RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2160
(773 letters)
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 87.3 bits (216), Expect = 2e-21
Identities = 49/96 (51%), Positives = 72/96 (75%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 404
R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA +
Sbjct: 4 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVS 63
Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99
Score = 87.3 bits (216), Expect = 2e-21
Identities = 49/96 (51%), Positives = 72/96 (75%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF 689
R ++E V+I+KN+F P F+ D ++ E ++DLR ECSK G ++K++L D+HP+GVA +
Sbjct: 4 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVS 63
Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
F++PE AD C + L+GRWFG RQITA+ WDG T Y+
Sbjct: 64 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99
Score = 30.3 bits (68), Expect = 0.22
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + G A ++ E D + LDG G++I +
Sbjct: 50 LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93
Score = 30.3 bits (68), Expect = 0.22
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + G A ++ E D + LDG G++I +
Sbjct: 50 LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWD 93
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 68.7 bits (167), Expect = 7e-15
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+N+ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA +Y
Sbjct: 7 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYE 66
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DG + +G K+KV A+
Sbjct: 67 DPPTAKAAVEWFDGKDFQGSKLKVSLAR 94
Score = 67.9 bits (165), Expect = 2e-14
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +++ +YV L +T ++ + ++CG+V + T Q I +Y D T KGDA
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+Y + A+ DG + +G K+KV A+
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLAR 94
Score = 32.8 bits (74), Expect = 0.033
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 23/100 (23%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----------- 392
+ + S I V+ L + VT DL + +CG VK
Sbjct: 3 DEDSDNSAIYVQGL------NDSVT-----LDDLADFFKQCGVVKMNKRTGQPMIHIYLD 51
Query: 393 -HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
P+G A + +++P A A E +G+ F ++
Sbjct: 52 KETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVS 91
Score = 32.8 bits (74), Expect = 0.033
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 23/100 (23%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----------- 677
+ + S I V+ L + VT DL + +CG VK
Sbjct: 3 DEDSDNSAIYVQGL------NDSVT-----LDDLADFFKQCGVVKMNKRTGQPMIHIYLD 51
Query: 678 -HDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
P+G A + +++P A A E +G+ F ++
Sbjct: 52 KETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVS 91
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 64.7 bits (157), Expect = 2e-13
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G ++YV NLP D+ ++ +V K G I+ + A
Sbjct: 11 GNNDCRIYVGNLPPDIRTKDIEDVFYKYG-----------AIRDIDLKNRRGGPPFAFVE 59
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + A+ DGY+ G +++VE +
Sbjct: 60 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 89
Score = 63.5 bits (154), Expect = 4e-13
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+ ++YV NLP D+ ++ +V K G I+ + A +
Sbjct: 13 NDCRIYVGNLPPDIRTKDIEDVFYKYG-----------AIRDIDLKNRRGGPPFAFVEFE 61
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ DGY+ G +++VE +
Sbjct: 62 DPRDAEDAVYGRDGYDYDGYRLRVEFPR 89
Score = 48.1 bits (114), Expect = 1e-07
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 341 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEG 399
+RG N+ I V NL D+ +D+ + K G ++ + + +
Sbjct: 6 IRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRRGGPP 54
Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
A + F++P A+ +G + ++ E
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 86
Score = 48.1 bits (114), Expect = 1e-07
