motif prote 99.6 1.2E-15 4.2E-20 134.6 10.3 82 214-303 4-88 (98)
79 1whw_A Hypothetical protein ri 99.6 2E-15 6.8E-20 133.5 11.6 84 497-588 5-88 (99)
80 2jrs_A RNA-binding protein 39; 99.6 1.3E-15 4.3E-20 137.3 10.4 82 213-302 24-105 (108)
81 2do4_A Squamous cell carcinoma 99.6 2.4E-15 8.4E-20 133.3 12.1 80 214-302 16-95 (100)
82 2x1f_A MRNA 3'-END-processing 99.6 1.5E-15 5.1E-20 133.6 10.7 80 500-587 2-81 (96)
83 1x5s_A Cold-inducible RNA-bind 99.6 1.6E-15 5.4E-20 134.9 10.8 82 214-303 11-92 (102)
84 2e5h_A Zinc finger CCHC-type a 99.6 1.3E-15 4.3E-20 133.4 9.9 82 497-586 13-94 (94)
85 2dgo_A Cytotoxic granule-assoc 99.6 3.4E-15 1.2E-19 135.9 12.9 82 214-303 14-95 (115)
86 2cq0_A Eukaryotic translation 99.6 1.3E-15 4.4E-20 135.8 9.8 82 214-303 14-95 (103)
87 2dnz_A Probable RNA-binding pr 99.6 1.9E-15 6.6E-20 132.5 10.7 83 498-588 3-85 (95)
88 1p27_B RNA-binding protein 8A; 99.6 1.5E-15 5.2E-20 136.1 10.2 81 214-302 22-102 (106)
89 2dgs_A DAZ-associated protein 99.6 2.3E-15 7.9E-20 133.1 11.3 80 214-302 9-88 (99)
90 2ywk_A Putative RNA-binding pr 99.6 1.9E-15 6.6E-20 132.5 10.7 79 214-301 15-93 (95)
91 2cqc_A Arginine/serine-rich sp 99.6 1.5E-15 5.3E-20 133.0 10.0 82 497-586 12-93 (95)
92 1x5t_A Splicing factor 3B subu 99.6 1.9E-15 6.5E-20 132.8 10.5 83 498-588 3-86 (96)
93 1s79_A Lupus LA protein; RRM, 99.6 9.1E-16 3.1E-20 137.0 8.6 78 214-301 10-87 (103)
94 2ek1_A RNA-binding protein 12; 99.6 1.2E-15 4E-20 133.9 8.9 80 214-301 14-93 (95)
95 2cqp_A RNA-binding protein 12; 99.6 2.3E-15 7.9E-20 132.8 10.8 80 214-301 14-93 (98)
96 1x5u_A Splicing factor 3B subu 99.6 1.9E-15 6.6E-20 135.1 10.4 82 214-303 14-95 (105)
97 3n9u_C Cleavage and polyadenyl 99.6 1.8E-15 6.3E-20 145.5 10.9 80 214-301 54-135 (156)
98 2div_A TRNA selenocysteine ass 99.6 1.7E-15 6E-20 133.9 9.9 81 214-302 8-93 (99)
99 3ns6_A Eukaryotic translation 99.6 4.3E-16 1.5E-20 138.4 5.8 80 499-586 5-91 (100)
100 2dgp_A Bruno-like 4, RNA bindi 99.6 2.6E-15 8.9E-20 134.5 10.9 82 214-303 12-96 (106)
101 2khc_A Testis-specific RNP-typ 99.6 2E-15 6.7E-20 138.2 10.2 80 214-301 39-118 (118)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.3E-16 2.8E-20 129.2 7.1 76 216-300 1-76 (77)
103 2mss_A Protein (musashi1); RNA 99.6 7.1E-16 2.4E-20 129.0 6.6 75 217-300 1-75 (75)
104 3p5t_L Cleavage and polyadenyl 99.6 5.5E-16 1.9E-20 134.8 6.0 79 501-587 2-82 (90)
105 2dnm_A SRP46 splicing factor; 99.6 1.5E-15 5.3E-20 135.3 9.0 81 214-302 12-92 (103)
106 4a8x_A RNA-binding protein wit 99.6 1.6E-15 5.4E-20 130.9 8.5 81 214-302 3-84 (88)
107 2fy1_A RNA-binding motif prote 99.6 3.3E-15 1.1E-19 136.4 10.9 81 214-303 6-86 (116)
108 2dnh_A Bruno-like 5, RNA bindi 99.6 5.2E-15 1.8E-19 132.3 12.0 80 214-302 14-96 (105)
109 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.2E-15 1.1E-19 133.0 10.5 84 497-588 9-92 (102)
110 3ulh_A THO complex subunit 4; 99.6 3.8E-15 1.3E-19 133.7 10.9 79 214-301 28-106 (107)
111 3ucg_A Polyadenylate-binding p 99.6 4.6E-15 1.6E-19 128.3 11.0 79 500-587 6-84 (89)
112 2dgo_A Cytotoxic granule-assoc 99.6 6.2E-15 2.1E-19 134.2 12.3 84 497-588 12-95 (115)
113 1oo0_B CG8781-PA, drosophila Y 99.6 3.1E-15 1.1E-19 135.0 10.3 81 214-302 25-105 (110)
114 2cpf_A RNA binding motif prote 99.6 3.3E-15 1.1E-19 131.8 10.2 83 498-588 3-88 (98)
115 2d9p_A Polyadenylate-binding p 99.6 5E-15 1.7E-19 132.0 11.4 80 214-303 14-93 (103)
116 2lea_A Serine/arginine-rich sp 99.6 6E-16 2.1E-20 145.3 5.6 82 499-588 46-127 (135)
117 3s7r_A Heterogeneous nuclear r 99.6 4.7E-15 1.6E-19 127.8 10.8 80 497-585 8-87 (87)
118 1x5s_A Cold-inducible RNA-bind 99.6 2.7E-15 9.2E-20 133.4 9.4 84 497-588 9-92 (102)
119 2do4_A Squamous cell carcinoma 99.6 4.6E-15 1.6E-19 131.5 10.9 82 497-587 14-95 (100)
120 1u6f_A Tcubp1, RNA-binding pro 99.6 7.7E-15 2.6E-19 138.2 13.0 81 214-302 41-121 (139)
121 2cq0_A Eukaryotic translation 99.6 3E-15 1E-19 133.4 9.5 84 497-588 12-95 (103)
122 2dnm_A SRP46 splicing factor; 99.6 2.3E-15 7.7E-20 134.2 8.6 84 497-588 10-93 (103)
123 2dng_A Eukaryotic translation 99.6 8.1E-15 2.8E-19 130.7 12.3 79 214-302 14-92 (103)
124 2do0_A HnRNP M, heterogeneous 99.6 7.6E-15 2.6E-19 133.3 12.2 81 214-303 14-94 (114)
125 2kt5_A RNA and export factor-b 99.6 1.6E-14 5.6E-19 133.3 14.5 80 214-302 34-113 (124)
126 2cph_A RNA binding motif prote 99.6 5.8E-15 2E-19 132.4 11.2 82 214-303 14-97 (107)
127 1x5u_A Splicing factor 3B subu 99.6 3.1E-15 1.1E-19 133.7 9.4 84 497-588 12-95 (105)
128 1p1t_A Cleavage stimulation fa 99.6 2.3E-15 8E-20 134.3 8.5 80 214-301 7-86 (104)
129 1p27_B RNA-binding protein 8A; 99.6 2.8E-15 9.7E-20 134.3 9.0 82 498-587 21-102 (106)
130 2cpz_A CUG triplet repeat RNA- 99.6 6.4E-15 2.2E-19 134.1 11.4 84 497-588 22-105 (115)
131 2dgs_A DAZ-associated protein 99.6 5.6E-15 1.9E-19 130.7 10.6 83 497-588 7-89 (99)
132 1x4h_A RNA-binding protein 28; 99.6 4E-15 1.4E-19 134.4 9.6 81 214-302 14-100 (111)
133 2ywk_A Putative RNA-binding pr 99.6 4.9E-15 1.7E-19 129.9 9.9 80 498-586 14-93 (95)
134 2hvz_A Splicing factor, argini 99.6 3E-15 1E-19 133.0 8.6 75 216-303 1-75 (101)
135 2cq4_A RNA binding motif prote 99.6 5.5E-15 1.9E-19 134.3 10.5 80 214-302 24-103 (114)
136 2jrs_A RNA-binding protein 39; 99.6 2.5E-15 8.5E-20 135.4 8.1 82 497-586 23-104 (108)
137 1s79_A Lupus LA protein; RRM, 99.6 2.3E-15 7.8E-20 134.4 7.7 79 498-586 9-87 (103)
138 4a8x_A RNA-binding protein wit 99.6 4.1E-15 1.4E-19 128.3 9.0 80 499-586 3-83 (88)
139 1oo0_B CG8781-PA, drosophila Y 99.6 4.5E-15 1.6E-19 133.9 9.6 83 497-587 23-105 (110)
140 2cqd_A RNA-binding region cont 99.6 6.3E-15 2.1E-19 134.4 10.6 80 214-302 16-95 (116)
141 3ulh_A THO complex subunit 4; 99.6 7.3E-15 2.5E-19 131.8 10.9 81 497-586 26-106 (107)
142 3n9u_C Cleavage and polyadenyl 99.6 6E-15 2E-19 141.9 10.9 80 499-586 54-135 (156)
143 2mss_A Protein (musashi1); RNA 99.6 1.9E-15 6.5E-20 126.4 6.4 75 502-585 1-75 (75)
144 1x4e_A RNA binding motif, sing 99.6 7.3E-16 2.5E-20 132.3 3.9 80 214-301 4-83 (85)
145 2dgw_A Probable RNA-binding pr 99.6 1.4E-14 4.8E-19 126.0 12.0 78 214-302 9-86 (91)
146 2cq3_A RNA-binding protein 9; 99.6 1.3E-14 4.6E-19 129.2 12.1 80 214-303 14-93 (103)
147 2khc_A Testis-specific RNP-typ 99.6 3.7E-15 1.3E-19 136.3 8.7 82 497-586 37-118 (118)
148 1wi8_A EIF-4B, eukaryotic tran 99.6 6.2E-15 2.1E-19 131.7 9.9 80 214-303 14-94 (104)
149 1x4h_A RNA-binding protein 28; 99.6 9.7E-15 3.3E-19 131.9 11.2 84 497-588 12-101 (111)
150 2cpy_A RNA-binding protein 12; 99.6 4.4E-15 1.5E-19 135.1 8.9 78 214-301 14-92 (114)
151 2ki2_A SS-DNA binding protein 99.6 1.4E-15 4.7E-20 132.1 5.1 78 216-302 2-79 (90)
152 2dhg_A TRNA selenocysteine ass 99.6 5E-15 1.7E-19 132.2 8.9 80 214-302 8-89 (104)
153 2dh8_A DAZ-associated protein 99.6 4.6E-15 1.6E-19 132.7 8.7 80 214-302 15-94 (105)
154 2dgp_A Bruno-like 4, RNA bindi 99.6 7.9E-15 2.7E-19 131.4 10.1 84 497-588 10-96 (106)
155 2div_A TRNA selenocysteine ass 99.6 6.8E-15 2.3E-19 130.1 9.6 85 497-588 6-94 (99)
156 2cqp_A RNA-binding protein 12; 99.6 4.3E-15 1.5E-19 131.1 8.1 82 498-587 13-94 (98)
157 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.4E-15 4.9E-20 134.9 5.0 79 214-302 18-97 (100)
158 2db1_A Heterogeneous nuclear r 99.6 7.3E-15 2.5E-19 134.5 9.9 78 214-301 16-96 (118)
159 2dgv_A HnRNP M, heterogeneous 99.6 8.1E-15 2.8E-19 127.7 9.8 79 214-302 7-85 (92)
160 2fy1_A RNA-binding motif prote 99.6 7.8E-15 2.7E-19 133.9 10.1 82 498-588 5-86 (116)
161 2wbr_A GW182, gawky, LD47780P; 99.6 6.2E-15 2.1E-19 125.4 8.6 74 214-301 6-79 (89)
162 2dgx_A KIAA0430 protein; RRM d 99.6 6.7E-15 2.3E-19 129.5 9.2 78 214-302 8-89 (96)
163 2ek1_A RNA-binding protein 12; 99.6 3.6E-15 1.2E-19 130.7 7.4 81 498-586 13-93 (95)
164 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.8E-14 6.1E-19 128.4 12.0 79 214-302 14-92 (103)
165 2kxn_B Transformer-2 protein h 99.6 4.6E-15 1.6E-19 138.1 8.4 81 214-302 45-125 (129)
166 1uaw_A Mouse-musashi-1; RNP-ty 99.6 3.2E-15 1.1E-19 125.6 6.6 76 501-585 1-76 (77)
167 2wbr_A GW182, gawky, LD47780P; 99.6 9.6E-15 3.3E-19 124.3 9.5 74 499-586 6-79 (89)
168 2cph_A RNA binding motif prote 99.6 6.9E-15 2.4E-19 131.9 9.2 84 497-588 12-97 (107)
169 2rs2_A Musashi-1, RNA-binding 99.6 6.1E-15 2.1E-19 133.0 8.7 80 214-302 24-103 (109)
170 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.5E-14 5.1E-19 139.1 11.9 81 214-302 38-118 (156)
171 3ex7_B RNA-binding protein 8A; 99.6 6.2E-15 2.1E-19 136.4 8.8 81 214-302 21-101 (126)
172 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-14 4.3E-19 127.8 10.4 79 498-587 7-89 (96)
173 2dng_A Eukaryotic translation 99.6 1.5E-14 5E-19 129.0 10.8 81 497-587 12-92 (103)
174 2dnh_A Bruno-like 5, RNA bindi 99.6 9.9E-15 3.4E-19 130.5 9.5 81 498-587 13-96 (105)
175 1wel_A RNA-binding protein 12; 99.5 7.7E-15 2.6E-19 135.6 9.1 79 214-301 24-102 (124)
176 2cqd_A RNA-binding region cont 99.5 1.7E-14 5.7E-19 131.6 11.1 83 497-588 14-96 (116)
177 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.1E-14 3.9E-19 141.4 10.7 83 497-587 69-151 (165)
178 1iqt_A AUF1, heterogeneous nuc 99.5 2.8E-15 9.7E-20 125.3 5.5 75 217-300 1-75 (75)
179 2cq4_A RNA binding motif prote 99.5 1.1E-14 3.8E-19 132.3 9.9 78 500-586 25-102 (114)
180 2hgl_A HNRPF protein, heteroge 99.5 7.5E-15 2.6E-19 137.6 9.0 78 214-301 43-123 (136)
181 1p1t_A Cleavage stimulation fa 99.5 6.3E-15 2.2E-19 131.5 8.1 80 500-587 8-87 (104)
182 1sjq_A Polypyrimidine tract-bi 99.5 9.1E-15 3.1E-19 130.1 9.0 76 214-303 15-92 (105)
183 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.3E-14 7.9E-19 127.7 11.6 81 497-587 12-92 (103)
184 2cqg_A TDP-43, TAR DNA-binding 99.5 4E-14 1.4E-18 126.1 13.1 79 214-302 14-92 (103)
185 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.1E-14 7E-19 135.2 11.7 79 214-300 62-140 (140)
186 1wez_A HnRNP H', FTP-3, hetero 99.5 7.6E-15 2.6E-19 130.8 8.2 78 214-302 14-91 (102)
187 2jwn_A Embryonic polyadenylate 99.5 1.1E-14 3.8E-19 134.3 9.6 80 214-302 35-114 (124)
188 2do0_A HnRNP M, heterogeneous 99.5 2.8E-14 9.6E-19 129.5 12.0 83 497-588 12-94 (114)
189 1x4e_A RNA binding motif, sing 99.5 1.5E-15 5.2E-20 130.3 3.4 81 498-586 3-83 (85)
190 2cpi_A CCR4-NOT transcription 99.5 7.8E-15 2.7E-19 132.8 8.2 83 214-304 14-102 (111)
191 2err_A Ataxin-2-binding protei 99.5 1.4E-14 4.8E-19 130.6 9.9 79 214-302 28-106 (109)
192 2dis_A Unnamed protein product 99.5 8.7E-15 3E-19 131.8 8.5 82 214-303 7-92 (109)
193 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-14 4.3E-19 129.7 9.4 81 498-588 13-94 (104)
194 2krb_A Eukaryotic translation 99.5 3.2E-15 1.1E-19 127.2 5.2 73 215-297 1-80 (81)
195 2d9p_A Polyadenylate-binding p 99.5 1E-14 3.5E-19 129.9 8.6 82 497-588 12-93 (103)
196 2m2b_A RNA-binding protein 10; 99.5 4.5E-15 1.5E-19 138.6 6.5 81 214-303 22-108 (131)
197 2nlw_A Eukaryotic translation 99.5 7.3E-15 2.5E-19 131.6 7.6 78 214-301 14-98 (105)
198 2kxn_B Transformer-2 protein h 99.5 4.5E-15 1.5E-19 138.2 6.3 83 497-587 43-125 (129)
199 2dhg_A TRNA selenocysteine ass 99.5 6.5E-15 2.2E-19 131.4 7.1 82 497-587 6-89 (104)
200 1sjq_A Polypyrimidine tract-bi 99.5 1.7E-14 5.9E-19 128.3 9.7 78 497-588 13-92 (105)
201 1x4b_A Heterogeneous nuclear r 99.5 1.5E-14 5.1E-19 131.9 9.6 81 214-303 26-106 (116)
202 1u6f_A Tcubp1, RNA-binding pro 99.5 1.8E-14 6.1E-19 135.7 10.3 84 497-588 39-122 (139)
203 3ex7_B RNA-binding protein 8A; 99.5 1.2E-14 4.1E-19 134.5 8.8 84 497-588 19-102 (126)
204 2dgv_A HnRNP M, heterogeneous 99.5 1.8E-14 6.2E-19 125.4 9.5 80 498-587 6-85 (92)
205 2dgw_A Probable RNA-binding pr 99.5 3.5E-14 1.2E-18 123.4 11.3 79 498-587 8-86 (91)
206 2cq3_A RNA-binding protein 9; 99.5 4.6E-14 1.6E-18 125.7 12.3 82 497-588 12-93 (103)
207 2ki2_A SS-DNA binding protein 99.5 3.3E-15 1.1E-19 129.7 4.6 78 501-587 2-79 (90)
208 2kt5_A RNA and export factor-b 99.5 2.6E-14 8.9E-19 131.9 10.9 82 497-587 32-113 (124)
209 2lcw_A RNA-binding protein FUS 99.3 6.5E-16 2.2E-20 141.0 0.0 89 214-302 6-94 (116)
210 3r27_A HnRNP L, heterogeneous 99.5 1.6E-14 5.6E-19 127.1 9.0 75 214-302 20-96 (100)
211 2rs2_A Musashi-1, RNA-binding 99.5 1.9E-14 6.3E-19 129.9 9.6 82 497-587 22-103 (109)
212 1wg5_A Heterogeneous nuclear r 99.5 2.3E-14 8E-19 128.0 10.1 80 214-302 14-93 (104)
213 3r27_A HnRNP L, heterogeneous 99.5 2.4E-14 8.2E-19 126.1 9.9 77 497-587 18-96 (100)
214 2dh8_A DAZ-associated protein 99.5 1.3E-14 4.5E-19 129.7 8.1 82 497-587 13-94 (105)
215 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.2E-14 7.5E-19 135.0 10.1 81 497-585 60-140 (140)
216 2cpy_A RNA-binding protein 12; 99.5 1.5E-14 5.2E-19 131.5 8.5 79 498-586 13-92 (114)
217 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.3E-14 1.1E-18 136.7 11.3 83 497-587 36-118 (156)
218 3s6e_A RNA-binding protein 39; 99.5 3.5E-14 1.2E-18 128.8 10.6 88 346-434 4-91 (114)
219 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.7E-14 9.2E-19 138.8 10.7 81 214-302 71-151 (165)
220 2err_A Ataxin-2-binding protei 99.5 2.4E-14 8.1E-19 129.2 9.5 80 497-586 26-105 (109)
221 2jvr_A Nucleolar protein 3; RN 99.5 1.8E-14 6.2E-19 130.1 8.7 76 214-301 27-103 (111)
222 3pgw_S U1-70K; protein-RNA com 99.5 2.1E-14 7.2E-19 160.7 11.1 82 498-587 100-181 (437)
223 2hvz_A Splicing factor, argini 99.5 1.5E-14 5.3E-19 128.3 8.0 75 501-588 1-75 (101)
224 2dnn_A RNA-binding protein 12; 99.5 2.2E-14 7.6E-19 129.2 9.1 77 214-301 15-91 (109)
225 2m2b_A RNA-binding protein 10; 99.5 6.2E-15 2.1E-19 137.6 5.5 85 497-588 20-108 (131)
226 1iqt_A AUF1, heterogeneous nuc 99.5 8.5E-15 2.9E-19 122.4 5.7 75 502-585 1-75 (75)
227 1x4a_A Splicing factor, argini 99.5 5E-14 1.7E-18 126.9 11.2 79 214-303 21-99 (109)
228 2lmi_A GRSF-1, G-rich sequence 99.5 1.2E-14 4E-19 130.7 7.0 78 214-301 10-90 (107)
229 2j76_E EIF-4B, EIF4B, eukaryot 99.5 7.2E-15 2.5E-19 130.4 5.5 81 497-587 16-97 (100)
230 3q2s_C Cleavage and polyadenyl 99.5 1.8E-14 6.2E-19 147.5 9.1 80 214-301 67-148 (229)
231 1x5o_A RNA binding motif, sing 99.5 4.7E-14 1.6E-18 128.1 10.9 79 214-301 24-110 (114)
232 2dis_A Unnamed protein product 99.5 2E-14 6.9E-19 129.4 8.4 83 498-588 6-92 (109)
233 2jwn_A Embryonic polyadenylate 99.5 3.5E-14 1.2E-18 131.0 10.0 79 500-587 36-114 (124)
234 2nlw_A Eukaryotic translation 99.5 2E-14 6.8E-19 128.7 8.1 79 498-586 13-98 (105)
235 2db1_A Heterogeneous nuclear r 99.5 2.7E-14 9.4E-19 130.7 9.2 79 498-586 15-96 (118)
236 2la4_A Nuclear and cytoplasmic 99.5 5.5E-14 1.9E-18 124.7 10.8 77 496-586 23-99 (101)
237 1x4b_A Heterogeneous nuclear r 99.5 3.3E-14 1.1E-18 129.6 9.6 80 500-588 27-106 (116)
238 2cpx_A Hypothetical protein FL 99.5 3.4E-14 1.2E-18 129.2 9.6 82 214-303 24-105 (115)
239 2dha_A FLJ20171 protein; RRM d 99.5 2.4E-14 8.2E-19 131.8 8.5 78 214-301 22-103 (123)
240 2lea_A Serine/arginine-rich sp 99.5 9.9E-15 3.4E-19 136.9 6.1 81 214-302 46-126 (135)
241 1x4a_A Splicing factor, argini 99.5 6.2E-14 2.1E-18 126.2 10.9 81 497-588 19-99 (109)
242 2cqg_A TDP-43, TAR DNA-binding 99.5 7.3E-14 2.5E-18 124.4 11.1 81 497-587 12-92 (103)
243 2a3j_A U1 small nuclear ribonu 99.5 2.8E-14 9.6E-19 132.1 8.6 78 214-302 28-109 (127)
244 2ad9_A Polypyrimidine tract-bi 99.5 4E-14 1.4E-18 129.0 9.4 76 214-303 30-107 (119)
245 2krb_A Eukaryotic translation 99.5 1.2E-14 4.1E-19 123.6 5.4 73 500-582 1-80 (81)
246 2cpi_A CCR4-NOT transcription 99.5 2.2E-14 7.6E-19 129.8 7.5 83 498-588 13-101 (111)
247 2hgl_A HNRPF protein, heteroge 99.5 2.6E-14 9E-19 133.9 8.1 79 498-586 42-123 (136)
248 3lqv_A PRE-mRNA branch site pr 99.5 4.6E-14 1.6E-18 128.4 9.4 78 214-302 7-84 (115)
249 2xs2_A Deleted in azoospermia- 99.5 3.9E-14 1.3E-18 125.9 8.8 78 214-302 8-85 (102)
250 2dit_A HIV TAT specific factor 99.5 1.1E-13 3.9E-18 125.3 11.9 96 346-441 12-107 (112)
251 3lqv_A PRE-mRNA branch site pr 99.5 6E-14 2.1E-18 127.6 10.1 79 497-586 5-83 (115)
252 1jmt_A Splicing factor U2AF 35 99.5 6E-14 2E-18 125.4 9.6 85 634-718 1-103 (104)
253 2xnq_A Nuclear polyadenylated 99.5 8.8E-14 3E-18 122.6 10.6 74 213-302 20-94 (97)
254 2j8a_A Histone-lysine N-methyl 99.5 5.5E-14 1.9E-18 127.5 9.2 77 216-300 3-93 (136)
255 1fj7_A Nucleolin RBD1, protein 99.5 1.2E-14 3.9E-19 129.1 4.7 79 214-302 16-94 (101)
256 1wez_A HnRNP H', FTP-3, hetero 99.5 2.5E-14 8.6E-19 127.4 6.7 79 498-587 13-91 (102)
257 3v4m_A Splicing factor U2AF 65 99.5 1.5E-13 5.1E-18 122.9 11.8 86 348-434 4-95 (105)
258 2a3j_A U1 small nuclear ribonu 99.5 5.3E-14 1.8E-18 130.3 9.1 79 498-587 27-109 (127)
259 2fc9_A NCL protein; structure 99.5 9.5E-14 3.2E-18 123.2 10.3 78 214-303 14-91 (101)
260 2cq1_A PTB-like protein L; RRM 99.5 6.1E-14 2.1E-18 124.5 8.9 75 214-302 14-90 (101)
261 2jvr_A Nucleolar protein 3; RN 99.5 7E-14 2.4E-18 126.3 9.4 78 497-586 25-103 (111)
262 2fc8_A NCL protein; structure 99.5 1.2E-13 4.1E-18 122.7 10.9 79 214-303 14-92 (102)
263 1wg5_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 126.7 7.5 80 498-587 13-93 (104)
264 2ad9_A Polypyrimidine tract-bi 99.5 8.3E-14 2.8E-18 127.0 9.9 78 497-588 28-107 (119)
265 1x4d_A Matrin 3; structural ge 99.5 2.5E-14 8.6E-19 127.0 6.3 77 497-587 12-91 (102)
266 2fc9_A NCL protein; structure 99.5 9.7E-14 3.3E-18 123.1 9.9 80 497-588 12-91 (101)
267 1x4g_A Nucleolysin TIAR; struc 99.5 1.3E-13 4.4E-18 124.2 10.8 76 214-303 24-99 (109)
268 1wel_A RNA-binding protein 12; 99.5 1.8E-14 6.1E-19 133.1 5.2 81 497-586 22-102 (124)
269 2dnn_A RNA-binding protein 12; 99.5 8E-14 2.7E-18 125.5 9.3 76 500-586 16-91 (109)
270 2ytc_A PRE-mRNA-splicing facto 99.5 9.6E-14 3.3E-18 118.9 9.2 75 498-586 10-85 (85)
271 2dnq_A RNA-binding protein 4B; 99.5 1.3E-13 4.6E-18 119.5 10.1 74 214-303 7-80 (90)
272 2j8a_A Histone-lysine N-methyl 99.5 9.3E-14 3.2E-18 126.0 9.3 78 501-586 3-94 (136)
273 2lcw_A RNA-binding protein FUS 99.2 3.5E-15 1.2E-19 136.1 0.0 90 498-587 5-94 (116)
274 2la4_A Nuclear and cytoplasmic 99.5 7.3E-14 2.5E-18 123.9 8.6 74 214-301 26-99 (101)
275 1nu4_A U1A RNA binding domain; 99.5 4.1E-14 1.4E-18 124.5 6.9 78 214-302 7-88 (97)
276 2cq1_A PTB-like protein L; RRM 99.5 1E-13 3.5E-18 123.0 9.4 77 497-587 12-90 (101)
277 2e5j_A Methenyltetrahydrofolat 99.5 1.7E-13 5.7E-18 120.7 10.7 76 214-302 18-93 (97)
278 1x5o_A RNA binding motif, sing 99.5 6.7E-14 2.3E-18 127.0 8.4 81 497-586 22-110 (114)
279 3q2s_C Cleavage and polyadenyl 99.5 5.5E-14 1.9E-18 144.0 8.7 80 499-586 67-148 (229)
280 1x4c_A Splicing factor, argini 99.5 3.2E-13 1.1E-17 121.5 12.5 74 214-302 14-92 (108)
281 1nu4_A U1A RNA binding domain; 99.5 5.6E-14 1.9E-18 123.6 7.3 80 497-587 5-88 (97)
282 2ytc_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.8E-18 118.5 9.0 75 213-301 10-85 (85)
283 1fjc_A Nucleolin RBD2, protein 99.5 8.7E-14 3E-18 122.2 8.5 76 214-302 15-90 (96)
284 2fc8_A NCL protein; structure 99.5 9.5E-14 3.3E-18 123.3 8.7 81 497-588 12-92 (102)
285 2lmi_A GRSF-1, G-rich sequence 99.5 2.4E-14 8.4E-19 128.6 4.9 80 497-586 8-90 (107)
286 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-14 4.3E-19 128.9 3.0 80 498-587 15-94 (101)
287 1x4g_A Nucleolysin TIAR; struc 99.5 2.8E-13 9.5E-18 122.0 11.6 79 496-588 21-99 (109)
288 2hgm_A HNRPF protein, heteroge 99.5 5.1E-14 1.8E-18 129.9 6.7 78 214-301 41-119 (126)
289 1why_A Hypothetical protein ri 99.5 1.4E-13 4.6E-18 121.3 9.1 75 214-302 16-92 (97)
290 2dnq_A RNA-binding protein 4B; 99.5 1.9E-13 6.6E-18 118.5 9.8 76 497-588 5-80 (90)
291 1wex_A Hypothetical protein (r 99.5 8.5E-14 2.9E-18 124.3 7.7 75 214-302 14-90 (104)
292 2cpx_A Hypothetical protein FL 99.5 3.5E-14 1.2E-18 129.1 5.3 84 497-588 22-105 (115)
293 1x4c_A Splicing factor, argini 99.5 2.3E-13 7.8E-18 122.4 10.5 75 498-587 13-92 (108)
294 2f3j_A RNA and export factor b 99.5 1.2E-13 4E-18 135.8 9.2 80 214-302 87-166 (177)
295 2jvo_A Nucleolar protein 3; nu 99.5 1.9E-13 6.3E-18 123.1 9.8 73 214-302 30-102 (108)
296 2dha_A FLJ20171 protein; RRM d 99.5 1.2E-13 4.2E-18 127.0 8.6 80 497-586 20-103 (123)
297 2cpj_A Non-POU domain-containi 99.4 1.2E-13 4.3E-18 122.0 8.3 75 214-302 14-88 (99)
298 1whx_A Hypothetical protein ri 99.4 8.8E-14 3E-18 125.8 7.2 75 214-302 9-83 (111)
299 1wex_A Hypothetical protein (r 99.4 1.2E-13 4E-18 123.4 7.8 76 498-587 13-90 (104)
300 1x4f_A Matrin 3; structural ge 99.4 1.7E-13 5.8E-18 123.5 8.9 75 214-302 24-101 (112)
301 2dgt_A RNA-binding protein 30; 99.4 3.7E-13 1.3E-17 117.2 10.8 76 497-588 7-82 (92)
302 2xnq_A Nuclear polyadenylated 99.4 3.7E-13 1.3E-17 118.6 10.8 74 497-586 19-93 (97)
303 3egn_A RNA-binding protein 40; 99.4 5.1E-14 1.7E-18 133.4 5.6 86 214-302 44-129 (143)
304 1why_A Hypothetical protein ri 99.4 2.2E-13 7.5E-18 119.9 9.2 77 497-587 14-92 (97)
305 2diu_A KIAA0430 protein; struc 99.4 1.3E-13 4.3E-18 118.5 7.3 72 213-302 7-83 (96)
306 2dnp_A RNA-binding protein 14; 99.4 2.8E-13 9.5E-18 117.5 9.7 76 497-588 6-81 (90)
307 2xs2_A Deleted in azoospermia- 99.4 1.4E-13 4.8E-18 122.3 7.9 78 499-587 8-85 (102)
308 2cpj_A Non-POU domain-containi 99.4 1.7E-13 5.9E-18 121.0 8.2 77 497-587 12-88 (99)
309 2e5j_A Methenyltetrahydrofolat 99.4 2.2E-13 7.4E-18 120.0 8.8 78 497-587 16-93 (97)
310 1whx_A Hypothetical protein ri 99.4 1.5E-13 5E-18 124.4 7.8 75 499-587 9-83 (111)
311 2jvo_A Nucleolar protein 3; nu 99.4 3.5E-13 1.2E-17 121.2 10.1 75 497-587 28-102 (108)
312 2cpd_A Apobec-1 stimulating pr 99.4 7.6E-13 2.6E-17 116.9 12.1 74 214-303 14-89 (99)
313 2dgt_A RNA-binding protein 30; 99.4 7.7E-13 2.6E-17 115.2 11.8 74 214-303 9-82 (92)
314 2hgn_A Heterogeneous nuclear r 99.4 3.8E-14 1.3E-18 133.2 3.6 78 214-302 45-122 (139)
315 1x4d_A Matrin 3; structural ge 99.4 9E-14 3.1E-18 123.4 5.6 75 214-302 14-91 (102)
316 2f3j_A RNA and export factor b 99.4 2.5E-13 8.5E-18 133.4 9.4 82 497-587 85-166 (177)
317 2kvi_A Nuclear polyadenylated 99.4 2.4E-13 8.3E-18 119.4 8.3 73 214-302 9-82 (96)
318 2cqh_A IGF-II mRNA-binding pro 99.4 3.8E-13 1.3E-17 117.3 9.1 74 214-302 7-82 (93)
319 1wf1_A RNA-binding protein RAL 99.4 6.1E-13 2.1E-17 120.0 10.5 73 214-302 26-99 (110)
320 1fjc_A Nucleolin RBD2, protein 99.4 1.4E-13 4.9E-18 120.7 6.2 77 498-587 14-90 (96)
321 2dgu_A Heterogeneous nuclear r 99.4 4.1E-13 1.4E-17 119.6 9.2 74 214-303 10-83 (103)
322 2dgu_A Heterogeneous nuclear r 99.4 5.3E-13 1.8E-17 118.8 9.8 75 498-588 9-83 (103)
323 2dnp_A RNA-binding protein 14; 99.4 4.7E-13 1.6E-17 116.0 9.2 73 214-302 8-80 (90)
324 1x4f_A Matrin 3; structural ge 99.4 1.1E-13 3.9E-18 124.7 5.3 77 497-587 22-101 (112)
325 3egn_A RNA-binding protein 40; 99.4 4.4E-13 1.5E-17 126.9 9.4 88 497-587 42-129 (143)
326 1wg1_A KIAA1579 protein, homol 99.4 5.4E-13 1.8E-17 115.2 9.2 74 214-302 4-77 (88)
327 2e44_A Insulin-like growth fac 99.4 2.8E-13 9.5E-18 118.9 7.4 77 214-302 14-91 (96)
328 2kvi_A Nuclear polyadenylated 99.4 3.7E-13 1.3E-17 118.2 8.2 75 497-587 7-82 (96)
329 2hgm_A HNRPF protein, heteroge 99.4 1.8E-13 6.1E-18 126.3 6.0 81 497-586 39-119 (126)
330 3pgw_S U1-70K; protein-RNA com 99.4 4.6E-13 1.6E-17 149.8 10.5 81 214-302 101-181 (437)
331 2cpd_A Apobec-1 stimulating pr 99.4 1.2E-12 4.1E-17 115.6 11.1 75 498-588 13-89 (99)
332 2cqh_A IGF-II mRNA-binding pro 99.4 4.1E-13 1.4E-17 117.1 7.9 75 498-587 6-82 (93)
333 2e5g_A U6 snRNA-specific termi 99.4 8E-13 2.7E-17 115.6 9.5 74 214-301 7-80 (94)
334 1wg1_A KIAA1579 protein, homol 99.4 5.7E-13 2E-17 115.1 8.3 74 499-587 4-77 (88)
335 1wf1_A RNA-binding protein RAL 99.4 8E-13 2.7E-17 119.2 9.5 74 498-587 25-99 (110)
336 2e44_A Insulin-like growth fac 99.4 4.7E-13 1.6E-17 117.4 7.6 78 498-587 13-91 (96)
337 2hgn_A Heterogeneous nuclear r 99.4 1.2E-13 4E-18 129.9 3.8 79 498-587 44-122 (139)
338 3zzy_A Polypyrimidine tract-bi 99.4 1.8E-12 6.3E-17 119.6 11.5 77 214-303 27-106 (130)
339 3ue2_A Poly(U)-binding-splicin 99.4 1.1E-12 3.7E-17 119.7 9.7 82 348-435 19-108 (118)
340 2hzc_A Splicing factor U2AF 65 99.4 7.8E-13 2.7E-17 113.6 8.2 71 214-299 5-86 (87)
341 2dnl_A Cytoplasmic polyadenyla 99.4 4.7E-13 1.6E-17 121.6 7.1 74 214-298 7-83 (114)
342 2pe8_A Splicing factor 45; RRM 99.4 1.9E-12 6.4E-17 115.7 10.7 81 498-586 6-92 (105)
343 2diu_A KIAA0430 protein; struc 99.4 7.2E-13 2.5E-17 113.8 7.4 71 499-587 8-83 (96)
344 2cq2_A Hypothetical protein LO 99.4 7.9E-13 2.7E-17 119.3 8.0 76 497-586 22-104 (114)
345 2e5g_A U6 snRNA-specific termi 99.4 9.5E-13 3.2E-17 115.1 7.9 75 498-586 6-80 (94)
346 1sjr_A Polypyrimidine tract-bi 99.4 1.8E-12 6.1E-17 124.2 10.3 78 214-303 45-124 (164)
347 3zzy_A Polypyrimidine tract-bi 99.4 2.1E-12 7.1E-17 119.2 10.4 77 499-588 27-106 (130)
348 2voo_A Lupus LA protein; RNA-b 99.4 1.3E-12 4.6E-17 130.1 9.6 78 214-301 108-185 (193)
349 1x5p_A Negative elongation fac 99.4 2.5E-12 8.6E-17 113.1 10.1 73 214-302 14-86 (97)
350 3d2w_A TAR DNA-binding protein 99.3 1.6E-12 5.4E-17 112.6 8.3 72 214-302 10-83 (89)
351 2hzc_A Splicing factor U2AF 65 99.3 1.6E-12 5.5E-17 111.6 8.2 71 499-584 5-86 (87)
352 1x5p_A Negative elongation fac 99.3 2.9E-12 1E-16 112.7 9.9 75 497-587 12-86 (97)
353 1sjr_A Polypyrimidine tract-bi 99.3 2.2E-12 7.6E-17 123.5 9.6 78 499-588 45-124 (164)
354 3beg_B Splicing factor, argini 99.3 8.1E-13 2.8E-17 120.3 6.2 73 214-301 15-92 (115)
355 2cq2_A Hypothetical protein LO 99.3 1.2E-12 4.1E-17 118.1 7.2 74 214-301 24-104 (114)
356 2dnl_A Cytoplasmic polyadenyla 99.3 1.3E-12 4.6E-17 118.6 7.2 77 498-585 6-85 (114)
357 3d2w_A TAR DNA-binding protein 99.3 3.6E-12 1.2E-16 110.3 9.2 73 497-586 8-82 (89)
358 2e5i_A Heterogeneous nuclear r 99.3 8.2E-12 2.8E-16 114.7 11.8 76 214-303 24-102 (124)
359 3beg_B Splicing factor, argini 99.3 1.8E-12 6.2E-17 117.9 6.4 73 499-586 15-92 (115)
360 2e5i_A Heterogeneous nuclear r 99.3 6.9E-12 2.4E-16 115.2 9.9 73 501-587 26-101 (124)
361 1wf0_A TDP-43, TAR DNA-binding 99.3 2E-12 6.8E-17 111.6 5.5 75 214-303 4-78 (88)
362 2voo_A Lupus LA protein; RNA-b 99.3 6.6E-12 2.2E-16 125.0 10.0 77 500-586 109-185 (193)
363 2bz2_A Negative elongation fac 99.3 8E-12 2.7E-16 114.7 8.9 75 497-587 36-110 (121)
364 2bz2_A Negative elongation fac 99.3 9.7E-12 3.3E-16 114.2 9.1 73 214-302 38-110 (121)
365 1wf0_A TDP-43, TAR DNA-binding 99.2 7.5E-12 2.6E-16 107.9 6.5 75 499-588 4-78 (88)
366 1jmt_A Splicing factor U2AF 35 99.2 6.7E-12 2.3E-16 112.0 4.0 73 219-300 19-103 (104)
367 3u1l_A PRE-mRNA-splicing facto 99.2 2E-11 7E-16 124.6 7.7 76 498-587 132-228 (240)
368 3u1l_A PRE-mRNA-splicing facto 99.2 2.1E-11 7E-16 124.6 7.7 75 213-301 132-227 (240)
369 3dxb_A Thioredoxin N-terminall 99.1 8.3E-11 2.9E-15 119.6 10.1 82 633-720 123-212 (222)
370 2d9o_A DNAJ (HSP40) homolog, s 98.9 4.3E-09 1.5E-13 92.8 10.4 74 500-588 10-90 (100)
371 2d9o_A DNAJ (HSP40) homolog, s 98.9 5.2E-09 1.8E-13 92.3 10.4 73 215-302 10-89 (100)
372 3tht_A Alkylated DNA repair pr 98.9 2.4E-09 8.1E-14 115.1 7.9 74 214-301 17-97 (345)
373 3tht_A Alkylated DNA repair pr 98.9 3.1E-09 1.1E-13 114.2 8.3 76 497-586 15-97 (345)
374 2dnr_A Synaptojanin-1; RRM dom 98.7 3.9E-08 1.3E-12 83.7 9.5 80 632-719 5-84 (91)
375 3dxb_A Thioredoxin N-terminall 98.7 4.6E-08 1.6E-12 99.2 11.2 82 347-434 122-211 (222)
376 1owx_A Lupus LA protein, SS-B, 98.6 4.8E-08 1.6E-12 88.6 7.3 75 213-301 16-94 (121)
377 2dnr_A Synaptojanin-1; RRM dom 98.6 8.9E-08 3.1E-12 81.5 7.8 71 499-586 6-84 (91)
378 1ufw_A Synaptojanin 2; RNP dom 98.5 1.3E-07 4.3E-12 80.9 7.1 80 631-717 12-91 (95)
379 1owx_A Lupus LA protein, SS-B, 98.5 1.3E-07 4.4E-12 85.8 7.1 75 498-586 16-94 (121)
380 1ufw_A Synaptojanin 2; RNP dom 98.4 5.9E-07 2E-11 76.8 7.0 70 213-299 13-91 (95)
381 2l9w_A U4/U6 snRNA-associated- 98.3 2E-06 6.9E-11 74.8 8.5 71 634-717 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.2 7.4E-06 2.5E-10 71.3 10.2 76 497-586 18-98 (117)
383 1wey_A Calcipressin 1; structu 97.7 6.6E-05 2.3E-09 65.3 7.5 78 634-719 5-82 (104)
384 1wey_A Calcipressin 1; structu 97.2 0.00073 2.5E-08 58.7 7.5 75 499-587 4-83 (104)
385 1whv_A Poly(A)-specific ribonu 96.8 0.0022 7.6E-08 54.8 6.4 59 212-286 12-70 (100)
386 1whv_A Poly(A)-specific ribonu 96.6 0.0052 1.8E-07 52.5 7.2 56 499-571 15-70 (100)
387 1uw4_A UPF3X; nonsense mediate 96.6 0.011 3.9E-07 50.3 9.3 79 216-302 2-87 (91)
388 1uw4_A UPF3X; nonsense mediate 96.4 0.018 6.1E-07 49.1 9.4 79 501-587 2-87 (91)
389 1wwh_A Nucleoporin 35, nucleop 96.4 0.0096 3.3E-07 53.2 8.0 70 634-718 24-94 (119)
390 2dhx_A Poly (ADP-ribose) polym 96.2 0.017 5.7E-07 50.0 8.2 70 214-300 7-81 (104)
391 3ctr_A Poly(A)-specific ribonu 96.1 0.0054 1.8E-07 52.6 4.6 55 216-286 6-60 (101)
392 3p3d_A Nucleoporin 53; structu 96.0 0.01 3.4E-07 53.7 6.4 60 660-720 21-98 (132)
393 3ctr_A Poly(A)-specific ribonu 96.0 0.0061 2.1E-07 52.2 4.4 54 501-571 7-60 (101)
394 2dhx_A Poly (ADP-ribose) polym 95.9 0.04 1.4E-06 47.6 9.3 72 498-586 6-82 (104)
395 1wwh_A Nucleoporin 35, nucleop 95.8 0.019 6.3E-07 51.3 7.1 71 214-300 23-94 (119)
396 3p3d_A Nucleoporin 53; structu 94.8 0.04 1.4E-06 49.8 5.9 86 499-586 6-97 (132)
397 2l08_A Regulator of nonsense t 94.6 0.034 1.2E-06 47.7 4.7 81 214-302 8-95 (97)
398 2l08_A Regulator of nonsense t 93.3 0.11 3.6E-06 44.7 5.3 80 500-587 9-95 (97)
399 3pq1_A Poly(A) RNA polymerase; 93.2 0.057 2E-06 59.8 4.5 56 214-283 52-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 92.9 0.067 2.3E-06 59.3 4.4 55 500-568 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 69.8 7 0.00024 43.9 7.2 57 214-287 439-495 (507)
402 3d45_A Poly(A)-specific ribonu 67.3 8.1 0.00028 43.3 7.0 56 500-572 440-495 (507)
403 3msw_A Uncharacterized protein 35.3 32 0.0011 31.3 4.0 14 126-139 116-129 (145)
404 2g0c_A ATP-dependent RNA helic 33.6 68 0.0023 25.3 5.5 73 502-586 2-75 (76)
405 4e8u_A Putative uncharacterize 32.0 65 0.0022 30.3 5.7 56 217-283 14-81 (172)
406 4eyt_A Telomerase associated p 27.1 2.1E+02 0.0072 23.6 7.1 56 214-285 11-66 (129)
407 4e8u_A Putative uncharacterize 25.0 91 0.0031 29.3 5.3 52 501-563 13-75 (172)
408 4eyt_A Telomerase associated p 24.4 3E+02 0.01 22.7 8.2 57 498-570 10-66 (129)
409 3msw_A Uncharacterized protein 21.3 53 0.0018 29.9 2.8 38 24-69 86-129 (145)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1e-36 Score=324.06 Aligned_cols=238 Identities=18% Similarity=0.265 Sum_probs=208.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.|| |.. |++ |+++|||||.|.+.++|..|+..|||..|.|+
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~--------~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 85 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKY--------CFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRER 85 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEE--------EEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEE--------EEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCe
Confidence 669999999999999999999999999 776 776 56789999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|.++. ..++|+|+||+ ..+.+
T Consensus 86 ~i~v~~~~----------------------------------------------~~~~l~v~nlp--~~~t~-------- 109 (284)
T 3smz_A 86 ELSVQLQP----------------------------------------------TDALLCVANLP--PSLTQ-------- 109 (284)
T ss_dssp ECEEEECC----------------------------------------------CSCEEEEESCC--TTCCH--------
T ss_pred EEEEEecC----------------------------------------------CCCEEEEcCCC--CcCCH--------
Confidence 99997632 24689999993 33332
Q ss_pred HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
++|+++|+.||.|..|.+.. +.+.|+|||.|.+.++|.+|+..|||..++|+.|.+.+......
