Your job contains 1 sequence.
>psy2160
DRSKYVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWD
TASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTD
STDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSV
DATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCG
LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA
KFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDP
ALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNG
RWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPK
LKPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKL
YTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKP
KKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQ
DLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDG
KTRYKIQETAEEREARLKKWETFLEEEDKKKKEAGKGSIDEKESKELQAPLTK
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2160
(773 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0037081 - symbol:barc "barricade" species:7227 "Dr... 1037 9.5e-105 1
ZFIN|ZDB-GENE-040426-1578 - symbol:htatsf1 "HIV TAT speci... 815 1.9e-85 2
MGI|MGI:1919709 - symbol:Htatsf1 "HIV TAT specific factor... 771 7.4e-84 3
RGD|1563377 - symbol:Htatsf1 "HIV-1 Tat specific factor 1... 762 6.6e-83 3
UNIPROTKB|G3N370 - symbol:HTATSF1 "Uncharacterized protei... 737 1.0e-80 3
UNIPROTKB|F1P1G7 - symbol:HTATSF1 "Uncharacterized protei... 807 2.2e-80 1
UNIPROTKB|I3LC46 - symbol:HTATSF1 "Uncharacterized protei... 764 2.0e-79 2
UNIPROTKB|E2R8T8 - symbol:HTATSF1 "Uncharacterized protei... 757 1.4e-78 2
UNIPROTKB|J9NZQ1 - symbol:HTATSF1 "Uncharacterized protei... 757 1.4e-78 2
UNIPROTKB|O43719 - symbol:HTATSF1 "HIV Tat-specific facto... 751 1.4e-76 2
WB|WBGene00022025 - symbol:Y65B4A.1 species:6239 "Caenorh... 637 2.9e-66 2
ASPGD|ASPL0000056254 - symbol:AN1188 species:162425 "Emer... 389 3.9e-40 2
TAIR|locus:2181452 - symbol:ELF9 "EARLY FLOWERING 9" spec... 318 4.3e-39 3
UNIPROTKB|Q5H918 - symbol:HTATSF1 "HIV Tat-specific facto... 400 1.3e-36 1
UNIPROTKB|Q5H919 - symbol:HTATSF1 "HIV Tat-specific facto... 396 3.6e-36 1
POMBASE|SPBC1289.02c - symbol:uap2 "U2 snRNP-associated p... 366 6.8e-33 1
UNIPROTKB|G4MSB8 - symbol:MGG_04442 "Splicing factor U2AF... 196 1.9e-30 3
DICTYBASE|DDB_G0289547 - symbol:DDB_G0289547 "RNA-binding... 283 2.8e-27 2
SGD|S000005230 - symbol:CUS2 "Protein that binds to U2 sn... 208 2.4e-15 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 104 8.7e-11 3
TAIR|locus:2178198 - symbol:AT5G09880 species:3702 "Arabi... 139 8.9e-11 3
CGD|CAL0001495 - symbol:orf19.5767 species:5476 "Candida ... 152 1.4e-10 2
UNIPROTKB|Q5A8Q7 - symbol:CUS2 "Potential spliceosome fac... 152 1.4e-10 2
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 125 1.3e-09 3
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 126 9.9e-09 3
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 126 9.9e-09 3
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 120 3.2e-08 3
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 120 3.4e-08 3
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 120 3.4e-08 3
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 119 4.8e-08 3
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 119 5.4e-08 3
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 119 5.4e-08 3
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 113 1.6e-07 3
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 102 2.2e-07 4
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 105 6.8e-07 4
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 102 9.6e-07 3
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 94 1.3e-06 4
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 94 1.3e-06 4
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 94 1.4e-06 4
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 93 1.4e-06 4
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 93 1.7e-06 4
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 96 6.1e-06 3
WB|WBGene00006697 - symbol:uaf-1 species:6239 "Caenorhabd... 87 9.2e-06 3
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 103 1.0e-05 3
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 93 1.2e-05 3
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 111 1.5e-05 3
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 94 2.2e-05 3
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 83 2.5e-05 4
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 98 3.4e-05 3
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 98 3.4e-05 3
WB|WBGene00004389 - symbol:rnp-6 species:6239 "Caenorhabd... 123 4.6e-05 4
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 83 5.2e-05 4
UNIPROTKB|H7BY36 - symbol:EWSR1 "RNA-binding protein EWS"... 127 5.3e-05 1
RGD|1307258 - symbol:Ewsr1 "Ewing sarcoma breakpoint regi... 127 5.7e-05 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 82 6.7e-05 4
FB|FBgn0032620 - symbol:CG12288 species:7227 "Drosophila ... 97 7.0e-05 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 82 8.2e-05 4
UNIPROTKB|C9JGE3 - symbol:EWSR1 "Ewing sarcoma breakpoint... 128 0.00013 1
UNIPROTKB|F1RFI8 - symbol:EWSR1 "Uncharacterized protein"... 128 0.00013 1
UNIPROTKB|J9P7G2 - symbol:EWSR1 "Uncharacterized protein"... 128 0.00015 1
UNIPROTKB|E2RA07 - symbol:EWSR1 "Uncharacterized protein"... 128 0.00015 1
UNIPROTKB|D4A458 - symbol:Ewsr1 "Protein Ewsr1" species:1... 127 0.00018 1
UNIPROTKB|E2RA46 - symbol:EWSR1 "Uncharacterized protein"... 127 0.00018 1
MGI|MGI:99960 - symbol:Ewsr1 "Ewing sarcoma breakpoint re... 127 0.00019 1
UNIPROTKB|Q01844 - symbol:EWSR1 "RNA-binding protein EWS"... 127 0.00019 1
UNIPROTKB|F1LN98 - symbol:Ewsr1 "Protein Ewsr1" species:1... 127 0.00019 1
UNIPROTKB|F1MA60 - symbol:Ewsr1 "Protein Ewsr1" species:1... 127 0.00019 1
FB|FBgn0005411 - symbol:U2af50 "U2 small nuclear riboprot... 75 0.00022 3
UNIPROTKB|F1NCS2 - symbol:EWSR1 "Uncharacterized protein"... 133 0.00022 2
UNIPROTKB|B0QYK0 - symbol:EWSR1 "RNA-binding protein EWS"... 126 0.00023 1
UNIPROTKB|F1NDA5 - symbol:EWSR1 "Uncharacterized protein"... 133 0.00025 2
ZFIN|ZDB-GENE-061215-102 - symbol:zgc:158363 "zgc:158363"... 123 0.00028 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 97 0.00029 2
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 87 0.00031 2
ZFIN|ZDB-GENE-030131-2317 - symbol:ewsr1a "Ewing sarcoma ... 130 0.00032 2
UNIPROTKB|J9P1K6 - symbol:J9P1K6 "Uncharacterized protein... 129 0.00034 2
FB|FBgn0037939 - symbol:CG14718 species:7227 "Drosophila ... 121 0.00049 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 93 0.00059 2
DICTYBASE|DDB_G0286395 - symbol:u2af2 "U2 snRNP auxiliary... 93 0.00065 4
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 82 0.00068 3
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 86 0.00072 2
UNIPROTKB|A8E651 - symbol:EWSR1 "Uncharacterized protein"... 131 0.00073 2
RGD|1310071 - symbol:Rbm39 "RNA binding motif protein 39"... 97 0.00075 2
UNIPROTKB|E2R4L0 - symbol:RBM39 "Uncharacterized protein"... 97 0.00077 2
UNIPROTKB|Q14498 - symbol:RBM39 "RNA-binding protein 39" ... 97 0.00077 2
MGI|MGI:2157953 - symbol:Rbm39 "RNA binding motif protein... 97 0.00077 2
UNIPROTKB|F1MA64 - symbol:Rbm39 "Protein Rbm39" species:1... 97 0.00077 2
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 89 0.00085 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 85 0.00096 4
>FB|FBgn0037081 [details] [associations]
symbol:barc "barricade" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:AE014296
GO:GO:0030182 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:NOG317500 GeneTree:ENSGT00390000009902 KO:K13093
EMBL:AY061345 RefSeq:NP_649313.1 RefSeq:NP_730628.1
RefSeq:NP_730629.1 UniGene:Dm.1035 SMR:Q7K204 IntAct:Q7K204
STRING:Q7K204 EnsemblMetazoa:FBtr0078399 EnsemblMetazoa:FBtr0078400
GeneID:40369 KEGG:dme:Dmel_CG6049 UCSC:CG6049-RA
FlyBase:FBgn0037081 InParanoid:Q7K204 OMA:MARYQMN OrthoDB:EOG4TB2SG
GenomeRNAi:40369 NextBio:818414 Uniprot:Q7K204
Length = 556
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 215/486 (44%), Positives = 298/486 (61%)
Query: 4 KYVHYEGDV-AVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDG-SNYFYKDKTGTKYKWDT 61
+++ Y D A+YTDP ++Q+Y W N W+ +D + DG + Y+++ YKW
Sbjct: 74 EHMTYGADGGAIYTDPSTKQKYKWCATGNNWQPLGVDEDVDGQAEDPYENE---HYKWCP 130
Query: 62 ASNSWVPSVPLVTXXXXXXXXXXXXXXXXXXQKTAPPIQRQDMSKGSYGY-EGDTHTYTD 120
S W+P QK P +G G E TYTD
Sbjct: 131 KSQQWLPK---------KQETETEHYKWDDEQKKWVPKHPNPGQEGVCGVDEHGERTYTD 181
Query: 121 STDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSV 180
DG + WD K+AWFPK+DDDF+ARYQM+YGFI+ + +++K + ++K +E+ +
Sbjct: 182 K-DGVEFFWDATKSAWFPKIDDDFMARYQMNYGFIDNTSAGEKEKAEKEAAEAKRKEEEL 240
Query: 181 -----DATAPM--ENPKAEEKVVPGQKRKPEPPKWFDIGE-ESTKVYVSNLPLDLTQEEF 232
+A A M +NP + V G+++ EPPKWF++ ++TKVYVSNLPLD+T +EF
Sbjct: 241 KRMTAEAEAAMSRDNPASSAAVPTGKRKAQEPPKWFEMDPLQNTKVYVSNLPLDITMDEF 300
Query: 233 VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 292
++M KCG+VM+D T + K+KLY + KGD LC YIK ESV+LAL ILD Y +RG
Sbjct: 301 ADLMGKCGMVMRDPQTQKFKLKLYAEK-DGQIKGDGLCDYIKVESVNLALKILDEYNLRG 359
Query: 293 KKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRGERSKNESVI 352
KI+V+RA+F M+GE Y+P FDWRPDK+RGERSKNE +
Sbjct: 360 HKIRVQRAQFQMRGE-YNPALKPKRKKKDKEKLQKMKEKL-FDWRPDKLRGERSKNEKTV 417
Query: 353 IVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAAD 412
I+KNLF P LF+K+V LILEYQ +LREECSKCG V+KVV++D+HP+GVAQI PE AD
Sbjct: 418 IIKNLFTPELFEKEVELILEYQNNLREECSKCGMVRKVVIYDRHPDGVAQINMASPEEAD 477
Query: 413 ACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTM 472
+++ GR+FGQRQ++AE WDGKT+YKI+E+A E RL KW+ FL ++ ++A M
Sbjct: 478 LVIQMMQGRYFGQRQLSAEAWDGKTKYKIEESAVEAHERLSKWDEFLAEEETDKKASEDM 537
Query: 473 KGEAYD 478
K E D
Sbjct: 538 KEEDVD 543
Score = 742 (266.3 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 146/272 (53%), Positives = 188/272 (69%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+NTKVYVSNLPLD+T +EF ++M KCG+VM+D T + K+KLY + KGD LC YI
Sbjct: 282 QNTKVYVSNLPLDITMDEFADLMGKCGMVMRDPQTQKFKLKLYAEK-DGQIKGDGLCDYI 340
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXX 618
K ESV+LAL ILD Y +RG KI+V+RA+F M+GE Y+P
Sbjct: 341 KVESVNLALKILDEYNLRGHKIRVQRAQFQMRGE-YNPALKPKRKKKDKEKLQKMKEKL- 398
Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
FDWRPDK+RGERSKNE +I+KNLF P LF+K+V LILEYQ +LREECSKCG V+KVV++
Sbjct: 399 FDWRPDKLRGERSKNEKTVIIKNLFTPELFEKEVELILEYQNNLREECSKCGMVRKVVIY 458
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVAQI PE AD +++ GR+FGQRQ++AE WDGKT+YKI+E+A E RL
Sbjct: 459 DRHPDGVAQINMASPEEADLVIQMMQGRYFGQRQLSAEAWDGKTKYKIEESAVEAHERLS 518
Query: 739 KWETFLXXXXXXXXXAGKGSIDEKESKELQAP 770
KW+ FL K S D KE +++ +P
Sbjct: 519 KWDEFLAEEETDK----KASEDMKE-EDVDSP 545
Score = 37 (18.1 bits), Expect = 2.0e-75, Sum P(2) = 2.0e-75
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 163 EKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQ-KRKPEPPKWFDIGEES 215
EK A+ + K + + +A AP+ NP + +V + KP+ D +E+
Sbjct: 13 EKSEEAE--EKKGDAEGQEAKAPILNPISVPEVDDKPTENKPQSDNHADKTDET 64
>ZFIN|ZDB-GENE-040426-1578 [details] [associations]
symbol:htatsf1 "HIV TAT specific factor 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1578 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG317500 KO:K13093
CTD:27336 HOVERGEN:HBG059454 OrthoDB:EOG4BRWKT EMBL:BC055565
IPI:IPI00510206 RefSeq:NP_957497.1 UniGene:Dr.77530
ProteinModelPortal:Q7SXJ9 SMR:Q7SXJ9 STRING:Q7SXJ9 PRIDE:Q7SXJ9
GeneID:394178 KEGG:dre:394178 HOGENOM:HOG000067967
InParanoid:Q7SXJ9 NextBio:20815121 ArrayExpress:Q7SXJ9 Bgee:Q7SXJ9
Uniprot:Q7SXJ9
Length = 450
Score = 815 (292.0 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 167/355 (47%), Positives = 226/355 (63%)
Query: 114 DTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKP--SADLV 171
D +TYTD DGTVY WD EK AWFPK++DDF+A YQ +YGF E+ D SA+ +
Sbjct: 30 DPYTYTDPEDGTVYDWDHEKRAWFPKINDDFIAAYQANYGFNEE-GAPDPSAAVNSAESL 88
Query: 172 QSKVEE--KSVDATAPME---NPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPL 225
+K EE K + T P E K +E G+KRK +P WF++ +E +T V+V+ LP
Sbjct: 89 PAKSEEPKKPEEPTKPAEASDQGKNKEGEKKGEKRKADPT-WFEVEKEKNTNVHVTGLPP 147
Query: 226 DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285
D+T +EFV VM KCG+VM+D T + KI++Y D KGD LC Y+KKESV LA +L
Sbjct: 148 DITPDEFVGVMSKCGIVMRDPITEEYKIRIYKDKDGNQ-KGDGLCCYLKKESVALAKQLL 206
Query: 286 DGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRGER 345
D EIRG ++ VE A+F +KG+ +D DWRP+K R
Sbjct: 207 DETEIRGYRLHVEEARFELKGQ-FD--ASKKKKKNKEYRKKLQQQQKQLDWRPEKSGEVR 263
Query: 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 405
++E VII++N+F P F++D ++ EY+ DLR EC K G VKKV++ D+HP+GVA + F
Sbjct: 264 KRHEKVIIIQNMFHPTDFEEDPLVLNEYRDDLRTECEKFGQVKKVIIFDRHPDGVASVAF 323
Query: 406 KEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLG 460
KEPE ADAC+ LNGRWFG R+++A WDG T Y+++ET+ ERE RLK W +FLG
Sbjct: 324 KEPEEADACQVALNGRWFGGRKLSALLWDGVTDYQVEETSREREERLKGWLSFLG 378
Score = 610 (219.8 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 122/272 (44%), Positives = 169/272 (62%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
++NT V+V+ LP D+T +EFV VM KCG+VM+D T + KI++Y D KGD LC Y
Sbjct: 135 EKNTNVHVTGLPPDITPDEFVGVMSKCGIVMRDPITEEYKIRIYKDKDGNQ-KGDGLCCY 193
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXX 617
+KKESV LA +LD EIRG ++ VE A+F +KG+ +D
Sbjct: 194 LKKESVALAKQLLDETEIRGYRLHVEEARFELKGQ-FD--ASKKKKKNKEYRKKLQQQQK 250
Query: 618 XFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 677
DWRP+K R ++E VII++N+F P F++D ++ EY+ DLR EC K G VKKV++
Sbjct: 251 QLDWRPEKSGEVRKRHEKVIIIQNMFHPTDFEEDPLVLNEYRDDLRTECEKFGQVKKVII 310
Query: 678 HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
D+HP+GVA + FKEPE ADAC+ LNGRWFG R+++A WDG T Y+++ET+ ERE RL
Sbjct: 311 FDRHPDGVASVAFKEPEEADACQVALNGRWFGGRKLSALLWDGVTDYQVEETSREREERL 370
Query: 738 KKWETFLXXXXXXXXX-AGKGSIDEKESKELQ 768
K W +FL A DE+++ Q
Sbjct: 371 KGWLSFLGDEKGSGEAKANSTKTDEQQNSSPQ 402
Score = 69 (29.3 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 11 DVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGS---NYFYKDK 52
D YTDP+ Y WD+EK W +I+ +F + NY + ++
Sbjct: 30 DPYTYTDPEDGTVYDWDHEKRAW-FPKINDDFIAAYQANYGFNEE 73
Score = 59 (25.8 bits), Expect = 1.9e-85, Sum P(2) = 1.9e-85
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 34 KLRQIDYEFDGSN----YFYKD-KTGTKYKWDTASNSWVPSV 70
+L+Q+ YE N Y Y D + GT Y WD +W P +
Sbjct: 16 RLQQL-YEQRQENSDDPYTYTDPEDGTVYDWDHEKRAWFPKI 56
>MGI|MGI:1919709 [details] [associations]
symbol:Htatsf1 "HIV TAT specific factor 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919709 GO:GO:0005634 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG317500
GeneTree:ENSGT00390000009902 KO:K13093 EMBL:AL672263 CTD:27336
HOGENOM:HOG000049201 HOVERGEN:HBG059454 OrthoDB:EOG4BRWKT
EMBL:AK005527 EMBL:AK011234 EMBL:AK049495 EMBL:BC037711
EMBL:BC114588 EMBL:BC114589 IPI:IPI00221566 IPI:IPI00775823
RefSeq:NP_082518.1 RefSeq:NP_083647.1 UniGene:Mm.2152
ProteinModelPortal:Q8BGC0 SMR:Q8BGC0 DIP:DIP-46367N STRING:Q8BGC0
PhosphoSite:Q8BGC0 PaxDb:Q8BGC0 PRIDE:Q8BGC0
Ensembl:ENSMUST00000088652 Ensembl:ENSMUST00000114751 GeneID:72459
KEGG:mmu:72459 UCSC:uc009tgv.2 InParanoid:Q8BGC0 NextBio:336274
Bgee:Q8BGC0 CleanEx:MM_HTATSF1 Genevestigator:Q8BGC0
GermOnline:ENSMUSG00000067873 Uniprot:Q8BGC0
Length = 757
Score = 771 (276.5 bits), Expect = 7.4e-84, Sum P(3) = 7.4e-84
Identities = 156/349 (44%), Positives = 216/349 (61%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+ H+ D T Y WD +K AWFPK+ +DF+A YQ +YGF + D S VQ
Sbjct: 37 GEAHSLGQPPDDTPYEWDLDKKAWFPKITEDFIATYQANYGF-----SSDGASSSTANVQ 91
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
K+V+ E P+ + G+KRK E WF + E+ +T VYVS LP D+T +E
Sbjct: 92 D-ANTKAVEEPPQKEVPETPDSKRKGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 149
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+KKESV+LAL +LD EIR
Sbjct: 150 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 208
Query: 292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
G K+ VE AKF +KGE YD DWRP++ G R ++E
Sbjct: 209 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHER 265
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE
Sbjct: 266 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 325
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE FL
Sbjct: 326 ADHCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 374
Score = 621 (223.7 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 120/246 (48%), Positives = 164/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 133 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLK 191
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
KESV+LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 192 KESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQL 248
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 249 DWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 308
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F+EPE AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+
Sbjct: 309 DRHPDGVASVSFREPEEADHCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLR 368
Query: 739 KWETFL 744
WE FL
Sbjct: 369 GWEAFL 374
Score = 54 (24.1 bits), Expect = 7.4e-84, Sum P(3) = 7.4e-84
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 692 EPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
E E + C + N +R + E +G + + QE EREAR K
Sbjct: 461 EREGGEGCSKKENEEGCPERALEPE--EGNPQTEAQENGPEREARKK 505
Score = 47 (21.6 bits), Expect = 7.4e-84, Sum P(3) = 7.4e-84
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 55 TKYKWDTASNSWVPSV 70
T Y+WD +W P +
Sbjct: 49 TPYEWDLDKKAWFPKI 64
Score = 40 (19.1 bits), Expect = 4.0e-83, Sum P(3) = 4.0e-83
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 10 GDVAVYTDPQSRQQYTWDNEKNEW 33
G+ P Y WD +K W
Sbjct: 37 GEAHSLGQPPDDTPYEWDLDKKAW 60
>RGD|1563377 [details] [associations]
symbol:Htatsf1 "HIV-1 Tat specific factor 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1563377 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
OrthoDB:EOG4BRWKT IPI:IPI00949770 Ensembl:ENSRNOT00000065636
ArrayExpress:D4A997 Uniprot:D4A997
Length = 776
Score = 762 (273.3 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
Identities = 155/349 (44%), Positives = 216/349 (61%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+T + D T Y WD +K AWFPK+ +DF+A YQ +YGF + D S VQ
Sbjct: 36 GETDSLGQPPDDTPYEWDLDKKAWFPKITEDFIASYQANYGF-----SGDGAPSSTGNVQ 90
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
K+V+ E P+ + G+KRK E WF + E+ +T VYVS LP D+T +E
Sbjct: 91 D-ANTKTVEEPPQKEIPETTDSKKRGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 148
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+KKESV+LAL +LD EIR
Sbjct: 149 FIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLKKESVELALKLLDEDEIR 207
Query: 292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
G K+ VE A+F +KGE YD DWRP++ G R ++E
Sbjct: 208 GYKLHVEVAQFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPNRLRHER 264
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE
Sbjct: 265 VVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 324
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE FL
Sbjct: 325 ADNCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAFL 373
Score = 617 (222.3 bits), Expect = 2.6e-63, Sum P(2) = 2.6e-63
Identities = 119/246 (48%), Positives = 164/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDDQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