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 626 MRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEG 684
+RG N+ I V NL D+ +D+ + K G ++ + + +
Sbjct: 6 IRGPAGNNDCRIYVGNL------PPDIR-----TKDIEDVFYKYGAIRDIDLKNRRGGPP 54
Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
A + F++P A+ +G + ++ E
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 86
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 61.9 bits (150), Expect = 2e-12
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL------HDKHPEGVAQIF 404
V+ + N+ P D E +D+R+ECSK G VK + + + G +
Sbjct: 6 VLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 64
Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWD 434
F + L GR F R + + D
Sbjct: 65 FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94
Score = 61.9 bits (150), Expect = 2e-12
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 7/90 (7%)
Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL------HDKHPEGVAQIF 689
V+ + N+ P D E +D+R+ECSK G VK + + + G +
Sbjct: 6 VLCLMNMVLPEELLDDEEY-EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVE 64
Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWD 719
F + L GR F R + + D
Sbjct: 65 FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 94
Score = 35.0 bits (80), Expect = 0.006
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
V L D EE VE ++ V + ++I D G +
Sbjct: 13 VLPEELLDDEEYEEIVEDVRDECSKYGLVKS--IEIPRPVDGVEVPGCGKIFVEFTSVFD 70
Query: 278 VDLALSILDGYEIRGKKIKVE 298
A+ L G + + + +
Sbjct: 71 CQKAMQGLTGRKFANRVVVTK 91
Score = 35.0 bits (80), Expect = 0.006
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
V L D EE VE ++ V + ++I D G +
Sbjct: 13 VLPEELLDDEEYEEIVEDVRDECSKYGLVKS--IEIPRPVDGVEVPGCGKIFVEFTSVFD 70
Query: 563 VDLALSILDGYEIRGKKIKVE 583
A+ L G + + + +
Sbjct: 71 CQKAMQGLTGRKFANRVVVTK 91
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 60.8 bits (147), Expect = 2e-12
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
NT + V+ LP D+T E + + G + K +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAF--------VDFTS 53
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
+ A+ +L+G +R K++KV A+
Sbjct: 54 EMDSQRAIKVLNGITVRNKRLKVSYAR 80
Score = 59.6 bits (144), Expect = 7e-12
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+T + V+ LP D+T E + + G + K +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAF--------VDFTS 53
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
+ A+ +L+G +R K++KV A+
Sbjct: 54 EMDSQRAIKVLNGITVRNKRLKVSYAR 80
Score = 39.6 bits (92), Expect = 8e-05
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 407
+IV L +D+T ++L G + + + G A + F
Sbjct: 5 LIVNYL------PQDMT-----DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 53
Query: 408 PEAADACRELLNGRWFGQRQITAE 431
+ ++LNG +++
Sbjct: 54 EMDSQRAIKVLNGITVRNKRLKVS 77
Score = 39.6 bits (92), Expect = 8e-05
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 15/84 (17%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 692
+IV L +D+T ++L G + + + G A + F
Sbjct: 5 LIVNYL------PQDMT-----DRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTS 53
Query: 693 PEAADACRELLNGRWFGQRQITAE 716
+ ++LNG +++
Sbjct: 54 EMDSQRAIKVLNGITVRNKRLKVS 77
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 59.6 bits (144), Expect = 8e-12
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+ K+++ LP L ++ E++ L D T KG A C Y+
Sbjct: 1 AHKLFIGGLPNYLNDDQVKELLTSF--------GPLKAFNLVKDSATGLSKGYAFCEYVD 52
Query: 275 KESVDLALSILDGYEIRGKKIKVERAKFTMKG 306
D A++ L+G ++ KK+ V+RA K
Sbjct: 53 INVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 84
Score = 58.9 bits (142), Expect = 1e-11
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+++ LP L ++ E++ L D T KG A C Y+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSF--------GPLKAFNLVKDSATGLSKGYAFCEYVDIN 54
Query: 562 SVDLALSILDGYEIRGKKIKVERAKFTMKG 591
D A++ L+G ++ KK+ V+RA K
Sbjct: 55 VTDQAIAGLNGMQLGDKKLLVQRASVGAKN 84
Score = 31.9 bits (72), Expect = 0.049
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIFFKE 407