T Consensus 110 -~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~----------- 177 (284)
T 3smz_A 110 -QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQL----------- 177 (284)
T ss_dssp -HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGGC-----------
T ss_pred -HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC-----------
Confidence 88999999999999997652 34689999999999999999999999999999999987643210
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCC-CHHHHHHHHHhcCcce
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDL-TQEEFVEVMQKCGLVM 528 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~-t~e~L~~~F~~~G~I~ 528 (773)
.......++|||+|||.++ |+++|+++|+.||.|.
T Consensus 178 --------------------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 178 --------------------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPT 213 (284)
T ss_dssp --------------------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCS
T ss_pred --------------------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeE
Confidence 0112356899999999995 9999999999999998
Q ss_pred eccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 529 KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 529 ~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.|+|+.++ +|.++|+|||+|.+.++|.+|+..|||..|.|++|+|.+|..
T Consensus 214 --------~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 214 --------FCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp --------EEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred --------EEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 79999998 489999999999999999999999999999999999999983
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=8.2e-37 Score=326.06 Aligned_cols=245 Identities=19% Similarity=0.218 Sum_probs=209.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|+++.. | ++|||||+|.+.++|..||+ +|+..|.|+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~-~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~ 108 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIH--------VDVADSLK-K-NFRFARIEFARYDGALAAIT-KTHKVVGQN 108 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-S-SSEEEEEEESSHHHHHHHHT-TTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-C-CcEEEEEEECCHHHHHHHHH-hCCcEeCCc
Confidence 7899999999999999999999999999998 99999886 4 58999999999999999996 899999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|.++. .++|+|+||+ ..+.+
T Consensus 109 ~i~v~~~~-----------------------------------------------~~~l~v~nlp--~~~t~-------- 131 (292)
T 2ghp_A 109 EIIVSHLT-----------------------------------------------ECTLWMTNFP--PSYTQ-------- 131 (292)
T ss_dssp ECEEEECC-----------------------------------------------SCEEEEECCC--TTCCH--------
T ss_pred EEEEEECC-----------------------------------------------CCEEEEECCC--CCCCH--------
Confidence 99997642 5689999993 33332
Q ss_pred HHHHHHHhhccC-CEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHH
Q psy2160 374 QQDLREECSKCG-HVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449 (773)
Q Consensus 374 ~edL~e~f~k~G-~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~ 449 (773)
++|+++|+.|| .|..|.+.. +.+.|+|||.|.+.++|.+|+..|||..+.|+.|.|.+..+.....
T Consensus 132 -~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~--------- 201 (292)
T 2ghp_A 132 -RNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSK--------- 201 (292)
T ss_dssp -HHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-------------
T ss_pred -HHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccc---------
Confidence 88999999999 999998864 3478999999999999999999999999999999998865432100
Q ss_pred HHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcce
Q psy2160 450 ARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVM 528 (773)
Q Consensus 450 ~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~ 528 (773)
+. .......++|||+|||.+ +|+++|+++|+.||.|.
T Consensus 202 -~~-----------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~ 239 (292)
T 2ghp_A 202 -RT-----------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIE 239 (292)
T ss_dssp -----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEE
T ss_pred -cc-----------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCee
Confidence 00 011345789999999999 99999999999999999
Q ss_pred eccCCCceEEEEEecCC-CCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 529 KDVDTNQMKIKLYTDPY-TKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 529 ~~~~~~~~~i~l~~d~~-tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.|+|+.+.. ||.++|||||+|.+.++|.+|+ .|||..|.|++|.|.+|..
T Consensus 240 --------~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 240 --------KINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK 290 (292)
T ss_dssp --------EEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred --------EEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence 799999886 6899999999999999999999 9999999999999999983
No 3
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3.1e-35 Score=312.55 Aligned_cols=243 Identities=19% Similarity=0.221 Sum_probs=211.2
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCee
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ 427 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~ 427 (773)
.+++|+|+||+ ..+.+ ++|+++|+.|| |..|.+ +.++|+|||.|.+.++|.+|+..|||..+.|+.
T Consensus 21 ~~~~l~V~nLp--~~~te---------~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 86 (284)
T 3smz_A 21 NRRKILIRGLP--GDVTN---------QEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERE 86 (284)
T ss_dssp CCCEEEEECCC--TTCCH---------HHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCC--CCCCH---------HHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeE
Confidence 46899999994 44443 88999999999 988887 456899999999999999999999999999999
Q ss_pred EEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcC
Q psy2160 428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSN 507 (773)
Q Consensus 428 I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~n 507 (773)
|.+.+. ...++|||+|
T Consensus 87 i~v~~~----------------------------------------------------------------~~~~~l~v~n 102 (284)
T 3smz_A 87 LSVQLQ----------------------------------------------------------------PTDALLCVAN 102 (284)
T ss_dssp CEEEEC----------------------------------------------------------------CCSCEEEEES
T ss_pred EEEEec----------------------------------------------------------------CCCCEEEEcC
Confidence 999752 1357999999
Q ss_pred CCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 508 LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 508 Lp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
||.++|+++|+++|+.||.|. .|+++.+..+|.++|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus 103 lp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 103 LPPSLTQQQFEELVRPFGSLE--------RCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp CCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCCcCCHHHHHHHHHhcCCee--------EEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 999999999999999999999 799999998899999999999999999999999999999999999999873
Q ss_pred cccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHh
Q psy2160 588 TMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECS 667 (773)
Q Consensus 588 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~ 667 (773)
.... ......++|+|+||+.. +.+ +++|+++|+
T Consensus 175 ~~~~-------------------------------------~~~~~~~~l~v~nlp~~--~~~--------~~~l~~~f~ 207 (284)
T 3smz_A 175 GQLT-------------------------------------PALLHSRCLCVDRLPPG--FND--------VDALCRALS 207 (284)
T ss_dssp GGCC-------------------------------------TTTTSCSEEEEECCCTT--CCC--------HHHHHHHTC
T ss_pred CCCC-------------------------------------cccCCccEEEEecCCcc--cCC--------HHHHHHHhh
Confidence 2110 01134589999999765 311 389999999
Q ss_pred cCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCccc
Q psy2160 668 KCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTR 723 (773)
Q Consensus 668 ~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~ 723 (773)
+||.|..|.|.. +.+.|+|||.|.++++|.+|+..|||+.|+||+|.|.|+..+..
T Consensus 208 ~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 208 AVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp SSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 999999998754 56689999999999999999999999999999999999876543
No 4
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.3e-34 Score=305.91 Aligned_cols=246 Identities=21% Similarity=0.321 Sum_probs=199.9
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC--CCCCeEEEEEecCHHHHHHHHHHhCCccc
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWF 423 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d--~~~~G~afV~F~~~e~A~~Ai~~lng~~~ 423 (773)
....++|+|+||+ ..+.+ ++|+++|+.||.|..|.+.. ..+.|+|||.|.+.++|.+|+. |||..+
T Consensus 38 ~~~~~~l~V~nLp--~~~t~---------~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~ 105 (292)
T 2ghp_A 38 NRELTTVLVKNLP--KSYNQ---------NKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV 105 (292)
T ss_dssp ----CEEEEEEEC--TTCCH---------HHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred CCCCCEEEEeCCC--CCCCH---------HHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe
Confidence 4568899999993 34433 88999999999999998764 2357999999999999999996 899999
Q ss_pred CCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEE
Q psy2160 424 GQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKV 503 (773)
Q Consensus 424 ~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l 503 (773)
+|+.|.+.+. ..++|
T Consensus 106 ~g~~i~v~~~-----------------------------------------------------------------~~~~l 120 (292)
T 2ghp_A 106 GQNEIIVSHL-----------------------------------------------------------------TECTL 120 (292)
T ss_dssp TTEECEEEEC-----------------------------------------------------------------CSCEE
T ss_pred CCcEEEEEEC-----------------------------------------------------------------CCCEE
Confidence 9999999752 35799
Q ss_pred EEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEE
Q psy2160 504 YVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 582 (773)
Q Consensus 504 ~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V 582 (773)
||+|||.++|+++|+++|+.|| .|. .|+|+.+.. |.++|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 121 ~v~nlp~~~t~~~l~~~f~~~G~~i~--------~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 191 (292)
T 2ghp_A 121 WMTNFPPSYTQRNIRDLLQDINVVAL--------SIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVT 191 (292)
T ss_dssp EEECCCTTCCHHHHHHHHHHTTCCCC--------EEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred EEECCCCCCCHHHHHHHHHHhCCCeE--------EEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 9999999999999999999999 998 799999886 889999999999999999999999999999999999
Q ss_pred EEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHH
Q psy2160 583 ERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDL 662 (773)
Q Consensus 583 ~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl 662 (773)
.++....... +. .......++|+|+||+... ++ +++|
T Consensus 192 ~~a~~~~~~~-----------~~----------------------~~~~~~~~~l~v~nlp~~~-~t---------~~~l 228 (292)
T 2ghp_A 192 KVSNPLEKSK-----------RT----------------------DSATLEGREIMIRNLSTEL-LD---------ENLL 228 (292)
T ss_dssp EECCCC------------------------------------------CCTTTEEEEEEECTTT-CC---------HHHH
T ss_pred EECCCCcccc-----------cc----------------------cccCCCCceEEEECCCccc-CC---------HHHH
Confidence 9987321110 00 0112346899999997540 22 3899
Q ss_pred HHHHhcCCceeEEEecC-----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 663 REECSKCGHVKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 663 ~~~f~~fG~V~~v~i~~-----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
+++|++||.|..|.|.. +.++|+|||.|.++++|.+|+ .|||+.|+||+|.|.|...+
T Consensus 229 ~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 229 RESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999999999998875 556899999999999999999 99999999999999997765
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=1e-27 Score=243.98 Aligned_cols=166 Identities=21% Similarity=0.320 Sum_probs=145.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+.++|||+|||.++|+++|+++|++||.|. +|+|++|..+|+++|||||+|.+.++|.+||..||+..+.|
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPIL--------SIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 84 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCC
Confidence 4578999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
+.|+|.++..... .. ....++|+|+||+.. +++
T Consensus 85 ~~i~~~~~~~~~~------------~~--------------------------~~~~~~l~v~nl~~~--~t~------- 117 (213)
T 4f02_A 85 KPVRIMWSQRDPS------------LR--------------------------KSGVGNIFIKNLDKS--IDN------- 117 (213)
T ss_dssp EECEEEECCCCTH------------HH--------------------------HHCTTEEEEESCCTT--CCH-------
T ss_pred ccccccccccccc------------cc--------------------------ccccccceECCcccc--cHH-------
Confidence 9999998873210 00 012368999999765 443
Q ss_pred HHHHHHHHHhcCCceeEEEecC--CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160 658 YQQDLREECSKCGHVKKVVLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 720 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~--~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg 720 (773)
++|+++|++||.|..|.|.. +.++|+|||.|.+.++|.+|+..|||..|+||+|.|.++..
T Consensus 118 --~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 118 --KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp --HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred --HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 89999999999999997753 44689999999999999999999999999999999999764
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=5.9e-27 Score=227.98 Aligned_cols=165 Identities=25% Similarity=0.400 Sum_probs=150.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |++++++.+|.++|||||.|.+.++|..|++.|++..+.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINT--------CRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 4689999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|.++... .
T Consensus 74 ~l~v~~~~~~----------------------------------------------------------~----------- 84 (168)
T 1b7f_A 74 RLKVSYARPG----------------------------------------------------------G----------- 84 (168)
T ss_dssp ECEEEECCCC----------------------------------------------------------S-----------
T ss_pred EEEEEecCCC----------------------------------------------------------c-----------
Confidence 9999765310 0
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
. .
T Consensus 85 -~----------------------------------------------------------~------------------- 86 (168)
T 1b7f_A 85 -E----------------------------------------------------------S------------------- 86 (168)
T ss_dssp -S----------------------------------------------------------T-------------------
T ss_pred -c----------------------------------------------------------c-------------------
Confidence 0 0
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
...++|||+|||.++|+++|+++|++||.|.
T Consensus 87 --------------------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~----- 117 (168)
T 1b7f_A 87 --------------------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIV----- 117 (168)
T ss_dssp --------------------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEE-----
T ss_pred --------------------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEE-----
Confidence 0246899999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC--eEEEEEEc
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG--KKIKVERA 585 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g--~~i~V~~a 585 (773)
.|+++++..+|.++|+|||+|.+.++|.+|+..|||..|.| ++|+|.+|
T Consensus 118 ---~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 118 ---QKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp ---EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred ---EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 79999998889999999999999999999999999999987 99999986
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.95 E-value=1.6e-26 Score=224.44 Aligned_cols=164 Identities=27% Similarity=0.415 Sum_probs=148.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 294 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~ 294 (773)
+++|||+|||+++|+++|+++|+.||.|.. |++++++.+|.++|||||+|.+.++|..|++.||+..+.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIES--------CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 589999999999999999999999999998 999999977999999999999999999999999999999999
Q ss_pred EEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHH
Q psy2160 295 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 374 (773)
Q Consensus 295 I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~ 374 (773)
|+|.++.. ..
T Consensus 74 l~v~~~~~----------------------------------------------------------~~------------ 83 (167)
T 1fxl_A 74 IKVSYARP----------------------------------------------------------SS------------ 83 (167)
T ss_dssp CEEEECCC----------------------------------------------------------CC------------
T ss_pred EEEEecCC----------------------------------------------------------Cc------------
Confidence 99966431 00
Q ss_pred HHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHH
Q psy2160 375 QDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 454 (773)
Q Consensus 375 edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~ 454 (773)
.
T Consensus 84 ~------------------------------------------------------------------------------- 84 (167)
T 1fxl_A 84 A------------------------------------------------------------------------------- 84 (167)
T ss_dssp G-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCC
Q psy2160 455 WETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 534 (773)
Q Consensus 455 ~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~ 534 (773)
....++|||+|||.++|+++|+++|++||.|.
T Consensus 85 ------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~------ 116 (167)
T 1fxl_A 85 ------------------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRII------ 116 (167)
T ss_dssp ------------------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEE------
T ss_pred ------------------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEe------
Confidence 00135799999999999999999999999999
Q ss_pred ceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe--EEEEEEc
Q psy2160 535 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK--KIKVERA 585 (773)
Q Consensus 535 ~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~--~i~V~~a 585 (773)
.|+++.+..+|.++|+|||+|.+.++|.+|++.|||..|.|+ +|+|.+|
T Consensus 117 --~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 117 --TSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp --EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred --EEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 799999988899999999999999999999999999999996 4888876
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2e-26 Score=223.50 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=141.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++|||+|||.++|+++|+++|++||.|. +|+|+.++. |.++|||||+|.+.++|..|+..|||..+.|+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIA--------NIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEE--------EEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeE--------EEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 4899999999999999999999999999 799999986 7899999999999999999999999999999999
Q ss_pred EEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHH
Q psy2160 581 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 660 (773)
Q Consensus 581 ~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~e 660 (773)
.|.++..... ....+.++|+|.||+.. +++ +
T Consensus 72 ~v~~~~~~~~--------------------------------------~~~~~~~~l~v~nl~~~--~t~---------~ 102 (166)
T 3md3_A 72 KINWAFQSQQ--------------------------------------SSSDDTFNLFVGDLNVN--VDD---------E 102 (166)
T ss_dssp EEEECCCCCC--------------------------------------CCCTTCEEEEEESCCTT--CCH---------H
T ss_pred EEEEcCCCCC--------------------------------------CCCCCCceEEECCCCCC--CCH---------H
Confidence 9999873211 01224689999999765 443 8
Q ss_pred HHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEec
Q psy2160 661 DLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 719 (773)
Q Consensus 661 dl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~d 719 (773)
+|+++|++||.|..+.+.. +.++|+|||.|.++++|.+|+..|||..|+||+|.|.|..
T Consensus 103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 9999999999999998753 5678999999999999999999999999999999999854
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=1.4e-26 Score=225.28 Aligned_cols=160 Identities=23% Similarity=0.312 Sum_probs=143.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
++++|||+|||.++|+++|+++|+.||.|. +|+++.++.+|.++|||||+|.+.++|..|+..|||..+.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 73 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPIN--------TCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK 73 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc
Confidence 468999999999999999999999999998 799999988899999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
+|.|.++..... ....++|+|.||+.. +++
T Consensus 74 ~l~v~~~~~~~~----------------------------------------~~~~~~l~v~nl~~~--~t~-------- 103 (168)
T 1b7f_A 74 RLKVSYARPGGE----------------------------------------SIKDTNLYVTNLPRT--ITD-------- 103 (168)
T ss_dssp ECEEEECCCCSS----------------------------------------TTTTCEEEEESCCTT--CCH--------
T ss_pred EEEEEecCCCcc----------------------------------------cCCCCCEEEeCCCCC--CCH--------
Confidence 999999873210 123589999999765 443
Q ss_pred HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEE
Q psy2160 659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQ--RQITAET 717 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G--r~l~v~~ 717 (773)
++|+++|++||.|..|.+.. +.++|+|||.|.+.++|.+|+..|||+.|.| ++|.|.|
T Consensus 104 -~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 104 -DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp -HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred -HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 89999999999999998764 4557999999999999999999999999987 9999987
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=2.9e-26 Score=222.57 Aligned_cols=159 Identities=26% Similarity=0.336 Sum_probs=141.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. .|++++++.+|.++|||||+|.++++|..|+..|||..+.|++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 73 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIE--------SCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT 73 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCce
Confidence 58999999999999999999999999999 7999999988999999999999999999999999999999999
Q ss_pred EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160 580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 659 (773)
Q Consensus 580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ 659 (773)
|.|.++..... ....++|+|.||+.. ++ +
T Consensus 74 l~v~~~~~~~~----------------------------------------~~~~~~l~v~nl~~~--~t---------~ 102 (167)
T 1fxl_A 74 IKVSYARPSSA----------------------------------------SIRDANLYVSGLPKT--MT---------Q 102 (167)
T ss_dssp CEEEECCCCCG----------------------------------------GGTTCEEEEESCCTT--CC---------H
T ss_pred EEEEecCCCcc----------------------------------------cCCCCcEEECCCCCc--CC---------H
Confidence 99999873110 112478999999765 43 3
Q ss_pred HHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeE--EEEEE
Q psy2160 660 QDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ--ITAET 717 (773)
Q Consensus 660 edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~--l~v~~ 717 (773)
++|+++|++||.|..|.+.. +.++|+|||+|.+.++|.+|+..|||+.|+||. |.|.|
T Consensus 103 ~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 103 KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 89999999999999998754 446799999999999999999999999999976 77776
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.94 E-value=2.4e-26 Score=233.82 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=143.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|++|+.||+++|||||+|.+.++|.+||+.+|+..+.|+
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~ 85 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK 85 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEE--------EEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc
Confidence 5689999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|+|..+....... ......|+|+|| |..+.+
T Consensus 86 ~i~~~~~~~~~~~~--------------------------------------~~~~~~l~v~nl--~~~~t~-------- 117 (213)
T 4f02_A 86 PVRIMWSQRDPSLR--------------------------------------KSGVGNIFIKNL--DKSIDN-------- 117 (213)
T ss_dssp ECEEEECCCCTHHH--------------------------------------HHCTTEEEEESC--CTTCCH--------
T ss_pred cccccccccccccc--------------------------------------ccccccceECCc--ccccHH--------
Confidence 99998765211000 112457999999 334433
Q ss_pred HHHHHHHhhccCCEEEEEee--CCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCC
Q psy2160 374 QQDLREECSKCGHVKKVVLH--DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 435 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~--d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~ 435 (773)
++|+++|++||.|..|.+. .+.++|+|||+|.+.++|.+|+..|||..++|++|.|.++..
T Consensus 118 -~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 118 -KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp -HHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred -HHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 8999999999999999775 244689999999999999999999999999999999998754
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.8e-26 Score=232.77 Aligned_cols=178 Identities=24% Similarity=0.370 Sum_probs=151.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|+++..+|.++|||||.|.+.++|..||+.||+..|.|+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKS--------IDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 6799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|.|.++... ... .
T Consensus 99 ~l~v~~~~~~--------------------------------------------------------~~~---~------- 112 (216)
T 2qfj_A 99 NIKVGRPSNI--------------------------------------------------------GQA---Q------- 112 (216)
T ss_dssp CCEEECCSCC--------------------------------------------------------GGG---H-------
T ss_pred eEEEecCCCc--------------------------------------------------------ccc---c-------
Confidence 9999654310 000 0
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHH
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~ 453 (773)
..... ..
T Consensus 113 -~~~~~-----------------------------------~~------------------------------------- 119 (216)
T 2qfj_A 113 -PIIDQ-----------------------------------LA------------------------------------- 119 (216)
T ss_dssp -HHHHH-----------------------------------HH-------------------------------------
T ss_pred -hhhhh-----------------------------------hh-------------------------------------
Confidence 00000 00
Q ss_pred HHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCC
Q psy2160 454 KWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDT 533 (773)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~ 533 (773)
......++|||+|||.++|+++|+++|++||.|.
T Consensus 120 -----------------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~----- 153 (216)
T 2qfj_A 120 -----------------------------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIK----- 153 (216)
T ss_dssp -----------------------------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEE-----
T ss_pred -----------------------------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCee-----
Confidence 0012357999999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 534 NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 534 ~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
.|+|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+|..
T Consensus 154 ---~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 154 ---SATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp ---EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred ---EEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 799999988899999999999999999999999999999999999999984
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=7.6e-26 Score=229.62 Aligned_cols=176 Identities=18% Similarity=0.267 Sum_probs=145.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|+.||.|. .|+|+++..+|.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 98 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIK--------SIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR 98 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe
Confidence 468999999999999999999999999999 799999988899999999999999999999999999999999
Q ss_pred EEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHH
Q psy2160 579 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 658 (773)
Q Consensus 579 ~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l 658 (773)
.|.|.++..... ........... ....++|+|+||+.. ++
T Consensus 99 ~l~v~~~~~~~~-------------~~~~~~~~~~~----------------~~~~~~l~v~nlp~~--~t--------- 138 (216)
T 2qfj_A 99 NIKVGRPSNIGQ-------------AQPIIDQLAEE----------------ARAFNRIYVASVHQD--LS--------- 138 (216)
T ss_dssp CCEEECCSCCGG-------------GHHHHHHHHHH----------------HTTSCEEEEECCCTT--CC---------
T ss_pred eEEEecCCCccc-------------cchhhhhhhcc----------------cCCCcEEEEeCCCCc--CC---------
Confidence 999988763211 00001111000 123589999999765 44
Q ss_pred HHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 659 ~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
+++|+++|++||.|..|.|.. +.++|+|||.|.+.++|.+|+..|||..|+||.|.|.+...+.
T Consensus 139 ~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 139 DDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 389999999999999998864 4568999999999999999999999999999999999987654
No 14
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.94 E-value=8.3e-26 Score=225.73 Aligned_cols=173 Identities=17% Similarity=0.259 Sum_probs=142.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|+.. ++..|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLT--------DCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD 80 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC
Confidence 34578999999999999999999999999999 799999999999999999999999999999975 999999
Q ss_pred CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
|+.|.|.++....... + .......++|+|.||+.. +++
T Consensus 81 g~~l~v~~~~~~~~~~-----------~-----------------------~~~~~~~~~l~V~nLp~~--~t~------ 118 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQ-----------R-----------------------PGAHLTVKKIFVGGIKED--TEE------ 118 (196)
T ss_dssp TEECEEEECCC---------------------------------------------CCSEEEEECCTTT--CCH------
T ss_pred CEEeeeecccCccccc-----------c-----------------------cccCCCcceEEEeCCCCC--CCH------
Confidence 9999999987321100 0 001123589999999765 443
Q ss_pred HHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcccc
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRY 724 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~~~ 724 (773)
++|+++|++||.|..|.|.. +.++|+|||.|.++++|.+|+.. +|..|+||.|.|.+...+...
T Consensus 119 ---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 119 ---HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp ---HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred ---HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 89999999999999998763 55789999999999999999987 899999999999997766544
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.93 E-value=1.3e-25 Score=219.83 Aligned_cols=163 Identities=15% Similarity=0.247 Sum_probs=140.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCC--CCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg--~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..++|||+|||+++|+++|+++|++||.|. +|+|++++.+| .++|||||+|.+.++|..|+..|||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVY--------EINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 368999999999999999999999999999 89999999876 89999999999999999999999998876
Q ss_pred ---CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchh
Q psy2160 577 ---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT 653 (773)
Q Consensus 577 ---g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~ 653 (773)
++.|.+.++..... .....++|+|+||+.. +++
T Consensus 74 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~v~nl~~~--~t~--- 109 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKN---------------------------------------NAVEDRKLFIGMISKK--CTE--- 109 (175)
T ss_dssp TTCSSCCEEEECGGGCC---------------------------------------SCGGGSEEEEESCCTT--CCH---
T ss_pred cCCccceEEcccccccc---------------------------------------ccCCCCeEEEcCCCCc--CCH---
Confidence 67888887762210 0113578999999765 443
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHhCCceeC---CeEEEEEEec
Q psy2160 654 LILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG---QRQITAETWD 719 (773)
Q Consensus 654 ~~~~l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~---Gr~l~v~~~d 719 (773)
++|+++|++||.|..|.|.. +.++|+|||+|.++++|.+|+..|||..+. ||+|.|.|+|
T Consensus 110 ------~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 110 ------NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ------HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ------HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 89999999999999998764 456899999999999999999999998765 4999999865
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-25 Score=215.14 Aligned_cols=161 Identities=19% Similarity=0.239 Sum_probs=140.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
++|||+|||.++|+++|+++|++||.|.. |+|++++. |+++|||||+|.+.++|..|+..|||..+.|++|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i 71 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIAN--------IKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 71 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEE--------EEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCee
Confidence 48999999999999999999999999998 99999987 8999999999999999999999999999999999
Q ss_pred EEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHHHH
Q psy2160 296 KVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ 375 (773)
Q Consensus 296 ~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~e 375 (773)
.|.++...... .....++|+|+||+ ..+.+ +
T Consensus 72 ~v~~~~~~~~~--------------------------------------~~~~~~~l~v~nl~--~~~t~---------~ 102 (166)
T 3md3_A 72 KINWAFQSQQS--------------------------------------SSDDTFNLFVGDLN--VNVDD---------E 102 (166)
T ss_dssp EEEECCCCCCC--------------------------------------CCTTCEEEEEESCC--TTCCH---------H
T ss_pred EEEEcCCCCCC--------------------------------------CCCCCceEEECCCC--CCCCH---------H
Confidence 99887632110 12346789999993 33333 8
Q ss_pred HHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecC
Q psy2160 376 DLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434 (773)
Q Consensus 376 dL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~ 434 (773)
+|+++|+.||.|..+.+.. +.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++.
T Consensus 103 ~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 103 TLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred HHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 8999999999999997752 4578999999999999999999999999999999998753
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.93 E-value=7e-26 Score=220.32 Aligned_cols=160 Identities=21% Similarity=0.280 Sum_probs=140.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. +|+|++++.+|.++|||||+|.+.++|..|+.. +..+.|+.
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~ 72 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVT--------DLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKV 72 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEE--------EEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeE
Confidence 57999999999999999999999999999 899999998899999999999999999999974 67899999
Q ss_pred EEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHH
Q psy2160 580 IKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQ 659 (773)
Q Consensus 580 i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ 659 (773)
|.|.++... ... ...++|+|.||+.. +++
T Consensus 73 i~v~~~~~~-------------~~~---------------------------~~~~~l~V~nlp~~--~t~--------- 101 (167)
T 2cjk_A 73 IDPKRAIPR-------------DEQ---------------------------DKTGKIFVGGIGPD--VRP--------- 101 (167)
T ss_dssp CCCEECCCH-------------HHH---------------------------HHCEEEEEEEECTT--CCH---------
T ss_pred cccccccch-------------hhc---------------------------cCCCeEEECCCCCC--CCH---------
Confidence 999987621 000 01478999999765 443
Q ss_pred HHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 660 QDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 660 edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
++|+++|++||.|..|.|.. +.++|+|||.|.++++|.+|+. |||..|+||+|.|.+..++
T Consensus 102 ~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 102 KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 89999999999999998864 5678999999999999999998 8999999999999998765
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=7.8e-26 Score=222.00 Aligned_cols=165 Identities=19% Similarity=0.214 Sum_probs=139.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.+. . .++.+..+|.++|||||+|.+.++|..|+ .|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~--------~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKN--------D-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVF 79 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------T-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcc--------e-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 45679999999999999999999999999886 2 23334445889999999999999999999 59999999
Q ss_pred CeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHH
Q psy2160 577 GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLIL 656 (773)
Q Consensus 577 g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~ 656 (773)
|++|.|.++..... ......++|+|+||+.. +++
T Consensus 80 g~~l~v~~~~~~~~--------------------------------------~~~~~~~~l~v~nlp~~--~t~------ 113 (175)
T 1fje_B 80 GNEIKLEKPKGRDS--------------------------------------KKVRAARTLLAKNLSFN--ITE------ 113 (175)
T ss_dssp TEEEEEECCCCSSC--------------------------------------STTGGGGEEEEESCCSS--CCH------
T ss_pred CeEEEEecCCCccc--------------------------------------cccccCCEEEEeCCCCC--CCH------
Confidence 99999999873210 00123589999999765 443
Q ss_pred HHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 657 EYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 657 ~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
++|+++|++||.|..+ ...+.++|+|||.|.+.++|.+|+..|||..|+||+|.|.|..++
T Consensus 114 ---~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 114 ---DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ---HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ---HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8999999999999888 445788999999999999999999999999999999999998765
No 19
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.92 E-value=1.5e-24 Score=216.55 Aligned_cols=169 Identities=17% Similarity=0.252 Sum_probs=140.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|+.||.|.. |+|++++.||.++|||||+|.+.++|..||.. ++..|.|+
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTD--------CVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 7899999999999999999999999999998 99999998899999999999999999999985 99999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|.|.++....... . .......++|+|+|| |..+.+
T Consensus 83 ~l~v~~~~~~~~~~------~----------------------------~~~~~~~~~l~V~nL--p~~~t~-------- 118 (196)
T 1l3k_A 83 VVEPKRAVSREDSQ------R----------------------------PGAHLTVKKIFVGGI--KEDTEE-------- 118 (196)
T ss_dssp ECEEEECCC---------------------------------------------CCSEEEEECC--TTTCCH--------
T ss_pred EeeeecccCccccc------c----------------------------cccCCCcceEEEeCC--CCCCCH--------
Confidence 99998876321100 0 001234578999999 334433
Q ss_pred HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCc
Q psy2160 374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 437 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~ 437 (773)
++|+++|+.||.|..|.+.. +.++|+|||+|.+.++|.+|+.. +|..++|+.|.|.++..+.
T Consensus 119 -~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 119 -HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp -HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred -HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 88999999999999997762 45789999999999999999986 8999999999999876554
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=3.6e-24 Score=209.51 Aligned_cols=163 Identities=15% Similarity=0.245 Sum_probs=138.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCC--CcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg--~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++..+| +++|||||+|.+.++|..|++.|++..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYE--------INVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 5689999999999999999999999999998 9999999866 89999999999999999999999998875
Q ss_pred ---CeEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhH
Q psy2160 292 ---GKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT 368 (773)
Q Consensus 292 ---g~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~ 368 (773)
+++|.|..+..... .....++|+|+||+ ..+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~v~nl~--~~~t~--- 109 (175)
T 3nmr_A 74 PGMHHPIQMKPADSEKN---------------------------------------NAVEDRKLFIGMIS--KKCTE--- 109 (175)
T ss_dssp TTCSSCCEEEECGGGCC---------------------------------------SCGGGSEEEEESCC--TTCCH---
T ss_pred cCCccceEEcccccccc---------------------------------------ccCCCCeEEEcCCC--CcCCH---
Confidence 57888876652110 02236789999994 33332
Q ss_pred HHHHHHHHHHHHhhccCCEEEEEeeC---CCCCeEEEEEecCHHHHHHHHHHhCCcccC---CeeEEEEecC
Q psy2160 369 LILEYQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELLNGRWFG---QRQITAETWD 434 (773)
Q Consensus 369 ~~~ei~edL~e~f~k~G~V~~V~i~d---~~~~G~afV~F~~~e~A~~Ai~~lng~~~~---Gr~I~v~~~~ 434 (773)
++|+++|++||.|..|.+.. +.++|+|||+|.+.++|.+|+..|||..+. |++|.|.+++
T Consensus 110 ------~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 110 ------NDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp ------HHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred ------HHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 88999999999999998763 346899999999999999999999998765 4999998753
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.92 E-value=6.1e-24 Score=225.17 Aligned_cols=199 Identities=16% Similarity=0.243 Sum_probs=143.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
....++|||+|||.++|+++|+ ++|+.||.|. .|+|++ +|.++|||||+|.+.++|..|+..|||
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~--------~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeE--------EEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 3467999999999999999966 9999999998 788876 478999999999999999999999999
Q ss_pred ceecCeEEEEEEccccccC-----CcCCCCCCchhhhHHHHHHHHHHhhhcc--CCC------Ccc--------------
Q psy2160 573 YEIRGKKIKVERAKFTMKG-----EAYDPKLKPKKKRKKDLEKLKKAQEKLF--DWR------PDK-------------- 625 (773)
Q Consensus 573 ~~i~g~~i~V~~a~~~~~~-----~~~~~~~~~~~~k~~~~~~~~~~~~~~~--~~~------~~~-------------- 625 (773)
..|.|+.|+|.+++..... ............+............... ... ...
T Consensus 75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 9999999999999743210 0000000000000000000000000000 000 000
Q ss_pred --------------------------------------------ccCCCCCCCcEEEEecCCCccccccchhhHHHHHHH
Q psy2160 626 --------------------------------------------MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQD 661 (773)
Q Consensus 626 --------------------------------------------~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~ed 661 (773)
.......+.++|+|.||+.. ++ +++
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~---------~~~ 223 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEE--TN---------ELM 223 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCc--CC---------HHH
Confidence 00011234689999999754 44 389
Q ss_pred HHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEe
Q psy2160 662 LREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW 718 (773)
Q Consensus 662 l~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~ 718 (773)
|+++|++||.|..|.|..+. +|+|||+|.+.++|.+|+..|||..|+ ||.|+|.|.
T Consensus 224 l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 224 LSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred HHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 99999999999999887644 699999999999999999999999999 999999985
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.91 E-value=6.4e-24 Score=214.42 Aligned_cols=181 Identities=15% Similarity=0.109 Sum_probs=134.4
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLP-LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp-~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
++++|||+||| ..+|+++|+++|+.||.|. +|+|+++ ++|||||+|.+.++|..||+.|||..|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~--------~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g 69 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE--------KVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFG 69 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEE--------EEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeE--------EEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 57899999999 7999999999999999999 7999865 37999999999999999999999999999
Q ss_pred eEEEEEEccccccCCcC---CCCCCchhhhHHHHHHHHHHhhhccCCCCc--cccCCCCCCCcEEEEecCCCccccccch
Q psy2160 578 KKIKVERAKFTMKGEAY---DPKLKPKKKRKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDV 652 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~---~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ikNl~~~~~~~~d~ 652 (773)
++|+|.+++........ .+...+..+.. ...+....... ........+.++|+|+||+.. +++
T Consensus 70 ~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~--------~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~--~t~-- 137 (205)
T 3tyt_A 70 QKMNVCVSKQPAIMPGQSYGLEDGSCSYKDF--------SESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLE--VTE-- 137 (205)
T ss_dssp EECEEEECSCSCCCCCSCCBCTTSCBSEEEC--------TTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTT--CCH--
T ss_pred ceEEEEEccCCccCCCcccccccCCcccccc--------CCCccccccCcccccccccCCCcceEEEeCCCCC--CCH--
Confidence 99999999743211000 00000000000 00000000000 000011245689999999765 443
Q ss_pred hhHHHHHHHHHHHHhcCCce--eEEEecCC--CCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160 653 TLILEYQQDLREECSKCGHV--KKVVLHDK--HPEGVAQIFFKEPEAADACRELLNGRWFGQR 711 (773)
Q Consensus 653 ~~~~~l~edl~~~f~~fG~V--~~v~i~~~--~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr 711 (773)
++|+++|++||.| .+|.++.. .+.|+|||+|.+.++|.+||..|||..|+|+
T Consensus 138 -------~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 138 -------ENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp -------HHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred -------HHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 8999999999999 88988763 4569999999999999999999999999887
No 23
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=1.4e-24 Score=211.12 Aligned_cols=161 Identities=22% Similarity=0.273 Sum_probs=138.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|++++.||.++|||||.|.+.++|..||.. +..+.|+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~ 71 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTD--------LKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK 71 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEE--------EECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe
Confidence 4689999999999999999999999999998 99999988899999999999999999999984 6789999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
.|.|.++..... ....++|+|+||+ ..+.+
T Consensus 72 ~i~v~~~~~~~~----------------------------------------~~~~~~l~V~nlp--~~~t~-------- 101 (167)
T 2cjk_A 72 VIDPKRAIPRDE----------------------------------------QDKTGKIFVGGIG--PDVRP-------- 101 (167)
T ss_dssp ECCCEECCCHHH----------------------------------------HHHCEEEEEEEEC--TTCCH--------
T ss_pred Ecccccccchhh----------------------------------------ccCCCeEEECCCC--CCCCH--------
Confidence 999977642100 0125689999994 33332
Q ss_pred HHHHHHHhhccCCEEEEEeeC----CCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160 374 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 436 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d----~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~ 436 (773)
++|+++|++||.|..|.+.. +.++|+|||+|.+.++|.+|+. ++|..++|++|.|.++.++
T Consensus 102 -~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 102 -KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp -HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred -HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 88999999999999998763 4578999999999999999998 8999999999999987654
No 24
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=6.1e-24 Score=207.60 Aligned_cols=154 Identities=18% Similarity=0.321 Sum_probs=130.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHH
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL 567 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai 567 (773)
..++|||+|||.++|+++|+++|++| | .|. ++++ +.++|||||+|.++++|..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~--------~~~~------~~~~g~afV~f~~~~~A~~A~ 68 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--------AVQI------NQDKNFAFLEFRSVDETTQAM 68 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--------EEEE------ETTTTEEEEEESSHHHHHHHG
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCcee--------eeEe------cCCCCEEEEEeCCHHHHHHHH
Confidence 35899999999999999999999999 5 333 3444 345899999999999999999
Q ss_pred HHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccc
Q psy2160 568 SILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPAL 647 (773)
Q Consensus 568 ~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~ 647 (773)
.|||..+.|++|.|.++..... ....++|+|+||+..
T Consensus 69 -~~~~~~~~g~~i~v~~~~~~~~----------------------------------------~~~~~~l~v~nlp~~-- 105 (172)
T 2g4b_A 69 -AFDGIIFQGQSLKIRRPHDYQP----------------------------------------LPGAHKLFIGGLPNY-- 105 (172)
T ss_dssp -GGTTCEETTEECEEECCSSCCC----------------------------------------CTTTTCEEEECCCTT--
T ss_pred -HhCCcEecCceeeecCCcccCC----------------------------------------CCCCCEEEEEcCCCc--
Confidence 8999999999999998762110 112578999999765
Q ss_pred cccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEe
Q psy2160 648 FDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETW 718 (773)
Q Consensus 648 ~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~ 718 (773)
+++ ++|+++|++||.|..|.+.. +.++|+|||.|.++++|.+|+..|||..|+||+|.|.+.