KESV+LAL +LD EIRG K+ VE A+F +KGE YD
Sbjct: 191 KESVELALKLLDEDEIRGYKLHVEVAQFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPNRLRHERVVILKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F+EPE AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+
Sbjct: 308 DRHPDGVASVSFREPEEADNCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 54 (24.1 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 694 EAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETF 743
E+ + C + +G +R++ E G + + QE ERE++ K E +
Sbjct: 481 ESGEGCSKRESGEGCPERELELEX--GNPKKESQENGPERESKKKXKEXY 528
Score = 47 (21.6 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 55 TKYKWDTASNSWVPSV 70
T Y+WD +W P +
Sbjct: 48 TPYEWDLDKKAWFPKI 63
Score = 40 (19.1 bits), Expect = 3.6e-82, Sum P(3) = 3.6e-82
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 10 GDVAVYTDPQSRQQYTWDNEKNEW 33
G+ P Y WD +K W
Sbjct: 36 GETDSLGQPPDDTPYEWDLDKKAW 59
>UNIPROTKB|G3N370 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
OMA:MQELYGD EMBL:DAAA02033795 Ensembl:ENSBTAT00000025363
Uniprot:G3N370
Length = 756
Score = 737 (264.5 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 156/357 (43%), Positives = 212/357 (59%)
Query: 110 GYEGDTHTYTDS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEK 164
G E D TDS TD T Y WD +K AWFPK+ +DF+A YQ +YGF D
Sbjct: 29 GTEKDPGAETDSFRQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN-----DGA 82
Query: 165 KPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNL 223
S VQ V ++ + + P + G+KRK E WF + ++ +T VYVS L
Sbjct: 83 SNSTASVQD-VSARTAEEPPQRQPPDPSDLKKKGEKRKTESG-WFHVEDDRNTNVYVSGL 140
Query: 224 PLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALS 283
P D+T +EF+++M K G++M+D T K+KLY D + KGD LC Y+K+ESVDLAL
Sbjct: 141 PPDITVDEFIQLMSKFGIIMRDPQTGDFKVKLYKDDQG-NLKGDGLCCYLKRESVDLALK 199
Query: 284 ILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG 343
+LD EIRG ++ VE AKF +KGE YD DWRP++ G
Sbjct: 200 LLDEGEIRGYRLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPERQAG 256
Query: 344 E-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 402
R +E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA
Sbjct: 257 SSRMYHERVVIIKNMFHPVDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVAS 316
Query: 403 IFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
+ F+ PE AD C + LNGRWFG RQITA+ WDG T +++ET ERE RL+ WE FL
Sbjct: 317 VSFRSPEEADYCIQTLNGRWFGGRQITAQAWDGTTDCQVEETTSEREERLRGWEAFL 373
Score = 608 (219.1 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 118/246 (47%), Positives = 159/246 (64%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTGDFKVKLYKDDQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESVDLAL +LD EIRG ++ VE AKF +KGE YD
Sbjct: 191 RESVDLALKLLDEGEIRGYRLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQL 247
Query: 620 DWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R +E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERQAGSSRMYHERVVIIKNMFHPVDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F+ PE AD C + LNGRWFG RQITA+ WDG T +++ET ERE RL+
Sbjct: 308 DRHPDGVASVSFRSPEEADYCIQTLNGRWFGGRQITAQAWDGTTDCQVEETTSEREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 60 (26.2 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 17/60 (28%), Positives = 25/60 (41%)
Query: 11 DVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSV 70
DV D Q R Q + + K+ + E D F + T T Y+WD +W P +
Sbjct: 7 DVNDKFDEQLRVQEWYRDTKDNGTEKDPGAETDS---FRQQPTDTPYEWDLDKKAWFPKI 63
Score = 45 (20.9 bits), Expect = 1.0e-80, Sum P(3) = 1.0e-80
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 692 EPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWET 742
E E+ AC + R G+ E +G + +ET E+E++ KK +T
Sbjct: 471 ERESKAACPKK---RESGEGSPEKEHEEGNPNKESKETVPEKESKKKKLKT 518
>UNIPROTKB|F1P1G7 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 KO:K13093 CTD:27336 OMA:AAYQANY
EMBL:AADN02013314 IPI:IPI00582585 RefSeq:XP_001233032.1
UniGene:Gga.15900 ProteinModelPortal:F1P1G7
Ensembl:ENSGALT00000010348 GeneID:422245 KEGG:gga:422245
NextBio:20824907 Uniprot:F1P1G7
Length = 450
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 166/366 (45%), Positives = 224/366 (61%)
Query: 100 QRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPN 159
Q+ + +G G + D TY D DG Y WD+EK AWFPK+ +DFLA Y +YGF +
Sbjct: 18 QQYEADRGGEG-DADPFTYVDPADGAAYEWDREKKAWFPKITEDFLATYHANYGF--NAD 74
Query: 160 TVDEKKPSADLVQSKVEEKS-VDATAPMENPKAEEKVVPGQK---RKPEPPKWFDIGEE- 214
D S ++K+ S T P N K ++ P QK RK EP WF + E+
Sbjct: 75 ETDSSSASGTASENKLPLSSKTSETQPSANEKGPKQTEPKQKTEKRKLEPG-WFHVEEDR 133
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+T VYV+ LP D+T++EFV+VM K G++M+D T + KIKLY D + KGD LC Y+K
Sbjct: 134 NTNVYVTGLPPDITKDEFVQVMSKGGIIMRDPQTEEHKIKLYKDK-EGNLKGDGLCCYLK 192
Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 334
+ESV LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 193 RESVQLALRLLDEAEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSQQQKQL 249
Query: 335 DWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 393
DWRP+K G R ++E ++I++N+F P F++D ++ E ++DLR EC K G VKKV++
Sbjct: 250 DWRPEKKDGAARMRHERIVIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLIF 309
Query: 394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 453
D+HP+GVA + FKE AD C+ LNGRWFG RQ++AETWDG T Y+++ETA ERE RLK
Sbjct: 310 DRHPDGVASVSFKEATEADLCKLTLNGRWFGGRQLSAETWDGVTDYQVEETAREREERLK 369
Query: 454 KWETFL 459
W +FL
Sbjct: 370 VWGSFL 375
Score = 618 (222.6 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 122/246 (49%), Positives = 163/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYV+ LP D+T++EFV+VM K G++M+D T + KIKLY D + KGD LC Y+K
Sbjct: 134 NTNVYVTGLPPDITKDEFVQVMSKGGIIMRDPQTEEHKIKLYKDK-EGNLKGDGLCCYLK 192
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESV LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 193 RESVQLALRLLDEAEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSQQQKQL 249
Query: 620 DWRPDKMRGE-RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP+K G R ++E ++I++N+F P F++D ++ E ++DLR EC K G VKKV++
Sbjct: 250 DWRPEKKDGAARMRHERIVIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLIF 309
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + FKE AD C+ LNGRWFG RQ++AETWDG T Y+++ETA ERE RLK
Sbjct: 310 DRHPDGVASVSFKEATEADLCKLTLNGRWFGGRQLSAETWDGVTDYQVEETAREREERLK 369
Query: 739 KWETFL 744
W +FL
Sbjct: 370 VWGSFL 375
Score = 76 (31.8 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 9 EGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGS---NY-FYKDKTGTKYKWDTASN 64
+ D Y DP Y WD EK W +I +F + NY F D+T + TAS
Sbjct: 29 DADPFTYVDPADGAAYEWDREKKAW-FPKITEDFLATYHANYGFNADETDSSSASGTASE 87
Query: 65 SWVP 68
+ +P
Sbjct: 88 NKLP 91
Score = 57 (25.1 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 41 EFDGSNYFYKDKT-GTKYKWDTASNSWVPSV 70
E D + Y D G Y+WD +W P +
Sbjct: 27 EGDADPFTYVDPADGAAYEWDREKKAWFPKI 57
>UNIPROTKB|I3LC46 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000009902
KO:K13093 OMA:MQELYGD EMBL:FP340295 RefSeq:XP_003360505.1
Ensembl:ENSSSCT00000022638 GeneID:100622043 KEGG:ssc:100622043
Uniprot:I3LC46
Length = 760
Score = 764 (274.0 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 154/349 (44%), Positives = 215/349 (61%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+T ++ T Y WD +K AWFPK+ +DF+A YQ +YGF D SA VQ
Sbjct: 36 GETDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSN-----DGASSSAASVQ 90
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
V ++ + + P+ + G+KRK E WF + E+ +T VYVS LP D+T +E
Sbjct: 91 D-VSARTTEEPPQRKTPEPSDPRKKGEKRKAESG-WFHVEEDRNTNVYVSGLPPDITVDE 148
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESVDLAL +LD EIR
Sbjct: 149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207
Query: 292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
G K+ VE AKF +KGE YD DWRP++ G R ++E
Sbjct: 208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPERRAGPSRMRHER 264
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F+EPE
Sbjct: 265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFREPEE 324
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
AD C + L+GRWFG RQITAE WDG T Y+++E+ ERE RL+ WE FL
Sbjct: 325 ADYCIQTLDGRWFGGRQITAEAWDGTTDYQVEESTREREERLRGWEAFL 373
Score = 622 (224.0 bits), Expect = 1.8e-64, Sum P(2) = 1.8e-64
Identities = 120/246 (48%), Positives = 163/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESVDLAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 191 RESVDLALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F+EPE AD C + L+GRWFG RQITAE WDG T Y+++E+ ERE RL+
Sbjct: 308 DRHPDGVASVSFREPEEADYCIQTLDGRWFGGRQITAEAWDGTTDYQVEESTREREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 53 (23.7 bits), Expect = 2.0e-79, Sum P(2) = 2.0e-79
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 17 DPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSV 70
D Q R Q + + K+ + E D F + T Y+WD +W P +
Sbjct: 13 DEQLRMQELYGDTKDGDTQKDPGGETDS---FGQQPADTPYEWDLDKKAWFPKI 63
>UNIPROTKB|E2R8T8 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 EMBL:AAEX03026952
Ensembl:ENSCAFT00000035753 NextBio:20855936 Uniprot:E2R8T8
Length = 750
Score = 757 (271.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 151/349 (43%), Positives = 217/349 (62%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+ ++ T Y WD +K AWFPK+ +DF+A YQ +YGF + +A+ VQ
Sbjct: 36 GEPDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSNE----GASSSTAN-VQ 90
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
+V ++ + + P+ + G+KRK EP WF + E+ +T VYVS LP D+T +E
Sbjct: 91 -EVSARTAEEPPQRKTPEPNDPKKRGEKRKAEPG-WFHVEEDRNTNVYVSGLPPDITVDE 148
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESVDLAL +LD EIR
Sbjct: 149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207
Query: 292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
G K+ VE AKF +KGE YD DWRP++ G R ++E
Sbjct: 208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPSRMRHER 264
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F++PE
Sbjct: 265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEE 324
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
AD C + L+GRWFG RQITA+ WDG T Y+++ET ERE RL+ WE FL
Sbjct: 325 ADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLRGWEAFL 373
Score = 620 (223.3 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 119/246 (48%), Positives = 163/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESVDLAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 191 RESVDLALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+++ET ERE RL+
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 52 (23.4 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 17 DPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSV 70
D Q R Q + + K+ + E D F + T Y+WD +W P +
Sbjct: 13 DEQLRMQELYGDAKDGDTQKDPSGEPDS---FGQQPADTPYEWDLDKKAWFPKI 63
>UNIPROTKB|J9NZQ1 [details] [associations]
symbol:HTATSF1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000009902 KO:K13093 CTD:27336 OMA:MQELYGD
EMBL:AAEX03026952 RefSeq:XP_538183.3 Ensembl:ENSCAFT00000048239
GeneID:481062 KEGG:cfa:481062 Uniprot:J9NZQ1
Length = 768
Score = 757 (271.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 151/349 (43%), Positives = 217/349 (62%)
Query: 113 GDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQ 172
G+ ++ T Y WD +K AWFPK+ +DF+A YQ +YGF + +A+ VQ
Sbjct: 36 GEPDSFGQQPADTPYEWDLDKKAWFPKITEDFIATYQANYGFSNE----GASSSTAN-VQ 90
Query: 173 SKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVYVSNLPLDLTQEE 231
+V ++ + + P+ + G+KRK EP WF + E+ +T VYVS LP D+T +E
Sbjct: 91 -EVSARTAEEPPQRKTPEPNDPKKRGEKRKAEPG-WFHVEEDRNTNVYVSGLPPDITVDE 148
Query: 232 FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR 291
F+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESVDLAL +LD EIR
Sbjct: 149 FIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVDLALKLLDEDEIR 207
Query: 292 GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRG-ERSKNES 350
G K+ VE AKF +KGE YD DWRP++ G R ++E
Sbjct: 208 GYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQLDWRPERRAGPSRMRHER 264
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA + F++PE
Sbjct: 265 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEE 324
Query: 411 ADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
AD C + L+GRWFG RQITA+ WDG T Y+++ET ERE RL+ WE FL
Sbjct: 325 ADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLRGWEAFL 373
Score = 620 (223.3 bits), Expect = 3.7e-64, Sum P(2) = 3.7e-64
Identities = 119/246 (48%), Positives = 163/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESVDLAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 191 RESVDLALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSLQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+++ET ERE RL+
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETTREREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 52 (23.4 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 17 DPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSV 70
D Q R Q + + K+ + E D F + T Y+WD +W P +
Sbjct: 13 DEQLRMQELYGDAKDGDTQKDPSGEPDS---FGQQPADTPYEWDLDKKAWFPKI 63
>UNIPROTKB|O43719 [details] [associations]
symbol:HTATSF1 "HIV Tat-specific factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0019079 "viral genome replication" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0006351 GO:GO:0003723
EMBL:CH471150 EMBL:Z97632 GO:GO:0019079 eggNOG:NOG317500 KO:K13093
GO:GO:0032784 EMBL:U76992 EMBL:BT006886 EMBL:AB209303 EMBL:BC009896
IPI:IPI00013788 RefSeq:NP_001156752.1 RefSeq:NP_055315.2
UniGene:Hs.204475 PDB:2DIT PDBsum:2DIT ProteinModelPortal:O43719
SMR:O43719 DIP:DIP-42095N IntAct:O43719 MINT:MINT-1193787
STRING:O43719 PhosphoSite:O43719 PaxDb:O43719 PeptideAtlas:O43719
PRIDE:O43719 DNASU:27336 Ensembl:ENST00000218364
Ensembl:ENST00000535601 GeneID:27336 KEGG:hsa:27336 UCSC:uc004ezw.3
CTD:27336 GeneCards:GC0XP135579 HGNC:HGNC:5276 HPA:HPA000504
MIM:300346 neXtProt:NX_O43719 PharmGKB:PA29540 HOGENOM:HOG000049201
HOVERGEN:HBG059454 InParanoid:O43719 OMA:MQELYGD OrthoDB:EOG4BRWKT
PhylomeDB:O43719 ChiTaRS:HTATSF1 EvolutionaryTrace:O43719
GenomeRNAi:27336 NextBio:50396 PMAP-CutDB:O43719
ArrayExpress:O43719 Bgee:O43719 CleanEx:HS_HTATSF1
Genevestigator:O43719 GermOnline:ENSG00000102241 Uniprot:O43719
Length = 755
Score = 751 (269.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 159/361 (44%), Positives = 222/361 (61%)
Query: 110 GYEGDTHTYT----DS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
G +GDT T DS TD T Y WD +K AWFPK+ +DF+A YQ +YGF +
Sbjct: 25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN--DG 81
Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
+ + V ++ E+ AP E A +K G+KRK E WF + E+ +T VY
Sbjct: 82 ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAESG-WFHVEEDRNTNVY 136
Query: 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
VS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESV+
Sbjct: 137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVE 195
Query: 280 LALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPD 339
LAL +LD EIRG K+ VE AKF +KGE YD DWRP+
Sbjct: 196 LALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQLDWRPE 252
Query: 340 KMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
+ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+
Sbjct: 253 RRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPD 312
Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETF 458
GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+ WE F
Sbjct: 313 GVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLRGWEAF 372
Query: 459 L 459
L
Sbjct: 373 L 373
Score = 617 (222.3 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 118/246 (47%), Positives = 164/246 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXF 619
+ESV+LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YD--ASKKKKKCKDYKKKLSMQQKQL 247
Query: 620 DWRPDKMRG-ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH 678
DWRP++ G R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L
Sbjct: 248 DWRPERRAGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF 307
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLK 738
D+HP+GVA + F++PE AD C + L+GRWFG RQITA+ WDG T Y+++ET+ ERE RL+
Sbjct: 308 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQVEETSREREERLR 367
Query: 739 KWETFL 744
WE FL
Sbjct: 368 GWEAFL 373
Score = 51 (23.0 bits), Expect = 9.9e-64, Sum P(2) = 9.9e-64
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 53 TGTKYKWDTASNSWVPSV 70
T T Y+WD +W P +
Sbjct: 46 TDTPYEWDLDKKAWFPKI 63
Score = 39 (18.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 680 KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREA 735
+HP +++ +E A E ++ + F + + E +G + +E++ E+EA
Sbjct: 404 EHPS-TSKMNAQETATGMAFEEPIDEKKFEKTEDGGEFEEGASENNAKESSPEKEA 458
>WB|WBGene00022025 [details] [associations]
symbol:Y65B4A.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003676 GO:GO:0042127 GO:GO:0007281
GO:GO:0040020 GO:GO:0040022 eggNOG:NOG317500
GeneTree:ENSGT00390000009902 KO:K13093 EMBL:FO081482
RefSeq:NP_490765.1 ProteinModelPortal:Q9BL57 SMR:Q9BL57
PaxDb:Q9BL57 EnsemblMetazoa:Y65B4A.1 GeneID:171656
KEGG:cel:CELE_Y65B4A.1 UCSC:Y65B4A.1 CTD:171656 WormBase:Y65B4A.1
HOGENOM:HOG000152129 InParanoid:Q9BL57 OMA:AAYQANY NextBio:872173
Uniprot:Q9BL57
Length = 442
Score = 637 (229.3 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 130/338 (38%), Positives = 197/338 (58%)
Query: 127 YIWDKEKNAWFPK-----VDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVD 181
Y WD+EK W PK V++DF+A YQ +YG Q + + KK +L + + + D
Sbjct: 91 YDWDEEKKEWVPKAKQEEVNEDFIAEYQANYGV--QYDDI-YKKMDEELQEKAAKAQKED 147
Query: 182 ATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGL 241
+ K + + G+ K W D+G++ VYVSNLP D+T EEF + M KCG+
Sbjct: 148 EEKKEKKRKKKVGLGAGEDAKEG---WLDLGDKVHAVYVSNLPEDITDEEFQKFMSKCGV 204
Query: 242 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ D+ TN+ K KLY + K KGD C YIKKESV+LA +ILDG + G+++KVE A+
Sbjct: 205 IQPDIRTNKPKCKLYREENGK-LKGDGRCCYIKKESVELACNILDGANLNGREVKVEEAR 263
Query: 302 FTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDKMRGERSKNESVIIVKNLFDPA 361
F MKG+ +DP F+W PDK R R K++ +IVKNLF
Sbjct: 264 FEMKGD-FDPARKRRKLTAAQKKRYMEQQNKIFEWTPDKPRNYRPKSDCTVIVKNLFTQE 322
Query: 362 LFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 421
+ +K+ L+L+ ++++ + C K G VKKVV++ HP+GV + F E +D + L+GR
Sbjct: 323 MMNKNAALMLDLKEEMTQSCQKYGIVKKVVVYANHPDGVVSVTFPTTEESDMAVKYLHGR 382
Query: 422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFL 459
R++TAE WDG+T++K++ET E+ E R K++E ++
Sbjct: 383 VVDGRKLTAELWDGRTKFKVEETEEDEEKRRKEYEKYI 420
Score = 543 (196.2 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 103/242 (42%), Positives = 152/242 (62%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
VYVSNLP D+T EEF + M KCG++ D+ TN+ K KLY + K KGD C YIKKES
Sbjct: 181 VYVSNLPEDITDEEFQKFMSKCGVIQPDIRTNKPKCKLYREENGK-LKGDGRCCYIKKES 239
Query: 563 VDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWR 622
V+LA +ILDG + G+++KVE A+F MKG+ +DP F+W
Sbjct: 240 VELACNILDGANLNGREVKVEEARFEMKGD-FDPARKRRKLTAAQKKRYMEQQNKIFEWT 298
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 682
PDK R R K++ +IVKNLF + +K+ L+L+ ++++ + C K G VKKVV++ HP
Sbjct: 299 PDKPRNYRPKSDCTVIVKNLFTQEMMNKNAALMLDLKEEMTQSCQKYGIVKKVVVYANHP 358
Query: 683 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWET 742
+GV + F E +D + L+GR R++TAE WDG+T++K++ET E+ E R K++E
Sbjct: 359 DGVVSVTFPTTEESDMAVKYLHGRVVDGRKLTAELWDGRTKFKVEETEEDEEKRRKEYEK 418