+ + L + ++E + G +K L +G A + +
Sbjct: 4 LFIGGL------PNYLN-----DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 52
Query: 408 PEAADACRELLNGRWFGQRQIT 429
D LNG G +++
Sbjct: 53 INVTDQAIAGLNGMQLGDKKLL 74
Score = 31.9 bits (72), Expect = 0.049
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIFFKE 692
+ + L + ++E + G +K L +G A + +
Sbjct: 4 LFIGGL------PNYLN-----DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 52
Query: 693 PEAADACRELLNGRWFGQRQIT 714
D LNG G +++
Sbjct: 53 INVTDQAIAGLNGMQLGDKKLL 74
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 60.0 bits (145), Expect = 1e-11
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E + +Y+ NLP +T EE ++ K G I+ T + +G A Y
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYG-----------PIRQIRVGNTPETRGTAYVVY 53
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 330
A L G+ + + + V + D KK+++ L+ LK+
Sbjct: 54 EDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMD-----TKKKEEQLKLLKEKY 106
Score = 59.3 bits (143), Expect = 2e-11
Identities = 25/118 (21%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ N +Y+ NLP +T EE ++ K G I+ T + +G A Y
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYG-----------PIRQIRVGNTPETRGTAYVVY 53
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQ 615
A L G+ + + + V + D KK+++ L+ LK+
Sbjct: 54 EDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMD-----TKKKEEQLKLLKEKY 106
Score = 41.5 bits (97), Expect = 3e-05
Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEGVAQIFFKEPE 409
++ ++NL +T +++ + K G ++++ + G A + +++
Sbjct: 9 ILYIRNL------PYKIT-----AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 57
Query: 410 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 454
A + L+G R + ++ ++ + +++E +LK
Sbjct: 58 DAKNACDHLSGFNVCNRYLVVLYYNANRAFQ-KMDTKKKEEQLKL 101
Score = 41.5 bits (97), Expect = 3e-05
Identities = 14/105 (13%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV-LHDKHPEGVAQIFFKEPE 694
++ ++NL +T +++ + K G ++++ + G A + +++
Sbjct: 9 ILYIRNL------PYKIT-----AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 57
Query: 695 AADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKK 739
A + L+G R + ++ ++ + +++E +LK
Sbjct: 58 DAKNACDHLSGFNVCNRYLVVLYYNANRAFQ-KMDTKKKEEQLKL 101
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 58.6 bits (141), Expect = 2e-11
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T + V+ LP ++TQEEF + G + T G YI
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--------TGQSLGYGFVNYID 53
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
+ + A++ L+G ++ K IKV A+
Sbjct: 54 PKDAEKAINTLNGLRLQTKTIKVSYAR 80
Score = 58.6 bits (141), Expect = 2e-11
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
T + V+ LP ++TQEEF + G + T G YI
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI--------TGQSLGYGFVNYIDP 54
Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
+ + A++ L+G ++ K IKV A+
Sbjct: 55 KDAEKAINTLNGLRLQTKTIKVSYAR 80
Score = 35.9 bits (82), Expect = 0.002
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 407
+IV L +++T Q++ R G ++ L G + + +
Sbjct: 5 LIVNYL------PQNMT-----QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53
Query: 408 PEAADACRELLNGRWFGQRQITAE 431
P+ A+ LNG + I
Sbjct: 54 PKDAEKAINTLNGLRLQTKTIKVS 77
Score = 35.9 bits (82), Expect = 0.002
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGV----AQIFFKE 692
+IV L +++T Q++ R G ++ L G + + +
Sbjct: 5 LIVNYL------PQNMT-----QEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID 53
Query: 693 PEAADACRELLNGRWFGQRQITAE 716
P+ A+ LNG + I
Sbjct: 54 PKDAEKAINTLNGLRLQTKTIKVS 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 57.4 bits (138), Expect = 6e-11
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
T + V N+P ++ +E ++ G+A+ +
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGY--------QVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 275 KESVDLALSILDGYEIRGKKIKVERA 300
++ A+ L+ I +K+K+
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 57.0 bits (137), Expect = 7e-11