T Consensus 106 ~t~---------~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 106 LND---------DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp CCH---------HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCH---------HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 443 89999999999999998854 455799999999999999999999999999999999874
No 25
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.91 E-value=2.4e-24 Score=211.30 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=137.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.+.. +.+ ++..+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~--------~~~-~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 81 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKND--------LAV-VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 81 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHT--------CCC-CEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcce--------EEE-EECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCe
Confidence 7899999999999999999999999998875 233 333458999999999999999999996 999999999
Q ss_pred EEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCccCCCCCCCCcEEEEecCCCccccchhhHHHHHH
Q psy2160 294 KIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEY 373 (773)
Q Consensus 294 ~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei 373 (773)
+|+|.++...... .....++|+|+||+ ..+.+
T Consensus 82 ~l~v~~~~~~~~~--------------------------------------~~~~~~~l~v~nlp--~~~t~-------- 113 (175)
T 1fje_B 82 EIKLEKPKGRDSK--------------------------------------KVRAARTLLAKNLS--FNITE-------- 113 (175)
T ss_dssp EEEEECCCCSSCS--------------------------------------TTGGGGEEEEESCC--SSCCH--------
T ss_pred EEEEecCCCcccc--------------------------------------ccccCCEEEEeCCC--CCCCH--------
Confidence 9999887632100 02346799999994 33332
Q ss_pred HHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCC
Q psy2160 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGK 436 (773)
Q Consensus 374 ~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~ 436 (773)
++|+++|+.||.|..+ ...+.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++.++
T Consensus 114 -~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 114 -DELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp -HHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred -HHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 8899999999999888 445678999999999999999999999999999999999987654
No 26
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.91 E-value=1.8e-23 Score=209.15 Aligned_cols=186 Identities=15% Similarity=0.213 Sum_probs=138.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccC-C--CceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVD-T--NQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~-~--~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
..++|||+|||.++|+++|+++|+.||.|..... . ...++.+ +.++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 4689999999999999999999999954331000 0 0002333 456899999999999999999 8999999
Q ss_pred cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160 576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLI 655 (773)
Q Consensus 576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~ 655 (773)
.|++|.|.++............. ....+...........++|+|.||+.. ++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~------ 127 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENP--------------------SVYVPGVVSTVVPDSAHKLFIGGLPNY--LN------ 127 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCS--------------------SCCCTTSSCCCSSCCCCEEEEECCCTT--CC------
T ss_pred cCceEEEeCCCCCCCCCCCcCCC--------------------cCCCCCCccCCCCCCCCEEEEeCCCCC--CC------
Confidence 99999999987432111000000 000001111122345789999999765 44
Q ss_pred HHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecCcc
Q psy2160 656 LEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKT 722 (773)
Q Consensus 656 ~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk~ 722 (773)
+++|+++|++||.|..|.+.. +.++|+|||.|.++++|.+|+..|||..|+||.|.|.+...+.
T Consensus 128 ---~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 128 ---DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp ---HHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ---HHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 389999999999999998764 4568999999999999999999999999999999999977654
No 27
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=1.3e-23 Score=216.00 Aligned_cols=192 Identities=19% Similarity=0.212 Sum_probs=143.8
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
...+++|||+|||. ++|+++|+++|+.||.|. .|+|+++. +|||||+|.+.++|.+|++.|||..|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~--------~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~ 97 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL 97 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEE--------EEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 45679999999999 999999999999999998 79999875 78999999999999999999999999
Q ss_pred cCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCC--ccccCCCCCCCcEEEEecCCCccccccchh
Q psy2160 576 RGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRP--DKMRGERSKNESVIIVKNLFDPALFDKDVT 653 (773)
Q Consensus 576 ~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~ 653 (773)
.|+.|.|.++..................+. ........... .........+.++|+|.||+.. ++
T Consensus 98 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~--~t---- 164 (229)
T 2adc_A 98 HGKPIRITLSKHQNVQLPREGQEDQGLTKD-------YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS--VS---- 164 (229)
T ss_dssp SSSBCEEECCSCCCCCCCCSSSSTTTTEEE-------CTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTT--CC----
T ss_pred CCeEEEEEEecCccccCccccccccccccc-------cccCcccccCCccccccccCCCCCCEEEEeCCCcc--CC----
Confidence 999999999974321000000000000000 00000000000 0000112345799999999765 44
Q ss_pred hHHHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEecC
Q psy2160 654 LILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWDG 720 (773)
Q Consensus 654 ~~~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~dg 720 (773)
+++|+++|++|| .|..|.|... .+|+|||+|.+.++|.+|+..|||..|+ ||+|.|.|...
T Consensus 165 -----~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 165 -----EEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp -----HHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred -----HHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 389999999999 9999988552 3699999999999999999999999999 99999999654
No 28
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.91 E-value=2.3e-23 Score=203.48 Aligned_cols=159 Identities=21% Similarity=0.323 Sum_probs=138.6
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhcc----C-------CEEEEEeeCCCCCeEEEEEecCHHHHHHHHH
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC----G-------HVKKVVLHDKHPEGVAQIFFKEPEAADACRE 416 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~----G-------~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~ 416 (773)
.+++|+|+|| |..+.+ ++|+++|+.| | .|..+.+. .++|+|||.|.+.++|.+|+
T Consensus 3 ~~~~l~V~nL--p~~~t~---------~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~--~~~g~afV~f~~~~~A~~A~- 68 (172)
T 2g4b_A 3 SARRLYVGNI--PFGITE---------EAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM- 68 (172)
T ss_dssp GGGEEEEESC--CTTCCH---------HHHHHHHHHHHHHTTCCSSSSCSEEEEEEE--TTTTEEEEEESSHHHHHHHG-
T ss_pred cccEEEEcCC--CcccCH---------HHHHHHHHHHhhhcccccCCCCceeeeEec--CCCCEEEEEeCCHHHHHHHH-
Confidence 4689999999 344443 8899999999 7 77777665 35899999999999999999
Q ss_pred HhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhc
Q psy2160 417 LLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 496 (773)
Q Consensus 417 ~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~ 496 (773)
.|||..+.|+.|.+.+..... .
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~----------------------------------------------------------~ 90 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQ----------------------------------------------------------P 90 (172)
T ss_dssp GGTTCEETTEECEEECCSSCC----------------------------------------------------------C
T ss_pred HhCCcEecCceeeecCCcccC----------------------------------------------------------C
Confidence 799999999999997643211 1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+++.++.+|.++|+|||+|.+.++|.+|+..|||..|.
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE--------EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 12368999999999999999999999999998 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|.|.+|.
T Consensus 163 g~~l~V~~As 172 (172)
T 2g4b_A 163 DKKLLVQRAS 172 (172)
T ss_dssp TEECEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999873
No 29
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=5.6e-24 Score=213.27 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=142.4
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+++|||+|||. ++|+++|+++|+.||.|. .|+|+.+. +|||||+|.+.++|..|+..|||..|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~--------~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQ--------RVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCS--------EEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 368999999999 999999999999999998 79998774 7899999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCc--cccCCCCCCCcEEEEecCCCccccccchhhH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDVTLI 655 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~ 655 (773)
+.|.|.++..................+. . ........... ........+.++|+|.||+.. ++
T Consensus 69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~--~~------ 133 (198)
T 1qm9_A 69 KPIRITLSKHQNVQLPREGQEDQGLTKD-----Y--GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPS--VS------ 133 (198)
T ss_dssp CCCEEEECCCCSCCCSSSSSSSSSCEEE-----S--SCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTT--CC------
T ss_pred eEEEEEEecCCCcCCCCcCCcccccccc-----c--cCCchhhccCccccccccCCCCccEEEEeCCCCC--CC------
Confidence 9999999975421100000000000000 0 00000000000 000112345799999999765 44
Q ss_pred HHHHHHHHHHHhcCC-ceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeC-CeEEEEEEecC
Q psy2160 656 LEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWDG 720 (773)
Q Consensus 656 ~~l~edl~~~f~~fG-~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~-Gr~l~v~~~dg 720 (773)
+++|+++|++|| .|..|.|.+. .+|+|||+|.+.++|.+|+..|||..|+ ||+|.|.|...
T Consensus 134 ---~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 134 ---EEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---HHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---HHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 389999999999 9999988653 3799999999999999999999999999 99999999654
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.89 E-value=2.1e-22 Score=213.32 Aligned_cols=197 Identities=18% Similarity=0.245 Sum_probs=141.6
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
.+++|||+|||.++|+++|+ ++|++||.|.. |+|.+ +|+++|||||+|.+.++|..||+.|||..
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~--------v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE--------EEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 68999999999999999976 89999999998 88876 48999999999999999999999999999
Q ss_pred ecCeEEEEEeecccccCCC-CCCCCchh-hhhHHHHHHHH-HH-Hhhhcc---CCC------Cc----------------
Q psy2160 290 IRGKKIKVERAKFTMKGEA-YDPKLKPK-KKRKKDLEKLK-KA-QEKLFD---WRP------DK---------------- 340 (773)
Q Consensus 290 l~g~~I~V~~A~~~~k~~~-~~p~~~~~-~~~~k~~~~~~-k~-~~k~~~---~~~------~~---------------- 340 (773)
|.|++|+|.++........ .......+ +.......... .. ...... ..+ ..
T Consensus 77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 9999999999874321100 00000000 00000000000 00 000000 000 00
Q ss_pred ------------------------------------------cCCCCCCCCcEEEEecCCCccccchhhHHHHHHHHHHH
Q psy2160 341 ------------------------------------------MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLR 378 (773)
Q Consensus 341 ------------------------------------------~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~ 378 (773)
.........++|+|+||+ ..+.+ ++|+
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~~---------~~l~ 225 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLP--EETNE---------LMLS 225 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCC--CcCCH---------HHHH
Confidence 000012245789999993 33332 8999
Q ss_pred HHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEec
Q psy2160 379 EECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETW 433 (773)
Q Consensus 379 e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~ 433 (773)
++|++||.|..|.+.... +|+|||+|.+.++|.+|+..|||..|. |+.|.|.+.
T Consensus 226 ~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 226 MLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred HHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 999999999999888543 699999999999999999999999999 999999875
No 31
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.89 E-value=1.7e-22 Score=202.03 Aligned_cols=180 Identities=20% Similarity=0.294 Sum_probs=142.2
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhcc----C-------CEEEEEeeCCCCCeEEEEEecCHHHHHHHHH
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC----G-------HVKKVVLHDKHPEGVAQIFFKEPEAADACRE 416 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~----G-------~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~ 416 (773)
.+++|+|+|| |..+.+ ++|+++|+.| | .|..+.+. .++|+|||.|.+.++|.+|+
T Consensus 3 ~~~~l~V~nL--p~~~te---------~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al- 68 (198)
T 2yh0_A 3 MARRLYVGNI--PFGITE---------EAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM- 68 (198)
T ss_dssp -CCEEEEESC--CTTCCH---------HHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-
T ss_pred ceeEEEEcCC--CCCCCH---------HHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-
Confidence 3689999999 344443 8899999999 5 67766654 45899999999999999999
Q ss_pred HhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhc
Q psy2160 417 LLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKK 496 (773)
Q Consensus 417 ~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~ 496 (773)
.|||..+.|+.|.|.+.......... ...... ..|... ....
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~----------------------~~~~~~------~~~~~~----------~~~~ 110 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGM----------------------SENPSV------YVPGVV----------STVV 110 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCS----------------------SSCSSC------CCTTSS----------CCCS
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCC----------------------cCCCcC------CCCCCc----------cCCC
Confidence 79999999999999876533210000 000000 000000 0012
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+++.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK--------AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE--------EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34679999999999999999999999999998 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|..
T Consensus 183 g~~l~v~~a~~ 193 (198)
T 2yh0_A 183 DKKLLVQRASV 193 (198)
T ss_dssp TEECEEEESCC
T ss_pred CEEEEEEECCC
Confidence 99999999984
No 32
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=1.8e-22 Score=203.82 Aligned_cols=196 Identities=16% Similarity=0.238 Sum_probs=139.1
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCee
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQ 427 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~ 427 (773)
.+++|+|+||. |..+++ ++|+++|+.||.|.+|.+... .+|+|||+|.+.++|..|+..|||..+.|++
T Consensus 3 ~~~~l~V~nL~-~~~~~~---------~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 3 DSPVLMVYGLD-QSKMNC---------DRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp CCSEEEEECCC-TTTCCH---------HHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCC-cccCCH---------HHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 36799999993 234443 789999999999999988754 4899999999999999999999999999999
Q ss_pred EEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcC
Q psy2160 428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSN 507 (773)
Q Consensus 428 I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~n 507 (773)
|.|.+........... .. +... ......+ .+.. ...+.... .........+.++|||+|
T Consensus 72 l~v~~s~~~~~~p~~~-----------~~--~~~~-~~~~~~~--~~~~-~~r~~~~~----~~~~~~~~~p~~~l~v~N 130 (205)
T 3tyt_A 72 MNVCVSKQPAIMPGQS-----------YG--LEDG-SCSYKDF--SESR-NNRFSTPE----QAAKNRIQHPSNVLHFFN 130 (205)
T ss_dssp CEEEECSCSCCCCCSC-----------CB--CTTS-CBSEEEC--TTCT-TCSCSSHH----HHTTSCCCCCCSEEEEEE
T ss_pred EEEEEccCCccCCCcc-----------cc--cccC-Ccccccc--CCCc-cccccCcc----cccccccCCCcceEEEeC
Confidence 9999865332100000 00 0000 0000000 0000 00000000 000001124568999999
Q ss_pred CCCCCCHHHHHHHHHhcCcc--eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe----EEE
Q psy2160 508 LPLDLTQEEFVEVMQKCGLV--MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK----KIK 581 (773)
Q Consensus 508 Lp~~~t~e~L~~~F~~~G~I--~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~----~i~ 581 (773)
||.++|+++|+++|+.||.| . +|+++.+. |.++|+|||+|.+.++|..||..|||..|.|+ ++.
T Consensus 131 Lp~~~t~~~L~~~F~~~G~v~~~--------~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 131 APLEVTEENFFEICDELGVKRPT--------SVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp ECTTCCHHHHHHHHHHHTCCCCS--------EEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCCCCCHHHHHHHHHhcCCcceE--------EEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 99999999999999999998 6 78998876 55679999999999999999999999999875 677
Q ss_pred EEEc
Q psy2160 582 VERA 585 (773)
Q Consensus 582 V~~a 585 (773)
|.+|
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=9.6e-23 Score=213.78 Aligned_cols=154 Identities=21% Similarity=0.328 Sum_probs=135.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .|+|.+ ++|||||+|.+.++|..|+..|||..|.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPS--------EVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 4568999999999999999999999999998 788854 37999999999999999999999999999
Q ss_pred eEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhhhccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHH
Q psy2160 578 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILE 657 (773)
Q Consensus 578 ~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~ 657 (773)
+.|.|.++.. .++|+|.||+.. +++
T Consensus 86 ~~l~v~~a~~----------------------------------------------~~~l~v~nl~~~--~t~------- 110 (261)
T 3sde_A 86 RPLRIRFATH----------------------------------------------GAALTVKNLSPV--VSN------- 110 (261)
T ss_dssp EECEEEECCC----------------------------------------------SSEEEEESCCTT--CCH-------
T ss_pred ceeEeeeccc----------------------------------------------CCcccccCCCCC--CCH-------
Confidence 9999999871 368999999765 443
Q ss_pred HHHHHHHHHhcCCceeEEEecC---CCCCcEEEEEecCHHHHHHHHHHh-CCceeC---CeEEEEEEecCcc
Q psy2160 658 YQQDLREECSKCGHVKKVVLHD---KHPEGVAQIFFKEPEAADACRELL-NGRWFG---QRQITAETWDGKT 722 (773)
Q Consensus 658 l~edl~~~f~~fG~V~~v~i~~---~~~~G~afV~F~~~e~A~~Ai~~l-nGr~f~---Gr~l~v~~~dgk~ 722 (773)
++|+++|++||.|..|.|.. +.+.|+|||.|.+.++|.+|+..| +|.++. ||+|.|.+.+...
T Consensus 111 --~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 111 --ELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp --HHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred --HHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 89999999999999997753 556899999999999999999999 556665 9999999987654
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.88 E-value=4.6e-22 Score=204.44 Aligned_cols=188 Identities=21% Similarity=0.234 Sum_probs=140.1
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||. ++|+++|+++|++||.|.. |+|+++. +|||||+|.+.++|.+||+.||+..|.|
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~--------v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEE--------EEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 789999999999 9999999999999999998 9998765 6899999999999999999999999999
Q ss_pred eEEEEEeecccccCCCCCCCCchhhh-hHHHHHHHHHHHhhhccCCCC--ccCCCCCCCCcEEEEecCCCccccchhhHH
Q psy2160 293 KKIKVERAKFTMKGEAYDPKLKPKKK-RKKDLEKLKKAQEKLFDWRPD--KMRGERSKNESVIIVKNLFDPALFDKDVTL 369 (773)
Q Consensus 293 ~~I~V~~A~~~~k~~~~~p~~~~~~~-~~k~~~~~~k~~~k~~~~~~~--~~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~ 369 (773)
++|.|.++....... +....... ..+. ............ .........+++|+|+||+ ..+.+
T Consensus 100 ~~l~v~~a~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp--~~~t~---- 165 (229)
T 2adc_A 100 KPIRITLSKHQNVQL---PREGQEDQGLTKD-----YGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP--PSVSE---- 165 (229)
T ss_dssp SBCEEECCSCCCCCC---CCSSSSTTTTEEE-----CTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCC--TTCCH----
T ss_pred eEEEEEEecCccccC---ccccccccccccc-----cccCcccccCCccccccccCCCCCCEEEEeCCC--ccCCH----
Confidence 999999887432111 00000000 0000 000000000000 0000112346899999993 33332
Q ss_pred HHHHHHHHHHHhhccC-CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEecC
Q psy2160 370 ILEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD 434 (773)
Q Consensus 370 ~~ei~edL~e~f~k~G-~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~~ 434 (773)
++|+++|+.|| .|..|.+... .+|+|||+|.+.++|.+|+..|||..++ |+.|.|.+..
T Consensus 166 -----~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 166 -----EDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp -----HHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred -----HHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 89999999999 9999988543 4799999999999999999999999999 9999998864
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.88 E-value=2.3e-22 Score=201.48 Aligned_cols=189 Identities=19% Similarity=0.196 Sum_probs=139.4
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||. ++|+++|+++|++||.|.. |+|+++. +|||||+|.+.++|..|+..|||..|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~--------v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g 68 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQR--------VKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHG 68 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSE--------EECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecC
Confidence 368999999999 9999999999999999998 9998764 6899999999999999999999999999
Q ss_pred eEEEEEeecccccCCCCCCCCchhhhhHHHHHHHHHHHhhhccCCCCc--cCCCCCCCCcEEEEecCCCccccchhhHHH
Q psy2160 293 KKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDK--MRGERSKNESVIIVKNLFDPALFDKDVTLI 370 (773)
Q Consensus 293 ~~I~V~~A~~~~k~~~~~p~~~~~~~~~k~~~~~~k~~~k~~~~~~~~--~~~~~~~~~~~v~l~Nl~~p~~~~~d~~~~ 370 (773)
++|+|.++..................+.. .........+.. ........+++|+|+||+ ..+.+
T Consensus 69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~~----- 134 (198)
T 1qm9_A 69 KPIRITLSKHQNVQLPREGQEDQGLTKDY-------GNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP--PSVSE----- 134 (198)
T ss_dssp CCCEEEECCCCSCCCSSSSSSSSSCEEES-------SCCCTTSSSSCCCCCCSCCCCCCCEEEECCCC--TTCCH-----
T ss_pred eEEEEEEecCCCcCCCCcCCccccccccc-------cCCchhhccCccccccccCCCCccEEEEeCCC--CCCCH-----
Confidence 99999998743211100000000000000 000000000000 000112347899999994 33332
Q ss_pred HHHHHHHHHHhhccC-CEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccC-CeeEEEEecC
Q psy2160 371 LEYQQDLREECSKCG-HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG-QRQITAETWD 434 (773)
Q Consensus 371 ~ei~edL~e~f~k~G-~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~-Gr~I~v~~~~ 434 (773)
++|+++|++|| .|..|.+... .+|+|||+|.+.++|.+|+..|||..++ |++|.|.+..
T Consensus 135 ----~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 135 ----EDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp ----HHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred ----HHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 88999999999 9999988643 3899999999999999999999999999 9999998864
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.87 E-value=2.2e-21 Score=203.38 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=138.1
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ 425 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G 425 (773)
....++|||+||+ ..+.+ ++|+++|+.||.|..|.+.. ++|+|||.|.+.++|.+|+..|||..+.|
T Consensus 19 ~~~~~~l~V~nLp--~~~te---------~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 19 YTQRCRLFVGNLP--TDITE---------EDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp SCGGGEEEEESCC--TTCCH---------HHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEECCC--CCCCH---------HHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 3556799999993 33433 89999999999999998863 48999999999999999999999999999
Q ss_pred eeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhcccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEE
Q psy2160 426 RQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYV 505 (773)
Q Consensus 426 r~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V 505 (773)
+.|.|.+.. ..++|||
T Consensus 86 ~~l~v~~a~----------------------------------------------------------------~~~~l~v 101 (261)
T 3sde_A 86 RPLRIRFAT----------------------------------------------------------------HGAALTV 101 (261)
T ss_dssp EECEEEECC----------------------------------------------------------------CSSEEEE
T ss_pred ceeEeeecc----------------------------------------------------------------cCCcccc
Confidence 999997632 3579999
Q ss_pred cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC-Cceec---CeEEE
Q psy2160 506 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD-GYEIR---GKKIK 581 (773)
Q Consensus 506 ~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln-g~~i~---g~~i~ 581 (773)
+|||..+|+++|+++|+.||.|. .|.|+.+. +|.++|||||+|.+.++|..|+..|| |..+. |++|.
T Consensus 102 ~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 102 KNLSPVVSNELLEQAFSQFGPVE--------KAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cCCCCCCCHHHHHHHHHhcCCeE--------EEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEE
Confidence 99999999999999999999999 79999995 69999999999999999999999995 44444 89999
Q ss_pred EEEcccc
Q psy2160 582 VERAKFT 588 (773)
Q Consensus 582 V~~a~~~ 588 (773)
|.++...
T Consensus 173 v~~~~~~ 179 (261)
T 3sde_A 173 VEPMEQF 179 (261)
T ss_dssp EEECCCE
T ss_pred Eeecccc
Confidence 9998743
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=152.51 Aligned_cols=81 Identities=27% Similarity=0.430 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
++|+|||+|||.++|+++|+++|++||.|.. |+|++|+.||.++|||||+|.+.++|..||+.|||..|.|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVES--------AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------eEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 6799999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|++
T Consensus 90 ~l~V~~AkP 98 (99)
T 4fxv_A 90 TIKVSYARP 98 (99)
T ss_dssp ECEEEECCB
T ss_pred EEEEEEeeC
Confidence 999999864
No 38
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=4.2e-18 Score=164.36 Aligned_cols=146 Identities=18% Similarity=0.231 Sum_probs=110.2
Q ss_pred EEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhh
Q psy2160 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAK 469 (773)
Q Consensus 390 V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~ 469 (773)
+.+....+.|++||.|.+.++|.+|+..+++....+..+.+.........
T Consensus 5 l~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 54 (158)
T 2kn4_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTV------------------------------ 54 (158)
T ss_dssp EEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEE------------------------------
T ss_pred EEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccc------------------------------
Confidence 33444567999999999999999999988865433333333211000000
Q ss_pred cccCCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCC
Q psy2160 470 FTMKGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 549 (773)
Q Consensus 470 ~~~~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~ 549 (773)
... ..... ........++|||+|||.++|+++|+++|+.||.|. .|+|+.|+.+|.+
T Consensus 55 -~~~--~~~~~------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~--------~~~i~~~~~~g~~ 111 (158)
T 2kn4_A 55 -TEG--SHHHH------------HHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKES 111 (158)
T ss_dssp -ECC--CCCSS------------CCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEECCCCSSCTTS
T ss_pred -ccc--ccccc------------cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCCcc
Confidence 000 00000 001123568999999999999999999999999998 7999999888999
Q ss_pred cceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEcccc
Q psy2160 550 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFT 588 (773)
Q Consensus 550 kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~ 588 (773)
+|||||+|.+.++|..||..|||..|.|++|+|.+|...
T Consensus 112 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 112 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999999999999843
No 39
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.74 E-value=6.6e-18 Score=153.30 Aligned_cols=88 Identities=27% Similarity=0.384 Sum_probs=82.3
Q ss_pred CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR 711 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr 711 (773)
.++++|+|+||+++.++ .|+.++.+|++||+++|++||.|.+|.|.+..++|+|||+|.+.++|.+|+..|||++|+||
T Consensus 5 ~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46899999999999875 57889999999999999999999999998877899999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy2160 712 QITAETWDG 720 (773)
Q Consensus 712 ~l~v~~~dg 720 (773)
.|.|.|++.
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999863
No 40
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.73 E-value=1.8e-17 Score=148.55 Aligned_cols=89 Identities=25% Similarity=0.305 Sum_probs=80.4
Q ss_pred CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCC------CCCcEEEEEecCHHHHHHHHHHhCC
Q psy2160 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK------HPEGVAQIFFKEPEAADACRELLNG 705 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~------~~~G~afV~F~~~e~A~~Ai~~lnG 705 (773)
.++++|+|+||+++.++.+|. .+.+|++||+++|++||.|.+|.|+.. .+.|+|||+|.++++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~-~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDE-EYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHH-HHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChH-HHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 467999999999998887554 579999999999999999999999753 4689999999999999999999999
Q ss_pred ceeCCeEEEEEEecCc
Q psy2160 706 RWFGQRQITAETWDGK 721 (773)
Q Consensus 706 r~f~Gr~l~v~~~dgk 721 (773)
++|+||+|.|.||+..
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998853
No 41
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=147.99 Aligned_cols=80 Identities=28% Similarity=0.451 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|++||.|. +|+|++|+.+|.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVE--------SAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 468999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred EEEEEEcc
Q psy2160 579 KIKVERAK 586 (773)
Q Consensus 579 ~i~V~~a~ 586 (773)
+|+|.+|+
T Consensus 90 ~l~V~~Ak 97 (99)
T 4fxv_A 90 TIKVSYAR 97 (99)
T ss_dssp ECEEEECC
T ss_pred EEEEEEee
Confidence 99999997
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=2.9e-17 Score=149.87 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=73.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++. +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILS--------CKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEE--------EEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 5689999999999999999999999999998 9999986 45899999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.++..
T Consensus 74 ~i~V~~a~~ 82 (115)
T 4f25_A 74 KVFVGRFKS 82 (115)
T ss_dssp ECEEEESSC
T ss_pred EEEEEECCC
Confidence 999998763
No 43
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=147.50 Aligned_cols=98 Identities=49% Similarity=0.972 Sum_probs=91.6
Q ss_pred CCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ 710 (773)
Q Consensus 631 ~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G 710 (773)
..++++|+|+||+.+.++..++.++.+++++|+++|++||.|.+|.|.+.+++|+|||.|.+.++|.+|+..|||+.|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45689999999999988888999999999999999999999999988888899999999999999999999999999999
Q ss_pred eEEEEEEecCcccccccc
Q psy2160 711 RQITAETWDGKTRYKIQE 728 (773)
Q Consensus 711 r~l~v~~~dgk~~~~~~~ 728 (773)
|+|.|.+++++++|....
T Consensus 92 r~l~v~~a~~~~~~~~~~ 109 (112)
T 2dit_A 92 RQITAQAWDGTTDYQSGP 109 (112)
T ss_dssp EECEEEECCSCCCSSCCC
T ss_pred cEEEEEEeCCCCCcccCC
Confidence 999999999999987654
No 44
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=143.64 Aligned_cols=88 Identities=30% Similarity=0.462 Sum_probs=84.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|..+...+.|.|+|++++.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 78999999999999999999999999999987778889999999998899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|++|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99998874
No 45
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=144.33 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=74.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc-CCceecC
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRG 292 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~g 292 (773)
+++|||+|||+++|+++|+++|++|| .|.. |+|++|+.||.++|||||+|.+.++|..||+.+ ++..|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~--------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE--------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB--------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE--------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 47899999999999999999999999 7888 999999999999999999999999999999877 4567999
Q ss_pred eEEEEEeeccc
Q psy2160 293 KKIKVERAKFT 303 (773)
Q Consensus 293 ~~I~V~~A~~~ 303 (773)
++|+|++|...
T Consensus 73 r~i~V~~a~~~ 83 (91)
T 2lxi_A 73 QKVSMHYSDPK 83 (91)
T ss_dssp EEEEEECCCSC
T ss_pred EEEEEEEcCCC
Confidence 99999998743
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.69 E-value=8.3e-17 Score=145.58 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=77.9
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
|..++|||+|||+++|+++|+++|++||.|.. |+|++|+.||+++|||||+|.+.++|..||+.|||..|.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~--------v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEE--------VEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 36689999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
++|+|.+|.
T Consensus 76 r~i~V~~a~ 84 (110)
T 3s8s_A 76 NIIHAQLDI 84 (110)
T ss_dssp EECEEEECS
T ss_pred eEEEEEECC
Confidence 999998875
No 47
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=6.7e-17 Score=147.44 Aligned_cols=79 Identities=18% Similarity=0.358 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||+++|+++|+++|++||.|. +|+|++|. +.++|||||+|.+.++|..||+.|||..|.|+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~ 73 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNIL--------SCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 73 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEE--------EEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 457899999999999999999999999999 89999997 44799999999999999999999999999999
Q ss_pred EEEEEEccc
Q psy2160 579 KIKVERAKF 587 (773)
Q Consensus 579 ~i~V~~a~~ 587 (773)
+|+|.++..
T Consensus 74 ~i~V~~a~~ 82 (115)
T 4f25_A 74 KVFVGRFKS 82 (115)
T ss_dssp ECEEEESSC
T ss_pred EEEEEECCC
Confidence 999999873
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=1.3e-16 Score=152.59 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=109.8
Q ss_pred CCCCCeEEEEEecCHHHHHHHHHHh-CCcccCCeeEEEEecCCCcccccchhHHHHHHHHHHHHHHhhhhhhhhhhhccc
Q psy2160 394 DKHPEGVAQIFFKEPEAADACRELL-NGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTM 472 (773)
Q Consensus 394 d~~~~G~afV~F~~~e~A~~Ai~~l-ng~~~~Gr~I~v~~~~~~~~~~~~~~~~e~~~r~~~~~~~l~~~~~~~~~~~~~ 472 (773)
...-.|+++|+|.+.++|.+|+..| ||..+.| .+.+.+..+......
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~------------------------------- 56 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE------------------------------- 56 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC-------------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc-------------------------------
Confidence 3456899999999999999999999 9999999 888876543221000
Q ss_pred CCCCCCCCCCchHHhhhhHhhhhcCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce
Q psy2160 473 KGEAYDPKLKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 552 (773)
Q Consensus 473 ~G~~~~p~~~~~~~r~~~~~~~~~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~ 552 (773)
......+.. ........++|||+|||+++|+++|+++|++||.|. .|+|+.+ ++||
T Consensus 57 ~~~~~~~~~-----------~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~ 112 (150)
T 2i2y_A 57 GSHHHHHHM-----------HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLR--------SVWVARN-----PPGF 112 (150)
T ss_dssp SSSSCCCCS-----------CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEE--------EEEECSS-----SCSE
T ss_pred ccccccccc-----------cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEE--------EEEEeeC-----CCcE
Confidence 000000000 011234679999999999999999999999999998 7999877 4899
Q ss_pred EEEEeCChHHHHHHHHHhCCceecCeEEEEEEccc
Q psy2160 553 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587 (773)
Q Consensus 553 afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~ 587 (773)
|||+|.+.++|..|+..|||..|.|++|+|.+|..
T Consensus 113 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 113 AFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp EEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred EEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 99999999999999999999999999999999873
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=142.25 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc--ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc---
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL--VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--- 288 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~--I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--- 288 (773)
.-.+|||+|||+++|+++|+++|++||. |.. |+|++|+.||+++|||||+|.+.++|..||+.||+.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~--------v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~ 79 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNN--------IRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGG--------EECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEE--------EEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC
Confidence 6789999999999999999999999996 455 999999999999999999999999999999999997
Q ss_pred -eecCeEEEEEeec
Q psy2160 289 -EIRGKKIKVERAK 301 (773)
Q Consensus 289 -~l~g~~I~V~~A~ 301 (773)
.|.|++|.|.+|+
T Consensus 80 ~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 80 LKIDGKTIGVDFAK 93 (95)
T ss_dssp EEETTEEEEEEECC
T ss_pred ceECCEEEEEEEcc
Confidence 4899999999986
No 50
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=141.10 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceecC
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRG 577 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~g 577 (773)
+++|||+|||+++|+++|+++|++|| .|. +|+|++|+.+|.++|||||+|.+.++|.+||+.| ++..|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~--------~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAR--------EVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCS--------BCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeE--------EEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 36899999999999999999999999 787 7999999999999999999999999999999887 5667999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
++|+|.+|...
T Consensus 73 r~i~V~~a~~~ 83 (91)
T 2lxi_A 73 QKVSMHYSDPK 83 (91)
T ss_dssp EEEEEECCCSC
T ss_pred EEEEEEEcCCC
Confidence 99999999843
No 51
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2e-16 Score=143.08 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=78.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+.++|||+|||.++|+++|+++|++||.|. +|+|++|+.||+++|||||+|.+.++|.+||+.|||..|.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~--------~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVE--------EVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3578999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|+|.+|.
T Consensus 76 r~i~V~~a~ 84 (110)
T 3s8s_A 76 NIIHAQLDI 84 (110)
T ss_dssp EECEEEECS
T ss_pred eEEEEEECC
Confidence 999999987
No 52
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4e-16 Score=141.60 Aligned_cols=90 Identities=29% Similarity=0.495 Sum_probs=84.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|..+..++.|.|+|++++.+|+++|||||+|.+.++|..||+.||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 77999999999999999999999999999977778888899999988899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 94 ~l~V~~a~~~ 103 (113)
T 2cpe_A 94 KLKVSLARKK 103 (113)
T ss_dssp ECEEECSSCC
T ss_pred EEEEEECCCC
Confidence 9999998743
No 53
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.66 E-value=6.6e-16 Score=148.87 Aligned_cols=145 Identities=15% Similarity=0.164 Sum_probs=107.2
Q ss_pred EEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhh
Q psy2160 537 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 616 (773)
Q Consensus 537 ~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 616 (773)
.++|+++.. .++|||||+|.++++|++|+..+++....+..+.+..+.......
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 55 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT------------------------ 55 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE------------------------
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc------------------------
Confidence 478888864 689999999999999999999888754443344433222110000
Q ss_pred hccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC----CCCCcEEEEEecC
Q psy2160 617 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKE 692 (773)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~----~~~~G~afV~F~~ 692 (773)
...............++|||.||+.. +++ ++|+++|++||.|..|.|.. +.++|+|||.|.+
T Consensus 56 ---~~~~~~~~~~~~~~~~~l~v~nl~~~--~~~---------~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~ 121 (158)
T 2kn4_A 56 ---EGSHHHHHHMDVEGMTSLKVDNLTYR--TSP---------DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 121 (158)
T ss_dssp ---CCCCCSSCCCCCCBCCEEEEESCCTT--CCH---------HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESB
T ss_pred ---ccccccccccCCCCCCEEEEeCCCCC--CCH---------HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECC
Confidence 00000001111234689999999765 443 89999999999999998864 5688999999999
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 693 PEAADACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 693 ~e~A~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
.++|.+|+..|||..|+||.|.|.+...+
T Consensus 122 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 122 KRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp HHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred HHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 99999999999999999999999997754
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=140.00 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc----
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY---- 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~---- 573 (773)
...++|||+|||+++|+++|+++|++||.|... +|+|++|+.||+++|||||+|.+.++|..|++.|||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~------~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~ 80 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVN------NIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPL 80 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGG------GEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEE------EEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCc
Confidence 456899999999999999999999999964311 6999999999999999999999999999999999997
Q ss_pred eecCeEEEEEEcc
Q psy2160 574 EIRGKKIKVERAK 586 (773)
Q Consensus 574 ~i~g~~i~V~~a~ 586 (773)
.|.|++|.|.+|+
T Consensus 81 ~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 81 KIDGKTIGVDFAK 93 (95)
T ss_dssp EETTEEEEEEECC
T ss_pred eECCEEEEEEEcc
Confidence 4899999999998
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.66 E-value=2.7e-16 Score=134.93 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=77.3
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
+.+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEE--------EEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 37799999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
++|+|++|+
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999998874
No 56
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=4.4e-16 Score=132.93 Aligned_cols=79 Identities=13% Similarity=0.305 Sum_probs=76.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLS--------GHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 68999999999999999999999999998 9999998889999999999999999999999999999999999
Q ss_pred EEEeecc
Q psy2160 296 KVERAKF 302 (773)
Q Consensus 296 ~V~~A~~ 302 (773)
+|.+|..
T Consensus 74 ~v~~a~~ 80 (83)
T 3md1_A 74 RINWAAK 80 (83)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 9999874
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=134.03 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|++.||+..|.|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 6799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 77 ~l~v~~a~~ 85 (87)
T 3bs9_A 77 QIRTNWATR 85 (87)
T ss_dssp ECEEEEEC-
T ss_pred EEEEEecCC
Confidence 999999873
No 58
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=7.4e-16 Score=147.32 Aligned_cols=145 Identities=19% Similarity=0.267 Sum_probs=112.4
Q ss_pred EEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceecCeEEEEEEccccccCCcCCCCCCchhhhHHHHHHHHHHhh
Q psy2160 538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQE 616 (773)
Q Consensus 538 i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~g~~i~V~~a~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 616 (773)
..|..+- ...+|+++|+|.+.++|.+|+..| ||..+.| .|.+.++..........
T Consensus 3 ~al~l~g--~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~--------------------- 58 (150)
T 2i2y_A 3 YKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS--------------------- 58 (150)
T ss_dssp EEEEECC--SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS---------------------
T ss_pred eEeeecc--ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc---------------------
Confidence 4455553 467999999999999999999999 9999999 99999876321100000
Q ss_pred hccCCCCccccCCCCCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHH
Q psy2160 617 KLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696 (773)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A 696 (773)
...............++|||.||+.. +++ ++|+++|++||.|..|.|... ++|+|||.|.+.++|
T Consensus 59 ---~~~~~~~~~~~~~~~~~l~V~nl~~~--~t~---------~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a 123 (150)
T 2i2y_A 59 ---HHHHHHMHRDSCPLDCKVYVGNLGNN--GNK---------TELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDA 123 (150)
T ss_dssp ---SSCCCCSCSSSSTTSCEEEEESCCSC--CSC---------HHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHH
T ss_pred ---ccccccccccCCCCCCEEEEeCCCCC--CCH---------HHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHH
Confidence 00000011122345689999999765 444 899999999999999988765 689999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEEecCc
Q psy2160 697 DACRELLNGRWFGQRQITAETWDGK 721 (773)
Q Consensus 697 ~~Ai~~lnGr~f~Gr~l~v~~~dgk 721 (773)
.+|+..|||..|+||+|.|.+..++
T Consensus 124 ~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 124 ADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999997654
No 59
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.64 E-value=3.6e-16 Score=142.83 Aligned_cols=82 Identities=28% Similarity=0.573 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCC--------CCCcEEEEEecCHHHHHHHHHHhC
Q psy2160 633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK--------HPEGVAQIFFKEPEAADACRELLN 704 (773)
Q Consensus 633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~--------~~~G~afV~F~~~e~A~~Ai~~ln 704 (773)
+++||+|+||+++.++.+ +|++||+++|++||.|.+|.|+.. .+.|+|||+|.++++|.+|+..||
T Consensus 19 ps~vl~L~Nm~~~~el~d------dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHH------HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 479999999999977654 467999999999999999988753 235999999999999999999999
Q ss_pred CceeCCeEEEEEEecC
Q psy2160 705 GRWFGQRQITAETWDG 720 (773)
Q Consensus 705 Gr~f~Gr~l~v~~~dg 720 (773)
|++|+||.|.|.||+.
T Consensus 93 Gr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEECCcEEEEEEcCh
Confidence 9999999999999986
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=5.2e-16 Score=133.10 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=77.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 76 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 76 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEE--------EEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4679999999999999999999999999999 79999998889999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
++|+|++|+
T Consensus 77 ~~l~v~~ak 85 (85)
T 3mdf_A 77 RTIRVNLAK 85 (85)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999885
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=1.9e-16 Score=137.79 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+|||+|||.++|+++|+++|++|| .|.. |+|++++.||+++|||||+|.+.++|..||+.|||..|.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~--------v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCC--------EEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEE--------EEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 5799999999999999999999999 8888 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|..+..
T Consensus 74 ~i~V~~~~~ 82 (90)
T 3p5t_L 74 NPVVTPSNK 82 (90)
T ss_dssp CCEECCC--
T ss_pred EEEEEECCC
Confidence 999988763
No 62
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=137.40 Aligned_cols=90 Identities=30% Similarity=0.460 Sum_probs=81.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|..+...+.|.|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45679999999999999999999999999999444444444999999989999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|+|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999874
No 63
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.8e-16 Score=136.15 Aligned_cols=82 Identities=23% Similarity=0.352 Sum_probs=78.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSE--------LHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 6799999999999999999999999999998 99999997899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 79 ~l~V~~a~~~ 88 (99)
T 1whw_A 79 MLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=8.5e-16 Score=132.39 Aligned_cols=81 Identities=19% Similarity=0.324 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. +|+++.++.+|.++|||||+|.+.++|..|+..|||..+.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3578999999999999999999999999998 89999998889999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|+|.+|+
T Consensus 76 ~~l~v~~a~ 84 (87)
T 3bs9_A 76 RQIRTNWAT 84 (87)
T ss_dssp EECEEEEEC
T ss_pred eEEEEEecC
Confidence 999999997
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=1.6e-16 Score=141.18 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=77.4
Q ss_pred CccEEEEcCCCC------CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPL------DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~------~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
.+++|||+|||. ++++++|+++|++||.|.. |+|++++.||+++|||||+|.+.++|..||+.|||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~--------v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVN--------MEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEE--------EECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 578999999999 9999999999999999998 99999999999999999999999999999999999
Q ss_pred ceecC-eEEEEEeec
Q psy2160 288 YEIRG-KKIKVERAK 301 (773)
Q Consensus 288 ~~l~g-~~I~V~~A~ 301 (773)
..|.| ++|+|.+|.
T Consensus 77 ~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMK 91 (100)
T ss_dssp CBSSSSCBCEEEESH
T ss_pred cccCCCeEEEEEECc
Confidence 99999 999999886
No 66
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.63 E-value=1e-15 Score=130.59 Aligned_cols=79 Identities=13% Similarity=0.305 Sum_probs=76.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++|||+|||.++|+++|+++|++||.|. .|++++++.+|.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 73 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYL--------SGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 73 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 6899999999999999999999999999 79999998889999999999999999999999999999999999
Q ss_pred EEEEccc
Q psy2160 581 KVERAKF 587 (773)
Q Consensus 581 ~V~~a~~ 587 (773)
+|.+|..