Query: 743 FL 744
++
Sbjct: 419 YI 420
Score = 55 (24.4 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 17 DPQSRQQYTWDNEKNEW----KLRQIDYEFDGSNYFYKDKTGTKY 57
+ ++ + Y WD EK EW K +++ +F Y+ G +Y
Sbjct: 84 EKKAHRHYDWDEEKKEWVPKAKQEEVNEDFIAE---YQANYGVQY 125
Score = 46 (21.3 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 32 EWKLRQID-YEFDGSNYFYKD----KTGTKYKWDTASNSWVP 68
+W+ +D EF +F ++ K Y WD WVP
Sbjct: 61 DWEPVGLDEVEFLSQLWFEQEDQEKKAHRHYDWDEEKKEWVP 102
Score = 38 (18.4 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 5/11 (45%), Positives = 8/11 (72%)
Query: 415 RELLNGRWFGQ 425
R LN +W+G+
Sbjct: 37 RRFLNNKWYGK 47
>ASPGD|ASPL0000056254 [details] [associations]
symbol:AN1188 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0003676 ProteinModelPortal:C8VT05
EnsemblFungi:CADANIAT00001437 OMA:VILKHMF Uniprot:C8VT05
Length = 396
Score = 389 (142.0 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 103/339 (30%), Positives = 172/339 (50%)
Query: 129 WDKEKNAWFPKVDDDFLAR----YQMSYGFIEQP--NTVDEKKPSADLVQSKVEEKSVDA 182
+D + F K+D+ F+ + SY I + T+D+ KVE D
Sbjct: 29 FDSDPRVSFSKLDNKFILETDDGQEYSYDTILKRWIPTIDDDLLRQQQEAYKVEGVDEDE 88
Query: 183 TAPMENPKAEEKV--VPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCG 240
A + K + K G +KP+ + +T V+V+++PLD +E ++ +CG
Sbjct: 89 QAGAQRLKKKRKQGSEEGDAQKPKKQR------VNTAVFVTSIPLDAEFDEIRDIFSRCG 142
Query: 241 LVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR----GKK-- 294
++ +++D+ + +IK+YTD K FKG+AL Y + ESV+LA+ +LD + R G +
Sbjct: 143 VIAEEIDSGRPRIKMYTDDEGK-FKGEALVVYFRPESVNLAIQMLDDSDFRLGVPGPQGP 201
Query: 295 IKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFDWRPDK---MRGERSKNESV 351
++V+ A F+ K + P DW D+ + SK E +
Sbjct: 202 MRVQPADFSFKSQQEAPTKTSMRDKKKIIKRTQKLNNKLADWDDDEPAALVDTNSKFEKI 261
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
+I+K++F ++D IL+ ++D+REECSK G V VVL+DK GV + F PE+A
Sbjct: 262 VILKHMFTLQELEEDPAAILDIKEDIREECSKLGEVTNVVLYDKEEAGVVSVRFSNPESA 321
Query: 412 DACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREA 450
AC +L+NGR+FG + A DG R++ ++ E+R A
Sbjct: 322 RACVKLMNGRFFGGTAVEAYISDGSERFR--KSNEKRAA 358
Score = 380 (138.8 bits), Expect = 3.9e-40, Sum P(2) = 3.9e-40
Identities = 84/245 (34%), Positives = 138/245 (56%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT V+V+++PLD +E ++ +CG++ +++D+ + +IK+YTD K FKG+AL Y +
Sbjct: 117 NTAVFVTSIPLDAEFDEIRDIFSRCGVIAEEIDSGRPRIKMYTDDEGK-FKGEALVVYFR 175
Query: 560 KESVDLALSILDGYEIR----GKK--IKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXX 613
ESV+LA+ +LD + R G + ++V+ A F+ K + P
Sbjct: 176 PESVNLAIQMLDDSDFRLGVPGPQGPMRVQPADFSFKSQQEAPTKTSMRDKKKIIKRTQK 235
Query: 614 XXXXXFDWRPDK---MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG 670
DW D+ + SK E ++I+K++F ++D IL+ ++D+REECSK G
Sbjct: 236 LNNKLADWDDDEPAALVDTNSKFEKIVILKHMFTLQELEEDPAAILDIKEDIREECSKLG 295
Query: 671 HVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETA 730
V VVL+DK GV + F PE+A AC +L+NGR+FG + A DG R++ ++
Sbjct: 296 EVTNVVLYDKEEAGVVSVRFSNPESARACVKLMNGRFFGGTAVEAYISDGSERFR--KSN 353
Query: 731 EEREA 735
E+R A
Sbjct: 354 EKRAA 358
Score = 77 (32.2 bits), Expect = 3.9e-40, Sum P(2) = 3.9e-40
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 114 DTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNTVDE-KKPSADLVQ 172
D ++ DG Y +D W P +DDD L + Q +Y +E VDE ++ A ++
Sbjct: 41 DNKFILETDDGQEYSYDTILKRWIPTIDDDLLRQQQEAYK-VEG---VDEDEQAGAQRLK 96
Query: 173 SKVEEKSVDATAPMENPKAE 192
K ++ S + A + PK +
Sbjct: 97 KKRKQGSEEGDA--QKPKKQ 114
Score = 48 (22.0 bits), Expect = 4.3e-37, Sum P(2) = 4.3e-37
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 45 SNYFYKDKTGTKYKWDTASNSWVPSV 70
+ + + G +Y +DT W+P++
Sbjct: 42 NKFILETDDGQEYSYDTILKRWIPTI 67
>TAIR|locus:2181452 [details] [associations]
symbol:ELF9 "EARLY FLOWERING 9" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0009910 "negative regulation of flower
development" evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] InterPro:IPR000504 InterPro:IPR003169
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0000184 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009910 SUPFAM:SSF55277 HSSP:Q01081 EMBL:AL391148
eggNOG:NOG317500 KO:K13093 InterPro:IPR025640 Pfam:PF14237
OMA:AAYQANY EMBL:BT022024 EMBL:AK229192 IPI:IPI00529602 PIR:T51496
RefSeq:NP_197130.1 UniGene:At.10000 ProteinModelPortal:Q9LF02
SMR:Q9LF02 PaxDb:Q9LF02 PRIDE:Q9LF02 EnsemblPlants:AT5G16260.1
GeneID:831486 KEGG:ath:AT5G16260 TAIR:At5g16260
HOGENOM:HOG000240892 InParanoid:Q9LF02 PhylomeDB:Q9LF02
ProtClustDB:CLSN2916222 Genevestigator:Q9LF02 Uniprot:Q9LF02
Length = 519
Score = 318 (117.0 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 86/226 (38%), Positives = 125/226 (55%)
Query: 103 DMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDD-----DFLARYQMSYGFIEQ 157
D + S EG+ +TD DGT Y WD+ + W P+ D D +M++ ++
Sbjct: 150 DHERASSPPEGEDE-FTDD-DGTKYKWDRARRVWVPQDDPPLGSVDPYGLEEMTFAKEDE 207
Query: 158 --PN------TVDEKKPSADLVQSKVEEKSVDATAPME-NPKAEEKVVPGQKRKP-EPP- 206
P +VD+K S D V K EE D TA + N K + +K++P +PP
Sbjct: 208 VFPTINILDTSVDKKDASKDDVAGKKEEDGSDETAEINSNGKRKLPEPETEKKEPNKPPD 267
Query: 207 KWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 266
WF++ + + +YV+ LP D+T EE EV KCG++ +D DT + +IKLY+D T KG
Sbjct: 268 SWFEL-KVNPHIYVNGLPDDVTIEEVAEVFSKCGIIKED-DTGKPRIKLYSDKATGKLKG 325
Query: 267 DALCTYIKKESVDLALSILDGYEIR-GKKI--KVERAKFTMKGEAY 309
DAL +Y+K+ SVDLA+ ILDG +R K+ V RAKF KGE +
Sbjct: 326 DALISYMKEPSVDLAIKILDGAPLRPADKLLMSVSRAKFEQKGERF 371
Score = 226 (84.6 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 49/98 (50%), Positives = 65/98 (66%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N +YV+ LP D+T EE EV KCG++ +D DT + +IKLY+D T KGDAL +Y+K
Sbjct: 275 NPHIYVNGLPDDVTIEEVAEVFSKCGIIKED-DTGKPRIKLYSDKATGKLKGDALISYMK 333
Query: 560 KESVDLALSILDGYEIR-GKKI--KVERAKFTMKGEAY 594
+ SVDLA+ ILDG +R K+ V RAKF KGE +
Sbjct: 334 EPSVDLAIKILDGAPLRPADKLLMSVSRAKFEQKGERF 371
Score = 164 (62.8 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 694
+ ++++ +F PA D L+ E ++D++EE K G V + + HP+GV + FK+
Sbjct: 406 ATVVLRYMFSPAELMADEDLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRR 465
Query: 695 AADACRELLNGRWFGQRQITAETWDGKTRY 724
A C E +NGRW+ +RQI A DG +
Sbjct: 466 DAQKCIEAMNGRWYAKRQIHASLDDGSVNH 495
Score = 164 (62.8 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
+ ++++ +F PA D L+ E ++D++EE K G V + + HP+GV + FK+
Sbjct: 406 ATVVLRYMFSPAELMADEDLVAELEEDVKEESLKHGPFDSVKVCEHHPQGVVLVRFKDRR 465
Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRY 439
A C E +NGRW+ +RQI A DG +
Sbjct: 466 DAQKCIEAMNGRWYAKRQIHASLDDGSVNH 495
Score = 74 (31.1 bits), Expect = 3.2e-31, Sum P(3) = 3.2e-31
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 43 DGSNYFYKDKTGTKYKWDTASNSWVP 68
+G + F D GTKYKWD A WVP
Sbjct: 159 EGEDEF-TDDDGTKYKWDRARRVWVP 183
Score = 42 (19.8 bits), Expect = 4.3e-39, Sum P(3) = 4.3e-39
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 463 IKVERAKFTMKGEAY 477
+ V RAKF KGE +
Sbjct: 357 MSVSRAKFEQKGERF 371
Score = 37 (18.1 bits), Expect = 2.2e-27, Sum P(3) = 2.2e-27
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 15 YTDPQSRQQYTWDNEKNEW 33
+TD + Y WD + W
Sbjct: 164 FTDDDGTK-YKWDRARRVW 181
Score = 37 (18.1 bits), Expect = 1.3e-11, Sum P(4) = 1.3e-11
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 375 QDLREECSKCGHVK-------KVVLH-DKHP---EGVAQI-FFKEPEAADACRELLNG 420
+++ E SKCG +K ++ L+ DK +G A I + KEP + D ++L+G
Sbjct: 290 EEVAEVFSKCGIIKEDDTGKPRIKLYSDKATGKLKGDALISYMKEP-SVDLAIKILDG 346
>UNIPROTKB|Q5H918 [details] [associations]
symbol:HTATSF1 "HIV Tat-specific factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:Z97632 UniGene:Hs.204475 HGNC:HGNC:5276
HOVERGEN:HBG059454 ChiTaRS:HTATSF1 IPI:IPI00644220 SMR:Q5H918
STRING:Q5H918 Ensembl:ENST00000448450 HOGENOM:HOG000202112
Uniprot:Q5H918
Length = 244
Score = 400 (145.9 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 94/211 (44%), Positives = 128/211 (60%)
Query: 110 GYEGDTHTYT----DS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
G +GDT T DS TD T Y WD +K AWFPK+ +DF+A YQ +YGF +
Sbjct: 25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN--DG 81
Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
+ + V ++ E+ AP E A +K G+KRK E WF + E+ +T VY
Sbjct: 82 ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAESG-WFHVEEDRNTNVY 136
Query: 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
VS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESV+
Sbjct: 137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVE 195
Query: 280 LALSILDGYEIRGKKIKVERAKFTMKGEAYD 310
LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 196 LALKLLDEDEIRGYKLHVEVAKFQLKGE-YD 225
Score = 266 (98.7 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 53/96 (55%), Positives = 70/96 (72%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYD 595
+ESV+LAL +LD EIRG K+ VE AKF +KGE YD
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE-YD 225
Score = 51 (23.0 bits), Expect = 6.6e-25, Sum P(2) = 6.6e-25
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 53 TGTKYKWDTASNSWVPSV 70
T T Y+WD +W P +
Sbjct: 46 TDTPYEWDLDKKAWFPKI 63
Score = 37 (18.1 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 24 YTWDNEKNEW 33
Y WD +K W
Sbjct: 50 YEWDLDKKAW 59
>UNIPROTKB|Q5H919 [details] [associations]
symbol:HTATSF1 "HIV Tat-specific factor 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:Z97632 UniGene:Hs.204475 HGNC:HGNC:5276
ChiTaRS:HTATSF1 HOGENOM:HOG000202112 IPI:IPI00644724 SMR:Q5H919
MINT:MINT-1403689 STRING:Q5H919 Ensembl:ENST00000425695
Uniprot:Q5H919
Length = 223
Score = 396 (144.5 bits), Expect = 3.6e-36, P = 3.6e-36
Identities = 92/208 (44%), Positives = 126/208 (60%)
Query: 110 GYEGDTHTYT----DS-----TDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQPNT 160
G +GDT T DS TD T Y WD +K AWFPK+ +DF+A YQ +YGF +
Sbjct: 25 GKDGDTQTDAGGEPDSLGQQPTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSN--DG 81
Query: 161 VDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-STKVY 219
+ + V ++ E+ AP E A +K G+KRK E WF + E+ +T VY
Sbjct: 82 ASSSTANVEDVHARTAEEPPQEKAP-EPTDARKK---GEKRKAESG-WFHVEEDRNTNVY 136
Query: 220 VSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD 279
VS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K+ESV+
Sbjct: 137 VSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLKRESVE 195
Query: 280 LALSILDGYEIRGKKIKVERAKFTMKGE 307
LAL +LD EIRG K+ VE AKF +KGE
Sbjct: 196 LALKLLDEDEIRGYKLHVEVAKFQLKGE 223
Score = 262 (97.3 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 51/93 (54%), Positives = 68/93 (73%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT VYVS LP D+T +EF+++M K G++M+D T + K+KLY D + KGD LC Y+K
Sbjct: 132 NTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQG-NLKGDGLCCYLK 190
Query: 560 KESVDLALSILDGYEIRGKKIKVERAKFTMKGE 592
+ESV+LAL +LD EIRG K+ VE AKF +KGE
Sbjct: 191 RESVELALKLLDEDEIRGYKLHVEVAKFQLKGE 223
Score = 51 (23.0 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 53 TGTKYKWDTASNSWVPSV 70
T T Y+WD +W P +
Sbjct: 46 TDTPYEWDLDKKAWFPKI 63
Score = 37 (18.1 bits), Expect = 5.1e-23, Sum P(2) = 5.1e-23
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 24 YTWDNEKNEW 33
Y WD +K W
Sbjct: 50 YEWDLDKKAW 59
>POMBASE|SPBC1289.02c [details] [associations]
symbol:uap2 "U2 snRNP-associated protein Uap2"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005686 "U2
snRNP" evidence=IPI] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC1289.02c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GenomeReviews:CU329671_GR
GO:GO:0005681 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG317500 KO:K13093 OMA:HISENED OrthoDB:EOG4JWZQ8
EMBL:U97681 PIR:T39353 RefSeq:NP_596826.1 ProteinModelPortal:O43120
IntAct:O43120 STRING:O43120 EnsemblFungi:SPBC1289.02c.1
GeneID:2539783 KEGG:spo:SPBC1289.02c HOGENOM:HOG000207452
NextBio:20800932 Uniprot:O43120
Length = 367
Score = 366 (133.9 bits), Expect = 6.8e-33, P = 6.8e-33
Identities = 94/319 (29%), Positives = 151/319 (47%)
Query: 435 GKTRYKIQE-TAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXX 493
G T ++ + TAE E + E+ G+ +R + E Y
Sbjct: 47 GSTGAEVSDVTAEATEGK----ESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENSEA 102
Query: 494 XXXAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGD 552
N VY+ LPLD+T +E EV +KCG++ K++D +IK+Y T+ T KGD
Sbjct: 103 SPAPVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP--KGD 160
Query: 553 ALCTYIKKESVDLALSILDGYEIR---GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXX 609
AL + + ESV+LA + D E R G+K++V++A K E
Sbjct: 161 ALIVFFRSESVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALR 220
Query: 610 XXXXXXXXXFDWRP--DKMRGERSKN-ESVIIVKNLFDPALFDKDVTLILEYQQDLREEC 666
W +++ +R K ++++K++F DK L+++ + D+ EE
Sbjct: 221 LRQQQMQQISSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEA 280
Query: 667 SKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI 726
KCG V VVL+DK P+GV + F E A+AC L+ GR+F R + A +DGK R++
Sbjct: 281 EKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQK 340
Query: 727 --QETAEEREARLKKWETF 743
+ T ++ E K+ E F
Sbjct: 341 SGKHTLDDEEDEEKRLEKF 359
Score = 358 (131.1 bits), Expect = 5.1e-32, P = 5.1e-32
Identities = 82/250 (32%), Positives = 131/250 (52%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY-TDPYTKDFKGDALCTYIKKE 276
VY+ LPLD+T +E EV +KCG++ K++D +IK+Y T+ T KGDAL + + E
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTP--KGDALIVFFRSE 169
Query: 277 SVDLALSILDGYEIR---GKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXX 333
SV+LA + D E R G+K++V++A K E
Sbjct: 170 SVELAEQLFDDTEFRYGSGQKMRVQKANIDYKKEKTVNKDVGGALKKKALRLRQQQMQQI 229
Query: 334 FDWRP--DKMRGERSKN-ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKV 390
W +++ +R K ++++K++F DK L+++ + D+ EE KCG V V
Sbjct: 230 SSWDDVDEEVDDKRKKRFNKIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNV 289
Query: 391 VLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKI--QETAEER 448
VL+DK P+GV + F E A+AC L+ GR+F R + A +DGK R++ + T ++
Sbjct: 290 VLYDKEPDGVVTVRFSNNEEAEACVRLMQGRYFDGRVVEASIYDGKVRFQKSGKHTLDDE 349
Query: 449 EARLKKWETF 458
E K+ E F
Sbjct: 350 EDEEKRLEKF 359
>UNIPROTKB|G4MSB8 [details] [associations]
symbol:MGG_04442 "Splicing factor U2AF-associated protein
2" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001232 KO:K13093 RefSeq:XP_003713537.1
ProteinModelPortal:G4MSB8 EnsemblFungi:MGG_04442T0 GeneID:2677962
KEGG:mgr:MGG_04442 Uniprot:G4MSB8
Length = 410
Score = 196 (74.1 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 49/143 (34%), Positives = 79/143 (55%)
Query: 176 EEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEV 235
E++ AT + K + K K + P+ ++T VYV+ LPLD+T EE E+
Sbjct: 84 EDEEAPATTAADRRKKKRKAGDDDGGKAKRPR------QNTAVYVTGLPLDVTVEEIAEL 137
Query: 236 M-QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIR--- 291
+KCG++ +++D + +IKLYTD +FKGDAL + K +SVD+A+ +LD + R
Sbjct: 138 FSRKCGVIAENIDDSSPRIKLYTDG-GGNFKGDALVVFFKPQSVDMAIMLLDDTDFRITP 196
Query: 292 ----GKKIKVERAKFTMKGEAYD 310
+I+V+ A + K YD
Sbjct: 197 SGLSSGRIRVQAADTSYKRNNYD 219
Score = 194 (73.4 bits), Expect = 3.4e-30, Sum P(3) = 3.4e-30
Identities = 43/106 (40%), Positives = 67/106 (63%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVM-QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
++NT VYV+ LPLD+T EE E+ +KCG++ +++D + +IKLYTD +FKGDAL
Sbjct: 115 RQNTAVYVTGLPLDVTVEEIAELFSRKCGVIAENIDDSSPRIKLYTDG-GGNFKGDALVV 173
Query: 557 YIKKESVDLALSILDGYEIR-------GKKIKVERAKFTMKGEAYD 595
+ K +SVD+A+ +LD + R +I+V+ A + K YD
Sbjct: 174 FFKPQSVDMAIMLLDDTDFRITPSGLSSGRIRVQAADTSYKRNNYD 219
Score = 184 (69.8 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFK 406
K E +I++++F D+D +LE ++D+R+EC K G V VL D +G+ + F+
Sbjct: 303 KAERTVILRHMFTLKELDEDPAALLEIKEDIRDECEKLGEVTNCVLFDLEEDGIVSVRFR 362
Query: 407 EPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
P+AA+AC +L++GR F R + A GK +Y+
Sbjct: 363 TPDAAEACIKLMHGRSFDGRTVQASLATGKEKYR 396
Score = 184 (69.8 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 34/94 (36%), Positives = 57/94 (60%)
Query: 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFK 691
K E +I++++F D+D +LE ++D+R+EC K G V VL D +G+ + F+
Sbjct: 303 KAERTVILRHMFTLKELDEDPAALLEIKEDIRDECEKLGEVTNCVLFDLEEDGIVSVRFR 362
Query: 692 EPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
P+AA+AC +L++GR F R + A GK +Y+
Sbjct: 363 TPDAAEACIKLMHGRSFDGRTVQASLATGKEKYR 396
Score = 73 (30.8 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 123 DGTVYIWDKEKNAWFPKVDDDFLARYQMSYG 153
DG Y WD W P VDD + +Q +YG
Sbjct: 49 DGAEYEWDGGLKRWIPIVDDALIESHQAAYG 79
Score = 54 (24.1 bits), Expect = 1.8e-28, Sum P(3) = 1.8e-28
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 45 SNYFYKDKTGTKYKWDTASNSWVPSV 70
+ Y + G +Y+WD W+P V
Sbjct: 41 NKYIAVQEDGAEYEWDGGLKRWIPIV 66
>DICTYBASE|DDB_G0289547 [details] [associations]
symbol:DDB_G0289547 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000142 eggNOG:NOG317500 KO:K13093
OMA:VILKHMF RefSeq:XP_636172.1 ProteinModelPortal:Q54HD0
EnsemblProtists:DDB0233213 GeneID:8627195 KEGG:ddi:DDB_G0289547
InParanoid:Q54HD0 ProtClustDB:CLSZ2429050 Uniprot:Q54HD0
Length = 387
Score = 283 (104.7 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 70/249 (28%), Positives = 122/249 (48%)
Query: 218 VYVSNLPLD--LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
+++S +P+D + + + ++KCG + K+ + + I L D + F G AL ++ +K
Sbjct: 147 LHISGIPMDGSIRELQISNYLKKCGYIKKN-EYGRPIISLLVDNENQ-FTGCALVSFERK 204
Query: 276 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFD 335
ESV +A+ D EI I + K T+ + +
Sbjct: 205 ESVPIAILQYDETEISPNNI-IRIRKATL-----EESKLHLVNEKSNKKQKKSHKDRRSE 258
Query: 336 WRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREE---CSKCGHVKKVVL 392
+ + G +I+KNLF P D + Q DL +E C KCG + + +
Sbjct: 259 YENEAKYGWADSESKTVIIKNLFSPEEAMVDPNFFNDLQADLEDETHGCGKCGPISSIHI 318
Query: 393 HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 452
+ +P+GV + F E E+A C L+N R+FG R+++A+ +DG + Y ++ET E +E RL
Sbjct: 319 FEYNPDGVVSVKFSEFESAKKCVALMNDRFFGGRKLSADFYDGYSNYYVEETDENKEKRL 378
Query: 453 KKWETFLGK 461
KKWE+++ K
Sbjct: 379 KKWESYINK 387
Score = 278 (102.9 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
Identities = 69/247 (27%), Positives = 121/247 (48%)
Query: 503 VYVSNLPLD--LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
+++S +P+D + + + ++KCG + K+ + + I L D + F G AL ++ +K
Sbjct: 147 LHISGIPMDGSIRELQISNYLKKCGYIKKN-EYGRPIISLLVDNENQ-FTGCALVSFERK 204
Query: 561 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXXXXXXFD 620
ESV +A+ D EI I + K T+ + +
Sbjct: 205 ESVPIAILQYDETEISPNNI-IRIRKATL-----EESKLHLVNEKSNKKQKKSHKDRRSE 258
Query: 621 WRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREE---CSKCGHVKKVVL 677
+ + G +I+KNLF P D + Q DL +E C KCG + + +
Sbjct: 259 YENEAKYGWADSESKTVIIKNLFSPEEAMVDPNFFNDLQADLEDETHGCGKCGPISSIHI 318
Query: 678 HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARL 737
+ +P+GV + F E E+A C L+N R+FG R+++A+ +DG + Y ++ET E +E RL
Sbjct: 319 FEYNPDGVVSVKFSEFESAKKCVALMNDRFFGGRKLSADFYDGYSNYYVEETDENKEKRL 378
Query: 738 KKWETFL 744
KKWE+++
Sbjct: 379 KKWESYI 385
Score = 65 (27.9 bits), Expect = 2.8e-27, Sum P(2) = 2.8e-27
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 103 DMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSY 152
D +K + +GD TY D T YI++ W ++ D + Q Y
Sbjct: 79 DENKIKFNKDGDK-TYFSEKDNTHYIYNTHSKQWLAEITKDMMNSQQSVY 127