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
T + V N+P ++ +E ++ G+A+ +
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGY--------QVIPGSVCLKYNEKGMPTGEAMVAFES 60
Query: 560 KESVDLALSILDGYEIRGKKIKVERA 585
++ A+ L+ I +K+K+
Sbjct: 61 RDEATAAVIDLNDRPIGSRKVKLVLG 86
Score = 35.0 bits (80), Expect = 0.003
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFF 405
++I V+N+ V+ ++ + + V P G A + F
Sbjct: 10 TIIKVQNM------PFTVS-----IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58
Query: 406 KEPEAADACRELLNGRWFGQRQI 428
+ + A A LN R G R++
Sbjct: 59 ESRDEATAAVIDLNDRPIGSRKV 81
Score = 35.0 bits (80), Expect = 0.003
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFF 690
++I V+N+ V+ ++ + + V P G A + F
Sbjct: 10 TIIKVQNM------PFTVS-----IDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58
Query: 691 KEPEAADACRELLNGRWFGQRQI 713
+ + A A LN R G R++
Sbjct: 59 ESRDEATAAVIDLNDRPIGSRKV 81
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.6 bits (136), Expect = 9e-11
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
++A +N + V+NL D + + E+ + + +I L D T KG A
Sbjct: 3 RRADDNATIRVTNLSEDTRETDLQELFRPF--------GSISRIYLAKDKTTGQSKGFAF 54
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
++ ++E A++ + G+ + VE AK
Sbjct: 55 ISFHRREDAARAIAGVSGFGYDHLILNVEWAK 86
Score = 54.7 bits (131), Expect = 5e-10
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+++ + V+NL D + + E+ + + +I L D T KG A ++
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPF--------GSISRIYLAKDKTTGQSKGFAFISF 57
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
++E A++ + G+ + VE AK
Sbjct: 58 HRREDAARAIAGVSGFGYDHLILNVEWAK 86
Score = 33.1 bits (75), Expect = 0.017
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEG 399
R+ + + I V NL +D + DL+E G + ++ L +G
Sbjct: 3 RRADDNATIRVTNL------SEDTR-----ETDLQELFRPFGSISRIYLAKDKTTGQSKG 51
Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
A I F E A ++G + + E
Sbjct: 52 FAFISFHRREDAARAIAGVSGFGYDHLILNVE 83
Score = 33.1 bits (75), Expect = 0.017
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEG 684
R+ + + I V NL +D + DL+E G + ++ L +G
Sbjct: 3 RRADDNATIRVTNL------SEDTR-----ETDLQELFRPFGSISRIYLAKDKTTGQSKG 51
Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
A I F E A ++G + + E
Sbjct: 52 FAFISFHRREDAARAIAGVSGFGYDHLILNVE 83
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 57.0 bits (137), Expect = 1e-10
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
S +++V NL ++E+ ++ G ++ D TK KG A T
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVT 56
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
++ E A + +DG +G+ + V +
Sbjct: 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86
Score = 55.5 bits (133), Expect = 3e-10
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
+ + +++V NL ++E+ ++ G ++ D TK KG A T
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYG--------PLSELHYPIDSLTKKPKGFAFVT 56
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
++ E A + +DG +G+ + V +
Sbjct: 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86
Score = 34.7 bits (79), Expect = 0.006
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKE 407
+ V+NL + ++DL + S G + ++ P+G A + F
Sbjct: 11 LFVRNL------SYTSS-----EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59
Query: 408 PEAADACRELLNGRWFGQRQITAE 431
PE A ++G+ F R +
Sbjct: 60 PEHAVKAYAEVDGQVFQGRMLHVL 83
Score = 34.7 bits (79), Expect = 0.006
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEGVAQIFFKE 692
+ V+NL + ++DL + S G + ++ P+G A + F
Sbjct: 11 LFVRNL------SYTSS-----EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 59
Query: 693 PEAADACRELLNGRWFGQRQITAE 716
PE A ++G+ F R +
Sbjct: 60 PEHAVKAYAEVDGQVFQGRMLHVL 83
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 57.0 bits (137), Expect = 1e-10
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N ++++ +P +EE +E + K + DV I + +G A Y
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDV------IVYASAADKMKNRGFAFVEYES 54
Query: 560 KESVDLALSILDG--YEIRGKKIKVERAK 586