T Consensus 74 ~v~~a~~ 80 (83)
T 3md1_A 74 RINWAAK 80 (83)
T ss_dssp EEEECCC
T ss_pred EEEecCc
Confidence 9999983
No 67
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=133.36 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=77.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEE--------EEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeE--------EEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 7899999999999999999999999999998 99999999899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|++|+
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99999876
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=8e-16 Score=134.93 Aligned_cols=82 Identities=26% Similarity=0.428 Sum_probs=78.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.||.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDN--------IVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 6799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 76 ~l~V~~a~~~ 85 (95)
T 2dnz_A 76 PMRVGHVTER 85 (95)
T ss_dssp CCEEEESSCC
T ss_pred EEEEEEcccc
Confidence 9999998743
No 69
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-16 Score=135.56 Aligned_cols=80 Identities=30% Similarity=0.494 Sum_probs=77.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|++.||+..|.|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVK--------VTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEE--------EEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 7799999999999999999999999999998 99999999899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|++|+
T Consensus 87 ~l~v~~ak 94 (94)
T 2e5h_A 87 VIKASIAI 94 (94)
T ss_dssp EEEEEECC
T ss_pred EEEEEecC
Confidence 99999874
No 70
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=8.1e-16 Score=135.33 Aligned_cols=80 Identities=29% Similarity=0.466 Sum_probs=77.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeE
Q psy2160 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 294 (773)
Q Consensus 215 ~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~ 294 (773)
+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVIN--------LKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 589999999999999999999999999998 999999988999999999999999999999999999999999
Q ss_pred EEEEeecc
Q psy2160 295 IKVERAKF 302 (773)
Q Consensus 295 I~V~~A~~ 302 (773)
|+|.+|..
T Consensus 74 l~V~~a~~ 81 (96)
T 2x1f_A 74 LKCGYSSN 81 (96)
T ss_dssp CEEEECSC
T ss_pred EEEEEcCC
Confidence 99999874
No 71
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.5e-16 Score=136.40 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=78.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCC--------EECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 7799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 83 ~l~V~~a~~~ 92 (102)
T 2cqb_A 83 TIRVNLAKPM 92 (102)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 9999998754
No 72
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.3e-16 Score=134.78 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeE-EEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i-~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||.++|+++|+++|++||.|.. | +|++++.+|.++|||||+|.+.++|..||..||+..|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQ--------TPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSS--------CCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 6799999999999999999999999999998 8 999998889999999999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 76 ~~l~v~~a~~ 85 (96)
T 1x5t_A 76 RPITVSYAFK 85 (96)
T ss_dssp EECEEEESCC
T ss_pred EEEEEEEecc
Confidence 9999999874
No 73
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=1.5e-15 Score=131.01 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=74.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.||+++|||||+|.+.++|..||+ +++..|.|+
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 80 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVD--------CTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR 80 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE
Confidence 7799999999999999999999999999998 9999999899999999999999999999997 588899999
Q ss_pred EEEEEee
Q psy2160 294 KIKVERA 300 (773)
Q Consensus 294 ~I~V~~A 300 (773)
+|.|.+|
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999875
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.62 E-value=2.2e-15 Score=137.17 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVS--------AKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSE--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 6799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 96 ~l~V~~a~~~ 105 (115)
T 2cpz_A 96 RLKVQLKRSK 105 (115)
T ss_dssp ECEEECCCCS
T ss_pred EEEEEEcCCC
Confidence 9999998743
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=137.68 Aligned_cols=92 Identities=29% Similarity=0.494 Sum_probs=85.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|..+..++.|.|+|+.++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34679999999999999999999999999998777777778999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|+..
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999999843
No 76
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=1.2e-15 Score=136.61 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=72.7
Q ss_pred CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC-----CCCCcEEEEEecCHHHHHHHHHHhCCc
Q psy2160 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD-----KHPEGVAQIFFKEPEAADACRELLNGR 706 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~-----~~~~G~afV~F~~~e~A~~Ai~~lnGr 706 (773)
.++++|+|+||+++.++.+ +++++|+++|++||.|.+|.|+. +.++|+|||+|.++++|.+|+..|||+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~d------d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDE------DLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp SCCSEEEEESSSCSCCC---------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCChHHhhH------HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 4579999999998876643 35799999999999999998864 357899999999999999999999999
Q ss_pred eeCCeEEEEEEecC
Q psy2160 707 WFGQRQITAETWDG 720 (773)
Q Consensus 707 ~f~Gr~l~v~~~dg 720 (773)
+|+||.|.|.|+++
T Consensus 80 ~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 80 YFGGRVVKACFYNL 93 (105)
T ss_dssp EETTEECEEEECCH
T ss_pred EECCcEEEEEEcCH
Confidence 99999999999875
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.3e-15 Score=131.87 Aligned_cols=80 Identities=31% Similarity=0.481 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|+ .||+..|.|+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~ 75 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNR--------VTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR 75 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEE--------EEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc
Confidence 4689999999999999999999999999998 999999888999999999999999999999 8999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|+.
T Consensus 76 ~l~V~~a~~ 84 (89)
T 3ucg_A 76 QIKVIPKRT 84 (89)
T ss_dssp ECEEEETTT
T ss_pred EEEEEEccC
Confidence 999998874
No 78
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=134.63 Aligned_cols=82 Identities=23% Similarity=0.321 Sum_probs=77.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC---CCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~---tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|.++.. ||.++|||||+|.+.++|..||..||+..|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKS--------CTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 6799999999999999999999999999998 99999876 679999999999999999999999999999
Q ss_pred cCeEEEEEeeccc
Q psy2160 291 RGKKIKVERAKFT 303 (773)
Q Consensus 291 ~g~~I~V~~A~~~ 303 (773)
.|++|+|.+|...
T Consensus 76 ~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 76 DGHKLEVRISERA 88 (98)
T ss_dssp TTEECEEECSSCS
T ss_pred CCeEEEEEEccCC
Confidence 9999999998743
No 79
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2e-15 Score=133.51 Aligned_cols=84 Identities=21% Similarity=0.344 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLS--------ELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ 76 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999999999999999999999998 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|...
T Consensus 77 g~~l~V~~a~~~ 88 (99)
T 1whw_A 77 GRMLHVLPSTIK 88 (99)
T ss_dssp SCEEEEEECCCC
T ss_pred CcEEEEEEcCCC
Confidence 999999999854
No 80
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=137.33 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=78.2
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
+..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||+.|||..|.|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g 95 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG 95 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEE--------EEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 37799999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999998863
No 81
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=133.26 Aligned_cols=80 Identities=30% Similarity=0.442 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+.+. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKD--------LRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 6799999999999999999999999999998 9999999 599999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 87 ~l~v~~a~~ 95 (100)
T 2do4_A 87 IIKVAISNS 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 999999874
No 82
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.62 E-value=1.5e-15 Score=133.63 Aligned_cols=80 Identities=28% Similarity=0.461 Sum_probs=77.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|++||.|. +|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|+.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 73 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVI--------NLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRF 73 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 58999999999999999999999999999 7999999988999999999999999999999999999999999
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
|+|.+|..
T Consensus 74 l~V~~a~~ 81 (96)
T 2x1f_A 74 LKCGYSSN 81 (96)
T ss_dssp CEEEECSC
T ss_pred EEEEEcCC
Confidence 99999984
No 83
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=134.95 Aligned_cols=82 Identities=21% Similarity=0.418 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISE--------VVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 7799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 83 ~l~v~~a~~~ 92 (102)
T 1x5s_A 83 QIRVDQAGKS 92 (102)
T ss_dssp CCEEEEEECC
T ss_pred EEEEEECCCC
Confidence 9999998853
No 84
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=133.38 Aligned_cols=82 Identities=30% Similarity=0.494 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 84 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVV--------KVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF 84 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEE--------EEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34578999999999999999999999999999 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|+|.+|+
T Consensus 85 g~~l~v~~ak 94 (94)
T 2e5h_A 85 GRVIKASIAI 94 (94)
T ss_dssp TEEEEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 85
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.61 E-value=3.4e-15 Score=135.89 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|++++.+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISD--------ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 7799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 86 ~l~V~~a~~~ 95 (115)
T 2dgo_A 86 QIRTNWATRK 95 (115)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999998743
No 86
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-15 Score=135.83 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=78.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISR--------IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 6799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 86 ~l~v~~a~~~ 95 (103)
T 2cq0_A 86 ILNVEWAKPS 95 (103)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9999998743
No 87
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=132.49 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=79.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKID--------NIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4578999999999999999999999999999 79999999899999999999999999999999999999999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
++|+|.+|...
T Consensus 75 ~~l~V~~a~~~ 85 (95)
T 2dnz_A 75 RPMRVGHVTER 85 (95)
T ss_dssp SCCEEEESSCC
T ss_pred cEEEEEEcccc
Confidence 99999999843
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=136.08 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=78.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 6799999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 94 ~l~V~~a~~ 102 (106)
T 1p27_B 94 PISVDWCFV 102 (106)
T ss_dssp BCEEEESEE
T ss_pred EEEEEeecC
Confidence 999999874
No 89
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.3e-15 Score=133.14 Aligned_cols=80 Identities=29% Similarity=0.460 Sum_probs=77.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 79 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTE--------VVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK 79 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEE--------EEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe
Confidence 7799999999999999999999999999998 9999999889999999999999999999999 999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 80 ~l~V~~a~~ 88 (99)
T 2dgs_A 80 KVEVKRAEP 88 (99)
T ss_dssp BCEEEECCC
T ss_pred EEEEEECCC
Confidence 999999874
No 90
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=132.46 Aligned_cols=79 Identities=24% Similarity=0.402 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++. |.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTK--------VTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 7799999999999999999999999999998 99999998 99999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|.+|+
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99998875
No 91
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=133.05 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..+.++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 83 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEE--------EEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCee--------EEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578999999999999999999999999998 7999999998999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|+|.+|+
T Consensus 84 g~~l~v~~a~ 93 (95)
T 2cqc_A 84 GRRIRVSGPS 93 (95)
T ss_dssp TEEEEEECCS
T ss_pred CEEEEEEecC
Confidence 9999999987
No 92
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=132.81 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEE-EEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i-~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
.+.++|||+|||.++|+++|+++|+.||.|. .| +|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 74 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVIL--------QTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC 74 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBS--------SCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 3578999999999999999999999999998 68 99999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|...
T Consensus 75 g~~l~v~~a~~~ 86 (96)
T 1x5t_A 75 NRPITVSYAFKK 86 (96)
T ss_dssp TEECEEEESCCC
T ss_pred CEEEEEEEeccc
Confidence 999999999843
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.1e-16 Score=136.98 Aligned_cols=78 Identities=21% Similarity=0.342 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++.. |.++|||||+|.+.++|..||. +++..|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~--------v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEE--------EEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEE--------EEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 6799999999999999999999999999998 99999998 9999999999999999999999 899999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|.|.++.
T Consensus 80 ~l~V~~~~ 87 (103)
T 1s79_A 80 DLLILFKD 87 (103)
T ss_dssp TCEEEEHH
T ss_pred EEEEEEch
Confidence 99998765
No 94
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=1.2e-15 Score=133.87 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=75.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. +.++.+..+|+++|||||+|.+.++|.+||+.||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTT--------CCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 5699999999999999999999999999998 88888888899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|.++.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2ek1_A 86 KVKLSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEecc
Confidence 99998875
No 95
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=2.3e-15 Score=132.83 Aligned_cols=80 Identities=15% Similarity=0.220 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. ++++.+..+|+++|||||+|.+.++|.+||+.||+..|.|+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 85 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPG--------SVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTT--------TCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccc--------eEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 6799999999999999999999999999997 78888888899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|+++.
T Consensus 86 ~l~V~~a~ 93 (98)
T 2cqp_A 86 KVKLVLGS 93 (98)
T ss_dssp ECEEEESS
T ss_pred EEEEEEcC
Confidence 99999876
No 96
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.9e-15 Score=135.12 Aligned_cols=82 Identities=24% Similarity=0.432 Sum_probs=78.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVN--------THMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 7799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 86 ~l~v~~a~~~ 95 (105)
T 1x5u_A 86 PIRVNKASAH 95 (105)
T ss_dssp BCEEEETTTT
T ss_pred EEEEEECCCC
Confidence 9999998743
No 97
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=145.50 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=75.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
..++|||+|||+++|+++|+++|+.|| .|.. |+|++|+.||+++|||||+|.+.++|..||..|||..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVE--------LKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 679999999999999999999999999 8888 999999999999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q psy2160 292 GKKIKVERAK 301 (773)
Q Consensus 292 g~~I~V~~A~ 301 (773)
|++|+|.+|.
T Consensus 126 Gr~l~V~~a~ 135 (156)
T 3n9u_C 126 GEKVDVRPAT 135 (156)
T ss_dssp TEECEEEECC
T ss_pred CeEeEEEEcC
Confidence 9999999886
No 98
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=133.90 Aligned_cols=81 Identities=12% Similarity=0.259 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCccc-ccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVM-KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~-~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||.++|+++|+++|++||.|. . |+|++++.||.++|||||+|.+.++|..||+.||+..|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMS--------VKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCE--------EEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceE--------EEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 679999999999999999999999999999 7 9999999889999999999999999999999999999999
Q ss_pred eE----EEEEeecc
Q psy2160 293 KK----IKVERAKF 302 (773)
Q Consensus 293 ~~----I~V~~A~~ 302 (773)
+. |+|.+|..
T Consensus 80 ~~~~~~l~v~~a~~ 93 (99)
T 2div_A 80 ATPAKRFKLNYATY 93 (99)
T ss_dssp CSSCEECCEEETTC
T ss_pred CCcceeEEEeecCC
Confidence 99 99999874
No 99
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.60 E-value=4.3e-16 Score=138.38 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 499 ENTKVYVSNLPL------DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 499 ~~~~l~V~nLp~------~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
..++|||+|||. ++++++|+++|++||.|. +|+|++++.||+++|||||+|.+.++|.+||+.|||
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~--------~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVV--------NMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEE--------EEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEe--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 999999999999999999 899999999999999999999999999999999999
Q ss_pred ceecC-eEEEEEEcc
Q psy2160 573 YEIRG-KKIKVERAK 586 (773)
Q Consensus 573 ~~i~g-~~i~V~~a~ 586 (773)
..|.| +.|+|.+|.
T Consensus 77 ~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 77 KRLDLKHRLFLYTMK 91 (100)
T ss_dssp CBSSSSCBCEEEESH
T ss_pred cccCCCeEEEEEECc
Confidence 99999 999999997
No 100
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.60 E-value=2.6e-15 Score=134.53 Aligned_cols=82 Identities=23% Similarity=0.410 Sum_probs=78.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee---
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--- 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l--- 290 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.||.++|||||+|.+.++|..||+.||+..+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYE--------LTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCE--------EECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 7799999999999999999999999999998 99999999999999999999999999999999999987
Q ss_pred cCeEEEEEeeccc
Q psy2160 291 RGKKIKVERAKFT 303 (773)
Q Consensus 291 ~g~~I~V~~A~~~ 303 (773)
.|++|+|.+|...
T Consensus 84 ~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 84 MNRPIQVKPADSE 96 (106)
T ss_dssp CSSCCEEEECCCC
T ss_pred CCceEEEEECCcc
Confidence 8899999998753
No 101
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.60 E-value=2e-15 Score=138.16 Aligned_cols=80 Identities=21% Similarity=0.431 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+.++|..||+.|||..|.|+
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVIS--------AKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEE--------EEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 7799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|++++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99998864
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=8.3e-16 Score=129.23 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=72.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
++|||+|||.++|+++|+++|++||.|.. |++++++.+|.++|||||+|.+.++|..|++.++ ..|.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCC--------EEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 58999999999999999999999999998 9999999889999999999999999999999998 99999999
Q ss_pred EEEee
Q psy2160 296 KVERA 300 (773)
Q Consensus 296 ~V~~A 300 (773)
+|.+|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99876
No 103
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.60 E-value=7.1e-16 Score=129.04 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
+|||+|||.++|+++|+++|++||.|.. |++++++.+|.++|||||+|.+.++|..|++ ||+..|.|++|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDD--------AMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSE--------ECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 5899999999999999999999999998 9999999889999999999999999999998 999999999999
Q ss_pred EEee
Q psy2160 297 VERA 300 (773)
Q Consensus 297 V~~A 300 (773)
|.+|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9765
No 104
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.60 E-value=5.5e-16 Score=134.81 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=72.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
.+|||+|||.++|+++|+++|+.|| .|. +|+|+.|+.+|+++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~--------~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCC--------CEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceE--------EEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 4799999999999999999999999 888 799999998999999999999999999999999999999999
Q ss_pred EEEEEEccc
Q psy2160 579 KIKVERAKF 587 (773)
Q Consensus 579 ~i~V~~a~~ 587 (773)
.|+|.++..
T Consensus 74 ~i~V~~~~~ 82 (90)
T 3p5t_L 74 NPVVTPSNK 82 (90)
T ss_dssp CCEECCC--
T ss_pred EEEEEECCC
Confidence 999999884
No 105
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.5e-15 Score=135.32 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..||.++|||||+|.+.++|..||..||+..|.|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGD--------VYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 6799999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2dnm_A 84 ELRVQVARY 92 (103)
T ss_dssp CCEEEECSS
T ss_pred EEEEEECCc
Confidence 999999874
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=130.90 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=76.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCC-cceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~-~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++..++. ++|||||+|.+.++|..|+..|||..|.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKM--------IDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEE--------EECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 5689999999999999999999999999998 99999987666 89999999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|+++..
T Consensus 75 ~~l~v~~a~~ 84 (88)
T 4a8x_A 75 QEITATAVLA 84 (88)
T ss_dssp EECEEEEECC
T ss_pred eEEEEEECCC
Confidence 9999998863
No 107
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.60 E-value=3.3e-15 Score=136.44 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=77.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+.+. +|.++|||||+|.+.++|..||+.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~ 76 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISE--------VLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGK 76 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSE--------EEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 6799999999999999999999999999998 9999998 699999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 77 ~l~V~~a~~~ 86 (116)
T 2fy1_A 77 AIKVEQAKKP 86 (116)
T ss_dssp BCEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998743
No 108
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=5.2e-15 Score=132.30 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++. |.++|||||+|.+.++|..||+.||+..+.|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~-g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDE--------CTVLRGPD-GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECSS-SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 6799999999999999999999999999998 99999985 9999999999999999999999999999988
Q ss_pred --eEEEEEeecc
Q psy2160 293 --KKIKVERAKF 302 (773)
Q Consensus 293 --~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 85 ~~~~l~V~~a~~ 96 (105)
T 2dnh_A 85 ASSSLVVKFADT 96 (105)
T ss_dssp CSSCCEEEESCS
T ss_pred CCccEEEEECcc
Confidence 9999999874
No 109
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=132.95 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 80 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCC--------CEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999999999999999999999999 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|...
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2cqb_A 81 GRTIRVNLAKPM 92 (102)
T ss_dssp TEEEEEEECCCC
T ss_pred CcEEEEEeCCCC
Confidence 999999999843
No 110
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=3.8e-15 Score=133.72 Aligned_cols=79 Identities=19% Similarity=0.307 Sum_probs=76.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||..+|+++|+++|++||.|.. |+|+++. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 7899999999999999999999999999998 9999999 699999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|++|.
T Consensus 99 ~l~V~~a~ 106 (107)
T 3ulh_A 99 PMNIQLVT 106 (107)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 111
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=4.6e-15 Score=128.30 Aligned_cols=79 Identities=32% Similarity=0.470 Sum_probs=75.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. .|+++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~ 76 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVN--------RVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQ 76 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEE--------EEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence 47999999999999999999999999999 8999999888999999999999999999999 99999999999
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
|+|.+++.
T Consensus 77 l~V~~a~~ 84 (89)
T 3ucg_A 77 IKVIPKRT 84 (89)
T ss_dssp CEEEETTT
T ss_pred EEEEEccC
Confidence 99999984
No 112
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.59 E-value=6.2e-15 Score=134.18 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=79.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+..+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS--------DARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45679999999999999999999999999999 8999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 84 g~~l~V~~a~~~ 95 (115)
T 2dgo_A 84 GRQIRTNWATRK 95 (115)
T ss_dssp TEECEEEESSCC
T ss_pred CEEEEEEEccCC
Confidence 999999999854
No 113
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=3.1e-15 Score=134.99 Aligned_cols=81 Identities=27% Similarity=0.312 Sum_probs=78.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+.+..+|.++|||||+|.+.++|..||..|||..|.|+
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 96 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 96 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 7799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 97 ~l~V~~a~~ 105 (110)
T 1oo0_B 97 TIQVDWCFV 105 (110)
T ss_dssp ECEEEESEE
T ss_pred EEEEEEccc
Confidence 999999874
No 114
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=131.81 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=77.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC---CCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY---TKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~---tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+.++. ||.++|||||+|.+.++|..|+..|||..
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIK--------SCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCe
Confidence 3578999999999999999999999999998 799998876 56899999999999999999999999999
Q ss_pred ecCeEEEEEEcccc
Q psy2160 575 IRGKKIKVERAKFT 588 (773)
Q Consensus 575 i~g~~i~V~~a~~~ 588 (773)
|.|++|+|.+|...
T Consensus 75 ~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 75 VDGHKLEVRISERA 88 (98)
T ss_dssp ETTEECEEECSSCS
T ss_pred eCCeEEEEEEccCC
Confidence 99999999999843
No 115
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5e-15 Score=131.97 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++ +|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITS--------AKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEE--------EEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 7899999999999999999999999999998 999998 599999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 84 ~l~V~~a~~~ 93 (103)
T 2d9p_A 84 PLYVALAQRK 93 (103)
T ss_dssp BCEEEECSSC
T ss_pred EEEEEEeccc
Confidence 9999998753
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.59 E-value=6e-16 Score=145.29 Aligned_cols=82 Identities=26% Similarity=0.436 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|+.||.|. .|+|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVG--------DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCS--------EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 468999999999999999999999999998 799999988899999999999999999999999999999999
Q ss_pred EEEEEEcccc
Q psy2160 579 KIKVERAKFT 588 (773)
Q Consensus 579 ~i~V~~a~~~ 588 (773)
+|+|.+|+..
T Consensus 118 ~l~V~~a~~~ 127 (135)
T 2lea_A 118 ELRVQMARYG 127 (135)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEECCCC
Confidence 9999999843
No 117
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=4.7e-15 Score=127.80 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..|+. +++..|.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 78 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV--------DCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD 78 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC
Confidence 45678999999999999999999999999999 89999999999999999999999999999995 5888999
Q ss_pred CeEEEEEEc
Q psy2160 577 GKKIKVERA 585 (773)
Q Consensus 577 g~~i~V~~a 585 (773)
|+.|.|.+|
T Consensus 79 g~~i~v~~A 87 (87)
T 3s7r_A 79 GRVIDPKKA 87 (87)
T ss_dssp TEEEEEEEC
T ss_pred CEEEEEEeC
Confidence 999999976
No 118
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=133.45 Aligned_cols=84 Identities=21% Similarity=0.421 Sum_probs=79.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQIS--------EVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD 80 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999999999999999999999998 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|+..
T Consensus 81 g~~l~v~~a~~~ 92 (102)
T 1x5s_A 81 GRQIRVDQAGKS 92 (102)
T ss_dssp SCCCEEEEEECC
T ss_pred CeEEEEEECCCC
Confidence 999999999843
No 119
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.6e-15 Score=131.50 Aligned_cols=82 Identities=29% Similarity=0.432 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 84 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVK--------DLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIK 84 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34678999999999999999999999999998 79999998 7999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|+|.+|..
T Consensus 85 g~~l~v~~a~~ 95 (100)
T 2do4_A 85 ENIIKVAISNS 95 (100)
T ss_dssp SCEEEEEECCC
T ss_pred CEEEEEEECCC
Confidence 99999999984
No 120
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.59 E-value=7.7e-15 Score=138.23 Aligned_cols=81 Identities=20% Similarity=0.364 Sum_probs=78.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|++++.||.++|||||+|.+.++|..||..||+..|.|+
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIES--------VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEE--------EEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 7799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 113 ~l~v~~a~~ 121 (139)
T 1u6f_A 113 RLKVALAAS 121 (139)
T ss_dssp EEEEEESSC
T ss_pred EEEEEECCC
Confidence 999999874
No 121
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=133.44 Aligned_cols=84 Identities=26% Similarity=0.368 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..||..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 83 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSIS--------RIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD 83 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC
Confidence 34679999999999999999999999999999 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 84 g~~l~v~~a~~~ 95 (103)
T 2cq0_A 84 HLILNVEWAKPS 95 (103)
T ss_dssp TEECEEEESSCC
T ss_pred CcEEEEEECCCC
Confidence 999999999843
No 122
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-15 Score=134.25 Aligned_cols=84 Identities=23% Similarity=0.380 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVG--------DVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD 81 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34679999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|+..
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2dnm_A 82 GRELRVQVARYG 93 (103)
T ss_dssp TBCCEEEECSSC
T ss_pred CcEEEEEECCcC
Confidence 999999999843
No 123
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=8.1e-15 Score=130.68 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=75.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++|| |.. |+|+++..||+++|||||+|.+.++|..|| .||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRS--------VRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceE--------EEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 679999999999999999999999998 777 999999999999999999999999999999 7999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2dng_A 84 SLRVDIAEG 92 (103)
T ss_dssp ECEEEECCC
T ss_pred EEEEEEecC
Confidence 999999874
No 124
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.6e-15 Score=133.29 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=77.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++. |.++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVR--------ADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 6799999999999999999999999999998 99999986 99999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998743
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.6e-14 Score=133.29 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=77.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++. +|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 104 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 104 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSE--------EEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 7799999999999999999999999999998 9999999 699999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|++|..
T Consensus 105 ~l~V~~a~~ 113 (124)
T 2kt5_A 105 PMDIQLVAS 113 (124)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeCC
Confidence 999999874
No 126
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.8e-15 Score=132.41 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=77.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEec-CCCCCcceEEEEEecChHHHHHHHHHc-CCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d-~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~ 291 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++ ..+|.++|||||+|.+.++|..||..| |+..|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKT--------VRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEE--------EEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 7799999999999999999999999999998 999999 677999999999999999999999999 999999
Q ss_pred CeEEEEEeeccc
Q psy2160 292 GKKIKVERAKFT 303 (773)
Q Consensus 292 g~~I~V~~A~~~ 303 (773)
|++|+|.+|...
T Consensus 86 g~~l~v~~a~~~ 97 (107)
T 2cph_A 86 GRRLVLEWADSE 97 (107)
T ss_dssp SCBCEEEECCCC
T ss_pred CCEEEEEeCCCC
Confidence 999999998743
No 127
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.1e-15 Score=133.75 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=79.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVV--------NTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 45679999999999999999999999999999 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|...
T Consensus 84 g~~l~v~~a~~~ 95 (105)
T 1x5u_A 84 GKPIRVNKASAH 95 (105)
T ss_dssp SCBCEEEETTTT
T ss_pred CeEEEEEECCCC
Confidence 999999999843
No 128
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=134.29 Aligned_cols=80 Identities=29% Similarity=0.527 Sum_probs=77.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVS--------FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSE--------EEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeE--------EEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 6799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|.+|.
T Consensus 79 ~l~v~~a~ 86 (104)
T 1p1t_A 79 ALRVDNAA 86 (104)
T ss_dssp CBEEEETT
T ss_pred EEEEEeCC
Confidence 99999876
No 129
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.8e-15 Score=134.28 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeE--------EEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 4568999999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.+|..
T Consensus 93 ~~l~V~~a~~ 102 (106)
T 1p27_B 93 QPISVDWCFV 102 (106)
T ss_dssp SBCEEEESEE
T ss_pred cEEEEEeecC
Confidence 9999999984
No 130
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.58 E-value=6.4e-15 Score=134.09 Aligned_cols=84 Identities=20% Similarity=0.388 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+++..+|.++|||||+|.+.++|.+||+.|||..|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 93 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVV--------SAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG 93 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCS--------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34568999999999999999999999999998 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+++..
T Consensus 94 g~~l~V~~a~~~ 105 (115)
T 2cpz_A 94 MKRLKVQLKRSK 105 (115)
T ss_dssp TEECEEECCCCS
T ss_pred CEEEEEEEcCCC
Confidence 999999999843
No 131
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=130.66 Aligned_cols=83 Identities=27% Similarity=0.440 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|++ ||+..|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~ 77 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVT--------EVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM 77 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEE--------EEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC
Confidence 34678999999999999999999999999998 79999999889999999999999999999998 9999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 78 g~~l~V~~a~~~ 89 (99)
T 2dgs_A 78 GKKVEVKRAEPR 89 (99)
T ss_dssp SCBCEEEECCCC
T ss_pred CeEEEEEECCCC
Confidence 999999999843
No 132
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4e-15 Score=134.42 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=78.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC------C
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD------G 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln------g 287 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.||.++|||||+|.+.++|..||..|| +
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKY--------VRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 6799999999999999999999999999998 9999999999999999999999999999999999 9
Q ss_pred ceecCeEEEEEeecc
Q psy2160 288 YEIRGKKIKVERAKF 302 (773)
Q Consensus 288 ~~l~g~~I~V~~A~~ 302 (773)
..|.|++|+|.+|..
T Consensus 86 ~~~~g~~l~v~~a~~ 100 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVT 100 (111)
T ss_dssp EESSSCEEEEECCCC
T ss_pred cEEcCEEEEEEECCC
Confidence 999999999999874
No 133
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.58 E-value=4.9e-15 Score=129.89 Aligned_cols=80 Identities=24% Similarity=0.411 Sum_probs=76.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+.++. |.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLT--------KVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4568999999999999999999999999999 799999987 8999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
++|+|.+|+
T Consensus 85 ~~l~V~~a~ 93 (95)
T 2ywk_A 85 RPINVSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred CEEEEEEcC
Confidence 999999986
No 134
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=132.97 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=70.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
|+|||+|||.++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|..|+..||+..|.|++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRT--------VWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSE--------EEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 68999999999999999999999999998 999876 68999999999999999999999999999999
Q ss_pred EEEeeccc
Q psy2160 296 KVERAKFT 303 (773)
Q Consensus 296 ~V~~A~~~ 303 (773)
+|.+|...
T Consensus 68 ~V~~a~~~ 75 (101)
T 2hvz_A 68 RVELSTGM 75 (101)
T ss_dssp EEEESSSC
T ss_pred EEEEccCC
Confidence 99998754
No 135
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=5.5e-15 Score=134.32 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=76.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|+.+..||.++|||||+|.+.++|..|| .||+..|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRD--------VRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeE--------EEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 6799999999999999999999999999998 999999999999999999999999999999 8999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 95 ~l~V~~a~~ 103 (114)
T 2cq4_A 95 PIIVQASQA 103 (114)
T ss_dssp EEEEEEHHH
T ss_pred EEEEEecCC
Confidence 999998763
No 136
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=2.5e-15 Score=135.41 Aligned_cols=82 Identities=26% Similarity=0.460 Sum_probs=78.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~ 94 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIE--------SIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 94 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEE--------EEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 44678999999999999999999999999998 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|+|.+|+
T Consensus 95 g~~l~V~~a~ 104 (108)
T 2jrs_A 95 GRPMKVGHVT 104 (108)
T ss_dssp SSCCEEECSC
T ss_pred CEEEEEEEcc
Confidence 9999999987
No 137
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=134.37 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=75.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. +|+|++++. |.++|||||+|.+.++|..||. +||..|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~--------~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g 78 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKE 78 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEE--------EEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEE--------EEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECC
Confidence 3468999999999999999999999999999 899999988 9999999999999999999998 99999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|.|.++.
T Consensus 79 r~l~V~~~~ 87 (103)
T 1s79_A 79 TDLLILFKD 87 (103)
T ss_dssp TTCEEEEHH
T ss_pred EEEEEEEch
Confidence 999999887
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.57 E-value=4.1e-15 Score=128.30 Aligned_cols=80 Identities=23% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCC-CcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKD-FKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~-~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
..++|||+|||.++|+++|+++|++||.|. .|+|+.+..++. ++|||||+|.+.++|..|+..|||..|.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIK--------MIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEE--------EEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 468999999999999999999999999999 799999987655 89999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|+|.+|.
T Consensus 75 ~~l~v~~a~ 83 (88)
T 4a8x_A 75 QEITATAVL 83 (88)
T ss_dssp EECEEEEEC
T ss_pred eEEEEEECC
Confidence 999999987
No 139
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.57 E-value=4.5e-15 Score=133.93 Aligned_cols=83 Identities=27% Similarity=0.303 Sum_probs=78.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 94 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 94 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34568999999999999999999999999998 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 95 g~~l~V~~a~~ 105 (110)
T 1oo0_B 95 GQTIQVDWCFV 105 (110)
T ss_dssp TEECEEEESEE
T ss_pred CcEEEEEEccc
Confidence 99999999984
No 140
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.3e-15 Score=134.39 Aligned_cols=80 Identities=23% Similarity=0.281 Sum_probs=76.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.||.++|||||+|.+.++|..||..|++ .|.|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEE--------AVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeE--------EEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 7799999999999999999999999999998 99999998899999999999999999999999998 89999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 999999874
No 141
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=7.3e-15 Score=131.81 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=77.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||..+|+++|+++|+.||.|. .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 96 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLD 96 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 45679999999999999999999999999998 79999998 7999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|+|.+|.
T Consensus 97 g~~l~V~~a~ 106 (107)
T 3ulh_A 97 GRPMNIQLVT 106 (107)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEeC
Confidence 9999999985
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=141.90 Aligned_cols=80 Identities=25% Similarity=0.371 Sum_probs=76.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..++|||+|||.++|+++|+++|+.|| .|. .|+|+.|+.+|+++|||||+|.+.++|..||..|||..|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~ 125 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVV--------ELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN 125 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 468999999999999999999999999 888 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|.|.+|.
T Consensus 126 Gr~l~V~~a~ 135 (156)
T 3n9u_C 126 GEKVDVRPAT 135 (156)
T ss_dssp TEECEEEECC
T ss_pred CeEeEEEEcC
Confidence 9999999997
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.57 E-value=1.9e-15 Score=126.43 Aligned_cols=75 Identities=23% Similarity=0.336 Sum_probs=71.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
+|||+|||.++|+++|+++|++||.|. .|+++.++.+|.++|||||+|.+.++|..|++ |||..|.|++|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~ 71 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVD--------DAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVE 71 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCS--------EECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEE
Confidence 489999999999999999999999998 79999999889999999999999999999997 999999999999
Q ss_pred EEEc
Q psy2160 582 VERA 585 (773)
Q Consensus 582 V~~a 585 (773)
|.+|
T Consensus 72 v~~A 75 (75)
T 2mss_A 72 CKKA 75 (75)
T ss_dssp EECC
T ss_pred EEeC
Confidence 9875
No 144
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-16 Score=132.29 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=75.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|++.|||..|.|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~--------~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVS--------TKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEE--------EEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 6799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
.|+|.++.
T Consensus 76 ~~~~~~~~ 83 (85)
T 1x4e_A 76 MAKQSGPS 83 (85)
T ss_dssp SCCSSCCC
T ss_pred EEeecCCC
Confidence 99886543
No 145
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=125.95 Aligned_cols=78 Identities=19% Similarity=0.286 Sum_probs=73.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.| .|.. |+|+++ .+|+++|||||+|.+.++|..||. ||+..|.|+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA--------IRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSE--------EEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceE--------EEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 67999999999999999999999999 7887 999999 559999999999999999999999 999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.+|..
T Consensus 78 ~i~v~~a~~ 86 (91)
T 2dgw_A 78 YIEVFREKS 86 (91)
T ss_dssp EEEEEEESS
T ss_pred EEEEEECCc
Confidence 999999874
No 146
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=129.19 Aligned_cols=80 Identities=21% Similarity=0.388 Sum_probs=75.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++.. + ++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------v~i~~~~~-~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER-G-SKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEE--------EEEECCTT-T-TCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCC-C-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 7799999999999999999999999999998 99999875 4 899999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 84 ~l~v~~a~~~ 93 (103)
T 2cq3_A 84 KIEVNNATAR 93 (103)
T ss_dssp ECEEEECCSS
T ss_pred EEEEEEcccC
Confidence 9999998753
No 147
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.57 E-value=3.7e-15 Score=136.33 Aligned_cols=82 Identities=21% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|..|++.|||..|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVI--------SAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEE--------EEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45678999999999999999999999999999 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|+|++++
T Consensus 109 g~~l~V~~ak 118 (118)
T 2khc_A 109 TKRLKVQLKK 118 (118)
T ss_dssp TEECCEEEC-
T ss_pred CEEEEEEecC
Confidence 9999999874
No 148
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.2e-15 Score=131.67 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=76.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC-CCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t-g~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||.++|+++|+++|+.|| |.. |+|+++..| |.++|||||+|.+.++|..|| .||+..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEE--------EECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceE--------EEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 679999999999999999999999999 887 999999987 999999999999999999999 899999999
Q ss_pred eEEEEEeeccc
Q psy2160 293 KKIKVERAKFT 303 (773)
Q Consensus 293 ~~I~V~~A~~~ 303 (773)
++|+|.+|...
T Consensus 84 ~~l~V~~a~~~ 94 (104)
T 1wi8_A 84 KRIRVDVADQA 94 (104)
T ss_dssp EECEEEECCCC
T ss_pred cEEEEEEccCC
Confidence 99999998753
No 149
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9.7e-15 Score=131.88 Aligned_cols=84 Identities=26% Similarity=0.461 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC-----
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD----- 571 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln----- 571 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|++++.+|.++|||||+|.+.++|..||..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 83 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLK--------YVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEG 83 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhcccccc
Confidence 34678999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred -CceecCeEEEEEEcccc
Q psy2160 572 -GYEIRGKKIKVERAKFT 588 (773)
Q Consensus 572 -g~~i~g~~i~V~~a~~~ 588 (773)
|..|.|+.|+|.+|...
T Consensus 84 ~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 84 GGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp CCEESSSCEEEEECCCCC
T ss_pred CCcEEcCEEEEEEECCCC
Confidence 99999999999999843
No 150
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.4e-15 Score=135.12 Aligned_cols=78 Identities=12% Similarity=0.248 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcc-cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I-~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||+++|+++|+++|+.||.| .. |+|+++. +|+++|||||+|.+.++|..||+. |+..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENA--------VHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTT--------EEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCe--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 67999999999999999999999999999 77 9999999 699999999999999999999996 9999999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
++|.|.+|.
T Consensus 84 r~i~v~~a~ 92 (114)
T 2cpy_A 84 REAFVHVVT 92 (114)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEECC
Confidence 999999886
No 151
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.4e-15 Score=132.08 Aligned_cols=78 Identities=31% Similarity=0.421 Sum_probs=74.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEE
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 295 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I 295 (773)
++|||+|||.++|+++|+++|++||.|.. |+|.+++.||.++|||||+|.+.+ |..|+..|||..|.|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFN--------VKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSE--------EEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEE--------EEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 68999999999999999999999999998 999999989999999999999999 999999999999999999
Q ss_pred EEEeecc
Q psy2160 296 KVERAKF 302 (773)
Q Consensus 296 ~V~~A~~ 302 (773)
+|.+|..
T Consensus 73 ~V~~a~~ 79 (90)
T 2ki2_A 73 RVTEANP 79 (90)
T ss_dssp SEEEC--
T ss_pred EEEEcCC
Confidence 9999874
No 152
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=132.17 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=76.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh-cCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce-ec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-IR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~-~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~-l~ 291 (773)
.+++|||+|||.++|+++|+++|++ ||.|.. |+|+++. +|.++|||||+|.+.++|..||+.||+.. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRG--------GKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEE--------EEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 6799999999999999999999999 999998 9999999 69999999999999999999999999999 99
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|.+|..
T Consensus 79 g~~l~v~~a~~ 89 (104)
T 2dhg_A 79 SKPVRLSVAIP 89 (104)
T ss_dssp SSCCCCCBCCC
T ss_pred CEeEEEEEccC
Confidence 99999998864
No 153
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=132.70 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=76.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..||.. |+..|.|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVD--------CVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEE--------EEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 7799999999999999999999999999998 99999988899999999999999999999998 99999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.+|..
T Consensus 86 ~l~V~~a~~ 94 (105)
T 2dh8_A 86 NIDPKPCTP 94 (105)
T ss_dssp EEBCCCSCC
T ss_pred EEEEEEccC
Confidence 999988764
No 154
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.56 E-value=7.9e-15 Score=131.36 Aligned_cols=84 Identities=23% Similarity=0.398 Sum_probs=78.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI- 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i- 575 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..|+..|||..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIY--------ELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL 81 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCC--------EEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc
Confidence 34678999999999999999999999999999 799999999999999999999999999999999999998
Q ss_pred --cCeEEEEEEcccc
Q psy2160 576 --RGKKIKVERAKFT 588 (773)
Q Consensus 576 --~g~~i~V~~a~~~ 588 (773)
.|++|+|.+|...
T Consensus 82 ~~~g~~l~v~~a~~~ 96 (106)
T 2dgp_A 82 PGMNRPIQVKPADSE 96 (106)
T ss_dssp TTCSSCCEEEECCCC
T ss_pred CCCCceEEEEECCcc
Confidence 8999999999843
No 155
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=130.05 Aligned_cols=85 Identities=12% Similarity=0.242 Sum_probs=78.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|.. .|+|++++.+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~-------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVM-------SVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCC-------EEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 346799999999999999999999999999862 4999999988999999999999999999999999999999
Q ss_pred CeE----EEEEEcccc
Q psy2160 577 GKK----IKVERAKFT 588 (773)
Q Consensus 577 g~~----i~V~~a~~~ 588 (773)
|+. |+|.+|...
T Consensus 79 g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 79 GATPAKRFKLNYATYS 94 (99)
T ss_dssp SCSSCEECCEEETTCC
T ss_pred CCCcceeEEEeecCCC
Confidence 998 999999843
No 156
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.3e-15 Score=131.12 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .+.++.+..+|.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCT--------TTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc--------ceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4568999999999999999999999999998 57788888889999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.++..
T Consensus 85 ~~l~V~~a~~ 94 (98)
T 2cqp_A 85 RKVKLVLGSG 94 (98)
T ss_dssp EECEEEESSC
T ss_pred eEEEEEEcCC
Confidence 9999999873
No 157
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=134.94 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecC-CCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~-~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||.++|+++|+++|+.|| |.. |+|+++. .+|+++|||||+|.+.++|..|| .|||..|.|
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~--------v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g 87 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISA--------VRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 87 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEE--------EECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 789999999999999999999999999 888 9999998 57999999999999999999999 799999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
+.|+|.+|..
T Consensus 88 ~~l~V~~a~~ 97 (100)
T 2j76_E 88 RRIRVDVADQ 97 (100)
T ss_dssp BCCCCEECCC
T ss_pred eEEEEEeccC
Confidence 9999998874
No 158
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=7.3e-15 Score=134.54 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..++|||+|||+++|+++|+++|+.||. |.. |+|+++.. |+++|||||+|.+.++|.+||+ ||+..|
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAG--------VHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGG--------EEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCcee--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 6799999999999999999999999999 777 99999998 9999999999999999999999 999999
Q ss_pred cCeEEEEEeec
Q psy2160 291 RGKKIKVERAK 301 (773)
Q Consensus 291 ~g~~I~V~~A~ 301 (773)
.|+.|+|..|.