Score = 62 (26.9 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 31 NEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSV 70
NE +I + DG ++ +K T Y ++T S W+ +
Sbjct: 76 NEIDENKIKFNKDGDKTYFSEKDNTHYIYNTHSKQWLAEI 115
>SGD|S000005230 [details] [associations]
symbol:CUS2 "Protein that binds to U2 snRNA and Prp11p"
species:4932 "Saccharomyces cerevisiae" [GO:0003723 "RNA binding"
evidence=IEA;ISS;IMP] [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IPI] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 SGD:S000005230
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0005681
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 EMBL:Z71562 EMBL:AY558016
PIR:S63260 RefSeq:NP_014113.1 ProteinModelPortal:P53830 SMR:P53830
DIP:DIP-2316N IntAct:P53830 MINT:MINT-2787174 STRING:P53830
PaxDb:P53830 EnsemblFungi:YNL286W GeneID:855430 KEGG:sce:YNL286W
CYGD:YNL286w eggNOG:NOG317500 GeneTree:ENSGT00390000009902
KO:K13093 OMA:HISENED OrthoDB:EOG4JWZQ8 NextBio:979307
Genevestigator:P53830 GermOnline:YNL286W Uniprot:P53830
Length = 285
Score = 208 (78.3 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 69/238 (28%), Positives = 112/238 (47%)
Query: 497 AQENTKVYVSNLPLDLTQEE-FVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
A +NT +Y+S LP D T +E E K G++ + D + KLY + FKGDAL
Sbjct: 41 ASKNTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGEPL-CKLYVNDKGA-FKGDALI 98
Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAKF------TMKGEAYDPXXXXXXX--XXXX 607
TY K+ESV LA+ +++ GK+I+VERA+F M G+ D
Sbjct: 99 TYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKEGDNMHGKENDLKEFNGPEPPIKRL 158
Query: 608 XXXXXXXXXXXFDWRPDKMRGERSKNESVIIVKNLFD--PALFDKDVTLILEYQQDLREE 665
D+ D+ +K + +I N+F+ + + D+ + Q+DL E
Sbjct: 159 KKAKSEGEGEVIDYNDDE---SLAKADRTVIFANVFNIYKSYTNDDIN---DIQEDLLEG 212
Query: 666 CSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF-GQRQITAETWDGKT 722
C + G V + + +G A + FK + A C +++ GR+F GQ+ + + D T
Sbjct: 213 CEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGRYFDGQKLLAFISGDENT 268
Score = 203 (76.5 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 71/251 (28%), Positives = 118/251 (47%)
Query: 199 QKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEE-FVEVMQKCGLVMKDVDTNQMKIKLYT 257
QKR+ E ++ ++T +Y+S LP D T +E E K G++ + D + KLY
Sbjct: 32 QKRELE----YNNASKNTSIYISGLPTDKTTKEGLTEQFCKYGMIRTNRDGEPL-CKLYV 86
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF------TMKGEAYDP 311
+ FKGDAL TY K+ESV LA+ +++ GK+I+VERA+F M G+ D
Sbjct: 87 NDKGA-FKGDALITYSKEESVTLAIEMMNESIFLGKQIRVERAQFQNKEGDNMHGKENDL 145
Query: 312 XXXXXXX--XXXXXXXXXXXXXXXFDWRPDKMRGERSKNESVIIVKNLFD--PALFDKDV 367
D+ D+ +K + +I N+F+ + + D+
Sbjct: 146 KEFNGPEPPIKRLKKAKSEGEGEVIDYNDDE---SLAKADRTVIFANVFNIYKSYTNDDI 202
Query: 368 TLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWF-GQR 426
+ Q+DL E C + G V + + +G A + FK + A C +++ GR+F GQ+
Sbjct: 203 N---DIQEDLLEGCEEIGQVDSISVSPN--KGEATVVFKNNKVALQCCKIMTGRYFDGQK 257
Query: 427 QITAETWDGKT 437
+ + D T
Sbjct: 258 LLAFISGDENT 268
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 104 (41.7 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
+I++N+FDP + + + + ECS G + + L DK+ +G I + E+
Sbjct: 637 LILRNMFDPET-ETEENWDQDILSETHAECSTFGKIMHIYL-DKNTKGCIYIRYDNNESP 694
Query: 697 DACRELLNGRWFGQRQITAETWDGKTRYKIQ 727
+ L+GRWF ++QI AE YK+Q
Sbjct: 695 LKAIQKLHGRWFSKKQIIAELVPEPV-YKLQ 724
Score = 104 (41.7 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 27/91 (29%), Positives = 46/91 (50%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
+I++N+FDP + + + + ECS G + + L DK+ +G I + E+
Sbjct: 637 LILRNMFDPET-ETEENWDQDILSETHAECSTFGKIMHIYL-DKNTKGCIYIRYDNNESP 694
Query: 412 DACRELLNGRWFGQRQITAETWDGKTRYKIQ 442
+ L+GRWF ++QI AE YK+Q
Sbjct: 695 LKAIQKLHGRWFSKKQIIAELVPEPV-YKLQ 724
Score = 101 (40.6 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 36/146 (24%), Positives = 61/146 (41%)
Query: 158 PNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEESTK 217
P T S++ +K S +T+ P PEP D +
Sbjct: 215 PTTSTSSTSSSNTTTNKESSSSSISTS---TPPTSSSTTSSSSTLPEP----DEESDQRT 267
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
V+VS L ++ +++ ++ + G V+ ++L TD TK KG + +KE
Sbjct: 268 VFVSKLSQNIVEKDLSDLFSQAGTVLN--------VRLITDKVTKRMKGVGYVEFSQKEM 319
Query: 278 VDLAL----SILDGYEIRGKKIKVER 299
VD A+ S+LDG +I I+ E+
Sbjct: 320 VDKAIALSGSVLDGQQILVHSIQPEK 345
Score = 86 (35.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
V+VS L ++ +++ ++ + G V+ ++L TD TK KG + +KE
Sbjct: 268 VFVSKLSQNIVEKDLSDLFSQAGTVLN--------VRLITDKVTKRMKGVGYVEFSQKEM 319
Query: 563 VDLAL----SILDGYEIRGKKIKVER 584
VD A+ S+LDG +I I+ E+
Sbjct: 320 VDKAIALSGSVLDGQQILVHSIQPEK 345
Score = 80 (33.2 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/86 (29%), Positives = 44/86 (51%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G ES ++YV + L + +E+ + Q G D+D I ++T P + A
Sbjct: 357 GGES-RIYVGYIHLSVAEEQIRVIFQPYG----DIDF----INIHTKPGISKY---AFIQ 404
Query: 272 YIKKESVDLALSILDGYEIRGKKIKV 297
+ +ES A++ L+GYE+ GK +K+
Sbjct: 405 FKTQESAKRAITELNGYELMGKNLKL 430
Score = 77 (32.2 bits), Expect = 8.7e-11, Sum P(3) = 8.7e-11
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
+++YV + L + +E+ + Q G D+D I ++T P + A + +
Sbjct: 360 SRIYVGYIHLSVAEEQIRVIFQPYG----DIDF----INIHTKPGISKY---AFIQFKTQ 408
Query: 561 ESVDLALSILDGYEIRGKKIKV 582
ES A++ L+GYE+ GK +K+
Sbjct: 409 ESAKRAITELNGYELMGKNLKL 430
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 139 (54.0 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
+++KN+FDPA + + LE + D+ +ECSK G V + + DK+ G + F+ EAA
Sbjct: 437 LLLKNMFDPAT-ETEPNFDLEIRDDVADECSKYGPVNHIYV-DKNSAGFVYLRFQSVEAA 494
Query: 697 DACRELLNGRWFGQRQITA 715
A + ++ RWF Q+ I+A
Sbjct: 495 AAAQRAMHMRWFAQKMISA 513
Score = 139 (54.0 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 29/79 (36%), Positives = 48/79 (60%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
+++KN+FDPA + + LE + D+ +ECSK G V + + DK+ G + F+ EAA
Sbjct: 437 LLLKNMFDPAT-ETEPNFDLEIRDDVADECSKYGPVNHIYV-DKNSAGFVYLRFQSVEAA 494
Query: 412 DACRELLNGRWFGQRQITA 430
A + ++ RWF Q+ I+A
Sbjct: 495 AAAQRAMHMRWFAQKMISA 513
Score = 70 (29.7 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 24/87 (27%), Positives = 42/87 (48%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G K+YV NL ++++ + ++ + G V ++ ++L DP T KG
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPV-------EL-VQLPLDPETGQCKGFGFIQ 312
Query: 272 YIKKESVDLALSILDG-YEIRGKKIKV 297
+++ E A L+G EI G+ IKV
Sbjct: 313 FVQLEHSKAAQIALNGKLEIAGRTIKV 339
Score = 68 (29.0 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 33/138 (23%), Positives = 59/138 (42%)
Query: 162 DEKKPSADLVQSKVEEKSVDATAPMEN-PKAEEKVVPGQKRKPEPPKWFDIGEESTKVYV 220
D KP D + + E++S + E P+ E+ + K + P+ D + V+
Sbjct: 115 DRDKPR-DRERREREKRSSSRSRREEKEPEVVERGSRRHRDKKDEPE-ADPERDQRTVFA 172
Query: 221 SNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDL 280
+PL T+ + E K G V +DV +L D ++ KG + SV +
Sbjct: 173 YQMPLKATERDVYEFFSKAGKV-RDV-------RLIMDRNSRRSKGVGYIEFYDVMSVPM 224
Query: 281 ALSILDGYEIRGKKIKVE 298
A++ L G G+ + V+
Sbjct: 225 AIA-LSGQLFLGQPVMVK 241
Score = 67 (28.6 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+YV NL ++++ + ++ + G V ++ ++L DP T KG +++ E
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPV-------EL-VQLPLDPETGQCKGFGFIQFVQLE 317
Query: 562 SVDLALSILDG-YEIRGKKIKV 582
A L+G EI G+ IKV
Sbjct: 318 HSKAAQIALNGKLEIAGRTIKV 339
Score = 54 (24.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
++ V+ +PL T+ + E K G V +DV +L D ++ KG +
Sbjct: 165 RDQRTVFAYQMPLKATERDVYEFFSKAGKV-RDV-------RLIMDRNSRRSKGVGYIEF 216
Query: 558 IKKESVDLALSILDGYEIRGKKIKVE 583
SV +A++ L G G+ + V+
Sbjct: 217 YDVMSVPMAIA-LSGQLFLGQPVMVK 241
>CGD|CAL0001495 [details] [associations]
symbol:orf19.5767 species:5476 "Candida albicans" [GO:0003723
"RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0001495 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000046 KO:K13093
RefSeq:XP_718102.1 ProteinModelPortal:Q5A8Q7 STRING:Q5A8Q7
GeneID:3640263 KEGG:cal:CaO19.5767 Uniprot:Q5A8Q7
Length = 283
Score = 152 (58.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
++N+ +++SNLP+D E E K G + D + +IK+YT+ FKG+AL Y
Sbjct: 94 KKNSSIFISNLPVDSGFSEIEEAFSKYGKISVGKD-EKPRIKMYTNE-KGSFKGEALIIY 151
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 592
ES LA+ ++D + G I+VE AKF K E
Sbjct: 152 SNPESALLAIEMMDNAQYNGNTIRVEEAKFDNKKE 186
Score = 147 (56.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++++ +++SNLP+D E E K G + D + +IK+YT+ FKG+AL Y
Sbjct: 94 KKNSSIFISNLPVDSGFSEIEEAFSKYGKISVGKD-EKPRIKMYTNE-KGSFKGEALIIY 151
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 307
ES LA+ ++D + G I+VE AKF K E
Sbjct: 152 SNPESALLAIEMMDNAQYNGNTIRVEEAKFDNKKE 186
Score = 66 (28.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/92 (16%), Positives = 43/92 (46%)
Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG--HVKKVV 676
FD + + + ++ +I++N+ D+ + + D++EEC G ++ +V
Sbjct: 181 FDNKKENPKKKQDSLSKAVIIRNMVRKKELANDIHIKQDIIDDIKEECKNIGISDIEDIV 240
Query: 677 LHDKHPEGVAQIFFKEPEAADACRELLNGRWF 708
++++ + F + E+ C + + R++
Sbjct: 241 FNEEN--ATVLVKFSKKESLLLCIKKFHNRYY 270
Score = 66 (28.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 15/92 (16%), Positives = 43/92 (46%)
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG--HVKKVV 391
FD + + + ++ +I++N+ D+ + + D++EEC G ++ +V
Sbjct: 181 FDNKKENPKKKQDSLSKAVIIRNMVRKKELANDIHIKQDIIDDIKEECKNIGISDIEDIV 240
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGRWF 423
++++ + F + E+ C + + R++
Sbjct: 241 FNEEN--ATVLVKFSKKESLLLCIKKFHNRYY 270
>UNIPROTKB|Q5A8Q7 [details] [associations]
symbol:CUS2 "Potential spliceosome factor" species:237561
"Candida albicans SC5314" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0001495 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000046 KO:K13093
RefSeq:XP_718102.1 ProteinModelPortal:Q5A8Q7 STRING:Q5A8Q7
GeneID:3640263 KEGG:cal:CaO19.5767 Uniprot:Q5A8Q7
Length = 283
Score = 152 (58.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
++N+ +++SNLP+D E E K G + D + +IK+YT+ FKG+AL Y
Sbjct: 94 KKNSSIFISNLPVDSGFSEIEEAFSKYGKISVGKD-EKPRIKMYTNE-KGSFKGEALIIY 151
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 592
ES LA+ ++D + G I+VE AKF K E
Sbjct: 152 SNPESALLAIEMMDNAQYNGNTIRVEEAKFDNKKE 186
Score = 147 (56.8 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++++ +++SNLP+D E E K G + D + +IK+YT+ FKG+AL Y
Sbjct: 94 KKNSSIFISNLPVDSGFSEIEEAFSKYGKISVGKD-EKPRIKMYTNE-KGSFKGEALIIY 151
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGE 307
ES LA+ ++D + G I+VE AKF K E
Sbjct: 152 SNPESALLAIEMMDNAQYNGNTIRVEEAKFDNKKE 186
Score = 66 (28.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/92 (16%), Positives = 43/92 (46%)
Query: 619 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG--HVKKVV 676
FD + + + ++ +I++N+ D+ + + D++EEC G ++ +V
Sbjct: 181 FDNKKENPKKKQDSLSKAVIIRNMVRKKELANDIHIKQDIIDDIKEECKNIGISDIEDIV 240
Query: 677 LHDKHPEGVAQIFFKEPEAADACRELLNGRWF 708
++++ + F + E+ C + + R++
Sbjct: 241 FNEEN--ATVLVKFSKKESLLLCIKKFHNRYY 270
Score = 66 (28.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 15/92 (16%), Positives = 43/92 (46%)
Query: 334 FDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCG--HVKKVV 391
FD + + + ++ +I++N+ D+ + + D++EEC G ++ +V
Sbjct: 181 FDNKKENPKKKQDSLSKAVIIRNMVRKKELANDIHIKQDIIDDIKEECKNIGISDIEDIV 240
Query: 392 LHDKHPEGVAQIFFKEPEAADACRELLNGRWF 423
++++ + F + E+ C + + R++
Sbjct: 241 FNEEN--ATVLVKFSKKESLLLCIKKFHNRYY 270
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 125 (49.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 36/101 (35%), Positives = 58/101 (57%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-HDKHPEG---- 684
R + VII++N+ P D D TL Q++++EECSK G V +V++ ++K E
Sbjct: 532 RPVDSRVIILRNMVGPE--DVDETL----QEEIQEECSKFGTVSRVIIFNEKQTENEDDD 585
Query: 685 ----VAQIFFKEPEAADACR--ELLNGRWFGQRQITAETWD 719
+ +IF + A+A R E L+GR+FG R++ AE +D
Sbjct: 586 EAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYD 626
Score = 125 (49.1 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 36/101 (35%), Positives = 58/101 (57%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-HDKHPEG---- 399
R + VII++N+ P D D TL Q++++EECSK G V +V++ ++K E
Sbjct: 532 RPVDSRVIILRNMVGPE--DVDETL----QEEIQEECSKFGTVSRVIIFNEKQTENEDDD 585
Query: 400 ----VAQIFFKEPEAADACR--ELLNGRWFGQRQITAETWD 434
+ +IF + A+A R E L+GR+FG R++ AE +D
Sbjct: 586 EAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRVVAELYD 626
Score = 73 (30.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 20/89 (22%), Positives = 48/89 (53%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL++E+ V + G ++ K+ T +T KG
Sbjct: 223 AKSFNRIYVASIHPDLSEEDIKSVFEAFGPIL------YCKLAQGTSLHTH--KGYGFIE 274
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K+++D A++ ++ +++ G+ ++V R+
Sbjct: 275 YANKQAMDEAIASMNLFDLGGQLLRVGRS 303
Score = 72 (30.4 bits), Expect = 7.9e-07, Sum P(2) = 7.9e-07
Identities = 21/94 (22%), Positives = 51/94 (54%)
Query: 210 DIGEES---TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 266
++ EE+ ++YV+++ DL++E+ V + G ++ K+ T +T KG
Sbjct: 218 EVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGPIL------YCKLAQGTSLHTH--KG 269
Query: 267 DALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
Y K+++D A++ ++ +++ G+ ++V R+
Sbjct: 270 YGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRS 303
Score = 69 (29.3 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 253 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 299
I + DP T+ KG A Y E LAL ++G + G+ IKV R
Sbjct: 159 INMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGR 205
Score = 69 (29.3 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 584
I + DP T+ KG A Y E LAL ++G + G+ IKV R
Sbjct: 159 INMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGR 205
Score = 55 (24.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-----DKHPEGVAQIFFKEPEAADACRELLNGR 421
++ E ++D +R + G +K + + KH +G A + ++ PE A E +NG
Sbjct: 136 SISFELKEDTIRVAFTPFGPIKSINMSWDPITQKH-KGFAFVEYEIPEGAQLALEQMNGA 194
Query: 422 WFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKG--EAYDP 479
G R I + + Q+ +E + K + I + ++ +K EA+ P
Sbjct: 195 LMGGRNI--KVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFGP 252
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 126 (49.4 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 29/98 (29%), Positives = 56/98 (57%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 126 (49.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/98 (29%), Positives = 56/98 (57%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 68 (29.0 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 227 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 278
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 279 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 67 (28.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 283
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 284 SSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 62 (26.9 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 186
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 187 AAQLALEQMNSVMLGGRNIKVGR 209
Score = 62 (26.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 186
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 187 AAQLALEQMNSVMLGGRNIKVGR 209
Score = 56 (24.8 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 140 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 198
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 199 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 229
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 126 (49.4 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 29/98 (29%), Positives = 56/98 (57%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 126 (49.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/98 (29%), Positives = 56/98 (57%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 462 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 515
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWFG R++ AE +D
Sbjct: 516 IIVKIFVEFSMASETHKAIQALNGRWFGGRKVVAEVYD 553
Score = 68 (29.0 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 227 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 278
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 279 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 67 (28.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 283
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 284 SSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 62 (26.9 bits), Expect = 9.9e-09, Sum P(3) = 9.9e-09
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 186
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 187 AAQLALEQMNSVMLGGRNIKVGR 209
Score = 62 (26.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 186
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 187 AAQLALEQMNSVMLGGRNIKVGR 209
Score = 56 (24.8 bits), Expect = 3.9e-08, Sum P(3) = 3.9e-08
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 140 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 198
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 199 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 229
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 120 (47.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 420 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 473
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 474 IIVKIFVEFSMASETHKAIQALNGRWFAGRKVVAEVYD 511
Score = 120 (47.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 420 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 473
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 474 IIVKIFVEFSMASETHKAIQALNGRWFAGRKVVAEVYD 511
Score = 68 (29.0 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 185 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 236
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 237 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 265
Score = 67 (28.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 190 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 241
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 242 SSQDAVSSMNLFDLGGQYLRVGKA 265
Score = 62 (26.9 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 144
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 145 AAQLALEQMNSVMLGGRNIKVGR 167
Score = 62 (26.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 144
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 145 AAQLALEQMNSVMLGGRNIKVGR 167
Score = 56 (24.8 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 98 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 156
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 157 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 187
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAEVYD 519
Score = 120 (47.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQALNGRWFAGRKVVAEVYD 519
Score = 68 (29.0 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 193 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 244
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 245 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 67 (28.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 250 SSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 62 (26.9 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 152
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 153 AAQLALEQMNSVMLGGRNIKVGR 175
Score = 62 (26.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 152