+ +A L ++ G +I V+ A+
Sbjct: 55 HRAAAMARRKLMPGRIQLWGHQIAVDWAE 83
Score = 53.9 bits (129), Expect = 1e-09
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
++++ +P +EE +E + K + DV I + +G A Y
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDV------IVYASAADKMKNRGFAFVEYESH 55
Query: 276 ESVDLALSILDG--YEIRGKKIKVERAK 301
+ +A L ++ G +I V+ A+
Sbjct: 56 RAAAMARRKLMPGRIQLWGHQIAVDWAE 83
Score = 30.8 bits (69), Expect = 0.15
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 17/78 (21%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV------LHDKHPEGVAQIFF 405
+ + + K ++++ EE +K V G A + +
Sbjct: 4 LFIGGI------PKMKK-----REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEY 52
Query: 406 KEPEAADACRELLNGRWF 423
+ AA R L
Sbjct: 53 ESHRAAAMARRKLMPGRI 70
Score = 30.8 bits (69), Expect = 0.15
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 17/78 (21%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVV------LHDKHPEGVAQIFF 690
+ + + K ++++ EE +K V G A + +
Sbjct: 4 LFIGGI------PKMKK-----REEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEY 52
Query: 691 KEPEAADACRELLNGRWF 708
+ AA R L
Sbjct: 53 ESHRAAAMARRKLMPGRI 70
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 56.3 bits (135), Expect = 1e-10
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
++YV N+P +T+E ++ + Q K A + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 59
Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
A+ DG +G+ +K+ R
Sbjct: 60 ETTQAM-AFDGIIFQGQSLKIRRPH 83
Score = 56.3 bits (135), Expect = 1e-10
Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 4/85 (4%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
++YV N+P +T+E ++ + Q K A + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRL---GGLTQAPGNPVLAVQINQDKNFAFLEFRSVD 59
Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
A+ DG +G+ +K+ R
Sbjct: 60 ETTQAM-AFDGIIFQGQSLKIRRPH 83
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 56.6 bits (136), Expect = 1e-10
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
++ VYV L +++ E+ + G + + D T +G ++
Sbjct: 8 QDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEFL 59
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+E D A+ I+D ++ GK I+V +A
Sbjct: 60 SEEDADYAIKIMDMIKLYGKPIRVNKAS 87
Score = 55.4 bits (133), Expect = 3e-10
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+ VYV L +++ E+ + G + + D T +G +
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAG--------PVVNTHMPKDRVTGQHQGYGFVEF 58
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ +E D A+ I+D ++ GK I+V +A
Sbjct: 59 LSEEDADYAIKIMDMIKLYGKPIRVNKAS 87
Score = 31.9 bits (72), Expect = 0.045
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEG 399
ER+++ + + V L D+ V+ + L E + G V + +G
Sbjct: 5 ERNQDAT-VYVGGL------DEKVS-----EPLLWELFLQAGPVVNTHMPKDRVTGQHQG 52
Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQIT 429
+ F E AD ++++ + I
Sbjct: 53 YGFVEFLSEEDADYAIKIMDMIKLYGKPIR 82
Score = 31.9 bits (72), Expect = 0.045
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 16/90 (17%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEG 684
ER+++ + + V L D+ V+ + L E + G V + +G
Sbjct: 5 ERNQDAT-VYVGGL------DEKVS-----EPLLWELFLQAGPVVNTHMPKDRVTGQHQG 52
Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQIT 714
+ F E AD ++++ + I
Sbjct: 53 YGFVEFLSEEDADYAIKIMDMIKLYGKPIR 82
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 56.6 bits (136), Expect = 1e-10
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
KK + + NL ++T++E EV + + + K G A
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK-------------GIAY 57
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + + L G EI G+ + +
Sbjct: 58 IEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89
Score = 54.3 bits (130), Expect = 7e-10
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 13/89 (14%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+ + NL ++T++E EV + + + K G A +
Sbjct: 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSK-------------GIAYIEF 60