T Consensus 86 ~gr~i~V~~a~ 96 (118)
T 2db1_A 86 GHRYIEVFKSH 96 (118)
T ss_dssp TTEEEEEEEEC
T ss_pred CCeEEEEEECC
Confidence 99999998875
No 159
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.56 E-value=8.1e-15 Score=127.65 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=75.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|.++ +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~--------~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLY--------ADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEE--------EEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 7799999999999999999999999999998 999884 599999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.++..
T Consensus 77 ~l~v~~a~~ 85 (92)
T 2dgv_A 77 EIDVRIDRN 85 (92)
T ss_dssp CCCCEECSC
T ss_pred EEEEEEcCC
Confidence 999999874
No 160
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=133.91 Aligned_cols=82 Identities=26% Similarity=0.360 Sum_probs=77.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .|.|+.+. +|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPIS--------EVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCS--------EEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578999999999999999999999999998 79999998 79999999999999999999999999999999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
+.|.|.+|+..
T Consensus 76 ~~l~V~~a~~~ 86 (116)
T 2fy1_A 76 KAIKVEQAKKP 86 (116)
T ss_dssp SBCEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999999843
No 161
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=6.2e-15 Score=125.44 Aligned_cols=74 Identities=20% Similarity=0.312 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.++.|||+||++.+|+++|+++|++||+|.. ++|+. ++|||||+|.++++|..|++.||+..+.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~--------~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVS--------FHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEE--------EEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 6789999999999999999999999999998 88864 689999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|..|.
T Consensus 72 ~I~V~~A~ 79 (89)
T 2wbr_A 72 TIFAESPS 79 (89)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99998885
No 162
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.7e-15 Score=129.54 Aligned_cols=78 Identities=26% Similarity=0.261 Sum_probs=74.2
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
.+++|||+|||.++|+++|+ ++|++||.|.. |+|+++.. + +|||||+|.+.++|..||+.|||..
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~--------v~i~~~~~-~--rg~afV~f~~~~~A~~Ai~~l~g~~ 76 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKS--------VELSPHTD-Y--QLKAVVQMENLQDAIGAVNSLHRYK 76 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECSCCS-T--TCCEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEE--------EEEEeCCC-C--CeEEEEEECCHHHHHHHHHHhCCCE
Confidence 77999999999999999999 99999999998 99999987 4 8999999999999999999999999
Q ss_pred ecCeEEEEEeecc
Q psy2160 290 IRGKKIKVERAKF 302 (773)
Q Consensus 290 l~g~~I~V~~A~~ 302 (773)
|.|++|+|.+|+.
T Consensus 77 ~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 77 IGSKKILVSLATG 89 (96)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCeEEEEEEcCC
Confidence 9999999999874
No 163
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=3.6e-15 Score=130.75 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .+.++.++.+|.++|||||+|.++++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIP--------GSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCT--------TCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3468999999999999999999999999998 68888888889999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
++|+|.++.
T Consensus 85 r~l~v~~a~ 93 (95)
T 2ek1_A 85 RKVKLSGPS 93 (95)
T ss_dssp EECEEECCC
T ss_pred cEEEEEecc
Confidence 999999876
No 164
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=128.39 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++.. .++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKS--------CKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeE--------EEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 6799999999999999999999999999998 99999865 3699999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 84 ~l~V~~a~~ 92 (103)
T 2cqi_A 84 EVKVNWATT 92 (103)
T ss_dssp EEEEEECCC
T ss_pred eEEEEECCC
Confidence 999999874
No 165
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.56 E-value=4.6e-15 Score=138.10 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=77.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++++.||.++|||||+|.+.++|..||..||+..|.|+
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIAD--------VSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEE--------EEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 6799999999999999999999999999998 99999998899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 117 ~l~V~~a~~ 125 (129)
T 2kxn_B 117 RIRVDFSIT 125 (129)
T ss_dssp CCEESCCSS
T ss_pred EEEEEEecC
Confidence 999988763
No 166
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-15 Score=125.63 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=72.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++|||+|||.++|+++|+++|++||.|. .|.++.++.+|.++|||||+|.+.++|..|+..++ ..+.|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l 71 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTI 71 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCC--------CEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEE
Confidence 4799999999999999999999999998 79999999889999999999999999999999999 99999999
Q ss_pred EEEEc
Q psy2160 581 KVERA 585 (773)
Q Consensus 581 ~V~~a 585 (773)
.|.+|
T Consensus 72 ~v~~a 76 (77)
T 1uaw_A 72 DPKVA 76 (77)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 99987
No 167
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.56 E-value=9.6e-15 Score=124.26 Aligned_cols=74 Identities=19% Similarity=0.306 Sum_probs=69.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
....|||+||++.+|+++|+++|.+||+|. +++++. ++|||||+|.++++|..|++.|||..+.|+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~--------~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr 71 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLV--------SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANT 71 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEE--------EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 468999999999999999999999999999 788864 599999999999999999999999999999
Q ss_pred EEEEEEcc
Q psy2160 579 KIKVERAK 586 (773)
Q Consensus 579 ~i~V~~a~ 586 (773)
+|+|..|.
T Consensus 72 ~I~V~~A~ 79 (89)
T 2wbr_A 72 TIFAESPS 79 (89)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99999985
No 168
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.9e-15 Score=131.91 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=78.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEec-CCCCCCcceEEEEeCChHHHHHHHHHh-CCce
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTD-PYTKDFKGDALCTYIKKESVDLALSIL-DGYE 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d-~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~ 574 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+ ..+|.++|||||+|.+.++|.+||..| ||..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 83 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELK--------TVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTH 83 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeE--------EEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCe
Confidence 34679999999999999999999999999999 7999999 678999999999999999999999999 9999
Q ss_pred ecCeEEEEEEcccc
Q psy2160 575 IRGKKIKVERAKFT 588 (773)
Q Consensus 575 i~g~~i~V~~a~~~ 588 (773)
|.|+.|+|.+|...
T Consensus 84 ~~g~~l~v~~a~~~ 97 (107)
T 2cph_A 84 LYGRRLVLEWADSE 97 (107)
T ss_dssp SSSCBCEEEECCCC
T ss_pred ECCCEEEEEeCCCC
Confidence 99999999999843
No 169
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=6.1e-15 Score=133.05 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=74.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|+++..||.++|||||+|.+.++|..||..+ +..|.|+
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKE--------CLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEE--------EEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEE--------EEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 7799999999999999999999999999998 999999989999999999999999999999966 5899999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 95 ~l~V~~a~~ 103 (109)
T 2rs2_A 95 TIDPKVAFP 103 (109)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999998863
No 170
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.55 E-value=1.5e-14 Score=139.13 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=78.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|.++|++||.|.. |+|+++..||.++|||||+|.+.++|..||..||+..|.|+
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKK--------IIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 6799999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 110 ~l~V~~a~~ 118 (156)
T 1h2v_Z 110 IIRTDWDAG 118 (156)
T ss_dssp ECEEEEESC
T ss_pred EEEEEECCC
Confidence 999999874
No 171
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=6.2e-15 Score=136.44 Aligned_cols=81 Identities=23% Similarity=0.341 Sum_probs=78.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|.++|++||.|.. |.|+.+..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKN--------IHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 6799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.+|..
T Consensus 93 ~l~v~~a~~ 101 (126)
T 3ex7_B 93 PISVDWCFV 101 (126)
T ss_dssp BCEEEESEE
T ss_pred EEEEEEecC
Confidence 999999874
No 172
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.3e-14 Score=127.76 Aligned_cols=79 Identities=25% Similarity=0.254 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 498 QENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
...++|||+|||.++|+++|+ ++|++||.|. .|+|+.++.+ +|||||+|.+.++|..|+..|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~--------~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVK--------SVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEE--------EEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 356899999999999999999 9999999999 7999999864 899999999999999999999999
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|++|+|.+|+.
T Consensus 76 ~~~gr~l~V~~a~~ 89 (96)
T 2dgx_A 76 KIGSKKILVSLATG 89 (96)
T ss_dssp EETTEEEEEEECCC
T ss_pred EECCeEEEEEEcCC
Confidence 99999999999974
No 173
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=129.00 Aligned_cols=81 Identities=23% Similarity=0.390 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.|| |. .|+|+++..+|.++|||||+|.+.++|..|+ .|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 81 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR--------SVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG 81 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce--------EEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC
Confidence 34578999999999999999999999998 77 7999999999999999999999999999999 89999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2dng_A 82 DRSLRVDIAEG 92 (103)
T ss_dssp TEECEEEECCC
T ss_pred CeEEEEEEecC
Confidence 99999999984
No 174
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.55 E-value=9.9e-15 Score=130.48 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .|+|+.++ +|.++|||||+|.+.++|..||..|||..+.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVID--------ECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 4579999999999999999999999999999 79999998 59999999999999999999999999999998
Q ss_pred ---eEEEEEEccc
Q psy2160 578 ---KKIKVERAKF 587 (773)
Q Consensus 578 ---~~i~V~~a~~ 587 (773)
++|+|.+|..
T Consensus 84 g~~~~l~V~~a~~ 96 (105)
T 2dnh_A 84 GASSSLVVKFADT 96 (105)
T ss_dssp TCSSCCEEEESCS
T ss_pred CCCccEEEEECcc
Confidence 9999999984
No 175
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7.7e-15 Score=135.55 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=73.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|+.||.|.. +.++.+..+|+++|||||+|.+.++|..||. ||+..|.|+
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--------~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVED--------SIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTT--------TCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccc--------eEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 6799999999999999999999999999987 5666666679999999999999999999999 999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|.|.+|.
T Consensus 95 ~i~V~~a~ 102 (124)
T 1wel_A 95 FIQVHPIT 102 (124)
T ss_dssp CBEEEEEC
T ss_pred EEEEEECC
Confidence 99999886
No 176
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.7e-14 Score=131.56 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=78.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|.+||..|++ .|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~ 84 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIE--------EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID 84 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCee--------EEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC
Confidence 44679999999999999999999999999998 799999998999999999999999999999999998 899
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 85 g~~l~V~~a~~~ 96 (116)
T 2cqd_A 85 GRKANVNLAYLG 96 (116)
T ss_dssp TEECEEEESTTT
T ss_pred CEEEEEEEcccC
Confidence 999999999743
No 177
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.55 E-value=1.1e-14 Score=141.40 Aligned_cols=83 Identities=27% Similarity=0.303 Sum_probs=78.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||..+|+++|+.+|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 140 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIK--------NIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM 140 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEE--------EEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578999999999999999999999999999 7999999989999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|.|.+|..
T Consensus 141 g~~l~V~~a~~ 151 (165)
T 1rk8_A 141 GQTIQVDWCFV 151 (165)
T ss_dssp TEECEEEESEE
T ss_pred CEEEEEEEecC
Confidence 99999999984
No 178
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.8e-15 Score=125.30 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCeEEE
Q psy2160 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 296 (773)
Q Consensus 217 ~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~~I~ 296 (773)
+|||+|||.++|+++|+++|++||.|.. |.+++++.+|.++|||||+|.+.++|..|++ +++..|.|++|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVES--------IELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSE--------ECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 5999999999999999999999999998 9999999889999999999999999999998 588999999999
Q ss_pred EEee
Q psy2160 297 VERA 300 (773)
Q Consensus 297 V~~A 300 (773)
|.+|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9765
No 179
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=132.29 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=75.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. .|+|+.+..+|.++|||||+|.+.++|..|| .|||..|.|+.
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 95 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVR--------DVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVP 95 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEe--------EEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeE
Confidence 48999999999999999999999999999 7999999999999999999999999999999 99999999999
Q ss_pred EEEEEcc
Q psy2160 580 IKVERAK 586 (773)
Q Consensus 580 i~V~~a~ 586 (773)
|+|.+|.
T Consensus 96 l~V~~a~ 102 (114)
T 2cq4_A 96 IIVQASQ 102 (114)
T ss_dssp EEEEEHH
T ss_pred EEEEecC
Confidence 9999998
No 180
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.55 E-value=7.5e-15 Score=137.61 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=74.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..++|||+|||+++|+++|+++|+.||. |.. |+|++|+. |+++|||||+|.+.++|.+||+ ||+..|
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~--------v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAG--------VHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTT--------EEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 6799999999999999999999999999 777 99999998 9999999999999999999999 999999
Q ss_pred cCeEEEEEeec
Q psy2160 291 RGKKIKVERAK 301 (773)
Q Consensus 291 ~g~~I~V~~A~ 301 (773)
.|++|.|..|.
T Consensus 113 ~gr~i~V~~a~ 123 (136)
T 2hgl_A 113 GHRYIEVFKSH 123 (136)
T ss_dssp SSSEEEEEECC
T ss_pred CCEEEEEEECC
Confidence 99999998875
No 181
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=131.45 Aligned_cols=80 Identities=29% Similarity=0.510 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVV--------SFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCS--------EEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCee--------EEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 58999999999999999999999999998 7999999888999999999999999999999999999999999
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
|+|.+|..
T Consensus 80 l~v~~a~~ 87 (104)
T 1p1t_A 80 LRVDNAAS 87 (104)
T ss_dssp BEEEETTC
T ss_pred EEEEeCCC
Confidence 99999983
No 182
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.1e-15 Score=130.07 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC--Cceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~l~ 291 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||+.|+ +..|.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 7899999999999999999999999999998 999864 6899999999999999999876 47899
Q ss_pred CeEEEEEeeccc
Q psy2160 292 GKKIKVERAKFT 303 (773)
Q Consensus 292 g~~I~V~~A~~~ 303 (773)
|++|+|.+|+.+
T Consensus 81 Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 81 GQPIYIQFSNHK 92 (105)
T ss_dssp TEECCBCCCSSS
T ss_pred CEEEEEEEcCCC
Confidence 999999998743
No 183
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=127.66 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.+.. .++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCK--------SCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKIL 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEe--------EEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcC
Confidence 34679999999999999999999999999999 799999975 36999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2cqi_A 82 GKEVKVNWATT 92 (103)
T ss_dssp TEEEEEEECCC
T ss_pred CCeEEEEECCC
Confidence 99999999984
No 184
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4e-14 Score=126.11 Aligned_cols=79 Identities=19% Similarity=0.252 Sum_probs=74.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|++++.||.++|||||+|.+.++|..||. ++..|.|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~ 83 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLM--------VQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR 83 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEE--------EEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe
Confidence 6799999999999999999999999999998 9999999889999999999999999999998 47789999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.++..
T Consensus 84 ~l~v~~a~~ 92 (103)
T 2cqg_A 84 WCDCKLPNS 92 (103)
T ss_dssp EEEEECCCT
T ss_pred EEEEEecCC
Confidence 999999874
No 185
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=2.1e-14 Score=135.25 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+.++|..||+.||+..|.|+
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITD--------IQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 7899999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEee
Q psy2160 294 KIKVERA 300 (773)
Q Consensus 294 ~I~V~~A 300 (773)
+|+|.+|
T Consensus 134 ~l~v~~A 140 (140)
T 2ku7_A 134 TIRVNLA 140 (140)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 9999875
No 186
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.6e-15 Score=130.76 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|+.||++ . |+|++++ +|+++|||||+|.+.++|.+||+ +|+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~--------v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-R--------VHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-E--------EEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-E--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 67999999999999999999999999965 5 9999998 59999999999999999999996 799999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
.|.|..+..
T Consensus 83 ~i~V~~~~~ 91 (102)
T 1wez_A 83 YVELFLNST 91 (102)
T ss_dssp CCEEEEECC
T ss_pred EEEEEECCC
Confidence 999988764
No 187
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.1e-14 Score=134.31 Aligned_cols=80 Identities=28% Similarity=0.477 Sum_probs=76.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|++++.+|.++|||||+|.+.++|..|| .|||..|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 105 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINR--------ITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR 105 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEE--------EEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 5799999999999999999999999999998 999999888999999999999999999999 6999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+++.
T Consensus 106 ~l~V~~a~~ 114 (124)
T 2jwn_A 106 TIKVLPKRT 114 (124)
T ss_dssp ECEEEESSC
T ss_pred EEEEEECCC
Confidence 999999874
No 188
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=129.52 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=77.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++. |.++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV--------RADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLF 82 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34578999999999999999999999999999 799999985 899999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.++...
T Consensus 83 g~~l~v~~a~~~ 94 (114)
T 2do0_A 83 DRPMHVKMDERA 94 (114)
T ss_dssp TEECEEEECSCC
T ss_pred CCEEEEEEcccC
Confidence 999999999743
No 189
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-15 Score=130.28 Aligned_cols=81 Identities=17% Similarity=0.282 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.+.++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~--------~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIV--------STKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEE--------EEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee
Confidence 4578999999999999999999999999999 89999999889999999999999999999999999999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|+|+++.
T Consensus 75 ~~~~~~~~~ 83 (85)
T 1x4e_A 75 QMAKQSGPS 83 (85)
T ss_dssp ESCCSSCCC
T ss_pred EEEeecCCC
Confidence 999887654
No 190
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.8e-15 Score=132.79 Aligned_cols=83 Identities=20% Similarity=0.300 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHH---HHHhhcCcccccccCCceeEEEEecCCCC---CcceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~---~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg---~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
..++|||+|||+++|+++|+ ++|++||.|.. |+|.++..+| .++|||||+|.+.++|..||+.||+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~--------v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHK--------VVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEE--------EEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEE--------EEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 67899999999999999999 99999999998 9999988644 5669999999999999999999999
Q ss_pred ceecCeEEEEEeecccc
Q psy2160 288 YEIRGKKIKVERAKFTM 304 (773)
Q Consensus 288 ~~l~g~~I~V~~A~~~~ 304 (773)
..|.|++|+|.+|....
T Consensus 86 ~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 86 VVVDGRTLKASLGTTKY 102 (111)
T ss_dssp EEETTEEEEEESCCCCS
T ss_pred CEECCEEEEEEeccccc
Confidence 99999999999988543
No 191
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=130.64 Aligned_cols=79 Identities=22% Similarity=0.406 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+++.. .++|||||+|.+.++|..|+..|||..|.|+
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILD--------VEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSC--------EEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEE--------EEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 7799999999999999999999999999998 99999864 5899999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 98 ~l~V~~a~~ 106 (109)
T 2err_A 98 KIEVNNATA 106 (109)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999863
No 192
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=131.78 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc-ccccccCCceeEEEE-ecCCCCCcceEEEEEecChHHHHHHHHHcC--Cce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILD--GYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~-I~~~~~~~~p~i~l~-~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~ 289 (773)
.+++|||+|||.++|+++|+++|++||. |.. |.|+ .+..||.++|||||+|.+.++|..||..|| +..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~--------v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~ 78 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLD--------VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 78 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEE--------EECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceE--------EEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCce
Confidence 6799999999999999999999999998 988 8988 788889999999999999999999999996 589
Q ss_pred ecCeEEEEEeeccc
Q psy2160 290 IRGKKIKVERAKFT 303 (773)
Q Consensus 290 l~g~~I~V~~A~~~ 303 (773)
|.|++|+|.+|...
T Consensus 79 ~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 79 LWGHQIAVDWAEPE 92 (109)
T ss_dssp BTTBCCEEEESCSS
T ss_pred ecCCeEEEEEcCCC
Confidence 99999999998743
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.2e-14 Score=129.69 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-CCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++|||+|||.++|+++|+++|+.|| |. .|+|+.++.+ |.++|||||+|.+.++|.+|| .|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~ 82 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG 82 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EE--------EEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ce--------EEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC
Confidence 4568999999999999999999999999 87 7999999987 899999999999999999999 99999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|.|.+|...
T Consensus 83 g~~l~V~~a~~~ 94 (104)
T 1wi8_A 83 NKRIRVDVADQA 94 (104)
T ss_dssp TEECEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999999843
No 194
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=127.18 Aligned_cols=73 Identities=18% Similarity=0.210 Sum_probs=67.8
Q ss_pred ccEEEEcCCCCCC------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc
Q psy2160 215 STKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 288 (773)
Q Consensus 215 ~~~VyV~nLP~~~------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~ 288 (773)
+++|||+|||.++ |+++|+++|++||.|.. |+|. ..||+++|||||+|.+.++|..||..|||.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~--------v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEE--------EECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEE--------EEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 4799999999999 78999999999999998 8887 346999999999999999999999999999
Q ss_pred eecCe-EEEE
Q psy2160 289 EIRGK-KIKV 297 (773)
Q Consensus 289 ~l~g~-~I~V 297 (773)
.|.|+ +|+|
T Consensus 71 ~~~g~~~l~V 80 (81)
T 2krb_A 71 KLDKQHTFRV 80 (81)
T ss_dssp CCSSSSCCCC
T ss_pred ccCCceeEEe
Confidence 99999 8887
No 195
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=129.92 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=77.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.+ +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 81 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTIT--------SAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVA 81 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEE--------EEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34679999999999999999999999999999 7999998 5899999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|.|.+|...
T Consensus 82 g~~l~V~~a~~~ 93 (103)
T 2d9p_A 82 TKPLYVALAQRK 93 (103)
T ss_dssp SSBCEEEECSSC
T ss_pred CcEEEEEEeccc
Confidence 999999999843
No 196
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=4.5e-15 Score=138.55 Aligned_cols=81 Identities=22% Similarity=0.268 Sum_probs=76.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcc--cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc---
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV--MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--- 288 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I--~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--- 288 (773)
.+++|||+|||+++|+++|+++|++||.| .. |+|++|+.||+++|||||+|.+. +|..||..||+.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~--------v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSN--------VRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTT--------EECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceee--------EEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 67899999999999999999999999999 44 89999998899999999999999 999999999999
Q ss_pred -eecCeEEEEEeeccc
Q psy2160 289 -EIRGKKIKVERAKFT 303 (773)
Q Consensus 289 -~l~g~~I~V~~A~~~ 303 (773)
.|.|++|+|.+|...
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999998753
No 197
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=7.3e-15 Score=131.58 Aligned_cols=78 Identities=17% Similarity=0.170 Sum_probs=72.9
Q ss_pred CccEEEEcCCCCCC------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
.+++|||+|||..+ |+++|+++|++||.|.. |+|+ ..||+++|||||+|.+.++|..||..|||
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~--------v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g 83 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITN--------DFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADG 83 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEE--------EECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEE--------EEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 57899999999999 78999999999999998 8888 35699999999999999999999999999
Q ss_pred ceecCe-EEEEEeec
Q psy2160 288 YEIRGK-KIKVERAK 301 (773)
Q Consensus 288 ~~l~g~-~I~V~~A~ 301 (773)
..|.|+ +|+|.+|.
T Consensus 84 ~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 84 YKLDKQHTFRVNLFT 98 (105)
T ss_dssp EECSTTCEEEEECSC
T ss_pred cccCCCceEEEEEcc
Confidence 999998 99999876
No 198
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.54 E-value=4.5e-15 Score=138.15 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=79.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..+.++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~ 114 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIA--------DVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD 114 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEE--------EEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 45678999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|.|.+|..
T Consensus 115 g~~l~V~~a~~ 125 (129)
T 2kxn_B 115 GRRIRVDFSIT 125 (129)
T ss_dssp SSCCEESCCSS
T ss_pred CEEEEEEEecC
Confidence 99999999873
No 199
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=6.5e-15 Score=131.44 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHh-cCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce-
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQK-CGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE- 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~-~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~- 574 (773)
....++|||+|||.++|+++|+++|+. ||.|. .|+|+.+. +|.++|||||+|.+.++|..|+..|||..
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 76 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCR--------GGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVG 76 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEE--------EEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcc
Confidence 346789999999999999999999999 99998 79999998 79999999999999999999999999999
Q ss_pred ecCeEEEEEEccc
Q psy2160 575 IRGKKIKVERAKF 587 (773)
Q Consensus 575 i~g~~i~V~~a~~ 587 (773)
|.|++|+|.+|..
T Consensus 77 ~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 77 LGSKPVRLSVAIP 89 (104)
T ss_dssp SSSSCCCCCBCCC
T ss_pred cCCEeEEEEEccC
Confidence 9999999999974
No 200
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=128.27 Aligned_cols=78 Identities=17% Similarity=0.291 Sum_probs=71.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cce
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYE 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~~ 574 (773)
+.+.++|||+|||.++|+++|+++|++||.|. +|+|+++ +|||||+|.+.++|..|++.|+ +..
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~ 78 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 78 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 45679999999999999999999999999999 7999865 7999999999999999999886 478
Q ss_pred ecCeEEEEEEcccc
Q psy2160 575 IRGKKIKVERAKFT 588 (773)
Q Consensus 575 i~g~~i~V~~a~~~ 588 (773)
|.|++|+|.+|+..
T Consensus 79 l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 79 LRGQPIYIQFSNHK 92 (105)
T ss_dssp ETTEECCBCCCSSS
T ss_pred ECCEEEEEEEcCCC
Confidence 99999999999843
No 201
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=131.86 Aligned_cols=81 Identities=21% Similarity=0.352 Sum_probs=77.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|++++.||.++|||||+|.+.++|..||.. ++..|.|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTD--------CVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSE--------EEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 6799999999999999999999999999998 99999998899999999999999999999996 99999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 97 ~l~V~~a~~~ 106 (116)
T 1x4b_A 97 VVEPKRAVAR 106 (116)
T ss_dssp EEEEECCSSC
T ss_pred EEEEEECCCC
Confidence 9999998743
No 202
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=135.74 Aligned_cols=84 Identities=19% Similarity=0.348 Sum_probs=79.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|++++.+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 110 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIE--------SVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEE--------EEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578999999999999999999999999999 7999999988999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 111 g~~l~v~~a~~~ 122 (139)
T 1u6f_A 111 NKRLKVALAASG 122 (139)
T ss_dssp SCEEEEEESSCC
T ss_pred CeEEEEEECCCC
Confidence 999999999843
No 203
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.53 E-value=1.2e-14 Score=134.52 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 90 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIK--------NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM 90 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34578999999999999999999999999998 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|.|.+|...
T Consensus 91 g~~l~v~~a~~~ 102 (126)
T 3ex7_B 91 GQPISVDWCFVR 102 (126)
T ss_dssp SSBCEEEESEES
T ss_pred CeEEEEEEecCC
Confidence 999999999843
No 204
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=1.8e-14 Score=125.42 Aligned_cols=80 Identities=21% Similarity=0.449 Sum_probs=75.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+++ +|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 75 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVL--------YADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSG 75 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEE--------EEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4678999999999999999999999999999 7999885 58899999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.+++.
T Consensus 76 ~~l~v~~a~~ 85 (92)
T 2dgv_A 76 REIDVRIDRN 85 (92)
T ss_dssp BCCCCEECSC
T ss_pred cEEEEEEcCC
Confidence 9999999984
No 205
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=123.43 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.| .|. .|+|+++ .+|+++|||||+|.+.++|..|+. |||..|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~--------~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPV--------AIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCS--------EEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cce--------EEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 457899999999999999999999999 777 7999999 569999999999999999999999 99999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.|.+|..
T Consensus 77 r~i~v~~a~~ 86 (91)
T 2dgw_A 77 RYIEVFREKS 86 (91)
T ss_dssp EEEEEEEESS
T ss_pred cEEEEEECCc
Confidence 9999999984
No 206
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.6e-14 Score=125.66 Aligned_cols=82 Identities=21% Similarity=0.377 Sum_probs=76.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+.. .++|||||+|.+.++|..|+..|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~--------~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 81 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVE 81 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEE--------EEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44679999999999999999999999999999 799999875 38999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 82 g~~l~v~~a~~~ 93 (103)
T 2cq3_A 82 GRKIEVNNATAR 93 (103)
T ss_dssp TEECEEEECCSS
T ss_pred CEEEEEEEcccC
Confidence 999999999843
No 207
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.53 E-value=3.3e-15 Score=129.69 Aligned_cols=78 Identities=31% Similarity=0.421 Sum_probs=74.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.+ |..|+..|||..+.|++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l 72 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVF--------NVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTI 72 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCS--------EEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEE--------EEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEE
Confidence 6899999999999999999999999999 7999999989999999999999999 999999999999999999
Q ss_pred EEEEccc
Q psy2160 581 KVERAKF 587 (773)
Q Consensus 581 ~V~~a~~ 587 (773)
+|.+|..
T Consensus 73 ~V~~a~~ 79 (90)
T 2ki2_A 73 RVTEANP 79 (90)
T ss_dssp SEEEC--
T ss_pred EEEEcCC
Confidence 9999984
No 208
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.53 E-value=2.6e-14 Score=131.92 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=77.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 102 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD 102 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCS--------EEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34678999999999999999999999999998 79999998 7999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 103 g~~l~V~~a~~ 113 (124)
T 2kt5_A 103 GRPMDIQLVAS 113 (124)
T ss_dssp SCEEEEEEECC
T ss_pred CcEEEEEEeCC
Confidence 99999999984
No 209
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=6.5e-16 Score=141.01 Aligned_cols=89 Identities=29% Similarity=0.444 Sum_probs=84.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|..+...+.|.|+|++++.+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 67999999999999999999999999999887777888899999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 86 ~l~V~~a~~ 94 (116)
T 2lcw_A 86 PIKVSFATR 94 (116)
Confidence 999998873
No 210
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=127.13 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce--ec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE--IR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~--l~ 291 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|++ .||||||+|.+.++|..|++.|++.. |.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISY--------VVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 6789999999999999999999999999998 88874 36899999999999999999999876 78
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|++|+.
T Consensus 86 Gr~i~V~~S~~ 96 (100)
T 3r27_A 86 GHPAFVNYSTS 96 (100)
T ss_dssp TEEEEEEECSC
T ss_pred CcEEEEEeccc
Confidence 99999999874
No 211
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.53 E-value=1.9e-14 Score=129.88 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+++..+|.++|||||+|.+.++|..||..+ |..|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~ 92 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVK--------ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD 92 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEE--------EEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeE--------EEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC
Confidence 44678999999999999999999999999999 7999999999999999999999999999999876 59999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|..
T Consensus 93 g~~l~V~~a~~ 103 (109)
T 2rs2_A 93 SKTIDPKVAFP 103 (109)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999983
No 212
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=128.03 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=73.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|+.||.|... |+|+.+ .+|+++|||||+|.+.++|..||.. |+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~-------v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNG-------MTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEE-------EECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccee-------EEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 67999999999999999999999999999753 788888 5599999999999999999999996 99999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
.|.|..+..
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 999988764
No 213
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.53 E-value=2.4e-14 Score=126.08 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=70.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce--
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE-- 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~-- 574 (773)
..++++|||+|||.++|+++|+++|++||.|. +|+|++ .+|+|||+|.+.++|..|++.|+|..
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPIS--------YVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCce
Confidence 45678999999999999999999999999999 788874 37899999999999999999999876
Q ss_pred ecCeEEEEEEccc
Q psy2160 575 IRGKKIKVERAKF 587 (773)
Q Consensus 575 i~g~~i~V~~a~~ 587 (773)
|.|++|.|++|+.
T Consensus 84 i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 84 IAGHPAFVNYSTS 96 (100)
T ss_dssp ETTEEEEEEECSC
T ss_pred eCCcEEEEEeccc
Confidence 7899999999983
No 214
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.3e-14 Score=129.73 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..||.. |+..|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVV--------DCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEE--------EEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 34679999999999999999999999999999 799999998899999999999999999999988 999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|..
T Consensus 84 g~~l~V~~a~~ 94 (105)
T 2dh8_A 84 GRNIDPKPCTP 94 (105)
T ss_dssp TEEEBCCCSCC
T ss_pred CEEEEEEEccC
Confidence 99999999984
No 215
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=135.04 Aligned_cols=81 Identities=21% Similarity=0.301 Sum_probs=76.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|++++.+|.++|||||+|.+.++|.+|++.|||..|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 131 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDIT--------DIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF 131 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44679999999999999999999999999999 7999999888999999999999999999999999999999
Q ss_pred CeEEEEEEc
Q psy2160 577 GKKIKVERA 585 (773)
Q Consensus 577 g~~i~V~~a 585 (773)
|++|+|.+|
T Consensus 132 g~~l~v~~A 140 (140)
T 2ku7_A 132 GRTIRVNLA 140 (140)
T ss_dssp TEEEEEEC-
T ss_pred CEEEEEEeC
Confidence 999999976
No 216
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.5e-14 Score=131.53 Aligned_cols=79 Identities=11% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcc-eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLV-MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I-~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++|||+|||.++|+++|+++|+.||.| . .|+|++|. +|+++|||||+|.+.++|.+||.. |+..|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~ 82 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDEN--------AVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLN 82 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCST--------TEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEET
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCC--------eEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccC
Confidence 456899999999999999999999999999 6 69999998 799999999999999999999976 999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|.|.+|.
T Consensus 83 gr~i~v~~a~ 92 (114)
T 2cpy_A 83 GREAFVHVVT 92 (114)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999999998
No 217
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=3.3e-14 Score=136.71 Aligned_cols=83 Identities=22% Similarity=0.341 Sum_probs=79.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 107 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIK--------KIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD 107 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34679999999999999999999999999999 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 108 g~~l~V~~a~~ 118 (156)
T 1h2v_Z 108 DRIIRTDWDAG 118 (156)
T ss_dssp TEECEEEEESC
T ss_pred CeEEEEEECCC
Confidence 99999999984
No 218
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=3.5e-14 Score=128.78 Aligned_cols=88 Identities=27% Similarity=0.402 Sum_probs=81.7
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ 425 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G 425 (773)
+..+++|+|+||+++.++ .++++..+|+++|+++|++||.|.+|.+....++|++||.|.+.++|.+|+..|||++|+|
T Consensus 4 p~ps~vv~L~Nm~~~~e~-~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTE-EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTC-CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHc-cChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456889999999999885 6788999999999999999999999999877789999999999999999999999999999
Q ss_pred eeEEEEecC
Q psy2160 426 RQITAETWD 434 (773)
Q Consensus 426 r~I~v~~~~ 434 (773)
|.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999874
No 219
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.52 E-value=2.7e-14 Score=138.76 Aligned_cols=81 Identities=27% Similarity=0.312 Sum_probs=77.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||..+|+++|.++|++||.|.. |.|+++..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 142 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKN--------IHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ 142 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEE--------EEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 6789999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.+|..
T Consensus 143 ~l~V~~a~~ 151 (165)
T 1rk8_A 143 TIQVDWCFV 151 (165)
T ss_dssp ECEEEESEE
T ss_pred EEEEEEecC
Confidence 999999874
No 220
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=129.16 Aligned_cols=80 Identities=21% Similarity=0.423 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+.+. +.++|||||+|.+.++|.+|+..|||..|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~ 95 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKIL--------DVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVE 95 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCS--------CEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEE--------EEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45679999999999999999999999999998 79999986 448999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|+|.+|+
T Consensus 96 g~~l~V~~a~ 105 (109)
T 2err_A 96 GRKIEVNNAT 105 (109)
T ss_dssp TEECEEEECC
T ss_pred CEEEEEEECC
Confidence 9999999987
No 221
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.52 E-value=1.8e-14 Score=130.09 Aligned_cols=76 Identities=24% Similarity=0.354 Sum_probs=70.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||+++|+++|+++|++|| .|.. |.|+. +.++|||||+|.+.++|..||+.|||..|.|
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~--------v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTF--------SSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE--------EECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE--------EEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 679999999999999999999999999 8887 77753 4578999999999999999999999999999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
++|+|..+.
T Consensus 95 r~i~V~~a~ 103 (111)
T 2jvr_A 95 SVITVERDD 103 (111)
T ss_dssp EEEEEEESC
T ss_pred eEEEEEECC
Confidence 999998876
No 222
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=2.1e-14 Score=160.73 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||..+|+++|.++|+.||.|. .|.|+.+..+|.++|||||+|.+.++|..||..|||..|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~--------~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIK--------RIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 4568999999999999999999999999999 79999998889999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.|.+|..
T Consensus 172 r~i~V~~a~~ 181 (437)
T 3pgw_S 172 RRVLVDVERG 181 (437)
T ss_pred EEEEEEEeCC
Confidence 9999999984
No 223
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=128.31 Aligned_cols=75 Identities=24% Similarity=0.282 Sum_probs=70.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++|||+|||.++|+++|+++|++||.|. .|.|+.+ ++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 67 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLR--------TVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRV 67 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCS--------EEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEE
Confidence 5899999999999999999999999998 7999877 58999999999999999999999999999999
Q ss_pred EEEEcccc
Q psy2160 581 KVERAKFT 588 (773)
Q Consensus 581 ~V~~a~~~ 588 (773)
+|.+|+..
T Consensus 68 ~V~~a~~~ 75 (101)
T 2hvz_A 68 RVELSTGM 75 (101)
T ss_dssp EEEESSSC
T ss_pred EEEEccCC
Confidence 99999843
No 224
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=129.16 Aligned_cols=77 Identities=16% Similarity=0.227 Sum_probs=72.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|+.| .|.. |+|++|+. |+++|||||+|.+.++|.+|| .+|+..|.|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~--------v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDA--------VHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCE--------EEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeE--------EEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 67899999999999999999999999 6776 99999988 999999999999999999999 5999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
.|.|..|.
T Consensus 84 ~i~V~~a~ 91 (109)
T 2dnn_A 84 YVEVSPAT 91 (109)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
Confidence 99998775
No 225
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.52 E-value=6.2e-15 Score=137.60 Aligned_cols=85 Identities=22% Similarity=0.272 Sum_probs=77.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc---
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--- 573 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~--- 573 (773)
....++|||+|||.++|+++|+++|++||.|... +|+|++|+.+|+++|||||+|.+. +|..|+..|||.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~------~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSS------NVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT------TEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee------eEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 3467899999999999999999999999999611 399999999999999999999999 999999999999
Q ss_pred -eecCeEEEEEEcccc
Q psy2160 574 -EIRGKKIKVERAKFT 588 (773)
Q Consensus 574 -~i~g~~i~V~~a~~~ 588 (773)
.|.|+.|.|.+|...
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 999999999999843
No 226
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=8.5e-15 Score=122.37 Aligned_cols=75 Identities=24% Similarity=0.277 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEEE
Q psy2160 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIK 581 (773)
Q Consensus 502 ~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i~ 581 (773)
+|||+|||.++|+++|+++|++||.|. .|.+++++.+|.++|||||+|.+.++|..|+. +++..|.|+.|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~ 71 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVE--------SIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCE 71 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCS--------EECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEE
Confidence 589999999999999999999999998 79999999889999999999999999999997 599999999999
Q ss_pred EEEc
Q psy2160 582 VERA 585 (773)
Q Consensus 582 V~~a 585 (773)
|.+|
T Consensus 72 v~~a 75 (75)
T 1iqt_A 72 IKVA 75 (75)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9875
No 227
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5e-14 Score=126.85 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=73.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|..+ +.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRD--------IDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEE--------EEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 6799999999999999999999999999998 888543 67899999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|+..
T Consensus 90 ~l~V~~a~~~ 99 (109)
T 1x4a_A 90 RLRVEFPRSG 99 (109)
T ss_dssp ECEEECCCCC
T ss_pred EEEEEEcccC
Confidence 9999998743
No 228
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.52 E-value=1.2e-14 Score=130.72 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=74.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc---ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~---I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..++|||+|||+++|+++|+++|+.||. |.. |+|+++.. |+++|||||+|.+.++|..||. +|+..|
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~--------v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENG--------IHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTT--------EECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcce--------EEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 7799999999999999999999999998 787 99999998 9999999999999999999999 999999
Q ss_pred cCeEEEEEeec
Q psy2160 291 RGKKIKVERAK 301 (773)
Q Consensus 291 ~g~~I~V~~A~ 301 (773)
.|+.|.|..|.
T Consensus 80 ~gr~i~V~~a~ 90 (107)
T 2lmi_A 80 GQRYVEVYEIN 90 (107)
T ss_dssp SSSCCCCEECC
T ss_pred CCeEEEEEECC
Confidence 99999998876
No 229
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=7.2e-15 Score=130.36 Aligned_cols=81 Identities=22% Similarity=0.377 Sum_probs=73.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecC-CCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~-~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
....++|||+|||.++|+++|+++|+.|| |. .|+|+.+. .+|+++|||||+|.+.++|..|+ .|||..|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~--------~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-IS--------AVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EE--------EEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 34679999999999999999999999999 88 79999998 57999999999999999999999 8999999
Q ss_pred cCeEEEEEEccc
Q psy2160 576 RGKKIKVERAKF 587 (773)
Q Consensus 576 ~g~~i~V~~a~~ 587 (773)
.|+.|+|.+|+.
T Consensus 86 ~g~~l~V~~a~~ 97 (100)
T 2j76_E 86 GNRRIRVDVADQ 97 (100)
T ss_dssp TTBCCCCEECCC
T ss_pred CCeEEEEEeccC
Confidence 999999999873
No 230
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.51 E-value=1.8e-14 Score=147.55 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=75.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcC--cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G--~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
..++|||+|||+++|+++|+++|++|| .|.. |+|++|+.||+++|||||+|.+.++|.+||+.||+..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~--------v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILE--------IKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEE--------EEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 678999999999999999999999999 8988 999999988999999999999999999999999999999
Q ss_pred CeEEEEEeec
Q psy2160 292 GKKIKVERAK 301 (773)
Q Consensus 292 g~~I~V~~A~ 301 (773)
|++|+|.+|.
T Consensus 139 Gr~l~V~~a~ 148 (229)
T 3q2s_C 139 GQNPVVTPVN 148 (229)
T ss_dssp TBCCEEEECC
T ss_pred CEEeEEEECC
Confidence 9999999876
No 231
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=128.10 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=74.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee---
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI--- 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l--- 290 (773)
..++|||+|||.++|+++|+++|+.||.|.. |+|+++. +|.++|||||+|.+.++|..||..|||..|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVIS--------TRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 6799999999999999999999999999998 9999999 699999999999999999999999999999
Q ss_pred -----cCeEEEEEeec
Q psy2160 291 -----RGKKIKVERAK 301 (773)
Q Consensus 291 -----~g~~I~V~~A~ 301 (773)
.+++|.|.+|.
T Consensus 95 ~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 95 PGVSAPTEPLLCKFSG 110 (114)
T ss_dssp TTSCCCSSCBEEEECC
T ss_pred ccccCCCCceeEEccC
Confidence 57889998876
No 232
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2e-14 Score=129.36 Aligned_cols=83 Identities=20% Similarity=0.331 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCc-ceeccCCCceEEEEE-ecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cc
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKESVDLALSILD--GY 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-I~~~~~~~~~~i~l~-~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~ 573 (773)
...++|||+|||.++|+++|+++|+.||. |. .|.|+ .+..+|.++|||||+|.+.++|..|+..|| +.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~--------~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~ 77 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVL--------DVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRI 77 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEE--------EEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCS
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCce--------EEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCc
Confidence 45789999999999999999999999998 88 78888 788888999999999999999999999996 58
Q ss_pred eecCeEEEEEEcccc
Q psy2160 574 EIRGKKIKVERAKFT 588 (773)
Q Consensus 574 ~i~g~~i~V~~a~~~ 588 (773)
.|.|+.|+|.+|...