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 153 AAQLALEQMNSVMLGGRNIKVGR 175
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 106 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 164
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 165 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 195
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 120 (47.3 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYD 519
Score = 120 (47.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 428 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 481
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 482 IIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYD 519
Score = 68 (29.0 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 193 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 244
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 245 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 67 (28.6 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 249
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 250 SSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 62 (26.9 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 152
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 153 AAQLALEQMNSVMLGGRNIKVGR 175
Score = 62 (26.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 152
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 153 AAQLALEQMNSVMLGGRNIKVGR 175
Score = 56 (24.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 106 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 164
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 165 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 195
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 119 (46.9 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 441 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 494
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 495 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 532
Score = 119 (46.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 441 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 494
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 495 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 532
Score = 68 (29.0 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 206 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 257
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 258 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 67 (28.6 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 262
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 263 SSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 62 (26.9 bits), Expect = 4.8e-08, Sum P(3) = 4.8e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 165
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 166 AAQLALEQMNSVMLGGRNIKVGR 188
Score = 62 (26.9 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 165
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 166 AAQLALEQMNSVMLGGRNIKVGR 188
Score = 56 (24.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 119 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 177
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 178 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 208
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 119 (46.9 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 457 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 510
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 511 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 548
Score = 119 (46.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 457 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 510
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 511 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 548
Score = 68 (29.0 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 222 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 273
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 274 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 67 (28.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 278
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 279 SSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 62 (26.9 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 181
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 182 AAQLALEQMNSVMLGGRNIKVGR 204
Score = 62 (26.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 181
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 182 AAQLALEQMNSVMLGGRNIKVGR 204
Score = 56 (24.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 135 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 193
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 194 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 224
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 119 (46.9 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 458 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 511
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 512 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 549
Score = 119 (46.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 28/98 (28%), Positives = 55/98 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ DP D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 458 RKQESTVMVLRNMVDPKDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 511
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LNGRWF R++ AE +D
Sbjct: 512 IIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 549
Score = 68 (29.0 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 223 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIE 274
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 275 YEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 67 (28.6 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKS--------CTLARDPTTGKHKGYGFIEYEKAQ 279
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 280 SSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 62 (26.9 bits), Expect = 5.4e-08, Sum P(3) = 5.4e-08
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 182
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 183 AAQLALEQMNSVMLGGRNIKVGR 205
Score = 62 (26.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 182
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 183 AAQLALEQMNSVMLGGRNIKVGR 205
Score = 56 (24.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 136 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 194
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 195 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 225
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 113 (44.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 683
R + +V++++N+ P D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 436 RKQESTVMVLRNMVGPEDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 489
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + A++ + + LN RWFG R++ AE +D
Sbjct: 490 VIVKIFVEFSAASEMNKAIQALNNRWFGGRKVIAEVYD 527
Score = 113 (44.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH------DKHPE 398
R + +V++++N+ P D D+ + ++ EEC K G V +V+++ ++ E
Sbjct: 436 RKQESTVMVLRNMVGPEDIDDDL------EGEVTEECGKFGAVNRVIIYQEKQGEEEDAE 489
Query: 399 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 434
+ +IF + A++ + + LN RWFG R++ AE +D
Sbjct: 490 VIVKIFVEFSAASEMNKAIQALNNRWFGGRKVIAEVYD 527
Score = 70 (29.7 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + L DP T KG
Sbjct: 186 ARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKS--------CSLARDPTTGKHKGYGFIE 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 238 YDKAQSAQDAVSSMNLFDLGGQYLRVGKA 266
Score = 69 (29.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV+++ DL+ ++ V + G + L DP T KG Y K +
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKS--------CSLARDPTTGKHKGYGFIEYDKAQ 242
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
S A+S ++ +++ G+ ++V +A
Sbjct: 243 SAQDAVSSMNLFDLGGQYLRVGKA 266
Score = 61 (26.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTLKHKGFAFVEYEVPE 145
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 146 AAQLALEQMNSVMLGGRNIKVGR 168
Score = 61 (26.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTLKHKGFAFVEYEVPE 145
Query: 562 SVDLALSILDGYEIRGKKIKVER 584
+ LAL ++ + G+ IKV R
Sbjct: 146 AAQLALEQMNSVMLGGRNIKVGR 168
Score = 56 (24.8 bits), Expect = 5.1e-07, Sum P(3) = 5.1e-07
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 99 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKH-KGFAFVEYEVPEAAQLALEQMNSV 157
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I + AEE A
Sbjct: 158 MLGGRNIKVGRPSNIGQAQPIIDQLAEEARA 188
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N D+ E E+ K G + +K+ TDP K KG +
Sbjct: 187 AKEFTNVYIKNFGDDMDDERLKELFSKYG--------KTLSVKVMTDPTGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
+ K E + A+ ++G +I GK + V RA+ ++ +A
Sbjct: 238 FEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Score = 101 (40.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 192 EEKVVPGQ--KRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 249
+ KV G+ RK + +E T VY+ N D+ E E+ K G
Sbjct: 165 DRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYG--------K 216
Query: 250 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 308
+ +K+ TDP K KG ++ K E + A+ ++G +I GK + V RA+ ++ +A
Sbjct: 217 TLSVKVMTDPTGKS-KGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA 274
Score = 71 (30.1 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 625 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHP 682
K R E+ K E + + + L+ K++ ++ + LR+E S G + KV+L D
Sbjct: 277 KRRFEQLKQERISRYQGV---NLYIKNLDDTID-DEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 683 EGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+G + F PE A +NGR G + +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 71 (30.1 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 340 KMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHP 397
K R E+ K E + + + L+ K++ ++ + LR+E S G + KV+L D
Sbjct: 277 KRRFEQLKQERISRYQGV---NLYIKNLDDTID-DEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
+G + F PE A +NGR G + +
Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 63 (27.2 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ +AAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 49 (22.3 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 105 (42.0 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N D+ + E+ K G + +K+ TDP K +G +
Sbjct: 188 AKEFTNVYIKNFGDDMDDQRLKELFDKYG--------KTLSVKVMTDPTGKS-RGFGFVS 238
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G E+ GK + V RA+ M+ +A
Sbjct: 239 YEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Score = 105 (42.0 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 192 EEKVVPGQ--KRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTN 249
+ KV G+ RK + +E T VY+ N D+ + E+ K G
Sbjct: 166 DRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYG--------K 217
Query: 250 QMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 308
+ +K+ TDP K +G +Y K E + A+ ++G E+ GK + V RA+ M+ +A
Sbjct: 218 TLSVKVMTDPTGKS-RGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA 275
Score = 64 (27.6 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L + +G + F PE A +NGR G + +
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Score = 64 (27.6 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 375 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
+ LR+E S G + KV+L + +G + F PE A +NGR G + +
Sbjct: 309 EKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 364
Score = 62 (26.9 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ +AAD E +NG R++ + + + + A+ +
Sbjct: 130 KVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAK 189
Query: 449 E 449
E
Sbjct: 190 E 190
Score = 49 (22.3 bits), Expect = 6.8e-07, Sum P(4) = 6.8e-07
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 14 LYVGDLHPDITEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 65
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ ++GK I++
Sbjct: 66 AERALDTMNFDVVKGKPIRI 85
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 102 (41.0 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 625 KMRGERSKNES-VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 683
K+ G + S +++KN P D ++ D+R C++ G ++K+V+
Sbjct: 936 KLLGSDTTQPSRCLVLKNAGSPDDIDSS------FEDDIRSGCNEFGEIEKLVIKSDSQS 989
Query: 684 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 719
I FK+ + AC+ LNG++F I AE +D
Sbjct: 990 VKVYILFKDLYSGMACQSKLNGKYFSYHCIKAEFYD 1025
Score = 102 (41.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 340 KMRGERSKNES-VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
K+ G + S +++KN P D ++ D+R C++ G ++K+V+
Sbjct: 936 KLLGSDTTQPSRCLVLKNAGSPDDIDSS------FEDDIRSGCNEFGEIEKLVIKSDSQS 989
Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAETWD 434
I FK+ + AC+ LNG++F I AE +D
Sbjct: 990 VKVYILFKDLYSGMACQSKLNGKYFSYHCIKAEFYD 1025
Score = 80 (33.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 26/118 (22%), Positives = 56/118 (47%)
Query: 187 ENPKAEEKVVPGQKRKPEPPKWFDIG-----EESTKVYVSNLPLDLTQEEFVEVMQKCGL 241
++P + P Q P+ PK + E++++Y+ ++ ++T+++ + + G
Sbjct: 735 QHPILSQSHHPPQHPTPDVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGR 794
Query: 242 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVER 299
V+ L + T KG + K+S D A++ ++G+E+ G+ IKV R
Sbjct: 795 VISCF--------LMQNADTGKHKGFGFVDFELKKSADDAIATMNGFELLGRSIKVGR 844
Score = 74 (31.1 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
Identities = 20/86 (23%), Positives = 44/86 (51%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
E +++Y+ ++ ++T+++ + + G V+ L + T KG +
Sbjct: 767 EASRIYIGSINWNVTEDQVRSIFSQFGRVISCF--------LMQNADTGKHKGFGFVDFE 818
Query: 559 KKESVDLALSILDGYEIRGKKIKVER 584
K+S D A++ ++G+E+ G+ IKV R
Sbjct: 819 LKKSADDAIATMNGFELLGRSIKVGR 844
Score = 71 (30.1 bits), Expect = 9.6e-07, Sum P(3) = 9.6e-07
Identities = 31/113 (27%), Positives = 45/113 (39%)
Query: 195 VVPGQKRKPEPPKWFD-IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
+ P P PP ++ +++YV +L LT++ G N +
Sbjct: 566 IQPTTTTTPIPPTLNQSTSQDQSRIYVGSLHFSLTEDVIRATFSVFG--------NIKSL 617
Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKG 306
L D K KG A Y +ES AL + Y + G+ IKV R FT G
Sbjct: 618 ALGKDASGKS-KGYAFIEYDNQESAAKALQSMTNYVMCGRAIKVARP-FTGTG 668
Score = 41 (19.5 bits), Expect = 0.00088, Sum P(3) = 0.00088
Identities = 13/69 (18%), Positives = 27/69 (39%)
Query: 156 EQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKWFDIGEES 215
E NT + P+ K E + + + P+ V+ +PP +
Sbjct: 493 ENKNTTLQASPTITTFTVKPSENPISSPSSQFKPQIGAPVIQTATPLQQPPH--QLHHHQ 550
Query: 216 TKVYVSNLP 224
T+++ S++P
Sbjct: 551 TQIF-SSIP 558
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPSGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 94 (38.1 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDENLKELFSQFG--------KTLSVKVMRDPSGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 66 (28.3 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 94 (38.1 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDENLKELFSQFG--------KTLSVKVMRDPSGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 93 (37.8 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 66 (28.3 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 1.4e-06, Sum P(4) = 1.4e-06
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 66 (28.3 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 96 (38.9 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 638 IVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAAD 697
I+ N+FDP + + T +E + D+ EEC+K G V + H ++ K P
Sbjct: 487 ILSNMFDPRT-ETNPTWDVEIRDDVLEECAKHGGVLHI--HVDTISHTGTVYVKCPSTTT 543
Query: 698 ACREL--LNGRWFGQRQITA 715
A + L+GRWF R ITA
Sbjct: 544 AVLAVNALHGRWFAGRVITA 563
Score = 96 (38.9 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 27/80 (33%), Positives = 40/80 (50%)
Query: 353 IVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAAD 412
I+ N+FDP + + T +E + D+ EEC+K G V + H ++ K P
Sbjct: 487 ILSNMFDPRT-ETNPTWDVEIRDDVLEECAKHGGVLHI--HVDTISHTGTVYVKCPSTTT 543
Query: 413 ACREL--LNGRWFGQRQITA 430
A + L+GRWF R ITA
Sbjct: 544 AVLAVNALHGRWFAGRVITA 563
Score = 72 (30.4 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
++YV +L ++T++ + + G +D I+L D T KG TY +
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFG----KIDA----IQLIMDTETGRSKGYGFITYHNAD 387
Query: 562 SVDLALSILDGYEIRGKKIKV 582
AL L+G+E+ G+ +KV
Sbjct: 388 DAKKALEQLNGFELAGRLMKV 408
Score = 72 (30.4 bits), Expect = 0.00082, Sum P(2) = 0.00082
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G +D I+L D T KG TY +
Sbjct: 336 RLYVGSLHFNITEDMLRGIFEPFG----KIDA----IQLIMDTETGRSKGYGFITYHNAD 387
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 388 DAKKALEQLNGFELAGRLMKV 408
Score = 63 (27.2 bits), Expect = 6.1e-06, Sum P(3) = 6.1e-06
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 253 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
++L T TK FKG A + ESV LAL L G + G I V+ +
Sbjct: 266 VRLITCNKTKRFKGIAYIEFDDPESVALALG-LSGQRLLGVPIMVQHTQ 313
Score = 52 (23.4 bits), Expect = 7.4e-05, Sum P(3) = 7.4e-05
Identities = 23/90 (25%), Positives = 36/90 (40%)
Query: 375 QDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430
+DL E S G V+ V L K +G+A I F +PE+ L R G +
Sbjct: 251 RDLEEFFSSVGKVRDVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQ 310
Query: 431 ETWDGKTRYKIQETAEEREARLKKWETFLG 460
T K R + A + ++ ++G
Sbjct: 311 HTQAEKNRLQNAAPAFQPKSHTGPMRLYVG 340
>WB|WBGene00006697 [details] [associations]
symbol:uaf-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0009790 "embryo
development" evidence=IMP] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0030628 "pre-mRNA 3'-splice site binding"
evidence=IDA] [GO:0048589 "developmental growth" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0048589 GO:GO:0010172 GO:GO:0000398
GO:GO:0040020 GO:GO:0040022 EMBL:FO080242
GeneTree:ENSGT00690000102089 GO:GO:0030628 eggNOG:NOG298004
HOGENOM:HOG000180745 KO:K12837 TIGRFAMs:TIGR01642 EMBL:U79157
RefSeq:NP_001022967.1 RefSeq:NP_001022969.1 RefSeq:NP_497326.2
UniGene:Cel.18058 ProteinModelPortal:P90978 SMR:P90978
IntAct:P90978 MINT:MINT-1062639 STRING:P90978 PaxDb:P90978
PRIDE:P90978 EnsemblMetazoa:Y92C3B.2a GeneID:175270
KEGG:cel:CELE_Y92C3B.2 UCSC:Y92C3B.2b.1 CTD:175270
WormBase:Y92C3B.2a WormBase:Y92C3B.2b WormBase:Y92C3B.2c
InParanoid:P90978 OMA:TDGSTRA NextBio:887470 ArrayExpress:P90978
Uniprot:P90978
Length = 496
Score = 87 (35.7 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 657 EYQQDLREECSKCGHVKKVVL---HDKHP-EGVAQIFFKEPEAADACRE--LLNGRWFGQ 710
E +D+R+ECSK G V+ + + ++ HP GV ++F + +D R L GR F
Sbjct: 419 EILEDVRDECSKYGIVRSLEIPRPYEDHPVPGVGKVFVEFASTSDCQRAQAALTGRKFAN 478
Query: 711 RQITAETWD 719
R + +D
Sbjct: 479 RTVVTSYYD 487
Score = 72 (30.4 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 34/129 (26%), Positives = 54/129 (41%)
Query: 181 DATAPME--NPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEE----FVE 234
+ T PME N +A +V G + P + +S ++YV N+P +E F +
Sbjct: 147 ETTTPMEYKNMQAAGQVPRGSVQSAVPVVGPSVTCQSRRLYVGNIPFGCNEEAMLDFFNQ 206
Query: 235 VMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVD--LALSILDGYEIRG 292
M CGL + I L K+F +I+ S+D A DG G
Sbjct: 207 QMHLCGLAQAPGNP----ILLCQINLDKNF------AFIEFRSIDETTAGMAFDGINFMG 256
Query: 293 KKIKVERAK 301
+++KV R +
Sbjct: 257 QQLKVRRPR 265
Score = 68 (29.0 bits), Expect = 9.2e-06, Sum P(3) = 9.2e-06
Identities = 28/128 (21%), Positives = 51/128 (39%)
Query: 458 FLGKKIKVERAKFTMKGEAYDPXXXXXXXXXXXXXXXXXAQENTKVYVSNLPLDLTQEEF 517
F+G+++KV R + Y P K+++ LP LT+++
Sbjct: 254 FMGQQLKVRRPR------DYQPSQNTFDMNSRMPVSTIVVDSANKIFIGGLPNYLTEDQV 307
Query: 518 VEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRG 577
E++ G +K N D KG A Y+ D A++ L+G ++
Sbjct: 308 KELLCSFG-PLKAFSLN-------VDSQGNS-KGYAFAEYLDPTLTDQAIAGLNGMQLGD 358
Query: 578 KKIKVERA 585
K++ V+ A
Sbjct: 359 KQLVVQLA 366
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 103 (41.3 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 27/98 (27%), Positives = 54/98 (55%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP------E 683
+SK+ +V++++N+ P D D+ + ++ EEC K G V +V+++ + E
Sbjct: 415 QSKS-TVMVLRNMVGPEDIDDDL------EGEVMEECGKYGAVNRVIIYQERQGEEDDAE 467
Query: 684 GVAQIFFKEPEAADACREL--LNGRWFGQRQITAETWD 719
+ +IF + +A + + + LN RWF R++ AE +D
Sbjct: 468 IIVKIFVEFSDAGEMNKAIQALNNRWFAGRKVVAELYD 505
Score = 62 (26.9 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+VYV ++ +L ++ + G + K +D + D T KG A Y E
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPI-KSIDMSW-------DSVTMKHKGFAFVEYEVPE 138
Query: 277 SVDLALSILDGYEIRGKKIKVER 299
+ LAL ++ + G+ IKV R
Sbjct: 139 AAQLALEQMNSVMLGGRNIKVGR 161
Score = 61 (26.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 20/89 (22%), Positives = 44/89 (49%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+ ++YV+++ DL+ ++ V + G + + L +P T KG
Sbjct: 179 ARAYNRIYVASIHPDLSDDDIKSVFEAFGKIKSCM--------LAREPTTGKHKGFGFIE 230
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERA 585
Y K +S A+S ++ +++ G+ ++V +A
Sbjct: 231 YEKPQSSLDAVSSMNLFDLGGQYLRVGKA 259
Score = 57 (25.1 bits), Expect = 3.2e-05, Sum P(3) = 3.2e-05
Identities = 25/91 (27%), Positives = 43/91 (47%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-D----KHPEGVAQIFFKEPEAADACRELLNGR 421
++ E +D +R+ + G +K + + D KH +G A + ++ PEAA E +N
Sbjct: 92 SIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKH-KGFAFVEYEVPEAAQLALEQMNSV 150
Query: 422 WFGQRQITAETWD--GKTRYKIQETAEEREA 450
G R I G+ + I++ AEE A
Sbjct: 151 MLGGRNIKVGRPGSIGQAQPIIEQLAEEARA 181
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 93 (37.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 89 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVS 139
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 140 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 176
Score = 68 (29.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 210 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 265
Score = 66 (28.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 31 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 81
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 82 EAELGAKAKEFTNVYIK 98
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 111 (44.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 639 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 696
+ N+F+P + D +E Q D+ EEC+K G V + + K EG ++ K P AA
Sbjct: 421 LSNMFNPNS-ENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEG--NVYVKCPTIPAA 477
Query: 697 DACRELLNGRWFGQRQITA 715
A L+GRWFG + ITA
Sbjct: 478 MAAVSALHGRWFGGKMITA 496
Score = 111 (44.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 30/79 (37%), Positives = 43/79 (54%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P + D +E Q D+ EEC+K G V + + K EG ++ K P AA
Sbjct: 421 LSNMFNPNS-ENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEG--NVYVKCPTIPAA 477
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWFG + ITA
Sbjct: 478 MAAVSALHGRWFGGKMITA 496
Score = 71 (30.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
++YV +L ++T++ + + G + D+ I+L D T KG T+ E
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRI----DS----IQLMMDSETGRSKGYGFITFSDAE 298
Query: 562 SVDLALSILDGYEIRGKKIKV 582
AL L+G+E+ G+ +KV
Sbjct: 299 CAKKALEQLNGFELAGRPMKV 319
Score = 71 (30.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 22/81 (27%), Positives = 40/81 (49%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + D+ I+L D T KG T+ E
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRI----DS----IQLMMDSETGRSKGYGFITFSDAE 298
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 299 CAKKALEQLNGFELAGRPMKV 319
Score = 42 (19.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 428 ITAETWDGKTRYKIQETAEEREARLKKWETFLGK----KIKVERAKFTMKGEAY 477
+T E D +T + +Q A R L+++ + +GK +I +R KG AY
Sbjct: 141 LTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRIISDRNSRRSKGIAY 194
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 227 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPSGKS-KGFGFVS 277
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 278 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA 314
Score = 68 (29.0 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 348 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 403
Score = 66 (28.3 bits), Expect = 2.2e-05, Sum P(3) = 2.2e-05
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAAD E +NG R++ G R+K + +ER
Sbjct: 169 KVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 219
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 220 EAELGAKAKEFTNVYIK 236
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 83 (34.3 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A E T VY+ N D+ E +V K G + +K+ TD K KG +
Sbjct: 186 ASEFTNVYIKNFGGDMDDERLKDVFSKYG--------KTLSVKVMTDSSGKS-KGFGFVS 236
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
+ E+ A+ ++G +I G+ I V RA+ ++ +A
Sbjct: 237 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 273
Score = 64 (27.6 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 660 QDLREECSKCGHVKKV-VLHDK-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
+ LR E S G + +V V+ ++ +G I F PE A +NGR G + ++
Sbjct: 307 EKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 363
Score = 58 (25.5 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 362 LFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLN 419
+F K++ ++ + L E S G + KV+ D+ +G A + F+ AAD E +N
Sbjct: 100 VFIKNLDKSID-NKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
Query: 420 GR 421
G+
Sbjct: 159 GK 160
Score = 49 (22.3 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T++ G V+ I++ D T+ G A +++
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLS--------IRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 278 VDLALSILDGYEIRGKKIKV 297
AL ++ I+GK I++
Sbjct: 64 AQKALDTMNFDIIKGKSIRL 83
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 98 (39.6 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 186 MENPKAEE-KVVPGQKRKPEPPKWFDIGEESTKVYVSNL--PL-DLTQEEFVEVMQKCGL 241
+++ +AE+ + K +P P DI K+Y+ L PL ++T++E ++ G
Sbjct: 560 IQSSQAEKNRAAKAAKHQPIDPN--DI---PLKLYIGGLLGPLSNITEQELKQLFNPFG- 613
Query: 242 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
D+ + ++++ DPYT KG + K AL++++G E+ G++IKV A+
Sbjct: 614 ---DI----LDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 93 (37.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 352 IIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
+++ N+F + D + +D++EECSK G V + L K+ +G I + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 410 AADACRELLNGRWFGQRQITA-----ETWD 434
+ + LNGR+FG I A + WD
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 93 (37.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 637 IIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 694
+++ N+F + D + +D++EECSK G V + L K+ +G I + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 695 AADACRELLNGRWFGQRQITA-----ETWD 719
+ + LNGR+FG I A + WD
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 93 (37.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 502 KVYVSNL--PL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
K+Y+ L PL ++T++E ++ G D+ + ++++ DPYT KG +
Sbjct: 587 KLYIGGLLGPLSNITEQELKQLFNPFG----DI----LDVEIHRDPYTGKSKGFGFIQFH 638
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
K AL++++G E+ G++IKV A+
Sbjct: 639 KASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 28/115 (24%), Positives = 41/115 (35%)
Query: 98 PIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQ 157
P + D K + H S + I K N+ K DDD S EQ
Sbjct: 161 PKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQ 220
Query: 158 PN------TVDEKKPSADLVQSKVEEK---SVDAT-APMENPKAEEKVVPGQKRK 202
D KK + SKV+++ S D +N +EE+ +K+K
Sbjct: 221 KRKEQLLENKDNKKEGKNTNSSKVKKRYHTSSDENDRNNDNTSSEEERTKSRKKK 275
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 98 (39.6 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 186 MENPKAEE-KVVPGQKRKPEPPKWFDIGEESTKVYVSNL--PL-DLTQEEFVEVMQKCGL 241
+++ +AE+ + K +P P DI K+Y+ L PL ++T++E ++ G
Sbjct: 560 IQSSQAEKNRAAKAAKHQPIDPN--DI---PLKLYIGGLLGPLSNITEQELKQLFNPFG- 613
Query: 242 VMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
D+ + ++++ DPYT KG + K AL++++G E+ G++IKV A+
Sbjct: 614 ---DI----LDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 93 (37.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 352 IIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
+++ N+F + D + +D++EECSK G V + L K+ +G I + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 410 AADACRELLNGRWFGQRQITA-----ETWD 434
+ + LNGR+FG I A + WD
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 93 (37.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 637 IIVKNLF--DPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 694
+++ N+F + D + +D++EECSK G V + L K+ +G I + +
Sbjct: 769 LVLSNMFSSNDENIGSDPDFFNDILEDVKEECSKYGKVVNIWLDTKNIDGKIYIKYSNND 828
Query: 695 AADACRELLNGRWFGQRQITA-----ETWD 719
+ + LNGR+FG I A + WD
Sbjct: 829 ESLKSFQFLNGRYFGGSLINAYFISNDVWD 858
Score = 93 (37.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 25/88 (28%), Positives = 48/88 (54%)
Query: 502 KVYVSNL--PL-DLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
K+Y+ L PL ++T++E ++ G D+ + ++++ DPYT KG +
Sbjct: 587 KLYIGGLLGPLSNITEQELKQLFNPFG----DI----LDVEIHRDPYTGKSKGFGFIQFH 638
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
K AL++++G E+ G++IKV A+
Sbjct: 639 KASEAIEALTVMNGMEVAGREIKVGYAQ 666
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 28/115 (24%), Positives = 41/115 (35%)
Query: 98 PIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDDFLARYQMSYGFIEQ 157
P + D K + H S + I K N+ K DDD S EQ
Sbjct: 161 PKNKADTLKEESDVSDNHHNNRKSKNIKNSIRSKSSNSKTKKEDDDNNIHCNNSSQENEQ 220
Query: 158 PN------TVDEKKPSADLVQSKVEEK---SVDAT-APMENPKAEEKVVPGQKRK 202
D KK + SKV+++ S D +N +EE+ +K+K
Sbjct: 221 KRKEQLLENKDNKKEGKNTNSSKVKKRYHTSSDENDRNNDNTSSEEERTKSRKKK 275
>WB|WBGene00004389 [details] [associations]
symbol:rnp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0007411 "axon guidance"
evidence=IMP] [GO:0007413 "axonal fasciculation" evidence=IMP]
[GO:0018991 "oviposition" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002009 GO:GO:0006898
GO:GO:0018991 GO:GO:0040010 GO:GO:0007411 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0007413 GO:GO:0040020
GO:GO:0040022 HSSP:Q9V535 EMBL:FO081580
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
InterPro:IPR006532 TIGRFAMs:TIGR01645 KO:K12838 GeneID:171922
KEGG:cel:CELE_Y47G6A.20 UCSC:Y47G6A.20b CTD:171922 NextBio:873257
RefSeq:NP_491176.1 ProteinModelPortal:Q9N3S4 SMR:Q9N3S4
STRING:Q9N3S4 PRIDE:Q9N3S4 EnsemblMetazoa:Y47G6A.20b
WormBase:Y47G6A.20b InParanoid:Q9N3S4 OMA:RFFGGNT
ArrayExpress:Q9N3S4 Uniprot:Q9N3S4
Length = 749
Score = 123 (48.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 689
R+ +VI+++N+ P +D+ LE ++REEC K G+V VV+ + G+ +IF
Sbjct: 653 RTNRSNVIVLRNMVTP----QDIDEFLE--GEIREECGKYGNVIDVVIANFASSGLVKIF 706
Query: 690 FKEPEA--ADACRELLNGRWFGQRQITAETWD 719
K ++ D + L+GR+FG + AE +D
Sbjct: 707 VKYSDSMQVDRAKAALDGRFFGGNTVKAEAYD 738
Score = 123 (48.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 30/92 (32%), Positives = 52/92 (56%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 404
R+ +VI+++N+ P +D+ LE ++REEC K G+V VV+ + G+ +IF
Sbjct: 653 RTNRSNVIVLRNMVTP----QDIDEFLE--GEIREECGKYGNVIDVVIANFASSGLVKIF 706
Query: 405 FKEPEA--ADACRELLNGRWFGQRQITAETWD 434
K ++ D + L+GR+FG + AE +D
Sbjct: 707 VKYSDSMQVDRAKAALDGRFFGGNTVKAEAYD 738
Score = 55 (24.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 368 TLILEYQQD-LREECSKCGHVKKVVLH-DK---HPEGVAQIFFKEPEAADACRELLNGRW 422
++ E ++D LR G +K + + D H + A + ++ PEAA +E +NG+
Sbjct: 108 SISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQM 167
Query: 423 FGQRQI 428
G R +
Sbjct: 168 LGGRNL 173
Score = 51 (23.0 bits), Expect = 0.00011, Sum P(4) = 0.00011
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 253 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 302
I + DP T K A Y E+ LA ++G + G+ +KV F
Sbjct: 131 INMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMF 180
Score = 51 (23.0 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 538 IKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKF 587
I + DP T K A Y E+ LA ++G + G+ +KV F
Sbjct: 131 INMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVNSMMF 180
Score = 47 (21.6 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 529
A++ +VYVS++ DL++ + V + G ++K
Sbjct: 203 AKKYFRVYVSSVHPDLSETDLKSVFEAFGEIVK 235
Score = 46 (21.3 bits), Expect = 0.00098, Sum P(4) = 0.00098
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 185 PMENPKAEEKVVPGQKRKP 203
PME + EE +P +K KP
Sbjct: 392 PMEIEEEEEYTIPEEKPKP 410
Score = 42 (19.8 bits), Expect = 0.00014, Sum P(4) = 0.00014
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 436 KTRYKIQETAEEREARLKKWETFLGKKIKVER 467
K KI+E E R R+K T KK+K E+
Sbjct: 452 KIEEKIEEEEEARTERVKL-STSQRKKMKREK 482
Score = 41 (19.5 bits), Expect = 0.00017, Sum P(4) = 0.00017
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 440 KIQETAEERE-ARLKKWETFLGKKIKVERAK 469
KI+E EE E AR ++ + ++ K++R K
Sbjct: 452 KIEEKIEEEEEARTERVKLSTSQRKKMKREK 482
Score = 38 (18.4 bits), Expect = 4.6e-05, Sum P(4) = 4.6e-05
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 552 DALCTYIKKESVDLALSILDGYEIRG 577
DAL + S D +L+ +G EIRG
Sbjct: 616 DALKNEVMN-SEDASLASQEGLEIRG 640
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 83 (34.3 bits), Expect = 5.2e-05, Sum P(4) = 5.2e-05
Identities = 27/97 (27%), Positives = 45/97 (46%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A E T VY+ N D+ E +V K G + +K+ TD K KG +
Sbjct: 244 ASEFTNVYIKNFGGDMDDERLKDVFSKYG--------KTLSVKVMTDSSGKS-KGFGFVS 294
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
+ E+ A+ ++G +I G+ I V RA+ ++ +A
Sbjct: 295 FDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331
Score = 64 (27.6 bits), Expect = 5.2e-05, Sum P(4) = 5.2e-05
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 660 QDLREECSKCGHVKKV-VLHDK-HPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
+ LR E S G + +V V+ ++ +G I F PE A +NGR G + ++
Sbjct: 365 EKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLS 421
Score = 58 (25.5 bits), Expect = 5.2e-05, Sum P(4) = 5.2e-05
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 362 LFDKDVTLILEYQQDLREECSKCGHV--KKVVLHDKHPEGVAQIFFKEPEAADACRELLN 419
+F K++ ++ + L E S G + KV+ D+ +G A + F+ AAD E +N
Sbjct: 158 VFIKNLDKSID-NKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 216
Query: 420 GR 421
G+
Sbjct: 217 GK 218
Score = 49 (22.3 bits), Expect = 5.2e-05, Sum P(4) = 5.2e-05
Identities = 18/80 (22%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T++ G V+ I++ D T+ G A +++
Sbjct: 70 LYVGDLHADVTEDLLFRKFSTVGPVLS--------IRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 278 VDLALSILDGYEIRGKKIKV 297
AL ++ I+GK I++
Sbjct: 122 AQKALDTMNFDIIKGKSIRL 141
>UNIPROTKB|H7BY36 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS50102 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC002059 EMBL:AL031186 EMBL:AC000026
HGNC:HGNC:3508 ChiTaRS:EWSR1 ProteinModelPortal:H7BY36 PRIDE:H7BY36
Ensembl:ENST00000360091 Uniprot:H7BY36
Length = 308
Score = 127 (49.8 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T
Sbjct: 6 PPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 65
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 66 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 102
Score = 126 (49.4 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 15 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 74
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 75 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 102
>RGD|1307258 [details] [associations]
symbol:Ewsr1 "Ewing sarcoma breakpoint region 1" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] [GO:0015030 "Cajal body"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0005737 GO:GO:0005730 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0015030 HOGENOM:HOG000038010
OrthoDB:EOG42NJ15 IPI:IPI00364603 EMBL:BC098822 UniGene:Rn.52785
ProteinModelPortal:Q4KM41 SMR:Q4KM41 STRING:Q4KM41 PRIDE:Q4KM41
UCSC:RGD:1307258 InParanoid:Q4KM41 NextBio:630274
ArrayExpress:Q4KM41 Genevestigator:Q4KM41 Uniprot:Q4KM41
Length = 317
Score = 127 (49.8 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 20 DNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 79
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 80 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 107
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 16 DEDSDNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 75
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 76 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 107
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 82 (33.9 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ D K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDENLRELFSQFG--------KTLSVKVMRDCSGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G E+ GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 61 (26.5 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAA+ E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 6.7e-05, Sum P(4) = 6.7e-05
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>FB|FBgn0032620 [details] [associations]
symbol:CG12288 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005875 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 HSSP:P52298
EMBL:AY118842 ProteinModelPortal:Q8MSG1 SMR:Q8MSG1 STRING:Q8MSG1
PaxDb:Q8MSG1 PRIDE:Q8MSG1 FlyBase:FBgn0032620 InParanoid:Q8MSG1
OrthoDB:EOG40P2PK ArrayExpress:Q8MSG1 Bgee:Q8MSG1 Uniprot:Q8MSG1
Length = 435
Score = 97 (39.2 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 46/159 (28%), Positives = 76/159 (47%)
Query: 165 KPSADL-VQSKVEEKS-VD---ATAPMENPKAE--EKVVPGQKRKPEP--PKWFDIGEES 215
+P A + V+SK +K V+ TAP E PK + +K K E + + EE+
Sbjct: 95 EPEAQVKVESKATKKEKVEKEPTTAPNEKPKGKVSKKAKANANNKDEEGVKRIRNPAEEA 154
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+ V+V NLP++ + + V++ Q GLV + T K +L+ K G +L Y+
Sbjct: 155 STVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGK-QLFKHKQRK-VAG-SLNAYVV 211
Query: 275 KESVDLALSIL--DGYEIRGKKIKVERAKFTMK-GEAYD 310
E ++A L +G E + ++V A K G+A D
Sbjct: 212 LEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKD 250
Score = 78 (32.5 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 28/111 (25%), Positives = 46/111 (41%)
Query: 659 QQDLREECSKCGHVKKV-VLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 715
++ LRE S CG + + L D K +GVA + F++P+A EL N R I
Sbjct: 273 EEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALEL-NQTLLDDRPINV 331
Query: 716 ETWDGKTRYKIQETAEEREARLKKWETFLXXXXXXXXXAGKGSIDEKESKE 766