T Consensus 78 ~~~g~~l~V~~a~~~ 92 (109)
T 2dis_A 78 QLWGHQIAVDWAEPE 92 (109)
T ss_dssp CBTTBCCEEEESCSS
T ss_pred eecCCeEEEEEcCCC
Confidence 999999999999843
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=3.5e-14 Score=130.98 Aligned_cols=79 Identities=28% Similarity=0.475 Sum_probs=75.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|++||.|. .|+|+.++.+|.++|||||+|.+.++|..|+ .|||..|.|+.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 106 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSIN--------RITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRT 106 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEE--------EEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 58999999999999999999999999999 7999999888999999999999999999999 89999999999
Q ss_pred EEEEEccc
Q psy2160 580 IKVERAKF 587 (773)
Q Consensus 580 i~V~~a~~ 587 (773)
|+|.+++.
T Consensus 107 l~V~~a~~ 114 (124)
T 2jwn_A 107 IKVLPKRT 114 (124)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 99999984
No 234
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=128.74 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 498 QENTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
...++|||+|||..+ |+++|+++|++||.|. .|.|+ ..+|.++|||||+|.+.++|..|+..||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~--------~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEE--------EEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEE--------EEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 346899999999999 7899999999999999 78887 3568999999999999999999999999
Q ss_pred CceecCe-EEEEEEcc
Q psy2160 572 GYEIRGK-KIKVERAK 586 (773)
Q Consensus 572 g~~i~g~-~i~V~~a~ 586 (773)
|..|.|+ +|+|.+|.
T Consensus 83 g~~~~g~~~l~V~~a~ 98 (105)
T 2nlw_A 83 GYKLDKQHTFRVNLFT 98 (105)
T ss_dssp SEECSTTCEEEEECSC
T ss_pred CcccCCCceEEEEEcc
Confidence 9999998 99999987
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=2.7e-14 Score=130.68 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
...++|||+|||.++|+++|+++|+.||. |. .|+|+++.. |+++|||||+|.+.++|.+||. |||..
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~ 84 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVA--------GVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRES 84 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGG--------GEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCce--------eEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCe
Confidence 45789999999999999999999999999 66 699999987 9999999999999999999998 99999
Q ss_pred ecCeEEEEEEcc
Q psy2160 575 IRGKKIKVERAK 586 (773)
Q Consensus 575 i~g~~i~V~~a~ 586 (773)
|.|+.|.|.++.
T Consensus 85 ~~gr~i~V~~a~ 96 (118)
T 2db1_A 85 MGHRYIEVFKSH 96 (118)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCeEEEEEECC
Confidence 999999999987
No 236
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=5.5e-14 Score=124.72 Aligned_cols=77 Identities=21% Similarity=0.453 Sum_probs=71.1
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
.....++|||+|||.++|+++|+++|+.||.|. +|++. +++|||||+|.+.++|..|+..|||..|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~--------~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 88 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFIL--------DFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF 88 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCS--------EEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEE--------EEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 344578999999999999999999999999998 78887 2489999999999999999999999999
Q ss_pred cCeEEEEEEcc
Q psy2160 576 RGKKIKVERAK 586 (773)
Q Consensus 576 ~g~~i~V~~a~ 586 (773)
.|+.|+|.+|+
T Consensus 89 ~g~~l~V~~a~ 99 (101)
T 2la4_A 89 QGRNLRTGWGK 99 (101)
T ss_dssp TTEECCCCBCC
T ss_pred CCeEEEEEecc
Confidence 99999999987
No 237
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.3e-14 Score=129.57 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..||.. ++..|.|+.
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLT--------DCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCS--------EEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 58999999999999999999999999998 799999998999999999999999999999987 999999999
Q ss_pred EEEEEcccc
Q psy2160 580 IKVERAKFT 588 (773)
Q Consensus 580 i~V~~a~~~ 588 (773)
|+|.+|...
T Consensus 98 l~V~~a~~~ 106 (116)
T 1x4b_A 98 VEPKRAVAR 106 (116)
T ss_dssp EEEECCSSC
T ss_pred EEEEECCCC
Confidence 999999843
No 238
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.4e-14 Score=129.20 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=71.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.+..+..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 95 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 95 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSS--------SCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccc--------eEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 6799999999999999999999999999954 22222222599999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 96 ~l~v~~a~~~ 105 (115)
T 2cpx_A 96 ILVIEFGKNK 105 (115)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999998743
No 239
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=131.76 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=72.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcc----cccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLV----MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I----~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
..++|||+|||+++|+++|+++|++||.| .. |+|+++. +|+++|||||+|.+.++|.+||+. |+..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~--------v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~ 91 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEG--------ILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDL 91 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGG--------EEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcce--------EEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCe
Confidence 56899999999999999999999999986 45 9999996 599999999999999999999985 9999
Q ss_pred ecCeEEEEEeec
Q psy2160 290 IRGKKIKVERAK 301 (773)
Q Consensus 290 l~g~~I~V~~A~ 301 (773)
|.|+.|.|..|.
T Consensus 92 l~gR~i~V~~a~ 103 (123)
T 2dha_A 92 LGKRYIELFRST 103 (123)
T ss_dssp SSSCEECCEEEC
T ss_pred eCCeEEEEEECC
Confidence 999999998775
No 240
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=9.9e-15 Score=136.95 Aligned_cols=81 Identities=26% Similarity=0.449 Sum_probs=78.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD--------VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSE--------EECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 7799999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|+.
T Consensus 118 ~l~V~~a~~ 126 (135)
T 2lea_A 118 ELRVQMARY 126 (135)
T ss_dssp CCEEEECCC
T ss_pred EEEEEECCC
Confidence 999999874
No 241
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.2e-14 Score=126.23 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|..+ +.++|||||+|.+.++|..||+.||+..|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 87 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIR--------DIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 87 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEE--------EEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34678999999999999999999999999998 7888655 557999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|+..
T Consensus 88 g~~l~V~~a~~~ 99 (109)
T 1x4a_A 88 GYRLRVEFPRSG 99 (109)
T ss_dssp TEECEEECCCCC
T ss_pred CeEEEEEEcccC
Confidence 999999999843
No 242
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-14 Score=124.39 Aligned_cols=81 Identities=20% Similarity=0.253 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++.+|.++|||||+|.+.++|..||. ++..|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~ 81 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVL--------MVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID 81 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeE--------EEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC
Confidence 34578999999999999999999999999999 79999999889999999999999999999997 578999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.++..
T Consensus 82 g~~l~v~~a~~ 92 (103)
T 2cqg_A 82 GRWCDCKLPNS 92 (103)
T ss_dssp TEEEEEECCCT
T ss_pred CeEEEEEecCC
Confidence 99999999984
No 243
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=2.8e-14 Score=132.14 Aligned_cols=78 Identities=18% Similarity=0.345 Sum_probs=71.2
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
.+++|||+|||+.+++++|+ ++|++||.|.. |.+.+ +|+++|||||+|.+.++|..||..|||..
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~--------v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~ 96 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILD--------IVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYP 96 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEE--------EEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEE--------EEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 67899999999999999876 69999999987 77753 48999999999999999999999999999
Q ss_pred ecCeEEEEEeecc
Q psy2160 290 IRGKKIKVERAKF 302 (773)
Q Consensus 290 l~g~~I~V~~A~~ 302 (773)
|.|++|+|.+|..
T Consensus 97 l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 97 FQGNPLVITFSET 109 (127)
T ss_dssp CTTSCCEEEECCC
T ss_pred eCCCEEEEEEccC
Confidence 9999999999873
No 244
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4e-14 Score=129.04 Aligned_cols=76 Identities=18% Similarity=0.315 Sum_probs=69.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC--ceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng--~~l~ 291 (773)
.+++|||+|||+++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||+.|++ ..|.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~--------v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~ 95 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTN--------LLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLR 95 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCE--------EEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 5789999999999999999999999999998 999865 68999999999999999998874 6799
Q ss_pred CeEEEEEeeccc
Q psy2160 292 GKKIKVERAKFT 303 (773)
Q Consensus 292 g~~I~V~~A~~~ 303 (773)
|++|+|.+|+.+
T Consensus 96 Gr~l~V~~a~~k 107 (119)
T 2ad9_A 96 GQPIYIQFSNHK 107 (119)
T ss_dssp TBCCEEEECSSS
T ss_pred CeEEEEEEccCC
Confidence 999999998743
No 245
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=123.58 Aligned_cols=73 Identities=18% Similarity=0.218 Sum_probs=67.1
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 500 NTKVYVSNLPLDL------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 500 ~~~l~V~nLp~~~------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
.++|||+|||.++ |+++|+++|++||.|. .|.|+ +.+|.++|||||+|.+.++|..|+..|||.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~--------~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKIT--------NDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEE--------EEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeE--------EEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 3789999999999 7899999999999998 78877 356899999999999999999999999999
Q ss_pred eecCe-EEEE
Q psy2160 574 EIRGK-KIKV 582 (773)
Q Consensus 574 ~i~g~-~i~V 582 (773)
.|.|+ +|+|
T Consensus 71 ~~~g~~~l~V 80 (81)
T 2krb_A 71 KLDKQHTFRV 80 (81)
T ss_dssp CCSSSSCCCC
T ss_pred ccCCceeEEe
Confidence 99999 8876
No 246
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.2e-14 Score=129.76 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHH---HHHHhcCcceeccCCCceEEEEEecCCCC---CCcceEEEEeCChHHHHHHHHHhC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFV---EVMQKCGLVMKDVDTNQMKIKLYTDPYTK---DFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~---~~F~~~G~I~~~~~~~~~~i~l~~d~~tg---~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
...++|||+|||+++|+++|+ ++|++||.|. .|+|+.+..++ .++|||||+|.+.++|.+||..||
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~--------~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~ln 84 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIH--------KVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVN 84 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEE--------EEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEE--------EEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhC
Confidence 456899999999999999999 9999999999 79999988644 456999999999999999999999
Q ss_pred CceecCeEEEEEEcccc
Q psy2160 572 GYEIRGKKIKVERAKFT 588 (773)
Q Consensus 572 g~~i~g~~i~V~~a~~~ 588 (773)
|..|.|++|+|.+|...
T Consensus 85 g~~~~gr~l~V~~a~~k 101 (111)
T 2cpi_A 85 NVVVDGRTLKASLGTTK 101 (111)
T ss_dssp TEEETTEEEEEESCCCC
T ss_pred CCEECCEEEEEEecccc
Confidence 99999999999999843
No 247
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.50 E-value=2.6e-14 Score=133.90 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=74.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
...++|||+|||+++|+++|+++|+.||. |. .|+|++|+. |+++|||||+|.+.++|.+||. |||..
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~--------~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~ 111 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAA--------GVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRES 111 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSST--------TEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCcee--------EEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCE
Confidence 45789999999999999999999999999 66 699999988 9999999999999999999998 99999
Q ss_pred ecCeEEEEEEcc
Q psy2160 575 IRGKKIKVERAK 586 (773)
Q Consensus 575 i~g~~i~V~~a~ 586 (773)
|.|+.|.|.+|.
T Consensus 112 l~gr~i~V~~a~ 123 (136)
T 2hgl_A 112 MGHRYIEVFKSH 123 (136)
T ss_dssp SSSSEEEEEECC
T ss_pred ECCEEEEEEECC
Confidence 999999999987
No 248
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=4.6e-14 Score=128.36 Aligned_cols=78 Identities=22% Similarity=0.378 Sum_probs=73.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.|+++ +.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 75 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQ--------IRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR 75 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 6799999999999999999999999999998 999875 55699999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
.|+|.+|..
T Consensus 76 ~l~v~~a~~ 84 (115)
T 3lqv_A 76 YLVVLYYNA 84 (115)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEecC
Confidence 999998863
No 249
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=3.9e-14 Score=125.89 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=74.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |+|+++. +|.++|||||+|.+.++|..||. ++..|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKE--------VKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEE--------EEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEE--------EEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 6799999999999999999999999999998 9999999 69999999999999999999998 99999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.++..
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 999998874
No 250
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=125.30 Aligned_cols=96 Identities=50% Similarity=0.997 Sum_probs=89.1
Q ss_pred CCCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCCCCCeEEEEEecCHHHHHHHHHHhCCcccCC
Q psy2160 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ 425 (773)
Q Consensus 346 ~~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~~~~G~afV~F~~~e~A~~Ai~~lng~~~~G 425 (773)
+..+++|+|+||+.+.++..++..+.+++++|+++|++||.|..|.+.+++++|+|||.|.+.++|.+|+..|||+.|+|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 56689999999999988888889999999999999999999999988888899999999999999999999999999999
Q ss_pred eeEEEEecCCCccccc
Q psy2160 426 RQITAETWDGKTRYKI 441 (773)
Q Consensus 426 r~I~v~~~~~~~~~~~ 441 (773)
++|.|.++.++.+|..
T Consensus 92 r~l~v~~a~~~~~~~~ 107 (112)
T 2dit_A 92 RQITAQAWDGTTDYQS 107 (112)
T ss_dssp EECEEEECCSCCCSSC
T ss_pred cEEEEEEeCCCCCccc
Confidence 9999999988876654
No 251
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.50 E-value=6e-14 Score=127.56 Aligned_cols=79 Identities=23% Similarity=0.404 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
+...++|||+|||.++|+++|+++|+.||.|. .|.|+.+ +.++|||||+|.+.++|..|+..|||..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIR--------QIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34578999999999999999999999999999 7999877 446999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|.|.+|.
T Consensus 74 g~~l~v~~a~ 83 (115)
T 3lqv_A 74 NRYLVVLYYN 83 (115)
T ss_dssp SCBCEEEECC
T ss_pred CeEEEEEEec
Confidence 9999999998
No 252
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=6e-14 Score=125.35 Aligned_cols=85 Identities=27% Similarity=0.407 Sum_probs=70.8
Q ss_pred CcEEEEecCC-Ccccccc----------c---hhhHHHHHHHHHHHH-hcCCceeEEEecC---CCCCcEEEEEecCHHH
Q psy2160 634 ESVIIVKNLF-DPALFDK----------D---VTLILEYQQDLREEC-SKCGHVKKVVLHD---KHPEGVAQIFFKEPEA 695 (773)
Q Consensus 634 ~~~l~ikNl~-~~~~~~~----------d---~~~~~~l~edl~~~f-~~fG~V~~v~i~~---~~~~G~afV~F~~~e~ 695 (773)
++||+|+||+ +|..... + ...+.+|.++|+++| ++||.|.+|.|.. +.++|+|||.|.++++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4799999999 4542211 0 124668889999999 9999999999875 3578999999999999
Q ss_pred HHHHHHHhCCceeCCeEEEEEEe
Q psy2160 696 ADACRELLNGRWFGQRQITAETW 718 (773)
Q Consensus 696 A~~Ai~~lnGr~f~Gr~l~v~~~ 718 (773)
|.+|+..|||+.|+||+|.|.|+
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHHCCCEECCEEEEEEEc
Confidence 99999999999999999999885
No 253
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=8.8e-14 Score=122.64 Aligned_cols=74 Identities=20% Similarity=0.360 Sum_probs=69.2
Q ss_pred CCccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 213 EESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 213 ~~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
+.+++|||+|||. ++|+++|+++|++||.|.. |+|. +|||||+|.+.++|..|+..|||..|.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIEXESQEMNF 83 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEE--------EEEC--------SSEEEEEESSHHHHHHHHHHHTTSEET
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4889999999998 9999999999999999998 8872 789999999999999999999999999
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|++|+.
T Consensus 84 g~~l~V~~a~~ 94 (97)
T 2xnq_A 84 GKKLILEVSSS 94 (97)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEecCC
Confidence 99999998863
No 254
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.5e-14 Score=127.54 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=70.5
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecC----hHH----HHHHHH
Q psy2160 216 TKVYVSNL----PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK----KES----VDLALS 283 (773)
Q Consensus 216 ~~VyV~nL----P~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~----~es----A~~Al~ 283 (773)
+.|||+|| |+.+++.+|+++|+.||.|.+ +.++.|+.||.++|||||+|.+ +++ |..|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~--------~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISH--------FEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSE--------EEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEE--------EEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 78999999 999999999999999999999 9999999999999999999996 433 888988
Q ss_pred --HcCCceecCeEEEEEee
Q psy2160 284 --ILDGYEIRGKKIKVERA 300 (773)
Q Consensus 284 --~lng~~l~g~~I~V~~A 300 (773)
.|||..|.|++|+|..-
T Consensus 75 ~~~lng~~I~Gr~irV~ln 93 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILN 93 (136)
T ss_dssp HTTTTCEEETTEEEEEEEC
T ss_pred HhhhcCCeecCcEEEEEEC
Confidence 78999999999999753
No 255
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.49 E-value=1.2e-14 Score=129.13 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=71.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. .++++..+|.++|||||+|.+.++|..||+ ||+..|.|+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~---------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~ 85 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND---------LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN 85 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT---------CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce---------EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc
Confidence 6789999999999999999999999999885 344555569999999999999999999999 999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 86 ~l~V~~a~~ 94 (101)
T 1fj7_A 86 EIKLEKPKG 94 (101)
T ss_dssp CCEEECCSC
T ss_pred EEEEEEcCC
Confidence 999998863
No 256
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-14 Score=127.39 Aligned_cols=79 Identities=13% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.+ .|+|++|+ +|+++|||||+|.+.++|.+|| .+|+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~---------~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g 81 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM---------RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQH 81 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS---------EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce---------EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECC
Confidence 456899999999999999999999999955 49999998 7999999999999999999999 589999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.|..+..
T Consensus 82 r~i~V~~~~~ 91 (102)
T 1wez_A 82 RYVELFLNST 91 (102)
T ss_dssp SCCEEEEECC
T ss_pred cEEEEEECCC
Confidence 9999998874
No 257
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=1.5e-13 Score=122.94 Aligned_cols=86 Identities=26% Similarity=0.327 Sum_probs=78.0
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC------CCCeEEEEEecCHHHHHHHHHHhCCc
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK------HPEGVAQIFFKEPEAADACRELLNGR 421 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~------~~~G~afV~F~~~e~A~~Ai~~lng~ 421 (773)
.+++|+|+||++|.++.++.. ..+++++|+++|++||.|.+|.|+.. ++.|+|||+|.+.++|.+|+..|||+
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~-~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEE-YEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHH-HHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHH-HHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 478999999999999876544 68999999999999999999998753 36899999999999999999999999
Q ss_pred ccCCeeEEEEecC
Q psy2160 422 WFGQRQITAETWD 434 (773)
Q Consensus 422 ~~~Gr~I~v~~~~ 434 (773)
.|+||+|.|.+++
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999875
No 258
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=5.3e-14 Score=130.27 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 498 QENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
.++++|||+|||+.+++++|+ ++|++||.|. +|.+.. +|.++|||||+|.+.++|..|+..|||.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~--------~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL--------DIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE--------EEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE--------EEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 457899999999999999866 7999999998 677753 4788999999999999999999999999
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|++|+|.+|+.
T Consensus 96 ~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 96 PFQGNPLVITFSET 109 (127)
T ss_dssp CCTTSCCEEEECCC
T ss_pred EeCCCEEEEEEccC
Confidence 99999999999983
No 259
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.5e-14 Score=123.17 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=71.3
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.| +++.+. +|+++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-----------~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI-----------KVPQNQ-NGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE-----------ECCBCS-SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE-----------EEEECC-CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 67999999999999999999999999964 456664 499999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 82 ~l~v~~a~~~ 91 (101)
T 2fc9_A 82 AIRLELQGPR 91 (101)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEEcCCC
Confidence 9999998754
No 260
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=6.1e-14 Score=124.49 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=68.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc--CCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l--ng~~l~ 291 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.|+++ +|||||+|.+.++|..|++.| ++..|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTN--------ILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 6689999999999999999999999999998 888754 789999999999999999976 567899
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|.+|..
T Consensus 80 Gr~l~V~~a~~ 90 (101)
T 2cq1_A 80 NQPIYIQYSNH 90 (101)
T ss_dssp TEECEEEECSC
T ss_pred CcEEEEEEcCc
Confidence 99999999874
No 261
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.48 E-value=7e-14 Score=126.26 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
+...++|||+|||.++|+++|+++|++|| .|. .|.|+.+ .++|||||+|.+.++|..||+.|||..|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~--------~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETT--------FSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCS--------EEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeE--------EEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 34578999999999999999999999999 887 6777533 4699999999999999999999999999
Q ss_pred cCeEEEEEEcc
Q psy2160 576 RGKKIKVERAK 586 (773)
Q Consensus 576 ~g~~i~V~~a~ 586 (773)
.|+.|+|.++.
T Consensus 93 ~Gr~i~V~~a~ 103 (111)
T 2jvr_A 93 RGSVITVERDD 103 (111)
T ss_dssp TTEEEEEEESC
T ss_pred CCeEEEEEECC
Confidence 99999999987
No 262
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=122.69 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=73.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.|+ . |+++++..+|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~--------~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---R--------ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---E--------EEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---E--------EEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 779999999999999999999999773 3 88899988899999999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|+..
T Consensus 83 ~l~V~~a~~~ 92 (102)
T 2fc8_A 83 KVTLDWAKPK 92 (102)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999998743
No 263
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.7e-14 Score=126.73 Aligned_cols=80 Identities=20% Similarity=0.309 Sum_probs=74.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceE-EEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMK-IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~-i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++|||+|||.++|+++|+++|+.||.|. . |+|+.+ .+|+++|||||+|.++++|..||.. |+..|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~ 82 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVP--------NGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIG 82 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEE--------EEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcc--------eeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhC
Confidence 4578999999999999999999999999997 4 888888 6799999999999999999999986 999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.++..
T Consensus 83 gr~i~v~~~~~ 93 (104)
T 1wg5_A 83 HRYIEIFKSSR 93 (104)
T ss_dssp SSCCEEEEECT
T ss_pred CcEEEEEECCH
Confidence 99999998873
No 264
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.3e-14 Score=126.96 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC--ce
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG--YE 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng--~~ 574 (773)
..+.++|||+|||+++|+++|+++|++||.|. +|+|+++ +|||||+|.+.++|..|+..|++ ..
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~--------~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~ 93 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVT--------NLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPV 93 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCC--------EEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 44678999999999999999999999999999 7999865 79999999999999999999984 68
Q ss_pred ecCeEEEEEEcccc
Q psy2160 575 IRGKKIKVERAKFT 588 (773)
Q Consensus 575 i~g~~i~V~~a~~~ 588 (773)
|.|++|+|.+|+..
T Consensus 94 l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 94 LRGQPIYIQFSNHK 107 (119)
T ss_dssp BTTBCCEEEECSSS
T ss_pred ECCeEEEEEEccCC
Confidence 99999999999843
No 265
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-14 Score=127.02 Aligned_cols=77 Identities=10% Similarity=0.185 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc--
Q psy2160 497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY-- 573 (773)
Q Consensus 497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~-- 573 (773)
..+.++|||+|||. ++|+++|+++|++||.|. +|.|+++ +|||||+|.+.++|..||+.||+.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 77 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVIS--------NHLILNK------INEAFIEMATTEDAQAAVDYYTTTPA 77 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEE--------EEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEE--------EEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCc
Confidence 34678999999999 999999999999999999 7988865 589999999999999999999864
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|++|+|.+|+.
T Consensus 78 ~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 78 LVFGKPVRVHLSQK 91 (102)
T ss_dssp EETTEECEEEEECC
T ss_pred eECCcEEEEEECCC
Confidence 59999999999983
No 266
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=9.7e-14 Score=123.09 Aligned_cols=80 Identities=25% Similarity=0.319 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. ++.+ .+|.++|||||+|.+.++|.+||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-----------~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFIK-----------VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIE 79 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-----------CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-----------EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34679999999999999999999999999774 5556 45889999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.++...
T Consensus 80 g~~l~v~~a~~~ 91 (101)
T 2fc9_A 80 GRAIRLELQGPR 91 (101)
T ss_dssp TEEEEEEECSSC
T ss_pred CeEEEEEEcCCC
Confidence 999999999854
No 267
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=124.18 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=71.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||..||+..|.|+
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIME--------IRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 6799999999999999999999999999998 999865 68999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|+..
T Consensus 90 ~l~v~~a~~~ 99 (109)
T 1x4g_A 90 VVKCYWGKES 99 (109)
T ss_dssp ECEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998743
No 268
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.8e-14 Score=133.08 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .+.++.+..+|+++|||||+|.+.++|..||. |||..|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~--------~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 92 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVE--------DSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG 92 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCT--------TTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCcc--------ceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC
Confidence 34568999999999999999999999999998 45566666679999999999999999999998 9999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|.|.+|.
T Consensus 93 gr~i~V~~a~ 102 (124)
T 1wel_A 93 NRFIQVHPIT 102 (124)
T ss_dssp TSCBEEEEEC
T ss_pred CcEEEEEECC
Confidence 9999999998
No 269
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8e-14 Score=125.52 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||+++|+++|+++|+.| .|. .|+|+.|+. |+++|||||+|.++++|.+|| .||+..|.|+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~--------~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~ 84 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVD--------AVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRY 84 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCC--------EEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-Cee--------EEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeE
Confidence 4699999999999999999999999 666 699999987 999999999999999999999 69999999999
Q ss_pred EEEEEcc
Q psy2160 580 IKVERAK 586 (773)
Q Consensus 580 i~V~~a~ 586 (773)
|.|..|.
T Consensus 85 i~V~~a~ 91 (109)
T 2dnn_A 85 VEVSPAT 91 (109)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 9999887
No 270
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=118.90 Aligned_cols=75 Identities=15% Similarity=0.305 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh-CCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l-ng~~i~ 576 (773)
...++|||+|||.++|+++|+++|++||.|. .|+++++ +|||||+|.+.++|..|+..| ||..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~--------~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIR--------TITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEE--------EEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEe--------EEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 4578999999999999999999999999998 7888864 789999999999999999988 999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|++|+|.+|+
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999999975
No 271
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=119.50 Aligned_cols=74 Identities=24% Similarity=0.421 Sum_probs=69.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|. +|||||+|.+.++|..|+..||+..|.|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 70 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLE--------CDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGV 70 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEE--------EEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 7899999999999999999999999999998 8887 57999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.++...
T Consensus 71 ~l~v~~a~~~ 80 (90)
T 2dnq_A 71 NINVEASKNK 80 (90)
T ss_dssp BCEEECSSCC
T ss_pred EEEEEECCCC
Confidence 9999998743
No 272
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.47 E-value=9.3e-14 Score=126.02 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=71.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC----hHH----HHHHHH
Q psy2160 501 TKVYVSNL----PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK----KES----VDLALS 568 (773)
Q Consensus 501 ~~l~V~nL----p~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~----~e~----A~~Ai~ 568 (773)
+.|||+|| |+.+++.+|+++|+.||.|. .|.++.|+.||+++|||||+|.+ +++ |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~--------~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEIS--------HFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCS--------EEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeE--------EEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 99999999999999999999 89999999999999999999996 444 899998
Q ss_pred --HhCCceecCeEEEEEEcc
Q psy2160 569 --ILDGYEIRGKKIKVERAK 586 (773)
Q Consensus 569 --~lng~~i~g~~i~V~~a~ 586 (773)
.|||..|.|++|+|..-.
T Consensus 75 ~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 75 KHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HTTTTCEEETTEEEEEEECC
T ss_pred HhhhcCCeecCcEEEEEECc
Confidence 789999999999999866
No 273
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.5e-15 Score=136.15 Aligned_cols=90 Identities=30% Similarity=0.451 Sum_probs=80.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|......+.|.|+|+.++.+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35689999999999999999999999999984333344449999998889999999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
++|+|.+|..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999999984
No 274
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.47 E-value=7.3e-14 Score=123.90 Aligned_cols=74 Identities=22% Similarity=0.478 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|. +++|||||+|.+.++|..|+..|||..|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~--------~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILD--------FKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSE--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEE--------EEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 6799999999999999999999999999998 8887 3578999999999999999999999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|+|.+|+
T Consensus 92 ~l~V~~a~ 99 (101)
T 2la4_A 92 NLRTGWGK 99 (101)
T ss_dssp ECCCCBCC
T ss_pred EEEEEecc
Confidence 99998876
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=4.1e-14 Score=124.45 Aligned_cols=78 Identities=19% Similarity=0.432 Sum_probs=72.8
Q ss_pred CccEEEEcCCCCCCCHHHHH----HHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce
Q psy2160 214 ESTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 289 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~----~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~ 289 (773)
.+++|||+|||.++|+++|+ ++|++||.|.. |++.+ +|.++|||||+|.+.++|..|+..|||..
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~--------v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILD--------ILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEE--------EECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEE--------EEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 77999999999999999999 99999999998 88764 48889999999999999999999999999
Q ss_pred ecCeEEEEEeecc
Q psy2160 290 IRGKKIKVERAKF 302 (773)
Q Consensus 290 l~g~~I~V~~A~~ 302 (773)
|.|++|+|.+|..
T Consensus 76 ~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 76 FYDKPMRIQYAKT 88 (97)
T ss_dssp ETTEECEEEECSS
T ss_pred ECCcEEEEEEccC
Confidence 9999999999873
No 276
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=123.01 Aligned_cols=77 Identities=16% Similarity=0.221 Sum_probs=69.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh--CCce
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYE 574 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l--ng~~ 574 (773)
..+.++|||+|||.++|+++|+++|++||.|. .|.|+++ +|||||+|.+.++|..|++.| ++..
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVT--------NILMLKG------KNQAFLELATEEAAITMVNYYSAVTPH 77 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 34678999999999999999999999999998 7888754 799999999999999999977 5788
Q ss_pred ecCeEEEEEEccc
Q psy2160 575 IRGKKIKVERAKF 587 (773)
Q Consensus 575 i~g~~i~V~~a~~ 587 (773)
|.|++|.|.+|+.
T Consensus 78 ~~Gr~l~V~~a~~ 90 (101)
T 2cq1_A 78 LRNQPIYIQYSNH 90 (101)
T ss_dssp ETTEECEEEECSC
T ss_pred ECCcEEEEEEcCc
Confidence 9999999999984
No 277
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=120.71 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=69.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|. +.++. +.++|||||+|.+.++|..||..|||..|.|+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 679999999999999999999999999996 35554 56789999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 85 ~l~V~~a~~ 93 (97)
T 2e5j_A 85 TLRVALARQ 93 (97)
T ss_dssp CCEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999874
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=6.7e-14 Score=127.04 Aligned_cols=81 Identities=20% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI- 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i- 575 (773)
....++|||+|||.++|+++|+++|+.||.|. .|+|+.++ +|.++|||||+|.+.++|..|+..|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVI--------STRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEE--------EEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 34578999999999999999999999999999 79999998 799999999999999999999999999999
Q ss_pred -------cCeEEEEEEcc
Q psy2160 576 -------RGKKIKVERAK 586 (773)
Q Consensus 576 -------~g~~i~V~~a~ 586 (773)
.|++|.|.+|.
T Consensus 93 ~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 93 TPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp CCTTSCCCSSCBEEEECC
T ss_pred CCccccCCCCceeEEccC
Confidence 57889999987
No 279
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=5.5e-14 Score=143.96 Aligned_cols=80 Identities=23% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcC--cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCG--LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G--~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..++|||+|||.++|+++|+++|+.|| .|. .|+|++|+.+|+++|||||+|.+.++|.+||..|||..|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~--------~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~ 138 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDIL--------EIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH 138 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEE--------EEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceE--------EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC
Confidence 467999999999999999999999999 888 7999999999999999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|+|.+|.
T Consensus 139 Gr~l~V~~a~ 148 (229)
T 3q2s_C 139 GQNPVVTPVN 148 (229)
T ss_dssp TBCCEEEECC
T ss_pred CEEeEEEECC
Confidence 9999999997
No 280
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=3.2e-13 Score=121.47 Aligned_cols=74 Identities=26% Similarity=0.417 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|+.+ |||||+|.+.++|..||+.||+..|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 78 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 78 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEE--------EEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeE--------EEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCC
Confidence 6799999999999999999999999999998 999876 799999999999999999999999999
Q ss_pred ----eEEEEEeecc
Q psy2160 293 ----KKIKVERAKF 302 (773)
Q Consensus 293 ----~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 79 ~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 79 EGETAYIRVKVDGP 92 (108)
T ss_dssp TSCEEEEEEEESSC
T ss_pred cCcceEEEEEeCCC
Confidence 9999999874
No 281
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.47 E-value=5.6e-14 Score=123.60 Aligned_cols=80 Identities=20% Similarity=0.442 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFV----EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~----~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
..+.++|||+|||.++|+++|+ ++|++||.|. .|.+.. +|.++|||||+|.+.++|..|+..|||
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~--------~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQIL--------DILVSR---SLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEE--------EEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEE--------EEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 3467999999999999999999 9999999998 688764 367899999999999999999999999
Q ss_pred ceecCeEEEEEEccc
Q psy2160 573 YEIRGKKIKVERAKF 587 (773)
Q Consensus 573 ~~i~g~~i~V~~a~~ 587 (773)
..|.|+.|+|.+|..
T Consensus 74 ~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 74 FPFYDKPMRIQYAKT 88 (97)
T ss_dssp CEETTEECEEEECSS
T ss_pred CEECCcEEEEEEccC
Confidence 999999999999983
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.1e-13 Score=118.50 Aligned_cols=75 Identities=15% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc-CCceec
Q psy2160 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL-DGYEIR 291 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l-ng~~l~ 291 (773)
+.+++|||+|||.++|+++|+++|++||.|.. |++.++ +|||||+|.+.++|..|+..| ++..+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~--------~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~ 75 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRT--------ITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVN 75 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEE--------EEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEET
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeE--------EEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeEC
Confidence 37799999999999999999999999999998 898863 689999999999999999988 999999
Q ss_pred CeEEEEEeec
Q psy2160 292 GKKIKVERAK 301 (773)
Q Consensus 292 g~~I~V~~A~ 301 (773)
|++|+|++|+
T Consensus 76 g~~l~v~~ak 85 (85)
T 2ytc_A 76 GRRLNVKWGR 85 (85)
T ss_dssp TEECCEEECC
T ss_pred CCEEEEEecC
Confidence 9999998874
No 283
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.47 E-value=8.7e-14 Score=122.16 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=70.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|+.||.|.. + ..+|.++|||||+|.+.++|..||..||+..|.|+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~--------~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 81 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRL--------V-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECC--------E-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEE--------e-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 6799999999999999999999999998875 4 23489999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 82 ~l~v~~a~~ 90 (96)
T 1fjc_A 82 SVSLYYTGE 90 (96)
T ss_dssp EEEEEECSS
T ss_pred EEEEEEcCC
Confidence 999999864
No 284
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.5e-14 Score=123.34 Aligned_cols=81 Identities=25% Similarity=0.331 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.|+ .|+++.+..+|.++|||||+|.+.++|..||..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~-----------~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 80 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV-----------RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID 80 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS-----------EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe-----------EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 45679999999999999999999999773 3678888888999999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|+..
T Consensus 81 g~~l~V~~a~~~ 92 (102)
T 2fc8_A 81 GNKVTLDWAKPK 92 (102)
T ss_dssp TEECEEEECCCC
T ss_pred CeEEEEEEecCC
Confidence 999999999843
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-14 Score=128.60 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCc---ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGL---VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~---I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
....++|||+|||.++|+++|+++|+.||. |. .|+|+.++. |+++|||||+|.+.++|.+||. |||.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~--------~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGEN--------GIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTT--------TEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcc--------eEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 346789999999999999999999999998 77 699999988 9999999999999999999998 9999
Q ss_pred eecCeEEEEEEcc
Q psy2160 574 EIRGKKIKVERAK 586 (773)
Q Consensus 574 ~i~g~~i~V~~a~ 586 (773)
.|+|+.|.|.+|.
T Consensus 78 ~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 78 YMGQRYVEVYEIN 90 (107)
T ss_dssp CSSSSCCCCEECC
T ss_pred eeCCeEEEEEECC
Confidence 9999999999987
No 286
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=1.3e-14 Score=128.87 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. . .++.+..+|.++|||||+|.+.++|.+||+ |||..|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKN--------D-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHH--------T-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc--------e-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 3578999999999999999999999999997 4 556666678899999999999999999998 99999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.+|..
T Consensus 85 ~~l~V~~a~~ 94 (101)
T 1fj7_A 85 NEIKLEKPKG 94 (101)
T ss_dssp BCCEEECCSC
T ss_pred cEEEEEEcCC
Confidence 9999999973
No 287
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=2.8e-13 Score=122.00 Aligned_cols=79 Identities=23% Similarity=0.417 Sum_probs=73.2
Q ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 496 ~~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
.....++|||+|||.++|+++|+++|++||.|. .|+|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM--------EIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 345679999999999999999999999999998 7998866 78999999999999999999999999
Q ss_pred cCeEEEEEEcccc
Q psy2160 576 RGKKIKVERAKFT 588 (773)
Q Consensus 576 ~g~~i~V~~a~~~ 588 (773)
.|+.|+|.+|+..
T Consensus 87 ~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 87 EGHVVKCYWGKES 99 (109)
T ss_dssp TTEECEEECCCCC
T ss_pred CCcEEEEEecCCC
Confidence 9999999999843
No 288
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.46 E-value=5.1e-14 Score=129.91 Aligned_cols=78 Identities=26% Similarity=0.346 Sum_probs=71.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCccc-ccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVM-KDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~-~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
..++|||+|||+++|+++|+++|+.|+++. . |+|++|+. |+++|||||+|.+.++|.+||+ +++..|.|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~--------v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g 110 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGLEIVPNG--------ITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGH 110 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTSCEEEEE--------EECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCceeeE--------EEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECC
Confidence 678999999999999999999999996553 4 99999998 9999999999999999999998 57899999
Q ss_pred eEEEEEeec
Q psy2160 293 KKIKVERAK 301 (773)
Q Consensus 293 ~~I~V~~A~ 301 (773)
+.|.|..+.
T Consensus 111 R~I~V~~a~ 119 (126)
T 2hgm_A 111 RYIEVFKSS 119 (126)
T ss_dssp BCCCCEEEC
T ss_pred EEEEEEECC
Confidence 999998875
No 289
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=121.26 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=69.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec--
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR-- 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~-- 291 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.+..+ +|||||+|.+.++|..|++.||+..|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 81 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRT--------IDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGP 81 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEE--------EEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 6799999999999999999999999999998 888643 789999999999999999999999999
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|.+|..
T Consensus 82 g~~l~V~~a~~ 92 (97)
T 1why_A 82 DRRLRVDFAKS 92 (97)
T ss_dssp SCBCEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999874
No 290
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=118.50 Aligned_cols=76 Identities=24% Similarity=0.412 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+ +|||||+|.+.++|..|+..|||..|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 68 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVL--------ECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLH 68 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEE--------EEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccC
Confidence 34679999999999999999999999999998 78887 689999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+++..
T Consensus 69 g~~l~v~~a~~~ 80 (90)
T 2dnq_A 69 GVNINVEASKNK 80 (90)
T ss_dssp SCBCEEECSSCC
T ss_pred CcEEEEEECCCC
Confidence 999999999843
No 291
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8.5e-14 Score=124.30 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=68.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--eec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l~ 291 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.|+++ +|||||+|.+.++|..|++.|++. .|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICY--------VMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEE--------EEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEE--------EEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 6789999999999999999999999999998 888753 689999999999999999988654 589
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|++|..
T Consensus 80 Gr~l~V~~a~~ 90 (104)
T 1wex_A 80 GQQAFFNYSTS 90 (104)
T ss_dssp SSBCEEEECSS
T ss_pred CEEEEEEEccC
Confidence 99999999874
No 292
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-14 Score=129.07 Aligned_cols=84 Identities=24% Similarity=0.400 Sum_probs=72.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|.... . .+++. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~-~---~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 93 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPP-I---QFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLY 93 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSC-C---EEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceE-E---EEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34678999999999999999999999999984100 0 24443 5889999999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|++|+|.+|...
T Consensus 94 g~~l~v~~a~~~ 105 (115)
T 2cpx_A 94 GKILVIEFGKNK 105 (115)
T ss_dssp SCBCEEEECCCC
T ss_pred CcEEEEEEccCC
Confidence 999999999843
No 293
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=122.39 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=70.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+.+ |||||+|.+.++|..||+.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEE--------EEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEe--------EEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3578999999999999999999999999998 7999866 899999999999999999999999999
Q ss_pred -----eEEEEEEccc
Q psy2160 578 -----KKIKVERAKF 587 (773)
Q Consensus 578 -----~~i~V~~a~~ 587 (773)
+.|.|.+|..
T Consensus 78 ~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 78 HEGETAYIRVKVDGP 92 (108)
T ss_dssp TTSCEEEEEEEESSC
T ss_pred CcCcceEEEEEeCCC
Confidence 9999999984
No 294
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.45 E-value=1.2e-13 Score=135.77 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=76.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|+.||.|.. |.|+.+. +|.++|||||+|.+.++|..||+.||+..|.|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKK--------AAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSE--------EEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 6799999999999999999999999999998 9999999 699999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|++|..
T Consensus 158 ~l~V~~a~~ 166 (177)
T 2f3j_A 158 PMDIQLVAS 166 (177)
T ss_dssp BCEEEEESS
T ss_pred EEEEEEecC
Confidence 999999874
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.9e-13 Score=123.08 Aligned_cols=73 Identities=23% Similarity=0.443 Sum_probs=69.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|. +|||||+|.+.++|..|+..|||..|.|+
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~--------v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKE--------VKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCE--------EEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 7899999999999999999999999999998 8887 68999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 94 ~l~V~~a~~ 102 (108)
T 2jvo_A 94 PLEVVYSKL 102 (108)
T ss_dssp ECEEESCSC
T ss_pred EEEEEEecC
Confidence 999998863
No 296
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=127.05 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=73.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcc----eeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLV----MKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I----~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
....++|||+|||+++|+++|+++|+.||.| . .|+|+.+. +|+++|||||+|.+.++|.+||.. |+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~--------~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKE--------GILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGG--------GEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcc--------eEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence 3567899999999999999999999999986 4 59999995 699999999999999999999975 99
Q ss_pred ceecCeEEEEEEcc
Q psy2160 573 YEIRGKKIKVERAK 586 (773)
Q Consensus 573 ~~i~g~~i~V~~a~ 586 (773)
..|.|+.|.|..+.
T Consensus 90 ~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 90 DLLGKRYIELFRST 103 (123)
T ss_dssp EESSSCEECCEEEC
T ss_pred CeeCCeEEEEEECC
Confidence 99999999999887
No 297
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=121.98 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|.++ +|||||+|.+.++|..|++.||+..|.|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~--------v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGE--------VFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSE--------EEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEE--------EEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 6799999999999999999999999999998 888743 68999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 80 ~l~v~~a~~ 88 (99)
T 2cpj_A 80 QLRVRFACH 88 (99)
T ss_dssp CCEEEESSC
T ss_pred eEEEEEcCC
Confidence 999999874
No 298
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=8.8e-14 Score=125.85 Aligned_cols=75 Identities=17% Similarity=0.170 Sum_probs=70.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |.|.+ ++|||||+|.+.++|..||..|||..|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGR--------VLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEE--------EECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 6789999999999999999999999999987 88763 478999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|++|..
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 999999874
No 299
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=123.42 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc--ee
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EI 575 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~--~i 575 (773)
.+.++|||+|||.++|+++|+++|++||.|. +|.|+++ +|||||+|.+.++|..|+..|++. .|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~--------~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTIC--------YVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEE--------EEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEE--------EEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 4578999999999999999999999999999 7888753 799999999999999999988764 58
Q ss_pred cCeEEEEEEccc
Q psy2160 576 RGKKIKVERAKF 587 (773)
Q Consensus 576 ~g~~i~V~~a~~ 587 (773)
.|++|.|.+|+.