E + K + ++ + A + K +D+K+ KE
Sbjct: 332 ERYQVK-KLGAKQVRDAAAASAASKTSSKTKAKNQNSAGAKKRLDKKKGKE 381
Score = 74 (31.1 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMK-DVDTNQMKIKLYTDPYTKDFKGDALC 555
A+E + V+V NLP++ + + V++ Q GLV + T K +L+ K G +L
Sbjct: 151 AEEASTVFVGNLPINTKRVQLVKLFQPYGLVQSIRLRTAGGK-QLFKHKQRK-VAG-SLN 207
Query: 556 TYIKKESVDLALSIL--DGYEIRGKKIKVERAKFTMK-GEAYD 595
Y+ E ++A L +G E + ++V A K G+A D
Sbjct: 208 AYVVLEKPEIAQQALALNGSEFKENHLRVTPASMAEKFGQAKD 250
Score = 72 (30.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 374 QQDLREECSKCGHVKKV-VLHD--KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430
++ LRE S CG + + L D K +GVA + F++P+A EL N R I
Sbjct: 273 EEQLREIFSSCGEIDYIRCLQDGDKGCKGVAYVCFQKPDAVGLALEL-NQTLLDDRPINV 331
Query: 431 ETWDGK 436
E + K
Sbjct: 332 ERYQVK 337
Score = 57 (25.1 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 32/141 (22%), Positives = 60/141 (42%)
Query: 172 QSKVEEKSVDATAPMENPKAEE-KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQE 230
++K EK+ E E+ KV K KP+ K + ++ K V P L+ +
Sbjct: 5 KAKESEKAELKPIKKEPGVVEDGKVTKKSKTKPKK-KTVKVPKDEVKAAVQESPKKLSAK 63
Query: 231 EFVEVMQKCGLVM-KDVDTNQMKI---KLYTDPYTKDFKGDALCTYIKKESVDLALSILD 286
+ ++ +K + + Q K+ ++ T+P + K ++ T KKE V+ +
Sbjct: 64 DLAKIKKKKAKKQAQKLKKQQNKLAPKEIKTEPEAQ-VKVESKAT--KKEKVEKEPTTAP 120
Query: 287 GYEIRGKKIKVERAKFTMKGE 307
+ +GK K +A K E
Sbjct: 121 NEKPKGKVSKKAKANANNKDE 141
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 82 (33.9 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ D K KG +
Sbjct: 187 AKEFTNVYIKNFGEEVDDENLRELFSQFG--------KTLSVKVMRDCSGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G E+ GK I V RA+ ++ +A
Sbjct: 238 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 274
Score = 68 (29.0 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 308 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 61 (26.5 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAA+ E +NG R++ G R+K + +ER
Sbjct: 129 KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 179
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 180 EAELGAKAKEFTNVYIK 196
Score = 50 (22.7 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G V+ I++ D T+ G A + +
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLS--------IRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK I++
Sbjct: 65 AERALDTMNFDVIKGKPIRI 84
>UNIPROTKB|C9JGE3 [details] [associations]
symbol:EWSR1 "Ewing sarcoma breakpoint region 1, isoform
CRA_e" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0000166
EMBL:CH471095 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC002059 EMBL:AL031186 EMBL:AC000026
UniGene:Hs.374477 HGNC:HGNC:3508 HOGENOM:HOG000038010 ChiTaRS:EWSR1
IPI:IPI00953325 SMR:C9JGE3 STRING:C9JGE3 Ensembl:ENST00000332050
UCSC:uc003aez.3 Uniprot:C9JGE3
Length = 583
Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
Identities = 37/154 (24%), Positives = 72/154 (46%)
Query: 149 QMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVP-GQKRKPEPPK 207
Q SYG Q ++ ++ P++ Q+ ++ + + +++ + G PP
Sbjct: 223 QSSYG---QQSSYGQQPPTSYPPQTGSYSQAPSQYSQQSSSYGQQRPMDEGPDLDLGPPV 279
Query: 208 WFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 267
D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T KGD
Sbjct: 280 DPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 339
Query: 268 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
A +Y + A+ DG + +G K+KV A+
Sbjct: 340 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 373
Score = 126 (49.4 bits), Expect = 0.00021, P = 0.00021
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 286 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 345
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 346 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 373
>UNIPROTKB|F1RFI8 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005634
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063105 OMA:EGTSTGY EMBL:CU640468
EMBL:CT737304 Ensembl:ENSSSCT00000010930 Uniprot:F1RFI8
Length = 606
Score = 128 (50.1 bits), Expect = 0.00013, P = 0.00013
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L ++T ++ + ++CG+V + T Q I +Y D T
Sbjct: 299 PPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 358
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 359 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 395
Score = 127 (49.8 bits), Expect = 0.00017, P = 0.00017
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 308 DNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 367
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 368 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 395
>UNIPROTKB|J9P7G2 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 EMBL:AAEX03026610
Ensembl:ENSCAFT00000027552 OMA:FGGRWGP Uniprot:J9P7G2
Length = 650
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D ++ +YV L ++T ++ ++ ++CG+V + T Q I +Y D T
Sbjct: 350 PPVDPDEDSDNNAIYVQGLNDNVTLDDVADLFKQCGIVKMNKRTGQPMIHIYLDKETGKP 409
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 410 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAQ 446
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N +YV L ++T ++ ++ ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 359 DNNAIYVQGLNDNVTLDDVADLFKQCGIVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 419 DPPTAKAAVEWFDGKDFQGSKLKVSLAQ 446
>UNIPROTKB|E2RA07 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 OMA:EGTSTGY
EMBL:AAEX03014786 EMBL:AAEX03014787 Ensembl:ENSCAFT00000019384
Uniprot:E2RA07
Length = 671
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L ++T ++ + ++CG+V + T Q I +Y D T
Sbjct: 365 PPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 424
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 425 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 461
Score = 127 (49.8 bits), Expect = 0.00020, P = 0.00020
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 374 DNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 433
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 434 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 461
>UNIPROTKB|D4A458 [details] [associations]
symbol:Ewsr1 "Protein Ewsr1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 IPI:IPI00767290 Ensembl:ENSRNOT00000057377
ArrayExpress:D4A458 Uniprot:D4A458
Length = 618
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 321 DNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 380
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 381 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 408
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 317 DEDSDNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 376
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 377 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 408
>UNIPROTKB|E2RA46 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 EMBL:AAEX03014786
EMBL:AAEX03014787 Ensembl:ENSCAFT00000019364 Uniprot:E2RA46
Length = 619
Score = 127 (49.8 bits), Expect = 0.00018, P = 0.00018
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 322 DNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 381
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 382 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 409
Score = 124 (48.7 bits), Expect = 0.00037, P = 0.00037
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 318 DEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 377
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 378 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 409
>MGI|MGI:99960 [details] [associations]
symbol:Ewsr1 "Ewing sarcoma breakpoint region 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0015030 "Cajal body" evidence=ISO] [GO:0016020 "membrane"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50096
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
MGI:MGI:99960 GO:GO:0005886 GO:GO:0005634 GO:GO:0005737
GO:GO:0006355 GO:GO:0000166 GO:GO:0046872 EMBL:CH466574
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:NOG240581 GeneTree:ENSGT00530000063105 CTD:2130
HOVERGEN:HBG000970 KO:K13209 OrthoDB:EOG42NJ15 EMBL:X79233
EMBL:AK019460 EMBL:AK151625 EMBL:AL645845 IPI:IPI00742310
PIR:A55726 RefSeq:NP_031994.2 UniGene:Mm.142822
ProteinModelPortal:Q61545 SMR:Q61545 IntAct:Q61545 STRING:Q61545
PhosphoSite:Q61545 PaxDb:Q61545 PRIDE:Q61545
Ensembl:ENSMUST00000079949 GeneID:14030 KEGG:mmu:14030
NextBio:284964 Bgee:Q61545 CleanEx:MM_EWSR1 Genevestigator:Q61545
GermOnline:ENSMUSG00000009079 Uniprot:Q61545
Length = 655
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 27/88 (30%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 358 DNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 417
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 418 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 27/92 (29%), Positives = 48/92 (52%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ +YV L ++T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 354 DEDSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 413
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 414 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 445
>UNIPROTKB|Q01844 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005516 "calmodulin binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50096 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 GO:GO:0005886
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0046872 EMBL:CH471095 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:AC002059 MIM:612160 Orphanet:97338
Pathway_Interaction_DB:bard1pathway eggNOG:NOG240581 EMBL:AL031186
MIM:612219 Orphanet:319 EMBL:X66899 EMBL:X72990 EMBL:X72991
EMBL:X72992 EMBL:X72993 EMBL:X72994 EMBL:X72995 EMBL:X72996
EMBL:X72997 EMBL:X72998 EMBL:X72999 EMBL:X73000 EMBL:X73001
EMBL:X73002 EMBL:X73003 EMBL:X73004 EMBL:Y07848 EMBL:CR456490
EMBL:AK056309 EMBL:AK056681 EMBL:AC000026 EMBL:BC000527
EMBL:BC004817 EMBL:BC011048 EMBL:BC072442 EMBL:Y08806 EMBL:AB016435
IPI:IPI00065554 IPI:IPI00293254 IPI:IPI00335961 IPI:IPI00872855
IPI:IPI00879259 PIR:A49358 RefSeq:NP_001156757.1
RefSeq:NP_001156759.1 RefSeq:NP_005234.1 RefSeq:NP_053733.2
UniGene:Hs.374477 PDB:2CPE PDBsum:2CPE ProteinModelPortal:Q01844
SMR:Q01844 IntAct:Q01844 MINT:MINT-2858561 STRING:Q01844
PhosphoSite:Q01844 DMDM:544261 PaxDb:Q01844 PRIDE:Q01844 DNASU:2130
Ensembl:ENST00000332035 Ensembl:ENST00000333395
Ensembl:ENST00000397938 Ensembl:ENST00000406548
Ensembl:ENST00000414183 GeneID:2130 KEGG:hsa:2130 UCSC:uc003aet.3
CTD:2130 GeneCards:GC22P029663 HGNC:HGNC:3508 HPA:CAB004230
MIM:133450 neXtProt:NX_Q01844 Orphanet:83469 PharmGKB:PA27921
HOGENOM:HOG000038010 HOVERGEN:HBG000970 KO:K13209 OMA:EGTSTGY
OrthoDB:EOG42NJ15 PhylomeDB:Q01844 ChiTaRS:EWSR1
EvolutionaryTrace:Q01844 GenomeRNAi:2130 NextBio:8605
ArrayExpress:Q01844 Bgee:Q01844 CleanEx:HS_EWSR1
Genevestigator:Q01844 GermOnline:ENSG00000182944 Uniprot:Q01844
Length = 656
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T
Sbjct: 350 PPVDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 409
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 410 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
Score = 126 (49.4 bits), Expect = 0.00025, P = 0.00025
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 359 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 419 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
>UNIPROTKB|F1LN98 [details] [associations]
symbol:Ewsr1 "Protein Ewsr1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GeneTree:ENSGT00530000063105 IPI:IPI00364603
Ensembl:ENSRNOT00000012634 ArrayExpress:F1LN98 Uniprot:F1LN98
Length = 656
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 359 DNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 418
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 419 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
Score = 124 (48.7 bits), Expect = 0.00040, P = 0.00040
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 355 DEDSDNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 414
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 415 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 446
>UNIPROTKB|F1MA60 [details] [associations]
symbol:Ewsr1 "Protein Ewsr1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 RGD:1307258
GO:GO:0005634 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00764664 Ensembl:ENSRNOT00000057382
ArrayExpress:F1MA60 Uniprot:F1MA60
Length = 661
Score = 127 (49.8 bits), Expect = 0.00019, P = 0.00019
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 364 DNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 423
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 424 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 451
Score = 124 (48.7 bits), Expect = 0.00041, P = 0.00041
Identities = 28/92 (30%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ VYV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 360 DEDSDNSAVYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 419
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 420 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 451
>FB|FBgn0005411 [details] [associations]
symbol:U2af50 "U2 small nuclear riboprotein auxiliary factor
50" species:7227 "Drosophila melanogaster" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS;IMP] [GO:0005686 "U2
snRNP" evidence=TAS] [GO:0008187 "poly-pyrimidine tract binding"
evidence=NAS;IDA] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0000245 "spliceosomal complex assembly"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0051168 "nuclear export" evidence=IMP]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006529 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 EMBL:AE014298 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0051168
GO:GO:0005686 GO:GO:0000381 GO:GO:0008187
GeneTree:ENSGT00690000102089 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 EMBL:L23404 EMBL:AY069320 PIR:A48249
RefSeq:NP_001245710.1 RefSeq:NP_476891.1 UniGene:Dm.5430
ProteinModelPortal:Q24562 SMR:Q24562 DIP:DIP-23323N IntAct:Q24562
MINT:MINT-790159 STRING:Q24562 PaxDb:Q24562 PRIDE:Q24562
EnsemblMetazoa:FBtr0074234 EnsemblMetazoa:FBtr0307178 GeneID:32602
KEGG:dme:Dmel_CG9998 CTD:32602 FlyBase:FBgn0005411
InParanoid:Q24562 OrthoDB:EOG40CFZH PhylomeDB:Q24562
GenomeRNAi:32602 NextBio:779380 Bgee:Q24562 GermOnline:CG9998
Uniprot:Q24562
Length = 416
Score = 75 (31.5 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 23/89 (25%), Positives = 40/89 (44%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+++ LP L ++ E++ G + L D T KG A C Y+
Sbjct: 208 KIFIGGLPNYLNDDQVKELLLSFGKLRA--------FNLVKDAATGLSKGYAFCEYVDLS 259
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMK 590
D +++ L+G ++ KK+ V+RA K
Sbjct: 260 ITDQSIAGLNGMQLGDKKLIVQRASVGAK 288
Score = 72 (30.4 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 195 VVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVM-QKCGLV--MKDVDTNQM 251
VVP + P I ++ ++YV N+P +T+EE +E Q+ LV + + +
Sbjct: 72 VVPDTPQTAVPVVGSTITRQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVL 131
Query: 252 KIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL--DGYEIRGKKIKVER 299
++ D K+F +++ S+D + DG ++G+ +K+ R
Sbjct: 132 ACQINLD---KNF------AFLEFRSIDETTQAMAFDGINLKGQSLKIRR 172
Score = 64 (27.6 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 657 EYQ---QDLREECSKCGHVKKVVLHDKHPEGV-----AQIFFKEPEAADA--CRELLNGR 706
EY+ +D++EEC+K G V+ V + + EGV ++F + D ++ L GR
Sbjct: 336 EYEDILEDIKEECTKYGVVRSVEI-PRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALTGR 394
Query: 707 WFGQRQITAETWD 719
F R + +D
Sbjct: 395 KFSDRVVVTSYFD 407
>UNIPROTKB|F1NCS2 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00641 PROSITE:PS50102 PROSITE:PS50199
SMART:SM00360 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00530000063105 EMBL:AADN02050467 EMBL:AADN02050468
EMBL:AADN02050469 IPI:IPI00590722 Ensembl:ENSGALT00000038026
Uniprot:F1NCS2
Length = 658
Score = 133 (51.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ VYV L ++T E+ + ++CG+V + T Q I LY D T
Sbjct: 351 PPMDPDEDSDNSSVYVQGLNDNVTLEDLADFFKQCGVVKMNKRTGQPMIHLYIDKETGKP 410
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
KGDA +Y + A+ DG + +G K+KV
Sbjct: 411 KGDATVSYDDPSTAKTAVEWFDGKDFQGSKLKV 443
Score = 131 (51.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L ++T E+ + ++CG+V + T Q I LY D T KGDA +Y
Sbjct: 360 DNSSVYVQGLNDNVTLEDLADFFKQCGVVKMNKRTGQPMIHLYIDKETGKPKGDATVSYD 419
Query: 559 KKESVDLALSILDGYEIRGKKIKV 582
+ A+ DG + +G K+KV
Sbjct: 420 DPSTAKTAVEWFDGKDFQGSKLKV 443
Score = 40 (19.1 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 157 QP--NTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKW 208
QP +T +PS QS V A+ PM+ A P +P +
Sbjct: 150 QPPSSTTGYNQPSLGYGQSNYSYPQVPASYPMQPVTAPPSYPPTSYSSTQPSSY 203
>UNIPROTKB|B0QYK0 [details] [associations]
symbol:EWSR1 "RNA-binding protein EWS" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199
SMART:SM00360 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AC002059
EMBL:AL031186 EMBL:AC000026 UniGene:Hs.374477 HGNC:HGNC:3508
HOGENOM:HOG000038010 HOVERGEN:HBG000970 ChiTaRS:EWSR1
IPI:IPI00879242 SMR:B0QYK0 STRING:B0QYK0 Ensembl:ENST00000331029
Uniprot:B0QYK0
Length = 618
Score = 126 (49.4 bits), Expect = 0.00023, P = 0.00023
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 321 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 380
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 381 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 408
Score = 123 (48.4 bits), Expect = 0.00048, P = 0.00048
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 317 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 376
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 377 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 408
>UNIPROTKB|F1NDA5 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00530000063105
EMBL:AADN02050467 EMBL:AADN02050468 EMBL:AADN02050469
IPI:IPI00820143 Ensembl:ENSGALT00000013237 OMA:PQTTATY
Uniprot:F1NDA5
Length = 690
Score = 133 (51.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ VYV L ++T E+ + ++CG+V + T Q I LY D T
Sbjct: 351 PPMDPDEDSDNSSVYVQGLNDNVTLEDLADFFKQCGVVKMNKRTGQPMIHLYIDKETGKP 410
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
KGDA +Y + A+ DG + +G K+KV
Sbjct: 411 KGDATVSYDDPSTAKTAVEWFDGKDFQGSKLKV 443
Score = 131 (51.2 bits), Expect = 0.00042, Sum P(2) = 0.00041
Identities = 29/84 (34%), Positives = 45/84 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ VYV L ++T E+ + ++CG+V + T Q I LY D T KGDA +Y
Sbjct: 360 DNSSVYVQGLNDNVTLEDLADFFKQCGVVKMNKRTGQPMIHLYIDKETGKPKGDATVSYD 419
Query: 559 KKESVDLALSILDGYEIRGKKIKV 582
+ A+ DG + +G K+KV
Sbjct: 420 DPSTAKTAVEWFDGKDFQGSKLKV 443
Score = 40 (19.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 14/54 (25%), Positives = 20/54 (37%)
Query: 157 QP--NTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKW 208
QP +T +PS QS V A+ PM+ A P +P +
Sbjct: 150 QPPSSTTGYNQPSLGYGQSNYSYPQVPASYPMQPVTAPPSYPPTSYSSTQPSSY 203
>ZFIN|ZDB-GENE-061215-102 [details] [associations]
symbol:zgc:158363 "zgc:158363" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR001876 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641
PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360
SMART:SM00547 ZFIN:ZDB-GENE-061215-102 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 eggNOG:NOG240581