T Consensus 79 ~Gr~l~V~~a~~ 90 (104)
T 1wex_A 79 AGQQAFFNYSTS 90 (104)
T ss_dssp SSSBCEEEECSS
T ss_pred CCEEEEEEEccC
Confidence 999999999984
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=123.54 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC--Ccee
Q psy2160 214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln--g~~l 290 (773)
.+++|||+|||.+ +|+++|+++|++||.|.. |+|.+ ++|||||+|.+.++|..||+.|+ +..|
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~--------v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKN--------YILMR------MKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSE--------EEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEE--------EEEec------CCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 5799999999998 999999999999999998 88863 47899999999999999999885 4569
Q ss_pred cCeEEEEEeecc
Q psy2160 291 RGKKIKVERAKF 302 (773)
Q Consensus 291 ~g~~I~V~~A~~ 302 (773)
.|++|+|.+|..
T Consensus 90 ~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 90 QGRCVKVDLSEK 101 (112)
T ss_dssp SSSCCEEEEECS
T ss_pred CCEEEEEEECcc
Confidence 999999999874
No 301
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=117.22 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+ ++||||+|.+.++|..|+..|||..|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 70 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVI--------ECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQ 70 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCC--------EEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 34678999999999999999999999999998 68886 459999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|+..
T Consensus 71 g~~l~V~~a~~~ 82 (92)
T 2dgt_A 71 GKRMHVQLSTSR 82 (92)
T ss_dssp TEEEEEEESSCC
T ss_pred CcEEEEEEccCC
Confidence 999999999843
No 302
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.44 E-value=3.7e-13 Score=118.63 Aligned_cols=74 Identities=20% Similarity=0.384 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
....++|||+|||. ++|+++|+++|+.||.|. .|+|. +|||||+|.+.++|..|+..|||..+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEE--------EEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45689999999998 999999999999999998 67772 79999999999999999999999999
Q ss_pred cCeEEEEEEcc
Q psy2160 576 RGKKIKVERAK 586 (773)
Q Consensus 576 ~g~~i~V~~a~ 586 (773)
.|+.|+|.+|+
T Consensus 83 ~g~~l~V~~a~ 93 (97)
T 2xnq_A 83 FGKKLILEVSS 93 (97)
T ss_dssp TTEECEEEECC
T ss_pred CCEEEEEEecC
Confidence 99999999987
No 303
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=5.1e-14 Score=133.35 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=71.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|......--..|++. .+|+++|||||+|.+.++|..||..|||..|.|+
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 6799999999999999999999999999875000000002332 2499999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 121 ~l~V~~a~~ 129 (143)
T 3egn_A 121 PMVVQFARS 129 (143)
T ss_dssp ECEEEECCC
T ss_pred EEEEEECCC
Confidence 999999874
No 304
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=2.2e-13 Score=119.89 Aligned_cols=77 Identities=17% Similarity=0.298 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..+.++|||+|||.++|+++|+++|++||.|. .|.+..+ +|||||+|.+.++|..|++.|||..|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIR--------TIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEE--------EEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 34578999999999999999999999999998 7888743 789999999999999999999999999
Q ss_pred --CeEEEEEEccc
Q psy2160 577 --GKKIKVERAKF 587 (773)
Q Consensus 577 --g~~i~V~~a~~ 587 (773)
|+.|+|.+|+.
T Consensus 80 ~~g~~l~V~~a~~ 92 (97)
T 1why_A 80 GPDRRLRVDFAKS 92 (97)
T ss_dssp SSSCBCEEEECCC
T ss_pred CCCcEEEEEECCC
Confidence 99999999984
No 305
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=118.49 Aligned_cols=72 Identities=25% Similarity=0.393 Sum_probs=64.7
Q ss_pred CCccEEEEcCCCCCCCHHH----HHHHHhhcC-cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 213 EESTKVYVSNLPLDLTQEE----FVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~te~e----l~~~Fs~~G-~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
|..|.|||+|||.++++++ |+++|+.|| .|.. | || |+|||.|.+.++|..|++.|||
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~--------V-------tg---G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS--------I-------TG---CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE--------C-------CT---TCEEEEESSHHHHHHHHHHHTT
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE--------E-------ec---CEEEEEECCHHHHHHHHHHhcC
Confidence 3566799999999999998 558999995 9987 4 35 9999999999999999999999
Q ss_pred ceecCeEEEEEeecc
Q psy2160 288 YEIRGKKIKVERAKF 302 (773)
Q Consensus 288 ~~l~g~~I~V~~A~~ 302 (773)
..|.||+|+|++|+.
T Consensus 69 ~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 69 EDVFGNRIIVSFTPK 83 (96)
T ss_dssp CCSSSSCCEEESSCC
T ss_pred CccCCceEEEEecCC
Confidence 999999999999884
No 306
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.8e-13 Score=117.49 Aligned_cols=76 Identities=25% Similarity=0.400 Sum_probs=70.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|+ ++||||+|.+.++|..|+..|||..|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~ 69 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVI--------ECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVK 69 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 44678999999999999999999999999998 78886 459999999999999999999999999
Q ss_pred CeEEEEEEcccc
Q psy2160 577 GKKIKVERAKFT 588 (773)
Q Consensus 577 g~~i~V~~a~~~ 588 (773)
|+.|+|.+|...
T Consensus 70 g~~l~v~~a~~~ 81 (90)
T 2dnp_A 70 GKRINVELSTKG 81 (90)
T ss_dssp TEECEEEESCCC
T ss_pred CcEEEEEECCCC
Confidence 999999999843
No 307
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=1.4e-13 Score=122.27 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|+.||.|. .|+|+.++ +|.++|||||+|.+.++|..|+. +|..|.|+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~--------~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~ 76 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVK--------EVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK 76 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEE--------EEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeE--------EEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCE
Confidence 458999999999999999999999999998 79999998 79999999999999999999997 99999999
Q ss_pred EEEEEEccc
Q psy2160 579 KIKVERAKF 587 (773)
Q Consensus 579 ~i~V~~a~~ 587 (773)
.|.|.++..
T Consensus 77 ~l~v~~a~~ 85 (102)
T 2xs2_A 77 KLKLGPAIR 85 (102)
T ss_dssp ECEEEEEEE
T ss_pred EEEEEECCc
Confidence 999999874
No 308
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=121.03 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=71.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|+|.++ +|||||+|.+.++|..|++.|||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~--------~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~ 77 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAG--------EVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLR 77 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCS--------EEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeE--------EEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 34578999999999999999999999999998 7888744 789999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|+|.+|+.
T Consensus 78 g~~l~v~~a~~ 88 (99)
T 2cpj_A 78 GKQLRVRFACH 88 (99)
T ss_dssp TBCCEEEESSC
T ss_pred CceEEEEEcCC
Confidence 99999999984
No 309
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.2e-13 Score=119.98 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=70.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. +.++.+ .++|||||+|.+.++|..|+..|||..|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~---------~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 82 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP---------LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLG 82 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC---------SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE---------EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34578999999999999999999999999996 455544 46999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|+.
T Consensus 83 g~~l~V~~a~~ 93 (97)
T 2e5j_A 83 TDTLRVALARQ 93 (97)
T ss_dssp SSCCEEEECCC
T ss_pred CcEEEEEEcCC
Confidence 99999999983
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.5e-13 Score=124.38 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|++||.|. .|.|+. ++|||||+|.+.++|..||..|||..|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 74 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLG--------RVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHV 74 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEE--------EEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCe
Confidence 468999999999999999999999999998 687763 478999999999999999999999999999
Q ss_pred EEEEEEccc
Q psy2160 579 KIKVERAKF 587 (773)
Q Consensus 579 ~i~V~~a~~ 587 (773)
+|.|.+|..
T Consensus 75 ~l~V~~a~~ 83 (111)
T 1whx_A 75 PLYLEWAPI 83 (111)
T ss_dssp BCEEEEEET
T ss_pred EEEEEECCC
Confidence 999999984
No 311
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.43 E-value=3.5e-13 Score=121.24 Aligned_cols=75 Identities=24% Similarity=0.437 Sum_probs=70.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|++||.|. .|.|. +|||||+|.+.++|..|+..|||..|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMK--------EVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFA 91 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCC--------EEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 45679999999999999999999999999998 78887 689999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|+.
T Consensus 92 g~~l~V~~a~~ 102 (108)
T 2jvo_A 92 NQPLEVVYSKL 102 (108)
T ss_dssp TEECEEESCSC
T ss_pred CeEEEEEEecC
Confidence 99999999983
No 312
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.6e-13 Score=116.88 Aligned_cols=74 Identities=26% Similarity=0.345 Sum_probs=68.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhc--CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~--G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
.+++|||+|||.++|+++|+++|++| |.|.. |++. +|||||+|.+.++|..||..||+..|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~--------~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVER--------VKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEE--------EEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEE--------EEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 67999999999999999999999999 88876 6653 579999999999999999999999999
Q ss_pred CeEEEEEeeccc
Q psy2160 292 GKKIKVERAKFT 303 (773)
Q Consensus 292 g~~I~V~~A~~~ 303 (773)
|++|+|.+|...
T Consensus 78 g~~l~v~~a~~~ 89 (99)
T 2cpd_A 78 GSPIEVTLAKPV 89 (99)
T ss_dssp TEEEEEECCCCC
T ss_pred CcEEEEEECCCC
Confidence 999999998743
No 313
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=7.7e-13 Score=115.16 Aligned_cols=74 Identities=26% Similarity=0.320 Sum_probs=69.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|. +|||||+|.+.++|..|+..||+..|.|+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIE--------CDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCE--------EEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 7799999999999999999999999999998 8887 34999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 73 ~l~V~~a~~~ 82 (92)
T 2dgt_A 73 RMHVQLSTSR 82 (92)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEEccCC
Confidence 9999998743
No 314
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.43 E-value=3.8e-14 Score=133.21 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=72.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+++|+++|+++|++|| |.. |+|++|+. |+++|||||+|.+.++|..|| .+|+..|.|+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~--------v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVR--------VHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE--------EECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE--------EEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 668999999999999999999999999 556 99999998 999999999999999999999 6899999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
.|.|..+..
T Consensus 114 ~i~V~~a~~ 122 (139)
T 2hgn_A 114 YIELFLNST 122 (139)
T ss_dssp CCCCEECCC
T ss_pred EEEEEECCC
Confidence 999988763
No 315
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=9e-14 Score=123.42 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=68.4
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc--ee
Q psy2160 214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY--EI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~--~l 290 (773)
.+++|||+|||. ++|+++|+++|++||.|.. |+|+++ +|||||+|.+.++|..||+.||+. .|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~--------v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 79 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISN--------HLILNK------INEAFIEMATTEDAQAAVDYYTTTPALV 79 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEE--------EEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEE--------EEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceE
Confidence 568999999999 9999999999999999998 888764 479999999999999999988864 59
Q ss_pred cCeEEEEEeecc
Q psy2160 291 RGKKIKVERAKF 302 (773)
Q Consensus 291 ~g~~I~V~~A~~ 302 (773)
.|++|+|++|..
T Consensus 80 ~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 80 FGKPVRVHLSQK 91 (102)
T ss_dssp TTEECEEEEECC
T ss_pred CCcEEEEEECCC
Confidence 999999999873
No 316
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.42 E-value=2.5e-13 Score=133.40 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||.++|+++|+++|+.||.|. .|.|..+. +|.++|||||+|.+.++|..|+..|||..|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~ 155 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLK--------KAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLD 155 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCS--------EEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 34578999999999999999999999999998 79999998 7999999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 156 Gr~l~V~~a~~ 166 (177)
T 2f3j_A 156 GRPMDIQLVAS 166 (177)
T ss_dssp SSBCEEEEESS
T ss_pred CEEEEEEEecC
Confidence 99999999984
No 317
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.4e-13 Score=119.45 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=69.0
Q ss_pred CccEEEEcCCCC-CCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~-~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||. ++|+++|+++|++||.|.. |+|. +|||||+|.+.++|..||..||+..+.|
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQ--------INIK--------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCE--------EEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEE--------EEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 779999999998 9999999999999999998 8884 6899999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 73 ~~l~V~~a~~ 82 (96)
T 2kvi_A 73 KKLILEVSSS 82 (96)
T ss_dssp TTBCEEEEEC
T ss_pred cEEEEEEcCc
Confidence 9999999874
No 318
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.8e-13 Score=117.30 Aligned_cols=74 Identities=23% Similarity=0.332 Sum_probs=67.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCc-ccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC-ceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG-YEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~-I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng-~~l~ 291 (773)
..++|||+|||.++|+++|+++|++||. |.. +.+. ++|||||+|.+.++|..||+.||+ ..|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~--------~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 71 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAG--------QVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELH 71 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSS--------CEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEET
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEE--------EEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeEC
Confidence 6799999999999999999999999999 554 5552 378999999999999999999999 9999
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|+|.+|..
T Consensus 72 g~~l~v~~a~~ 82 (93)
T 2cqh_A 72 GKIMEVDYSVS 82 (93)
T ss_dssp TEECEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999874
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.42 E-value=6.1e-13 Score=119.95 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||.+ +|+++|+++|++||.|.. |+| ++|||||+|.+.++|..||+.||+..|.|
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAG--------CSV--------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSE--------EEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEE--------EEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 6699999999999 999999999999999998 888 47899999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 90 ~~l~V~~a~~ 99 (110)
T 1wf1_A 90 QTLDINMAGE 99 (110)
T ss_dssp EECCEEESCC
T ss_pred eEEEEEECCC
Confidence 9999999863
No 320
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-13 Score=120.75 Aligned_cols=77 Identities=18% Similarity=0.265 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .+ ..+|.++|||||+|.+.++|..|+..|||..|.|
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~--------~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR--------LV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC--------CE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE--------Ee-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3568999999999999999999999999987 34 2347899999999999999999999999999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.|.+|..
T Consensus 81 ~~l~v~~a~~ 90 (96)
T 1fjc_A 81 RSVSLYYTGE 90 (96)
T ss_dssp EEEEEEECSS
T ss_pred eEEEEEEcCC
Confidence 9999999973
No 321
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=4.1e-13 Score=119.58 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=69.0
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+ +|||||+|.+.++|..||..||+..|.|+
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~--------v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLER--------VKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEE--------EEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEE--------EEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 6799999999999999999999999999998 8876 45999999999999999999999999999
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|+|.+|...
T Consensus 74 ~l~v~~a~~~ 83 (103)
T 2dgu_A 74 NIEIVFAKPP 83 (103)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEcCCC
Confidence 9999998743
No 322
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.41 E-value=5.3e-13 Score=118.83 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|++||.|. .|+|+ +|||||+|.+.++|..|+..|||..|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~--------~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLE--------RVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEE--------EEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE--------EEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 3568999999999999999999999999998 68776 5699999999999999999999999999
Q ss_pred eEEEEEEcccc
Q psy2160 578 KKIKVERAKFT 588 (773)
Q Consensus 578 ~~i~V~~a~~~ 588 (773)
+.|.|.+|...
T Consensus 73 ~~l~v~~a~~~ 83 (103)
T 2dgu_A 73 ENIEIVFAKPP 83 (103)
T ss_dssp EEEEEEECCCC
T ss_pred CEEEEEEcCCC
Confidence 99999999843
No 323
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.7e-13 Score=116.02 Aligned_cols=73 Identities=25% Similarity=0.412 Sum_probs=68.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|.+ |||||+|.+.++|..||..||+..|.|+
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIE--------CDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEE--------EEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEE--------EEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 6799999999999999999999999999998 88873 4999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 72 ~l~v~~a~~ 80 (90)
T 2dnp_A 72 RINVELSTK 80 (90)
T ss_dssp ECEEEESCC
T ss_pred EEEEEECCC
Confidence 999999874
No 324
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.1e-13 Score=124.66 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=69.2
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC--Cc
Q psy2160 497 AQENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD--GY 573 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln--g~ 573 (773)
..+.++|||+|||.+ +|+++|+++|++||.|. +|.|++ ++|||||+|.+.++|..|++.|| +.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~--------~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~ 87 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIK--------NYILMR------MKSQAFIEMETREDAMAMVDHCLKKAL 87 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCS--------EEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEE--------EEEEec------CCCEEEEEECCHHHHHHHHHHhccCCc
Confidence 446789999999998 99999999999999999 788873 37999999999999999999886 45
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|++|+|.+|+.
T Consensus 88 ~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 88 WFQGRCVKVDLSEK 101 (112)
T ss_dssp CSSSSCCEEEEECS
T ss_pred eECCEEEEEEECcc
Confidence 69999999999973
No 325
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=4.4e-13 Score=126.87 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=72.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
..++++|||+|||.++|+++|+.+|+.||.|..........|++.. +|.++|||||+|.+.++|..||..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~---~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK---EGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE---ETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc---CCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999998721000000133332 4889999999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|+.
T Consensus 119 g~~l~V~~a~~ 129 (143)
T 3egn_A 119 GKPMVVQFARS 129 (143)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEECCC
Confidence 99999999984
No 326
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=5.4e-13 Score=115.22 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=68.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++| .|.. |+|. +++|||||+|.+.++|..|++.|||..+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~--------~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKY--------CYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCC--------EEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE--------EEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 56899999999999999999999999 8887 8884 5689999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|++|..
T Consensus 69 ~l~V~~a~~ 77 (88)
T 1wg1_A 69 DLIVQLQPT 77 (88)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999864
No 327
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=118.89 Aligned_cols=77 Identities=25% Similarity=0.324 Sum_probs=70.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeE-EEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i-~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.+++|||+|||+++|+++|+++|++||.|.. | .|+.++.+| .|||+|.+.++|..||..|||..|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g 81 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVES--------CEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLEN 81 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEE--------EEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEE--------EEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 6799999999999999999999999999998 8 488776633 49999999999999999999999999
Q ss_pred eEEEEEeecc
Q psy2160 293 KKIKVERAKF 302 (773)
Q Consensus 293 ~~I~V~~A~~ 302 (773)
++|+|.+|..
T Consensus 82 ~~l~V~~a~~ 91 (96)
T 2e44_A 82 FTLKVAYIPD 91 (96)
T ss_dssp CBCEEEECCC
T ss_pred cEEEEEEcCc
Confidence 9999999874
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.7e-13 Score=118.25 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 497 AQENTKVYVSNLPL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~-~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
..+.++|||+|||. ++|+++|+++|++||.|. .|.|. +|||||+|.+.++|..|+..|||..+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIM--------QINIK--------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCC--------EEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEE--------EEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 45679999999998 999999999999999998 68874 78999999999999999999999999
Q ss_pred cCeEEEEEEccc
Q psy2160 576 RGKKIKVERAKF 587 (773)
Q Consensus 576 ~g~~i~V~~a~~ 587 (773)
.|++|+|.+++.
T Consensus 71 ~g~~l~V~~a~~ 82 (96)
T 2kvi_A 71 FGKKLILEVSSS 82 (96)
T ss_dssp BTTTBCEEEEEC
T ss_pred CCcEEEEEEcCc
Confidence 999999999984
No 329
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.40 E-value=1.8e-13 Score=126.31 Aligned_cols=81 Identities=25% Similarity=0.347 Sum_probs=72.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|||+++|+++|+++|+.|+.+.. .|+|++|+. |+++|||||+|.+.++|.+||. +++..|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~~i~~~-------~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~ 109 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGLEIVPN-------GITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIG 109 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTSCEEEE-------EEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcCCceee-------EEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEEC
Confidence 345689999999999999999999999966521 499999988 9999999999999999999997 5889999
Q ss_pred CeEEEEEEcc
Q psy2160 577 GKKIKVERAK 586 (773)
Q Consensus 577 g~~i~V~~a~ 586 (773)
|+.|.|..+.
T Consensus 110 gR~I~V~~a~ 119 (126)
T 2hgm_A 110 HRYIEVFKSS 119 (126)
T ss_dssp TBCCCCEEEC
T ss_pred CEEEEEEECC
Confidence 9999999886
No 330
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.40 E-value=4.6e-13 Score=149.83 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=77.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||+.+|+++|.++|++||.|.. |+|+.+..||.++|||||+|.+.++|..||..|||..|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~--------v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr 172 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKR--------IHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR 172 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE
Confidence 5689999999999999999999999999998 99999988899999999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|.|.+|..
T Consensus 173 ~i~V~~a~~ 181 (437)
T 3pgw_S 173 RVLVDVERG 181 (437)
T ss_pred EEEEEEeCC
Confidence 999999874
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.2e-12 Score=115.56 Aligned_cols=75 Identities=25% Similarity=0.336 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc--CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKC--GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI 575 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~--G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i 575 (773)
...++|||+|||.++|+++|+++|++| |.|. .|++. +|||||+|.+.++|..|+..|||..|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~--------~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVE--------RVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEE--------EEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceE--------EEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 457899999999999999999999999 8887 56653 68999999999999999999999999
Q ss_pred cCeEEEEEEcccc
Q psy2160 576 RGKKIKVERAKFT 588 (773)
Q Consensus 576 ~g~~i~V~~a~~~ 588 (773)
.|+.|+|.+|+..
T Consensus 77 ~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 77 DGSPIEVTLAKPV 89 (99)
T ss_dssp TTEEEEEECCCCC
T ss_pred CCcEEEEEECCCC
Confidence 9999999999843
No 332
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.1e-13 Score=117.12 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCc-ceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC-cee
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGL-VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG-YEI 575 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~-I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng-~~i 575 (773)
...++|||+|||.++|+++|+++|++||. |. .+.+. ++|||||+|.+.++|..|+..||| ..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~--------~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA--------GQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS--------SCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE--------EEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 45789999999999999999999999999 54 34442 489999999999999999999999 999
Q ss_pred cCeEEEEEEccc
Q psy2160 576 RGKKIKVERAKF 587 (773)
Q Consensus 576 ~g~~i~V~~a~~ 587 (773)
.|++|+|.+|..
T Consensus 71 ~g~~l~v~~a~~ 82 (93)
T 2cqh_A 71 HGKIMEVDYSVS 82 (93)
T ss_dssp TTEECEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999984
No 333
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=8e-13 Score=115.59 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. | +.+..+|+ ||||+|.+.++|..||. ||+..|.|+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVAS--------V--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEE--------E--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEE--------E--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 5689999999999999999999999999986 6 66666566 99999999999999999 999999999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|.|.+|.
T Consensus 73 ~l~V~~a~ 80 (94)
T 2e5g_A 73 RLRVRPRE 80 (94)
T ss_dssp ECCCBCSC
T ss_pred EEEEEECC
Confidence 99998775
No 334
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.39 E-value=5.7e-13 Score=115.06 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|++| .|. .|+|. .++|||||+|.+.++|..|+..|||..+.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~--------~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 68 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLK--------YCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK 68 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCC--------CEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeE--------EEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 56899999999999999999999999 787 57774 3689999999999999999999999999999
Q ss_pred EEEEEEccc
Q psy2160 579 KIKVERAKF 587 (773)
Q Consensus 579 ~i~V~~a~~ 587 (773)
+|+|.+|..
T Consensus 69 ~l~V~~a~~ 77 (88)
T 1wg1_A 69 DLIVQLQPT 77 (88)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEcCC
Confidence 999999873
No 335
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.39 E-value=8e-13 Score=119.17 Aligned_cols=74 Identities=20% Similarity=0.330 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++|||+|||.+ +|+++|+++|++||.|. .|.| ++|||||+|.+.++|..|+..|||..|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~--------~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 88 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVA--------GCSV--------HKGYAFVQYSNERHARAAVLGENGRVLA 88 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCS--------EEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeE--------EEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 34689999999999 99999999999999998 6877 3899999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|+|.+|..
T Consensus 89 g~~l~V~~a~~ 99 (110)
T 1wf1_A 89 GQTLDINMAGE 99 (110)
T ss_dssp TEECCEEESCC
T ss_pred CeEEEEEECCC
Confidence 99999999973
No 336
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4.7e-13 Score=117.44 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEE-EEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI-KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i-~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
...++|||+|||.++|+++|+++|++||.|. .| .|+.++.+ |.|||+|.+.++|..|+..|||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVE--------SCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEE--------EEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeE--------EEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3568999999999999999999999999998 78 48888753 44999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|+|.+|..
T Consensus 81 g~~l~V~~a~~ 91 (96)
T 2e44_A 81 NFTLKVAYIPD 91 (96)
T ss_dssp SCBCEEEECCC
T ss_pred CcEEEEEEcCc
Confidence 99999999984
No 337
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=1.2e-13 Score=129.92 Aligned_cols=79 Identities=14% Similarity=0.201 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.|| |. .|+|++|+. |+++|||||+|.+.++|.+|| .+|+..|.|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~--------~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g 112 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PV--------RVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQH 112 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CS--------EEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce--------EEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECC
Confidence 4568999999999999999999999999 55 599999987 999999999999999999999 799999999
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|.|..+..
T Consensus 113 R~i~V~~a~~ 122 (139)
T 2hgn_A 113 RYIELFLNST 122 (139)
T ss_dssp CCCCCEECCC
T ss_pred EEEEEEECCC
Confidence 9999998873
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.38 E-value=1.8e-12 Score=119.56 Aligned_cols=77 Identities=27% Similarity=0.331 Sum_probs=70.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceE-EEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~-AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.-.+|||+|||+.+|+++|+++|++||.|.+ |+|+.+ .+|| |||+|.+.++|..|++.|||..|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~--------V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEE--------EEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEE--------EEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 5578999999999999999999999999998 988764 2577 9999999999999999999999988
Q ss_pred --eEEEEEeeccc
Q psy2160 293 --KKIKVERAKFT 303 (773)
Q Consensus 293 --~~I~V~~A~~~ 303 (773)
++|+|++|+..
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 99999999854
No 339
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=1.1e-12 Score=119.75 Aligned_cols=82 Identities=28% Similarity=0.573 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeCC--------CCCeEEEEEecCHHHHHHHHHHhC
Q psy2160 348 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK--------HPEGVAQIFFKEPEAADACRELLN 419 (773)
Q Consensus 348 ~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d~--------~~~G~afV~F~~~e~A~~Ai~~ln 419 (773)
.+++|+|+||++|.++.+ +++++|+++|++||.|.+|.|+.. ++.|++||.|.+.++|.+|+..||
T Consensus 19 ps~vl~L~Nm~~~~el~d------dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~Ln 92 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 92 (118)
T ss_dssp SCCEEEEESCSCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHH------HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHC
Confidence 488999999999988764 477999999999999999988743 235899999999999999999999
Q ss_pred CcccCCeeEEEEecCC
Q psy2160 420 GRWFGQRQITAETWDG 435 (773)
Q Consensus 420 g~~~~Gr~I~v~~~~~ 435 (773)
|+.|+||.|.|.+++.
T Consensus 93 Gr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 93 GRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TCEETTEECEEEEECH
T ss_pred CCEECCcEEEEEEcCh
Confidence 9999999999998763
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.38 E-value=7.8e-13 Score=113.62 Aligned_cols=71 Identities=23% Similarity=0.492 Sum_probs=64.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhc----C-------cccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHH
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL 282 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~----G-------~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al 282 (773)
..++|||+|||.++|+++|+++|++| | .|.. |++.+ .+|||||+|.+.++|..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~--------~~~~~------~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA--------VQINQ------DKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEE--------EEECS------SSSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceE--------EEecC------CCcEEEEEcCCHHHHHHHH
Confidence 67999999999999999999999999 7 6665 66653 3789999999999999999
Q ss_pred HHcCCceecCeEEEEEe
Q psy2160 283 SILDGYEIRGKKIKVER 299 (773)
Q Consensus 283 ~~lng~~l~g~~I~V~~ 299 (773)
.||+..|.|++|+|++
T Consensus 71 -~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -GGTTCEETTEECEEEC
T ss_pred -hcCCCEECCeEEEEeC
Confidence 8999999999999975
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.7e-13 Score=121.57 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=64.1
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCC---CCcceEEEEEecChHHHHHHHHHcCCcee
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYEI 290 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~t---g~~kG~AfV~F~~~esA~~Al~~lng~~l 290 (773)
..++|||+|||.++|+++|+++|++||.|. +.++.+..| |+++|||||+|.+.++|..||+.|+ .+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~ 75 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EE 75 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hc
Confidence 679999999999999999999999999998 577777776 7999999999999999999999883 24
Q ss_pred cCeEEEEE
Q psy2160 291 RGKKIKVE 298 (773)
Q Consensus 291 ~g~~I~V~ 298 (773)
.|+.|.+.
T Consensus 76 ~G~~~~~~ 83 (114)
T 2dnl_A 76 DGKLYLCV 83 (114)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEec
Confidence 55555554
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.37 E-value=1.9e-12 Score=115.75 Aligned_cols=81 Identities=21% Similarity=0.129 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-CCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 498 QENTKVYVSNLPL-----DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-KDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 498 ~~~~~l~V~nLp~-----~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
.+.++|+|+||.. +-++++|++.|++||.|. +|.|++++.+ +.++|+|||+|.++++|.+|+..||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~--------~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVG--------KCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEE--------EEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEE--------EEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 4678999999962 237899999999999999 8999998754 6889999999999999999999999
Q ss_pred CceecCeEEEEEEcc
Q psy2160 572 GYEIRGKKIKVERAK 586 (773)
Q Consensus 572 g~~i~g~~i~V~~a~ 586 (773)
|..|.|+.|+|.++.
T Consensus 78 G~~~~Gr~i~v~~a~ 92 (105)
T 2pe8_A 78 GRYFGGRVVKACFYN 92 (105)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEECCcEEEEEEcC
Confidence 999999999999987
No 343
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=7.2e-13 Score=113.77 Aligned_cols=71 Identities=25% Similarity=0.409 Sum_probs=63.0
Q ss_pred CCCEEEEcCCCCCCCHHH----HHHHHHhcC-cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 499 ENTKVYVSNLPLDLTQEE----FVEVMQKCG-LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~----L~~~F~~~G-~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
..+.|||+|||.++++++ |+++|++|| .|. +| +| |+|||.|.+.++|.+|++.|||.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl--------~V-------tg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVL--------SI-------TG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEE--------EC-------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeE--------EE-------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 345599999999999988 558999995 887 34 34 99999999999999999999999
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|++|+|++|+.
T Consensus 70 ~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 70 DVFGNRIIVSFTPK 83 (96)
T ss_dssp CSSSSCCEEESSCC
T ss_pred ccCCceEEEEecCC
Confidence 99999999999984
No 344
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.9e-13 Score=119.26 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=68.1
Q ss_pred CCCCCEEEE--cCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 497 AQENTKVYV--SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 497 ~~~~~~l~V--~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
..+.++||| +|||.++|+++|+++|++||.|. +|.|+. .+|||||+|.+.++|..|++.|||..
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~--------~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~ 87 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 87 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEE--------EEECCT------TCSCEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 345789999 77999999999999999999998 677653 27999999999999999999999999
Q ss_pred e-----cCeEEEEEEcc
Q psy2160 575 I-----RGKKIKVERAK 586 (773)
Q Consensus 575 i-----~g~~i~V~~a~ 586 (773)
| .|++|.|.+|.
T Consensus 88 ~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 88 VVDDLGQKITLYLNFVE 104 (114)
T ss_dssp EECTTSCEEECEEEEES
T ss_pred EccccCCCcEEEEEecc
Confidence 8 68999999987
No 345
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.5e-13 Score=115.13 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=68.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
...++|||+|||.++|+++|+++|+.||.|. .| +.+..+|. ||||+|.+.++|..||. |||..|.|
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g 71 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVA--------SV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGG 71 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEE--------EE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeE--------EE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECC
Confidence 3567999999999999999999999999998 55 66766554 99999999999999999 99999999
Q ss_pred eEEEEEEcc
Q psy2160 578 KKIKVERAK 586 (773)
Q Consensus 578 ~~i~V~~a~ 586 (773)
+.|.|.+|.
T Consensus 72 ~~l~V~~a~ 80 (94)
T 2e5g_A 72 HRLRVRPRE 80 (94)
T ss_dssp EECCCBCSC
T ss_pred EEEEEEECC
Confidence 999999886
No 346
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.36 E-value=1.8e-12 Score=124.20 Aligned_cols=78 Identities=27% Similarity=0.344 Sum_probs=70.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
.-.+|||+|||+.+|+++|+++|++||.|.+ |+|+.+ .++|||||+|.+.++|..|++.|||..|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~--------V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~ 112 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLK--------IITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNA 112 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEE--------EEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 5578999999999999999999999999998 888753 357999999999999999999999999965
Q ss_pred -eEEEEEeeccc
Q psy2160 293 -KKIKVERAKFT 303 (773)
Q Consensus 293 -~~I~V~~A~~~ 303 (773)
++|+|++|+..
T Consensus 113 g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 113 CCTLRIDFSKLT 124 (164)
T ss_dssp CSCEEEEECSSS
T ss_pred CcEEEEEEecCC
Confidence 99999999854
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.36 E-value=2.1e-12 Score=119.21 Aligned_cols=77 Identities=27% Similarity=0.336 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce-EEEEeCChHHHHHHHHHhCCceecC
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~-afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.-..|||+|||..+|+++|+++|++||.|. +|+|+.+. +|+ |||+|.+.++|..|++.|||..|.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~--------~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEE--------EEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEE--------EEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 446788999999999999999999999999 79887642 677 9999999999999999999999998
Q ss_pred --eEEEEEEcccc
Q psy2160 578 --KKIKVERAKFT 588 (773)
Q Consensus 578 --~~i~V~~a~~~ 588 (773)
+.|+|++|+..
T Consensus 94 ~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 94 ACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEECSCS
T ss_pred CCcEEEEEecCCC
Confidence 89999999853
No 348
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.36 E-value=1.3e-12 Score=130.06 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=72.4
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|+++|++||.|.. |+|.++.. |.++|||||+|.+.++|..||..++ ..|.|+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~--------v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr 177 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLN--------IQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKET 177 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEE--------EEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEE--------EEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCE
Confidence 5689999999999999999999999999998 99999987 9999999999999999999998554 589999
Q ss_pred EEEEEeec
Q psy2160 294 KIKVERAK 301 (773)
Q Consensus 294 ~I~V~~A~ 301 (773)
+|.|.++.
T Consensus 178 ~l~V~~~~ 185 (193)
T 2voo_A 178 DLLILFKD 185 (193)
T ss_dssp ECEEEETT
T ss_pred EEEEEEhH
Confidence 99998765
No 349
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.5e-12 Score=113.09 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=67.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|| ++|+++|+++|++||.|.. |+|. .++|||||+|.+.++|..||..||+..|.|+
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~--------v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEE--------EEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEE--------EEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 6799999996 9999999999999999988 8873 5688999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 78 ~l~v~~a~~ 86 (97)
T 1x5p_A 78 QLKVNIARK 86 (97)
T ss_dssp EEEEECCSS
T ss_pred EEEEEECCC
Confidence 999999874
No 350
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.35 E-value=1.6e-12 Score=112.62 Aligned_cols=72 Identities=24% Similarity=0.392 Sum_probs=62.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCce--ec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE--IR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~--l~ 291 (773)
..++|||+|||+++|+++|+++|++||.|.+ |+|+++ ++|||||+|.+.++|.. +++.. ++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~--------v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~ 72 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVD--------VFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIK 72 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEE--------EECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEE--------EEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccC
Confidence 7799999999999999999999999999998 898864 68999999999999983 45555 46
Q ss_pred CeEEEEEeecc
Q psy2160 292 GKKIKVERAKF 302 (773)
Q Consensus 292 g~~I~V~~A~~ 302 (773)
|++|.|..|..
T Consensus 73 g~~v~v~~a~~ 83 (89)
T 3d2w_A 73 GISVHISNAEP 83 (89)
T ss_dssp TEEEEEEECC-
T ss_pred CEEEEEEEcCC
Confidence 99999988863
No 351
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.34 E-value=1.6e-12 Score=111.63 Aligned_cols=71 Identities=24% Similarity=0.529 Sum_probs=64.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhc----C-------cceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHH
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKC----G-------LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLAL 567 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~----G-------~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai 567 (773)
..++|||+|||.++|+++|+++|+.| | .|. +|++..+ +|||||+|.+.++|..|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~--------~~~~~~~------kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVL--------AVQINQD------KNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEE--------EEEECSS------SSEEEEEESSHHHHHHHG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcce--------EEEecCC------CcEEEEEcCCHHHHHHHH
Confidence 46899999999999999999999999 8 676 6777644 799999999999999999
Q ss_pred HHhCCceecCeEEEEEE
Q psy2160 568 SILDGYEIRGKKIKVER 584 (773)
Q Consensus 568 ~~lng~~i~g~~i~V~~ 584 (773)
.|||..|.|+.|+|++
T Consensus 71 -~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 71 -AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp -GGTTCEETTEECEEEC
T ss_pred -hcCCCEECCeEEEEeC
Confidence 9999999999999975
No 352
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.9e-12 Score=112.68 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=68.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|| ++|+++|+++|++||.|. .|.|. .++|||||+|.+.++|..||..|||..|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~--------~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~ 75 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNII--------DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE 75 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEE--------EEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEET
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEE--------EEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 346789999996 899999999999999998 68874 35899999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|++|+|.+|..
T Consensus 76 g~~l~v~~a~~ 86 (97)
T 1x5p_A 76 SVQLKVNIARK 86 (97)
T ss_dssp TEEEEEECCSS
T ss_pred CeEEEEEECCC
Confidence 99999999984
No 353
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.34 E-value=2.2e-12 Score=123.52 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecC-
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 577 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g- 577 (773)
...+|||+|||..+|+++|+++|++||.|. +|.|+.+. ++|||||+|.+.++|..|++.|||..|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~--------~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~ 112 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVL--------KIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNA 112 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEE--------EEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEE--------EEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCC
Confidence 346799999999999999999999999999 78887543 47899999999999999999999999965
Q ss_pred -eEEEEEEcccc
Q psy2160 578 -KKIKVERAKFT 588 (773)
Q Consensus 578 -~~i~V~~a~~~ 588 (773)
+.|+|++|+..
T Consensus 113 g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 113 CCTLRIDFSKLT 124 (164)
T ss_dssp CSCEEEEECSSS
T ss_pred CcEEEEEEecCC
Confidence 99999999843
No 354
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.34 E-value=8.1e-13 Score=120.25 Aligned_cols=73 Identities=26% Similarity=0.460 Sum_probs=65.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
..++|||+|||.++|+++|.++|++||.|.. |.|+.+ |||||+|.+.++|..||+.||+..|.|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~--------~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCY--------ADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEE--------EEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEE--------EEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 6799999999999999999999999999998 888765 8999999999999999999999999998
Q ss_pred E-----EEEEeec
Q psy2160 294 K-----IKVERAK 301 (773)
Q Consensus 294 ~-----I~V~~A~ 301 (773)
+ |+|..+.
T Consensus 80 ~~~~~~i~v~~~~ 92 (115)
T 3beg_B 80 EGETAYIRVKVDG 92 (115)
T ss_dssp TSCCCBCEEEECC
T ss_pred EeeeEEEEeccCC
Confidence 8 6665544
No 355
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.2e-12 Score=118.06 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=67.0
Q ss_pred CccEEEE--cCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCcee-
Q psy2160 214 ESTKVYV--SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI- 290 (773)
Q Consensus 214 ~~~~VyV--~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l- 290 (773)
..++||| +|||.++|+++|+++|++||.|.. |.|+. + +|||||+|.+.++|..|++.|||..|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~--------v~i~~----~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~ 89 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP----N--KPYSFARYRTTEESKRAYVTLNGKEVV 89 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEE--------EECCT----T--CSCEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC----C--CCEEEEEECCHHHHHHHHHHhCCCEEc
Confidence 4578999 779999999999999999999987 77753 2 78999999999999999999999998
Q ss_pred ----cCeEEEEEeec
Q psy2160 291 ----RGKKIKVERAK 301 (773)
Q Consensus 291 ----~g~~I~V~~A~ 301 (773)
.|++|.|.++.
T Consensus 90 ~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 90 DDLGQKITLYLNFVE 104 (114)
T ss_dssp CTTSCEEECEEEEES
T ss_pred cccCCCcEEEEEecc
Confidence 68999999987
No 356
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=118.58 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=66.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC---CCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT---KDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t---g~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
...++|||+|||.++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|..||+.|+ .
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~---------~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~ 74 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV---------VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--E 74 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC---------EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--E
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE---------EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--h
Confidence 4578999999999999999999999999997 777777776 7999999999999999999999984 3
Q ss_pred ecCeEEEEEEc
Q psy2160 575 IRGKKIKVERA 585 (773)
Q Consensus 575 i~g~~i~V~~a 585 (773)
+.|+.|.+..+
T Consensus 75 ~~G~~~~~~~~ 85 (114)
T 2dnl_A 75 EDGKLYLCVSS 85 (114)
T ss_dssp ETTEEEEEECC
T ss_pred cCCcEEEeccC
Confidence 56666666544
No 357
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=3.6e-12 Score=110.34 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=62.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCcee-
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEI- 575 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i- 575 (773)
..+.++|||+|||.++|+++|+++|++||.|. +|+|+++ ++|||||+|.+.++|.. |+|..+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~--------~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~ 70 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVV--------DVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLI 70 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEE--------EEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEE--------EEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcc
Confidence 45679999999999999999999999999999 7998875 58999999999999983 556554
Q ss_pred -cCeEEEEEEcc
Q psy2160 576 -RGKKIKVERAK 586 (773)
Q Consensus 576 -~g~~i~V~~a~ 586 (773)
.|+.|.|.+|.
T Consensus 71 ~~g~~v~v~~a~ 82 (89)
T 3d2w_A 71 IKGISVHISNAE 82 (89)
T ss_dssp ETTEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 59999999988
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.32 E-value=8.2e-12 Score=114.68 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=67.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceE-EEEEecChHHHHHHHHHcCCceecC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~-AfV~F~~~esA~~Al~~lng~~l~g 292 (773)
.-..|||+|||+.+|+++|+++|++||.|.. |+|+.. .|| |||+|.+.++|..|++.|||..|.|
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~--------v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQR--------IVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEE--------EEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 4456899999999999999999999999998 888752 276 9999999999999999999999987
Q ss_pred --eEEEEEeeccc
Q psy2160 293 --KKIKVERAKFT 303 (773)
Q Consensus 293 --~~I~V~~A~~~ 303 (773)
++|+|.+|+..
T Consensus 90 ~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 90 GCCTLKIEYARPT 102 (124)
T ss_dssp TBSEEEEECCSCS
T ss_pred CCeEEEEEEecCC
Confidence 69999998753
No 359
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.30 E-value=1.8e-12 Score=117.92 Aligned_cols=73 Identities=26% Similarity=0.463 Sum_probs=65.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|++||.|. .|.|+.+ |||||+|.+.++|..||+.|||..|.|+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~--------~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVC--------YADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEE--------EEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeE--------EEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 468999999999999999999999999998 7888755 8999999999999999999999999998
Q ss_pred E-----EEEEEcc
Q psy2160 579 K-----IKVERAK 586 (773)
Q Consensus 579 ~-----i~V~~a~ 586 (773)
. |.|..+.
T Consensus 80 ~~~~~~i~v~~~~ 92 (115)
T 3beg_B 80 EGETAYIRVKVDG 92 (115)
T ss_dssp TSCCCBCEEEECC
T ss_pred EeeeEEEEeccCC
Confidence 8 6666555
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.30 E-value=6.9e-12 Score=115.17 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=66.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcce-EEEEeCChHHHHHHHHHhCCceecC--
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD-ALCTYIKKESVDLALSILDGYEIRG-- 577 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~-afV~f~~~e~A~~Ai~~lng~~i~g-- 577 (773)
..|||+|||..+|+++|+++|++||.|. +|+|+.. .|| |||+|.+.++|..|++.|||..|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~--------~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~ 91 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQ--------RIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGC 91 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEE--------EEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTB
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEE--------EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCC
Confidence 4578999999999999999999999999 7888642 386 9999999999999999999999987
Q ss_pred eEEEEEEccc
Q psy2160 578 KKIKVERAKF 587 (773)
Q Consensus 578 ~~i~V~~a~~ 587 (773)
+.|+|.+|+.
T Consensus 92 ~~l~V~~Ak~ 101 (124)
T 2e5i_A 92 CTLKIEYARP 101 (124)
T ss_dssp SEEEEECCSC
T ss_pred eEEEEEEecC
Confidence 6999999984
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2e-12 Score=111.56 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=63.8
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|||.++|+++|+++|++||.|.. |+|+++ ++|||||+|.+.++|+.|+.. ...+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~ 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMD--------VFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGI 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCE--------EECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeE--------EEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCE
Confidence 5799999999999999999999999999998 888754 689999999999999765331 3345899
Q ss_pred EEEEEeeccc
Q psy2160 294 KIKVERAKFT 303 (773)
Q Consensus 294 ~I~V~~A~~~ 303 (773)
+|.|.+|...
T Consensus 69 ~l~v~~a~~~ 78 (88)
T 1wf0_A 69 SVHISNAEPK 78 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999888743
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.29 E-value=6.6e-12 Score=125.04 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeE
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKK 579 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~ 579 (773)
.++|||+|||.++|+++|+++|++||.|. .|+|.++.. |.++|||||+|.+.++|..|+..++ ..|.|++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~--------~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~ 178 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVL--------NIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETD 178 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEE--------EEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEE--------EEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEE
Confidence 47999999999999999999999999999 799999875 8999999999999999999997655 5899999
Q ss_pred EEEEEcc
Q psy2160 580 IKVERAK 586 (773)
Q Consensus 580 i~V~~a~ 586 (773)
|.|.+++
T Consensus 179 l~V~~~~ 185 (193)
T 2voo_A 179 LLILFKD 185 (193)
T ss_dssp CEEEETT
T ss_pred EEEEEhH
Confidence 9999877
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=8e-12 Score=114.73 Aligned_cols=75 Identities=24% Similarity=0.351 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceec
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 576 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~ 576 (773)
....++|||+|| ++|+++|+++|++||.|. .|.|. .++|||||+|.+.++|..|+..|||..|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~--------~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~ 99 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNII--------DLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVE 99 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCS--------CEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEE--------EEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 456799999996 699999999999999998 68885 35899999999999999999999999999
Q ss_pred CeEEEEEEccc
Q psy2160 577 GKKIKVERAKF 587 (773)
Q Consensus 577 g~~i~V~~a~~ 587 (773)
|+.|.|.+|..
T Consensus 100 g~~l~V~~a~~ 110 (121)
T 2bz2_A 100 SVQLKVNIARK 110 (121)
T ss_dssp SCBCEEEECCS
T ss_pred CeEEEEEEeCC
Confidence 99999999984
No 364
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.27 E-value=9.7e-12 Score=114.17 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=67.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecCe
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 293 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g~ 293 (773)
.+++|||+|| ++|+++|+++|++||.|.. |.|. .++|||||+|.+.++|..||..||+..|.|+
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~--------v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~ 101 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIID--------LSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESV 101 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSC--------EEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEE--------EEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 6799999996 7999999999999999998 8884 5688999999999999999999999999999
Q ss_pred EEEEEeecc
Q psy2160 294 KIKVERAKF 302 (773)
Q Consensus 294 ~I~V~~A~~ 302 (773)
+|+|.+|..
T Consensus 102 ~l~V~~a~~ 110 (121)
T 2bz2_A 102 QLKVNIARK 110 (121)
T ss_dssp BCEEEECCS
T ss_pred EEEEEEeCC
Confidence 999999874
No 365
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=7.5e-12 Score=107.87 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=63.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCe
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGK 578 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~ 578 (773)
..++|||+|||.++|+++|+++|++||.|. .|+|+.+ ++|||||+|.+.++|+.|+. .+..+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~ 68 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVM--------DVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGI 68 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCC--------EEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCee--------EEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCE
Confidence 568999999999999999999999999998 7888865 58999999999999976432 13445899
Q ss_pred EEEEEEcccc
Q psy2160 579 KIKVERAKFT 588 (773)
Q Consensus 579 ~i~V~~a~~~ 588 (773)
+|.|.++...
T Consensus 69 ~l~v~~a~~~ 78 (88)
T 1wf0_A 69 SVHISNAEPK 78 (88)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998843
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.19 E-value=6.7e-12 Score=111.98 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=65.9
Q ss_pred EEcCCCCCCCHHHHHHHH------------hhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160 219 YVSNLPLDLTQEEFVEVM------------QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 286 (773)
Q Consensus 219 yV~nLP~~~te~el~~~F------------s~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln 286 (773)
.+.|||..+|+++|+++| ++||.|.+ |+|+++.. |+++|||||.|.+.++|..|+..||
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~--------v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~ln 89 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEE--------MNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLN 89 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--------EEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHT
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEE--------EEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHC
Confidence 467888888888888777 99999999 99999887 8999999999999999999999999
Q ss_pred CceecCeEEEEEee
Q psy2160 287 GYEIRGKKIKVERA 300 (773)
Q Consensus 287 g~~l~g~~I~V~~A 300 (773)
|..|.|++|+|.++
T Consensus 90 g~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 90 NRWFNGQPIHAELS 103 (104)
T ss_dssp TCEETTEECCEEEC
T ss_pred CCEECCEEEEEEEc
Confidence 99999999999875
No 367
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2e-11 Score=124.58 Aligned_cols=76 Identities=16% Similarity=0.269 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH
Q psy2160 498 QENTKVYVSNLPLDL---------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 568 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~---------t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~ 568 (773)
..+++|||+|||..+ |+++|+.+|++||.|. +|+|+.+ +|||||+|.+.++|..|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~--------~v~v~~~------kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDID--------RIRYVES------KNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEE--------EEEEEGG------GTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEE--------EEEEECC------CCEEEEEeCCHHHHHHHHH
Confidence 467999999999998 7999999999999999 7998853 8999999999999999999
Q ss_pred HhCCcee------------cCeEEEEEEccc
Q psy2160 569 ILDGYEI------------RGKKIKVERAKF 587 (773)
Q Consensus 569 ~lng~~i------------~g~~i~V~~a~~ 587 (773)
.|+|..| .|+.|.|.+|..
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 9999999 899999999983
No 368
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.19 E-value=2.1e-11 Score=124.56 Aligned_cols=75 Identities=15% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCccEEEEcCCCCCC---------CHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160 213 EESTKVYVSNLPLDL---------TQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283 (773)
Q Consensus 213 ~~~~~VyV~nLP~~~---------te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~ 283 (773)
+.+++|||+|||..+ |+++|+++|++||.|.. |+|+. ++|||||+|.+.++|..|++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~--------v~v~~------~kG~AFV~F~~~~~Ae~A~~ 197 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDR--------IRYVE------SKNCGFVKFKYQANAEFAKE 197 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEE--------EEEEG------GGTEEEEEESSHHHHHHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEE--------EEEEC------CCCEEEEEeCCHHHHHHHHH
Confidence 378999999999998 79999999999999998 99985 37899999999999999999
Q ss_pred HcCCcee------------cCeEEEEEeec
Q psy2160 284 ILDGYEI------------RGKKIKVERAK 301 (773)
Q Consensus 284 ~lng~~l------------~g~~I~V~~A~ 301 (773)
.|+|..| .|+.|.|.+|.
T Consensus 198 am~g~~l~~~~~~e~~~~~~gr~L~V~wA~ 227 (240)
T 3u1l_A 198 AMSNQTLLLPSDKEWDDRREGTGLLVKWAN 227 (240)
T ss_dssp HHTTCCCCCTTSTTGGGGGGSCCCEEEECC
T ss_pred HhCCCEEeccccccccccCCCCEEEEEEcc
Confidence 9999999 89999999987
No 369
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.15 E-value=8.3e-11 Score=119.64 Aligned_cols=82 Identities=28% Similarity=0.567 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecC--------CCCCcEEEEEecCHHHHHHHHHHhC
Q psy2160 633 NESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD--------KHPEGVAQIFFKEPEAADACRELLN 704 (773)
Q Consensus 633 ~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~--------~~~~G~afV~F~~~e~A~~Ai~~ln 704 (773)
.++++.+.|++.+.++.+ ++.++|+++|++||.|.+|.|++ +.+.|++||+|.+.++|.+|+..||
T Consensus 123 ~s~v~~l~n~v~~~e~~~------e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~ 196 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN 196 (222)
T ss_dssp BCSEEEEESSCCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccchhhcCCCHHHHHH------HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhc
Confidence 458999999999877654 34689999999999999998873 2567999999999999999999999
Q ss_pred CceeCCeEEEEEEecC
Q psy2160 705 GRWFGQRQITAETWDG 720 (773)
Q Consensus 705 Gr~f~Gr~l~v~~~dg 720 (773)
||+|+||.|.|.||+.
T Consensus 197 gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 197 GRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TCBSSSSBCEEEECCH
T ss_pred CceECCeEEEEEEcCH
Confidence 9999999999999884
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4.3e-09 Score=92.82 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=62.6
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 500 NTKVYVSNLP-------LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 500 ~~~l~V~nLp-------~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
.++|.|.-.+ .++|+++|+++|++||.|. .|.|+ ++++|||||+|.+.++|..||+.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~--------~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVL--------NLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEE--------EEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEE--------EEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 4567776554 4689999999999999999 78887 35799999999999999999988655
Q ss_pred ceecCeEEEEEEcccc
Q psy2160 573 YEIRGKKIKVERAKFT 588 (773)
Q Consensus 573 ~~i~g~~i~V~~a~~~ 588 (773)
+.|++|+|.+|+..
T Consensus 77 --~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 77 --LVDNPLKISWLEGQ 90 (100)
T ss_dssp --CSSSBCEEECSSCC
T ss_pred --CCCCeEEEEEccCC
Confidence 67999999999843
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.2e-09 Score=92.29 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=61.1
Q ss_pred ccEEEEcCCC-------CCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 215 STKVYVSNLP-------LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 215 ~~~VyV~nLP-------~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
..+|-|.-.+ .++|+++|+++|++||.|.. |.|+ ++++|||||+|.+.++|..||+.+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~--------v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLN--------LVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEE--------EEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEE--------EEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 3455555443 56999999999999999998 8887 57899999999999999999997554
Q ss_pred ceecCeEEEEEeecc
Q psy2160 288 YEIRGKKIKVERAKF 302 (773)
Q Consensus 288 ~~l~g~~I~V~~A~~ 302 (773)
+.|++|+|.+|..
T Consensus 77 --~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 77 --LVDNPLKISWLEG 89 (100)
T ss_dssp --CSSSBCEEECSSC
T ss_pred --CCCCeEEEEEccC
Confidence 6799999998874
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.87 E-value=2.4e-09 Score=115.10 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=63.6
Q ss_pred CccEEEEcC--CCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSN--LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~n--LP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
...+|||+| |+..+|+++|+++|++||.|.. |.|.. .||||||+|.+.++|.+||+.|||..+.
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~--------v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDA--------LLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEE--------EECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEE--------EEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 568999999 5789999999999999999987 77643 4799999999999999999999999883
Q ss_pred ---Ce--EEEEEeec
Q psy2160 292 ---GK--KIKVERAK 301 (773)
Q Consensus 292 ---g~--~I~V~~A~ 301 (773)
|+ +|.|.++.
T Consensus 83 ~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 83 DDLGQKITLYLNFVE 97 (345)
T ss_dssp CTTSCEEECEEEECS
T ss_pred cccCCceEEEEEEee
Confidence 44 57776653
No 373
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.86 E-value=3.1e-09 Score=114.23 Aligned_cols=76 Identities=22% Similarity=0.372 Sum_probs=64.9
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCce
Q psy2160 497 AQENTKVYVSN--LPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYE 574 (773)
Q Consensus 497 ~~~~~~l~V~n--Lp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~ 574 (773)
..+..+|||+| |+..+|+++|+++|++||.|. +|.+.. ++|||||+|.+.++|++||+.|||..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~--------~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~ 80 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVD--------ALLMPP------NKPYSFARYRTTEESKRAYVTLNGKE 80 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEE--------EEECCT------TCSEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeE--------EEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCc
Confidence 45678999999 578999999999999999998 666642 37999999999999999999999999
Q ss_pred ec---Ce--EEEEEEcc
Q psy2160 575 IR---GK--KIKVERAK 586 (773)
Q Consensus 575 i~---g~--~i~V~~a~ 586 (773)
+. |+ .|.|.++.
T Consensus 81 ~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 81 VVDDLGQKITLYLNFVE 97 (345)
T ss_dssp EECTTSCEEECEEEECS
T ss_pred cccccCCceEEEEEEee
Confidence 84 45 67777764
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=3.9e-08 Score=83.71 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=63.4
Q ss_pred CCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy2160 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQR 711 (773)
Q Consensus 632 ~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr 711 (773)
++..+|+|...++..+ +.-+=.+|..+|.+.|++||.|..|.+..+. +||.|.+.++|.+||. |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~---~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPE---NNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTT---TCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccc---cccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 4567888888764211 1112234568899999999999999987743 8999999999999999 999999999
Q ss_pred EEEEEEec
Q psy2160 712 QITAETWD 719 (773)
Q Consensus 712 ~l~v~~~d 719 (773)
.|+|.+..
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998843
No 375
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.71 E-value=4.6e-08 Score=99.23 Aligned_cols=82 Identities=28% Similarity=0.572 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCccccchhhHHHHHHHHHHHHHhhccCCEEEEEeeC----C----CCCeEEEEEecCHHHHHHHHHHh
Q psy2160 347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----K----HPEGVAQIFFKEPEAADACRELL 418 (773)
Q Consensus 347 ~~~~~v~l~Nl~~p~~~~~d~~~~~ei~edL~e~f~k~G~V~~V~i~d----~----~~~G~afV~F~~~e~A~~Ai~~l 418 (773)
...+++.+.|++++.++.+ ++.++|+++|++||.|.+|.++. . ++.|++||+|.+.++|.+|+..|
T Consensus 122 ~~s~v~~l~n~v~~~e~~~------e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l 195 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDD------DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQAL 195 (222)
T ss_dssp CBCSEEEEESSCCGGGCCT------THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccchhhcCCCHHHHHH------HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHh
Confidence 3467899999998888765 35689999999999999998862 1 56799999999999999999999
Q ss_pred CCcccCCeeEEEEecC
Q psy2160 419 NGRWFGQRQITAETWD 434 (773)
Q Consensus 419 ng~~~~Gr~I~v~~~~ 434 (773)
||++|+||+|.+.+++
T Consensus 196 ~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 196 NGRWFAGRKVVAEVYD 211 (222)
T ss_dssp TTCBSSSSBCEEEECC
T ss_pred cCceECCeEEEEEEcC
Confidence 9999999999999875
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=4.8e-08 Score=88.56 Aligned_cols=75 Identities=11% Similarity=0.081 Sum_probs=66.7
Q ss_pred CCccEEEEcCCCCC-CCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecC-hHHHHHHHHHcC--Cc
Q psy2160 213 EESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK-KESVDLALSILD--GY 288 (773)
Q Consensus 213 ~~~~~VyV~nLP~~-~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~-~esA~~Al~~ln--g~ 288 (773)
+.++.|||+||+.+ ++.++|+++|+.||.|.. |.+.++.. .|||.|.+ ..+|..|+..|| +.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~--------Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKW--------IDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEE--------EECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEE--------EEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 38899999999999 999999999999999998 88887765 59999999 799999999994 77
Q ss_pred eecCeEEEEEeec
Q psy2160 289 EIRGKKIKVERAK 301 (773)
Q Consensus 289 ~l~g~~I~V~~A~ 301 (773)
.|.|..++++...
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 8899888887644
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=8.9e-08 Score=81.48 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=60.2
Q ss_pred CCCEEEEcCCCC----CCCH----HHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh
Q psy2160 499 ENTKVYVSNLPL----DLTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 570 (773)
Q Consensus 499 ~~~~l~V~nLp~----~~t~----e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l 570 (773)
+..+|+|.-+|. ..-. .+|.+.|+.||.|. .+++..|. +||+|.+.++|.+||+ |
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi--------~vr~~~d~--------~fVtF~d~~sAlaAi~-m 68 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVI--------LIRFVEDK--------MWVTFLEGSSALNVLS-L 68 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEE--------EEEECSSS--------EEEEESSHHHHHHGGG-G
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeE--------EEEEecCC--------EEEEECChHHHHHHHh-c
Confidence 456888877762 2333 67999999999888 78998763 8999999999999997 9
Q ss_pred CCceecCeEEEEEEcc
Q psy2160 571 DGYEIRGKKIKVERAK 586 (773)
Q Consensus 571 ng~~i~g~~i~V~~a~ 586 (773)
||..+.|+.|+|+.+.
T Consensus 69 nG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 69 NGKELLNRTITIALKS 84 (91)
T ss_dssp TTCEETTEEEEEEECC
T ss_pred CCeEeCCeEEEEEeCC
Confidence 9999999999999987
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1.3e-07 Score=80.90 Aligned_cols=80 Identities=10% Similarity=0.173 Sum_probs=62.9
Q ss_pred CCCCcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC
Q psy2160 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ 710 (773)
Q Consensus 631 ~~~~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G 710 (773)
.++..+|+|..++... ++..-|=.+|..+|.+.|+.||.|..|.+.... +||.|.+.++|.+||. |||..++|
T Consensus 12 GPpD~Tv~V~~~~~~~--~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTL--EEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCH--HHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCCCeEEEEecCCcc--cccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3566889998875321 111112234567899999999999999887743 9999999999999999 99999999
Q ss_pred eEEEEEE
Q psy2160 711 RQITAET 717 (773)
Q Consensus 711 r~l~v~~ 717 (773)
|.|+|.+
T Consensus 85 r~L~V~~ 91 (95)
T 1ufw_A 85 RAVKISG 91 (95)
T ss_dssp EEEEEEC
T ss_pred eEEEEec
Confidence 9999976
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.3e-07 Score=85.77 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=66.7
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCC-hHHHHHHHHHhC--Cc
Q psy2160 498 QENTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK-KESVDLALSILD--GY 573 (773)
Q Consensus 498 ~~~~~l~V~nLp~~-~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~-~e~A~~Ai~~ln--g~ 573 (773)
..++.|||+||+.+ ++.++|+++|+.||.|. .|.+.++.. .|||.|.+ +.+|..|+..|| +.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~--------~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIK--------WIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEE--------EEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEE--------EEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 46899999999999 99999999999999999 688887754 59999999 899999999995 78
Q ss_pred eecCeEEEEEEcc
Q psy2160 574 EIRGKKIKVERAK 586 (773)
Q Consensus 574 ~i~g~~i~V~~a~ 586 (773)
.|.|..++++...
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 8899988888765
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=5.9e-07 Score=76.79 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=59.9
Q ss_pred CCccEEEEcCCCCC-----CCH----HHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160 213 EESTKVYVSNLPLD-----LTQ----EEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283 (773)
Q Consensus 213 ~~~~~VyV~nLP~~-----~te----~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~ 283 (773)
|...||+|.-++.+ .-. .+|.+.|+.||.|.. |++..|. +||+|.+.++|.+||+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vil--------vr~v~d~--------~fVtF~d~~sAl~AI~ 76 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVL--------VRINQGQ--------MLVTFADSHSALSVLD 76 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSE--------EEEETTE--------EEEECSCSHHHHHHHH
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEE--------EEEecCc--------EEEEEcChHHHHHHHh
Confidence 46689999988743 222 568899999998887 9998764 8999999999999999
Q ss_pred HcCCceecCeEEEEEe
Q psy2160 284 ILDGYEIRGKKIKVER 299 (773)
Q Consensus 284 ~lng~~l~g~~I~V~~ 299 (773)
|||..+.||.|+|+.
T Consensus 77 -ldG~~v~Gr~L~V~~ 91 (95)
T 1ufw_A 77 -VDGMKVKGRAVKISG 91 (95)
T ss_dssp -GGGSEETTEEEEEEC
T ss_pred -cCCeeeCCeEEEEec
Confidence 999999999999965
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=2e-06 Score=74.84 Aligned_cols=71 Identities=23% Similarity=0.275 Sum_probs=64.7
Q ss_pred CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcC-----CceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCcee
Q psy2160 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKC-----GHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF 708 (773)
Q Consensus 634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~f-----G~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f 708 (773)
.++|.|.|+++. +.+ ..|+.+.+++ |.|.+|.+.+.+ |-|+|.|.+...|.+|..+|||..|
T Consensus 21 ~rtiaL~~ipDt--vnd---------arIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 21 ETLICLFPLSDK--VSP---------SLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp TSCEEEECCCTT--CCH---------HHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CcEEEEecCCCC--CCH---------HHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeee
Confidence 589999999876 554 7899999999 999999998877 8899999999999999999999999
Q ss_pred CCeEEEEEE
Q psy2160 709 GQRQITAET 717 (773)
Q Consensus 709 ~Gr~l~v~~ 717 (773)
.||+|+|.-
T Consensus 88 ~gr~Lr~gT 96 (117)
T 2l9w_A 88 QGKVIRSGT 96 (117)
T ss_dssp TTEEEEEEC
T ss_pred cCeEEEecC
Confidence 999999954
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=7.4e-06 Score=71.32 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhc-----CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 497 AQENTKVYVSNLPLDLTQEEFVEVMQKC-----GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 497 ~~~~~~l~V~nLp~~~t~e~L~~~F~~~-----G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
....++|-+-|||..++...|+.+...+ |.|. +|.|..|.. =|+|+|.+...|-+|.-.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~--------KI~L~pDH~------GAivef~d~~~AgKasLaL~ 83 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR--------KILLVSDFN------GAIIIFRDSKFAAKMLMILN 83 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS--------EEEEETTTT------EEEEECSCHHHHHHHHHHHS
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee--------EEEEecCCC------ceEEEEccchhhHHHHhhcC
Confidence 3457899999999999999999999999 9888 788887754 49999999999999999999
Q ss_pred CceecCeEEEEEEcc
Q psy2160 572 GYEIRGKKIKVERAK 586 (773)
Q Consensus 572 g~~i~g~~i~V~~a~ 586 (773)
|..|.|++|+|.-..
T Consensus 84 G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 84 GSQFQGKVIRSGTIN 98 (117)
T ss_dssp SEEETTEEEEEECHH
T ss_pred CeeecCeEEEecCHH
Confidence 999999999999655
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.73 E-value=6.6e-05 Score=65.27 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=65.2
Q ss_pred CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy2160 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713 (773)
Q Consensus 634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l 713 (773)
+.+|+|.|| ++..+.. .++++.++++|..|+.+......+.- .-+.|.|.++++|.+|...|+|..|.|++|
T Consensus 5 pntLiitnl-~~~vF~~-----~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 5 SSGLIACVA-NDDVFSE-----SETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp CCEEEEECC-CGGGGST-----TTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CceEEEecC-CHHHcCC-----HHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 478999999 5544443 34578999999999998887766633 468999999999999999999999999999
Q ss_pred EEEEec
Q psy2160 714 TAETWD 719 (773)
Q Consensus 714 ~v~~~d 719 (773)
+|+|..
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999854
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.23 E-value=0.00073 Score=58.72 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCCEEEEcCCCCCC-C----HHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCc
Q psy2160 499 ENTKVYVSNLPLDL-T----QEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 573 (773)
Q Consensus 499 ~~~~l~V~nLp~~~-t----~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~ 573 (773)
..++|+|.||+.++ + .+.++++|..|+.+. .....+.- .-..|.|.++++|.+|-..||+.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~--------tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDT--------TFQYFKSF------KRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSC--------EEEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCc--------ceeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence 46899999998876 2 267899999999988 56666442 35799999999999999999999
Q ss_pred eecCeEEEEEEccc
Q psy2160 574 EIRGKKIKVERAKF 587 (773)
Q Consensus 574 ~i~g~~i~V~~a~~ 587 (773)
.|.|+.|+|-+|+.
T Consensus 70 ~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 70 EFLGKEMKLYFAQT 83 (104)
T ss_dssp EETTEECEEECCCC
T ss_pred eecCceeEEEecCC
Confidence 99999999999983
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.79 E-value=0.0022 Score=54.77 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=49.5
Q ss_pred CCCccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 286 (773)
Q Consensus 212 ~~~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln 286 (773)
.|....||+=+.|+.....||.++|+.||.|. |+.+-|- -|||.|.+++.|..|+.++.
T Consensus 12 ~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEEECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34445565559999999999999999999777 7888765 49999999999999999763
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.58 E-value=0.0052 Score=52.50 Aligned_cols=56 Identities=16% Similarity=0.323 Sum_probs=48.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
....++| ++|+.....+|.++|+.||.|. |+.+-|- .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCC---------CEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3456677 9999999999999999999886 8888663 59999999999999998763
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.57 E-value=0.011 Score=50.34 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=59.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCC--CcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTK--DFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg--~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
++|-|++||+.+|++++.+.++....+.- ...+..+.+. ..-.-|||.|.+.+++..-.+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDY--------FEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEE--------EEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceE--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 68999999999999999999998876543 3443333211 123569999999999999999999999853
Q ss_pred ----eEEEEEeecc
Q psy2160 293 ----KKIKVERAKF 302 (773)
Q Consensus 293 ----~~I~V~~A~~ 302 (773)
.+-.|+.|-+
T Consensus 74 kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 74 KGQEYPAIVEFAPF 87 (91)
T ss_dssp TCCEEECEEEECSS
T ss_pred CCCEeeeEEEEcCC
Confidence 3345666654
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.38 E-value=0.018 Score=49.09 Aligned_cols=79 Identities=25% Similarity=0.341 Sum_probs=59.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCC-C-CCcceEEEEeCChHHHHHHHHHhCCceec--
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT-K-DFKGDALCTYIKKESVDLALSILDGYEIR-- 576 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~t-g-~~kG~afV~f~~~e~A~~Ai~~lng~~i~-- 576 (773)
+.|.|++||+.+|++++.+.++..+.+. .........+ + ..-.-|+|.|.+.+++..-.+.++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD--------YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE--------EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce--------EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 5799999999999999999999887654 3333333221 1 12356999999999999999999999986
Q ss_pred -Ce--EEEEEEccc
Q psy2160 577 -GK--KIKVERAKF 587 (773)
Q Consensus 577 -g~--~i~V~~a~~ 587 (773)
|. +-.|++|-+
T Consensus 74 kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 74 KGQEYPAIVEFAPF 87 (91)
T ss_dssp TCCEEECEEEECSS
T ss_pred CCCEeeeEEEEcCC
Confidence 32 335777764
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.0096 Score=53.16 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=55.2
Q ss_pred CcEEEEecCCCccccccchhhHHHHHHHHHHHHhcCCceeEEEecCCCCCcEEEEEecCHHHHHHHHHHhCCceeCC-eE
Q psy2160 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQ-RQ 712 (773)
Q Consensus 634 ~~~l~ikNl~~~~~~~~d~~~~~~l~edl~~~f~~fG~V~~v~i~~~~~~G~afV~F~~~e~A~~Ai~~lnGr~f~G-r~ 712 (773)
.+-|.|...+.. . ...|..+|++||.|.+.....+ .....|+|.++.+|.+|+.. ||+.|+| -.
T Consensus 24 ~~wVtVFGFp~~-~-----------~~~VL~~F~~~G~Iv~~~~~~~--~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~m 88 (119)
T 1wwh_A 24 DTWVTVFGFPQA-S-----------ASYILLQFAQYGNILKHVMSNT--GNWMHIRYQSKLQARKALSK-DGRIFGESIM 88 (119)
T ss_dssp GGEEEEECCCGG-G-----------HHHHHHHHHTTSCEEEEEECSS--SSEEEEEESSHHHHHHHHTT-TTCEETTTEE
T ss_pred CCEEEEECCCHH-H-----------HHHHHHHHHhhCcEEEeccCCC--CCeEEEEeCCHHHHHHHHHh-CCeEecCCEE
Confidence 467777776432 2 2789999999999998876433 37899999999999999997 9999985 66
Q ss_pred EEEEEe
Q psy2160 713 ITAETW 718 (773)
Q Consensus 713 l~v~~~ 718 (773)
|-|..+
T Consensus 89 IGV~p~ 94 (119)
T 1wwh_A 89 IGVKPC 94 (119)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 666553
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.017 Score=50.02 Aligned_cols=70 Identities=17% Similarity=0.247 Sum_probs=56.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhh----c-CcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCc
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQK----C-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGY 288 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~----~-G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~ 288 (773)
...+|.|.|||.++.++.|.-+|.. . |.|.. |... + +-|+|+|.+...|+..|+ ....
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~--------v~~~-----~---~~AvItF~d~~va~rVL~-k~~H 69 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLS--------WQRL-----G---CGGVLTFREPADAERVLA-QADH 69 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEE--------EEEE-----T---TEEEEEESSHHHHHHHHT-CSCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeE--------EEEc-----C---CcEEEEEcChHHHHHHhc-CCcc
Confidence 4689999999999999999999986 2 55554 4443 2 369999999999999987 4467
Q ss_pred eecCeEEEEEee
Q psy2160 289 EIRGKKIKVERA 300 (773)
Q Consensus 289 ~l~g~~I~V~~A 300 (773)
.|.|.+|.|...
T Consensus 70 ~L~~~~LsV~P~ 81 (104)
T 2dhx_A 70 ELHGAQLSLRPA 81 (104)
T ss_dssp BSSSSBCEEEEC
T ss_pred eecCeEEEEEcC
Confidence 789999999653
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.09 E-value=0.0054 Score=52.58 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=47.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcC
Q psy2160 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 286 (773)
Q Consensus 216 ~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~ln 286 (773)
..||+-+.|+.....||..+|+.||.|. |+.+-|- -|||.|.+++.|..|+.++.
T Consensus 6 ~HV~~l~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHVTFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEEeCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4555559999999999999999999776 7877664 49999999999999999765
No 392
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.04 E-value=0.01 Score=53.75 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCceeE-EEecC----------------C-CCCcEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEEecC
Q psy2160 660 QDLREECSKCGHVKK-VVLHD----------------K-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG 720 (773)
Q Consensus 660 edl~~~f~~fG~V~~-v~i~~----------------~-~~~G~afV~F~~~e~A~~Ai~~lnGr~f~Gr~l~v~~~dg 720 (773)
..|.++|++||.|.. +.+.+ . .....+.|+|.++.+|.+|++. ||+.|+|..|-|..|+.
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYTK 98 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECCH
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECCH
Confidence 789999999999875 32221 0 1247899999999999999997 99999999999988764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.97 E-value=0.0061 Score=52.24 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=47.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhC
Q psy2160 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILD 571 (773)
Q Consensus 501 ~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~ln 571 (773)
..++| ++|+.....+|..+|+.||.|. |+.+-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---------I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---------EEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---------EEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999885 8888663 59999999999999999775
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.90 E-value=0.04 Score=47.62 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=57.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh----c-CcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQK----C-GLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~----~-G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
....+|.|.|||+++.++.|.-+|+. - |.|. ++.... +-|+|+|.+.+.|++.+. -..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~--------~v~~~~--------~~AvItF~d~~va~rVL~-k~~ 68 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVL--------SWQRLG--------CGGVLTFREPADAERVLA-QAD 68 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEE--------EEEEET--------TEEEEEESSHHHHHHHHT-CSC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceee--------EEEEcC--------CcEEEEEcChHHHHHHhc-CCc
Confidence 45689999999999999999999997 2 4454 455432 469999999999999884 446
Q ss_pred ceecCeEEEEEEcc
Q psy2160 573 YEIRGKKIKVERAK 586 (773)
Q Consensus 573 ~~i~g~~i~V~~a~ 586 (773)
+.|.|..|.|....
T Consensus 69 H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 69 HELHGAQLSLRPAP 82 (104)
T ss_dssp CBSSSSBCEEEECC
T ss_pred ceecCeEEEEEcCC
Confidence 78889999998755
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.84 E-value=0.019 Score=51.31 Aligned_cols=71 Identities=21% Similarity=0.142 Sum_probs=57.2
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCCceecC-
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG- 292 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng~~l~g- 292 (773)
..+.|.|-|.|+.. ...|..+|++||.|.+ ... .. + ...-.|.|.+..+|.+||. .||..|.|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~--------~~~---~~-~--~NWihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILK--------HVM---SN-T--GNWMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEE--------EEE---CS-S--SSEEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEE--------ecc---CC-C--CCeEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 67899999999985 6788889999999997 443 11 2 2388999999999999998 89999975
Q ss_pred eEEEEEee
Q psy2160 293 KKIKVERA 300 (773)
Q Consensus 293 ~~I~V~~A 300 (773)
-.|-|.+.
T Consensus 87 ~mIGV~p~ 94 (119)
T 1wwh_A 87 IMIGVKPC 94 (119)
T ss_dssp EECEEEEC
T ss_pred EEEEEEEC
Confidence 66667553
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.80 E-value=0.04 Score=49.84 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEE--EE-e--cCCCC-CCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIK--LY-T--DPYTK-DFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 499 ~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~--l~-~--d~~tg-~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
..+.|.|-+.|++.+ ..+...|++||.|.++...-.+... +- . ..-.+ ...++..|+|.++.+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 467899999987655 5688899999999875322111110 00 0 00000 12568899999999999999 5999
Q ss_pred ceecCeEEEEEEcc
Q psy2160 573 YEIRGKKIKVERAK 586 (773)
Q Consensus 573 ~~i~g~~i~V~~a~ 586 (773)
..|.|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988898876
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.59 E-value=0.034 Score=47.70 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=54.5
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCC-CCC-cceEEEEEecChHHHHHHHHHcCCceec
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TKD-FKGDALCTYIKKESVDLALSILDGYEIR 291 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~-tg~-~kG~AfV~F~~~esA~~Al~~lng~~l~ 291 (773)
.+-+|-|+.||+.+|++++.+.++.+-.+.. ...+..+. .+. .-.-|||.|.+.+++..-.+.++|..|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--------~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--------FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEE--------CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccce--------EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4568999999999999998877765432211 11111111 011 1235899999999999999999999985
Q ss_pred C-----eEEEEEeecc
Q psy2160 292 G-----KKIKVERAKF 302 (773)
Q Consensus 292 g-----~~I~V~~A~~ 302 (773)
+ .+-.|+.|-+
T Consensus 80 D~kg~~~~a~VE~APy 95 (97)
T 2l08_A 80 DSKGLEYPAVVEFAPF 95 (97)
T ss_dssp CTTCCEEEEEEEECCC
T ss_pred eCCCCEeeeEEEecCC
Confidence 3 4556776654
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.34 E-value=0.11 Score=44.67 Aligned_cols=80 Identities=20% Similarity=0.240 Sum_probs=54.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCC-CC-CCcceEEEEeCChHHHHHHHHHhCCceecC
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPY-TK-DFKGDALCTYIKKESVDLALSILDGYEIRG 577 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~-tg-~~kG~afV~f~~~e~A~~Ai~~lng~~i~g 577 (773)
.-.|.|+.||+.+|++++.+.++..-.+. ......... .+ ..-.-|+|.|.+.+++..-.+.++|..|.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d--------~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHD--------YFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEE--------ECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccc--------eEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 45799999999999999887777543322 111111110 01 112468999999999999999999999863
Q ss_pred ---e--EEEEEEccc
Q psy2160 578 ---K--KIKVERAKF 587 (773)
Q Consensus 578 ---~--~i~V~~a~~ 587 (773)
. +-.|++|.+
T Consensus 81 ~kg~~~~a~VE~APy 95 (97)
T 2l08_A 81 SKGLEYPAVVEFAPF 95 (97)
T ss_dssp TTCCEEEEEEEECCC
T ss_pred CCCCEeeeEEEecCC
Confidence 2 556777764
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.24 E-value=0.057 Score=59.82 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=42.9
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHH
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~ 283 (773)
..++|||. .|..+++.+|.++|++||.|.. +.++.+. | -||+|+|.+.++|..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~--------~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINN--------HFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCC--------EEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcce--------EEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 34899998 7999999999999999999998 8888653 3 599999999999997765
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.91 E-value=0.067 Score=59.29 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=41.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHH
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 568 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~ 568 (773)
.++|+|. .|..+++.+|.++|++||.|. ++.++.+. ..||+|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~--------~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPIN--------NHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCC--------CEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcc--------eEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4799997 799999999999999999999 67777653 3799999999999997764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.80 E-value=7 Score=43.88 Aligned_cols=57 Identities=16% Similarity=0.290 Sum_probs=45.6
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHcCC
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 287 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~lng 287 (773)
....++|+ +|..+...+|.++|+.||.+. |+.+-+. .|||.|.+.++|..+++.++.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 34556665 999999999999999999665 6654332 599999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=67.28 E-value=8.1 Score=43.33 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=46.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCC
Q psy2160 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDG 572 (773)
Q Consensus 500 ~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng 572 (773)
...++|+ +|..+...+|.++|+.||.+. |+.+-+ ..|||.|.+.+.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---------V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---------ISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---------EEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---------EEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 3567776 999999999999999999875 665533 4699999999999999998853
No 403
>3msw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Bacteroides fragilis}
Probab=35.28 E-value=32 Score=31.34 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=11.4
Q ss_pred EEEEeCcCCceecc
Q psy2160 126 VYIWDKEKNAWFPK 139 (773)
Q Consensus 126 ~~~~d~~~~~w~p~ 139 (773)
.|+||.....|.-.
T Consensus 116 sYkwn~k~n~w~l~ 129 (145)
T 3msw_A 116 AYKMNSRTNQWILE 129 (145)
T ss_dssp EEEEETTTTEEEEE
T ss_pred eecccCcCCCeEEe
Confidence 49999999999754
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=33.63 E-value=68 Score=25.34 Aligned_cols=73 Identities=21% Similarity=0.331 Sum_probs=44.2
Q ss_pred EEEEcCC-CCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHhCCceecCeEE
Q psy2160 502 KVYVSNL-PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKI 580 (773)
Q Consensus 502 ~l~V~nL-p~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~lng~~i~g~~i 580 (773)
++||..= -..++..+|..++..-+.|... +. =.|.+. ..|.||.-. ...|..++..|++..+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~-~I--G~I~i~--------d~~s~v~v~-~~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSAD-DI--GIITIM--------DNASYVEIL-NGKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGG-GE--EEEEEC--------SSCEEEEEC-TTCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChh-hc--cEEEEe--------CCcEEEEEC-HHHHHHHHHHhccccCcCceE
Confidence 4555321 3347778888888877666532 11 134443 347888884 456888899999999999999
Q ss_pred EEEEcc
Q psy2160 581 KVERAK 586 (773)
Q Consensus 581 ~V~~a~ 586 (773)
.|+.++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 998765
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.00 E-value=65 Score=30.31 Aligned_cols=56 Identities=14% Similarity=0.116 Sum_probs=40.6
Q ss_pred EEEEcCCCC---------CCCHHHHHHHH--hhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHH-HHHHH
Q psy2160 217 KVYVSNLPL---------DLTQEEFVEVM--QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV-DLALS 283 (773)
Q Consensus 217 ~VyV~nLP~---------~~te~el~~~F--s~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA-~~Al~ 283 (773)
.+.|-|+|. ..+..+|.+.| +.|.++. |+...++. | ..|+|.|.|.+.-+- ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~~-G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNYL-G-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECSS-B-EEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccCC-C-CceeEEEEecCChHHHHHHHH
Confidence 455667776 14568999977 9999988 67766665 5 689999999987654 34554
No 406
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=27.07 E-value=2.1e+02 Score=23.55 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=44.7
Q ss_pred CccEEEEcCCCCCCCHHHHHHHHhhcCcccccccCCceeEEEEecCCCCCcceEEEEEecChHHHHHHHHHc
Q psy2160 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285 (773)
Q Consensus 214 ~~~~VyV~nLP~~~te~el~~~Fs~~G~I~~~~~~~~p~i~l~~d~~tg~~kG~AfV~F~~~esA~~Al~~l 285 (773)
.+|-|-|-|+|..+-..++.-.....|.--. + =|. .|.|.+.|.+.+.-.+||+.|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefy--------c-dyi-------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFY--------C-DYI-------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEE--------E-EEC-------SSCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEe--------e-eee-------cCeeEEEecCChHHHHHHHHH
Confidence 7899999999999999998877777775432 1 122 356999999999999999865
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.01 E-value=91 Score=29.33 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=39.5
Q ss_pred CEEEEcCCCCC---------CCHHHHHHHH--HhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHH
Q psy2160 501 TKVYVSNLPLD---------LTQEEFVEVM--QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563 (773)
Q Consensus 501 ~~l~V~nLp~~---------~t~e~L~~~F--~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A 563 (773)
-.+.|-|+|.. ....+|++.| +.|.++. |+...++. | ++|+|+|.|.+--+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k---------v~~l~~~~-G-h~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR---------VRPLWNYL-G-HSGTAIVEFNKDWNG 75 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE---------EEEEECSS-B-EEEEEEEECCSSHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce---------eEecccCC-C-CceeEEEEecCChHH
Confidence 46778888861 3457899977 9999996 77777765 3 789999999875543
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=24.44 E-value=3e+02 Score=22.67 Aligned_cols=57 Identities=19% Similarity=0.330 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCcceeccCCCceEEEEEecCCCCCCcceEEEEeCChHHHHHHHHHh
Q psy2160 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 570 (773)
Q Consensus 498 ~~~~~l~V~nLp~~~t~e~L~~~F~~~G~I~~~~~~~~~~i~l~~d~~tg~~kG~afV~f~~~e~A~~Ai~~l 570 (773)
..++-|-|-|+|..+-..++.-.....|--- -|..+ .|-|.|.|.+.++...||+.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyef--------ycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEF--------YCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCE--------EEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeE--------eeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 4578899999999999988887777777543 13222 467999999999999999876
No 409
>3msw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Bacteroides fragilis}
Probab=21.32 E-value=53 Score=29.90 Aligned_cols=38 Identities=29% Similarity=0.746 Sum_probs=23.7
Q ss_pred EEEecccCceeecccccccCCCcceec-CCCC-----ceeeecCccCccccC
Q psy2160 24 YTWDNEKNEWKLRQIDYEFDGSNYFYK-DKTG-----TKYKWDTASNSWVPS 69 (773)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~w~~~~~~w~~~ 69 (773)
++||+.++...+.. .+ .|. +..+ -+|.|++..+.|.-.
T Consensus 86 a~WNkkk~ay~~~~-k~-------vy~~~~~n~~~ay~sYkwn~k~n~w~l~ 129 (145)
T 3msw_A 86 SVWNKEKGSFDLSK-KY-------IYITDNNNQLIAQYAYKMNSRTNQWILE 129 (145)
T ss_dssp EEEETTTTEEEEEE-EE-------EEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred hhhccccccccccc-eE-------EEEEcCCCCeeeeeeecccCcCCCeEEe
Confidence 68888888888642 21 222 2222 268888888888644
Done!