GeneTree:ENSGT00530000063105 KO:K13098 OrthoDB:EOG4DV5NH
EMBL:CU633910 EMBL:CU929082 EMBL:BC128851 IPI:IPI00829178
RefSeq:NP_001073442.1 UniGene:Dr.104398 SMR:A1A5X7 STRING:A1A5X7
Ensembl:ENSDART00000102410 GeneID:558760 KEGG:dre:558760
InParanoid:A1A5X7 OMA:FARRYEC NextBio:20882619 Uniprot:A1A5X7
Length = 434
Score = 123 (48.4 bits), Expect = 0.00028, P = 0.00028
Identities = 29/97 (29%), Positives = 49/97 (50%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N ++V L D+ +E + ++ G++ + T + I LY+D T KG+A ++
Sbjct: 206 DNNTIFVQGLGEDVNAQEVGDYFKQIGIIKVNKKTGKPMINLYSDKATGRLKGEATVSFD 265
Query: 559 KKESVDLALSILDGYEIRGKKIKVE----RAKFTMKG 591
S A+ DG E G+ IKV RA+FT +G
Sbjct: 266 DPPSAKAAIDWFDGKEFNGRPIKVSFATRRAEFTQRG 302
Score = 118 (46.6 bits), Expect = 0.0010, P = 0.0010
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
++ ++V L D+ +E + ++ G++ + T + I LY+D T KG+A ++
Sbjct: 206 DNNTIFVQGLGEDVNAQEVGDYFKQIGIIKVNKKTGKPMINLYSDKATGRLKGEATVSFD 265
Query: 274 KKESVDLALSILDGYEIRGKKIKVE----RAKFTMKG 306
S A+ DG E G+ IKV RA+FT +G
Sbjct: 266 DPPSAKAAIDWFDGKEFNGRPIKVSFATRRAEFTQRG 302
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 97 (39.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 271 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 327
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 328 IAAVNALHGRWFAGKMITA 346
Score = 97 (39.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 639 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 696
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 271 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 327
Query: 697 DACRELLNGRWFGQRQITA 715
A L+GRWF + ITA
Sbjct: 328 IAAVNALHGRWFAGKMITA 346
Score = 70 (29.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 145
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 146 CAKKALEQLNGFELAGRPMKV 166
Score = 70 (29.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 145
Query: 562 SVDLALSILDGYEIRGKKIKV 582
AL L+G+E+ G+ +KV
Sbjct: 146 CAKKALEQLNGFELAGRPMKV 166
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 87 (35.7 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 34/142 (23%), Positives = 67/142 (47%)
Query: 167 SADLVQSKVEEKSVDATAPMENPKAEEKVVP--GQKRKPEP-PKWFDIGEESTK------ 217
SA+ V+ +E + + AP++ A+ K +P G K + P K G K
Sbjct: 60 SANGVKMDNDETAKEEKAPVKEKHAKPKAIPSLGNKNRFHPYSKEKSTGSAEKKAINRNR 119
Query: 218 VYVSNLPLDLTQEEFVEVM-QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
V++SN+P D+ + ++M +K G V ++L+ D K +G + + +E
Sbjct: 120 VFISNIPYDMKWQAIKDLMREKVGEVTY--------VELFKDAEGKS-RGCGVVEFKDEE 170
Query: 277 SVDLALSILDGYEIRGKKIKVE 298
V AL ++ Y++ G+ + ++
Sbjct: 171 FVKKALETMNKYDLSGRPLNIK 192
Score = 86 (35.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 362 LFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAAD-ACRELL 418
+F +++ L +Q+ L+E+ S+CGHV ++ + + +G + F PE+A+ ACR ++
Sbjct: 541 IFVRNLPFDLTWQK-LKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACR-IM 598
Query: 419 NGRWFGQRQI 428
NG R+I
Sbjct: 599 NGIKISGREI 608
Score = 86 (35.3 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 647 LFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAAD-ACRELL 703
+F +++ L +Q+ L+E+ S+CGHV ++ + + +G + F PE+A+ ACR ++
Sbjct: 541 IFVRNLPFDLTWQK-LKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACR-IM 598
Query: 704 NGRWFGQRQI 713
NG R+I
Sbjct: 599 NGIKISGREI 608
Score = 83 (34.3 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+ +++V NLP DLT ++ E +CG VM +IK+ K KG +
Sbjct: 537 KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMF------AEIKMENG---KS-KGCGTVRFD 586
Query: 559 KKESVDLALSILDGYEIRGKKIKV 582
ES + A I++G +I G++I V
Sbjct: 587 SPESAEKACRIMNGIKISGREIDV 610
>ZFIN|ZDB-GENE-030131-2317 [details] [associations]
symbol:ewsr1a "Ewing sarcoma breakpoint region 1a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0007067 "mitosis" evidence=IMP]
[GO:0021954 "central nervous system neuron development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS01358
PROSITE:PS50102 PROSITE:PS50199 SMART:SM00360 SMART:SM00547
ZFIN:ZDB-GENE-030131-2317 GO:GO:0007067 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 GO:GO:0021954
eggNOG:NOG240581 HOGENOM:HOG000038010 HOVERGEN:HBG000970 KO:K13209
OrthoDB:EOG42NJ15 EMBL:BC068397 IPI:IPI00488733
RefSeq:NP_001108610.1 UniGene:Dr.5648 ProteinModelPortal:Q6NUX1
PRIDE:Q6NUX1 GeneID:323597 KEGG:dre:323597 CTD:323597
NextBio:20808342 ArrayExpress:Q6NUX1 Bgee:Q6NUX1 Uniprot:Q6NUX1
Length = 624
Score = 130 (50.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
EN+ +Y++ L + T EE + + G++ + T + +YTD T KGDA +Y
Sbjct: 342 ENSTIYITGLTENATLEEVADFFKHSGIIRINKRTGLPAVNIYTDKDTGKPKGDATLSYE 401
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ S A+ DG + +GKK+KV A+
Sbjct: 402 EPPSAKAAVEWFDGKDFQGKKLKVSMAR 429
Score = 130 (50.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 33/105 (31%), Positives = 52/105 (49%)
Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
PG P + D E ST +Y++ L + T EE + + G++ + T + +Y
Sbjct: 327 PGDGEMGAPEEQDD-SENST-IYITGLTENATLEEVADFFKHSGIIRINKRTGLPAVNIY 384
Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
TD T KGDA +Y + S A+ DG + +GKK+KV A+
Sbjct: 385 TDKDTGKPKGDATLSYEEPPSAKAAVEWFDGKDFQGKKLKVSMAR 429
Score = 41 (19.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 101 RQDMSKGSYGYEGDTHTYTDSTDG 124
R MS+G G GD ++ DG
Sbjct: 307 RGGMSRGGMGIAGDRGGFSKPGDG 330
>UNIPROTKB|J9P1K6 [details] [associations]
symbol:J9P1K6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00641 PROSITE:PS50102
SMART:SM00360 SMART:SM00547 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GeneTree:ENSGT00530000063105 EMBL:AAEX03008745
Ensembl:ENSCAFT00000001155 Uniprot:J9P1K6
Length = 580
Score = 129 (50.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 30/96 (31%), Positives = 49/96 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L ++T ++ + ++CGLV + T Q I +Y D T
Sbjct: 291 PPVDPDEDSDNSAIYVQGLNDNVTLDDLADFFKQCGLVKMNKRTGQPMIHIYLDKETGKP 350
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERA 300
KGDA +Y + A+ DG + +G K+KV A
Sbjct: 351 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLA 386
Score = 128 (50.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L ++T ++ + ++CGLV + T Q I +Y D T KGDA +Y
Sbjct: 300 DNSAIYVQGLNDNVTLDDLADFFKQCGLVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 359
Query: 559 KKESVDLALSILDGYEIRGKKIKVERA 585
+ A+ DG + +G K+KV A
Sbjct: 360 DPPTAKAAVEWFDGKDFQGSKLKVSLA 386
Score = 41 (19.5 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 16/68 (23%), Positives = 24/68 (35%)
Query: 149 QMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKW 208
Q SYG QP V + + + AT+ + P P +P +W
Sbjct: 38 QQSYGTYGQPTDVSYTQAQTTATYGQ----TAYATSYGQPPAGY--TTPTAPAYSQPVQW 91
Query: 209 FDIGEEST 216
+D G T
Sbjct: 92 YDTGAYDT 99
>FB|FBgn0037939 [details] [associations]
symbol:CG14718 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001876
InterPro:IPR012677 Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102
PROSITE:PS50199 SMART:SM00360 SMART:SM00547 EMBL:AE014297
GO:GO:0000166 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0005622 GeneTree:ENSGT00530000063105 HSSP:Q9Y5S9
EMBL:AY051469 RefSeq:NP_650107.1 UniGene:Dm.4593 SMR:Q9VGJ3
MINT:MINT-323181 STRING:Q9VGJ3 EnsemblMetazoa:FBtr0082426
GeneID:41413 KEGG:dme:Dmel_CG14718 UCSC:CG14718-RA
FlyBase:FBgn0037939 eggNOG:NOG291204 InParanoid:Q9VGJ3
OrthoDB:EOG4TMPHH GenomeRNAi:41413 NextBio:823740 Uniprot:Q9VGJ3
Length = 446
Score = 121 (47.7 bits), Expect = 0.00049, P = 0.00049
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 183 TAPMENPKAEEKVVPGQKRKPEPPKWFDIGEE-----STKVYVSNLPLDLTQEEFVEVMQ 237
T+ M P+ +P + P + IG+E + V+V + L++T+ + +
Sbjct: 184 TSYMVFPRTAADYMP-RLALPRHRPYISIGQEQYVIQAETVFVLGMRLNVTKNDIILFFG 242
Query: 238 KCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
K G++ D TN+ KI +Y + T KG+A TY+ S A+S L G + G+ I V
Sbjct: 243 KVGVIKMDESTNKPKIFVYKNKITGRSKGEATITYVSPFSAQAAISCLSGAKFMGQVITV 302
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 93 (37.8 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 29/97 (29%), Positives = 47/97 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ DP K KG +
Sbjct: 100 AKEFTNVYIKNFGEEVDDESLKELFSQFG--------KTLSVKVMRDPNGKS-KGFGFVS 150
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G EI GK I V RA+ ++ +A
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA 187
Score = 61 (26.5 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 25/76 (32%), Positives = 36/76 (47%)
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEERE 449
VV + +G A + F+ EAAD E +NG R++ G R+K + +ERE
Sbjct: 43 VVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFV----G--RFK---SRKERE 93
Query: 450 ARL-KKWETFLGKKIK 464
A L K + F IK
Sbjct: 94 AELGAKAKEFTNVYIK 109
>DICTYBASE|DDB_G0286395 [details] [associations]
symbol:u2af2 "U2 snRNP auxiliary factor large
subunit" species:44689 "Dictyostelium discoideum" [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008187 "poly-pyrimidine tract binding"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006529 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286395 GenomeReviews:CM000153_GR
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AAFI02000085 GO:GO:0000398
GO:GO:0005686 GO:GO:0008187 eggNOG:NOG298004 KO:K12837
TIGRFAMs:TIGR01642 RefSeq:XP_637725.1 ProteinModelPortal:Q54LV5
SMR:Q54LV5 EnsemblProtists:DDB0233353 GeneID:8625590
KEGG:ddi:DDB_G0286395 InParanoid:Q54LV5 OMA:DELMDND Uniprot:Q54LV5
Length = 671
Score = 93 (37.8 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
EN K+YV LP +L++E+ ++ G + L D T KG A C Y
Sbjct: 377 EN-KIYVGGLPSNLSEEQVKSLLSAYGKLKA--------FNLVKDTNTGVSKGFAFCEYQ 427
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAKFTMK--GEA 593
E D+A S L+G + K + V+RA K G+A
Sbjct: 428 DSEVTDVACSKLNGIPLADKTLVVQRASIGSKPPGDA 464
Score = 72 (30.4 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 631 SKNESVIIVKNLFDPA-LFD-KDVTLILEYQQDLREECSKCGHVKKV--VLHDKHPEGVA 686
+K VI + NL D +FD K+ IL D++EEC + G V+ + L K+P V
Sbjct: 565 TKPSCVIQILNLVDREDIFDDKEYDNILI---DVKEECEQFGEVQSIWLPLPSKNPLEVT 621
Query: 687 QIF--FKEPEAADACRELLNGRWFGQR 711
+++ F + E A L GR + R
Sbjct: 622 RVYVEFSQVEFAQKACLALGGRKYNGR 648
Score = 48 (22.0 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 17/89 (19%), Positives = 38/89 (42%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++S ++YV N+P ++ E +E ++ +++T ++ K A +
Sbjct: 265 KQSRRIYVGNIPPGISDSELMEFFN-AAVLAANLNTKPGPPVVFCQINAP--KCFAFIEF 321
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
E A+ DG ++ +K+ R K
Sbjct: 322 RSPEEATNAMRF-DGISLKNFTLKIRRPK 349
Score = 38 (18.4 bits), Expect = 0.00065, Sum P(4) = 0.00065
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 16 TDPQSRQQYTWDNEKNEWKLRQ 37
T P SR+ WD + + ++ Q
Sbjct: 126 TTPTSRKSSLWDRQPDPNEVNQ 147
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 82 (33.9 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 27/97 (27%), Positives = 46/97 (47%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ N ++ E E+ + G + +K+ D K KG +
Sbjct: 116 AKEFTNVYIKNFGEEVDDENLRELFSQFG--------KTLSVKVMRDCSGKS-KGFGFVS 166
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEA 593
Y K E + A+ ++G E+ GK I V RA+ ++ +A
Sbjct: 167 YEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA 203
Score = 68 (29.0 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 660 QDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ LR+E S G + KV+L D +G + F PE A +NGR G + +
Sbjct: 237 EKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 292
Score = 61 (26.5 bits), Expect = 0.00068, Sum P(3) = 0.00068
Identities = 25/77 (32%), Positives = 37/77 (48%)
Query: 389 KVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
KVV + +G A + F+ EAA+ E +NG R++ G R+K + +ER
Sbjct: 58 KVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFV----G--RFK---SRKER 108
Query: 449 EARL-KKWETFLGKKIK 464
EA L K + F IK
Sbjct: 109 EAELGAKAKEFTNVYIK 125
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 86 (35.3 bits), Expect = 0.00073, Sum P(2) = 0.00072
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 362 LFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAAD-ACRELL 418
+F +++ L +Q+ L+E+ S+CGHV ++ + + +G + F PE+A+ ACR ++
Sbjct: 466 IFVRNLPFDLTWQK-LKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACR-IM 523
Query: 419 NGRWFGQRQI 428
NG R+I
Sbjct: 524 NGIKISGREI 533
Score = 86 (35.3 bits), Expect = 0.00073, Sum P(2) = 0.00072
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 647 LFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAAD-ACRELL 703
+F +++ L +Q+ L+E+ S+CGHV ++ + + +G + F PE+A+ ACR ++
Sbjct: 466 IFVRNLPFDLTWQK-LKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACR-IM 523
Query: 704 NGRWFGQRQI 713
NG R+I
Sbjct: 524 NGIKISGREI 533
Score = 82 (33.9 bits), Expect = 0.00073, Sum P(2) = 0.00072
Identities = 31/133 (23%), Positives = 62/133 (46%)
Query: 176 EEKSVDATAPMENPKAEEKVVP--GQKRKPEP-PKWFDIGEESTK------VYVSNLPLD 226
+E + + AP++ A+ K +P G K + P K G K V++SN+P D
Sbjct: 1 DETAKEEKAPVKEKHAKPKAIPSLGNKNRFHPYSKEKSTGSAEKKAINRNRVFISNIPYD 60
Query: 227 LTQEEFVEVM-QKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSIL 285
+ + ++M +K G V ++L+ D K +G + + +E V AL +
Sbjct: 61 MKWQAIKDLMREKVGEVTY--------VELFKDAEGKS-RGCGVVEFKDEEFVKKALETM 111
Query: 286 DGYEIRGKKIKVE 298
+ Y++ G+ + ++
Sbjct: 112 NKYDLSGRPLNIK 124
>UNIPROTKB|A8E651 [details] [associations]
symbol:EWSR1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001876 InterPro:IPR012677
Pfam:PF00641 PROSITE:PS01358 PROSITE:PS50102 PROSITE:PS50199
SMART:SM00360 SMART:SM00547 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG240581
GeneTree:ENSGT00530000063105 CTD:2130 HOGENOM:HOG000038010
HOVERGEN:HBG000970 KO:K13209 OMA:EGTSTGY OrthoDB:EOG42NJ15
EMBL:DAAA02045602 EMBL:BC153844 IPI:IPI00871084
RefSeq:NP_001103270.1 UniGene:Bt.33949 SMR:A8E651 STRING:A8E651
Ensembl:ENSBTAT00000023612 GeneID:534073 KEGG:bta:534073
InParanoid:A8E651 NextBio:20876260 Uniprot:A8E651
Length = 655
Score = 131 (51.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 30/97 (30%), Positives = 50/97 (51%)
Query: 205 PPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 264
PP D +++ +YV L +T ++ V+ ++CG+V + T Q I +Y D T
Sbjct: 349 PPVDPDEDSDNSAIYVQGLNDSVTLDDLVDFFKQCGVVKMNKRTGQPMIHIYLDKETGKP 408
Query: 265 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
KGDA +Y + A+ DG + +G K+KV A+
Sbjct: 409 KGDATVSYEDPATAKAAVEWFDGKDFQGSKLKVSLAR 445
Score = 130 (50.8 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ V+ ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 358 DNSAIYVQGLNDSVTLDDLVDFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 417
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 418 DPATAKAAVEWFDGKDFQGSKLKVSLAR 445
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 12/52 (23%), Positives = 18/52 (34%)
Query: 157 QPNTVDEKKPSADLVQSKVEEKSVDATAPMENPKAEEKVVPGQKRKPEPPKW 208
Q +T +PS QS V + PM+ A P +P +
Sbjct: 152 QSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVSAPPSYPPTSYSSTQPTSY 203
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 97 (39.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 422 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 478
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 479 IAAVNALHGRWFAGKMITA 497
Score = 70 (29.7 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 302
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 428 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 484
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 485 IAAVNALHGRWFAGKMITA 503
Score = 70 (29.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 302
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 428 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 484
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 485 IAAVNALHGRWFAGKMITA 503
Score = 70 (29.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 302
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 428 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 484
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 485 IAAVNALHGRWFAGKMITA 503
Score = 70 (29.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 302
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 97 (39.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 354 VKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE--AA 411
+ N+F+P +++V E + D+ EEC+K G V + + +G ++ K P AA
Sbjct: 428 LSNMFNPQT-EEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG--NVYVKCPSIAAA 484
Query: 412 DACRELLNGRWFGQRQITA 430
A L+GRWF + ITA
Sbjct: 485 IAAVNALHGRWFAGKMITA 503
Score = 70 (29.7 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV +L ++T++ + + G + I+L D T KG T+ E
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIES--------IQLMMDSETGRSKGYGFITFSDSE 302
Query: 277 SVDLALSILDGYEIRGKKIKV 297
AL L+G+E+ G+ +KV
Sbjct: 303 CAKKALEQLNGFELAGRPMKV 323
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 89 (36.4 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K++V NL +T E ++CG DV + ++ D T +G Y K
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECG----DV----VGARVVFDGDTGRSRGYGFVCYSSKA 229
Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
++ AL LDG+E+ G+ I+V A+
Sbjct: 230 EMETALESLDGFELEGRAIRVNLAQ 254
Score = 69 (29.3 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 23/86 (26%), Positives = 38/86 (44%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+TK+Y NLP ++ +++Q D ++ LY T +G A T
Sbjct: 84 NTKLYFGNLPYNVDSATLAQIIQ-------DFANPELVEVLYNRD-TGQSRGFAFVTMSN 135
Query: 275 KESVDLALSILDGYEIRGKKIKVERA 300
E ++ + LDG E G+ +KV A
Sbjct: 136 VEDCNIIIDNLDGTEYLGRALKVNFA 161
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 85 (35.0 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A+E T VY+ NL D+ E ++ + G + +K+ TD K KG +
Sbjct: 187 AKEFTNVYIKNLGEDMDDERLQDLFSRFGPALS--------VKVMTDESGKS-KGFGFVS 237
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + E A+ ++G ++ GK+I V RA+
Sbjct: 238 FERHEDARKAVDEMNGKDLNGKQIYVGRAQ 267
Score = 59 (25.8 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+YV +L D+T+ E G ++ I++Y D T+ G A + + E
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVYRDRTTRRSLGYASVNFQQLED 64
Query: 278 VDLALSILDGYEIRGKKIKV 297
+ AL ++ I+GK +++
Sbjct: 65 AERALDTMNFDVIKGKPVRI 84
Score = 54 (24.1 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 339 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQD-------LREECSKCGHVK--K 389
D M + K + V I+ + DP+L V I D L + S G++ K
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCK 129
Query: 390 VVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
VV + +G + F+ E A+ E +NG + R++
Sbjct: 130 VVCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKV 168
Score = 51 (23.0 bits), Expect = 0.00096, Sum P(4) = 0.00096
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 662 LREECSKCGHVK--KVVLHDKHPEGVAQIFFKEPEAADACRELLNGR 706
LR+E S G + KV + +G + F PE A +NGR
Sbjct: 320 LRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 366
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 773 685 0.00080 121 3 11 23 0.45 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 621 (66 KB)
Total size of DFA: 389 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.15u 0.09s 60.24t Elapsed: 00:00:14
Total cpu time: 60.17u 0.09s 60.26t Elapsed: 00:00:14
Start: Thu Aug 15 12:20:43 2013 End: Thu Aug 15 12:20:57 2013