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + L G EI G+ + +
Sbjct: 61 KSEADAEKNLEEKQGAEIDGRSVSLYYTG 89
Score = 37.3 bits (86), Expect = 7e-04
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 339 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 398
D ++ + ++ KNL ++T + +L+E ++ V D +
Sbjct: 6 DPCTSKKVRAARTLLAKNL------SFNIT-----EDELKEVFEDALEIRLVS-QDGKSK 53
Query: 399 GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
G+A I FK A+ E G R ++
Sbjct: 54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86
Score = 37.3 bits (86), Expect = 7e-04
Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 12/93 (12%)
Query: 624 DKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE 683
D ++ + ++ KNL ++T + +L+E ++ V D +
Sbjct: 6 DPCTSKKVRAARTLLAKNL------SFNIT-----EDELKEVFEDALEIRLVS-QDGKSK 53
Query: 684 GVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
G+A I FK A+ E G R ++
Sbjct: 54 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 55.9 bits (134), Expect = 2e-10
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A + K++V L D ++ +V K ++ + D T+ +G T
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKY--------GQISEVVVVKDRETQRSRGFGFVT 53
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + A+ ++G + G++I+V++A
Sbjct: 54 FENIDDAKDAMMAMNGKSVDGRQIRVDQAG 83
Score = 55.9 bits (134), Expect = 2e-10
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 211 IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 270
+ + K++V L D ++ +V K ++ + D T+ +G
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKY--------GQISEVVVVKDRETQRSRGFGFV 52
Query: 271 TYIKKESVDLALSILDGYEIRGKKIKVERAK 301
T+ + A+ ++G + G++I+V++A
Sbjct: 53 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 83
Score = 30.1 bits (67), Expect = 0.19
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE----GVA 401
+ +E + V L D +Q L + SK G + +VV+ G
Sbjct: 2 ASDEGKLFVGGL------SFDTN-----EQSLEQVFSKYGQISEVVVVKDRETQRSRGFG 50
Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
+ F+ + A +NG+ RQI +
Sbjct: 51 FVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
Score = 30.1 bits (67), Expect = 0.19
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPE----GVA 686
+ +E + V L D +Q L + SK G + +VV+ G
Sbjct: 2 ASDEGKLFVGGL------SFDTN-----EQSLEQVFSKYGQISEVVVVKDRETQRSRGFG 50
Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
+ F+ + A +NG+ RQI +
Sbjct: 51 FVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 54.9 bits (132), Expect = 3e-10
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+YV +L D+T+ E G ++ I++ D T+ G A + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPA 53
Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
+ AL ++ I+GK +++ ++
Sbjct: 54 DAERALDTMNFDVIKGKPVRIMWSQ 78
Score = 54.9 bits (132), Expect = 3e-10
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 8/85 (9%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+YV +L D+T+ E G ++ I++ D T+ G A + +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILS--------IRVCRDMITRRSLGYAYVNFQQPA 53
Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
+ AL ++ I+GK +++ ++
Sbjct: 54 DAERALDTMNFDVIKGKPVRIMWSQ 78
Score = 39.9 bits (93), Expect = 7e-05
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKE 407
+ V +L DVT + L E+ S G + + + + G A + F++
Sbjct: 3 LYVGDL------HPDVT-----EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 51
Query: 408 PEAADACRELLNGRWFGQRQI 428
P A+ + +N + +
Sbjct: 52 PADAERALDTMNFDVIKGKPV 72
Score = 39.9 bits (93), Expect = 7e-05
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL----HDKHPEGVAQIFFKE 692
+ V +L DVT + L E+ S G + + + + G A + F++
Sbjct: 3 LYVGDL------HPDVT-----EAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 51
Query: 693 PEAADACRELLNGRWFGQRQI 713
P A+ + +N + +
Sbjct: 52 PADAERALDTMNFDVIKGKPV 72
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 54.7 bits (131), Expect = 4e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 219 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 278
++ NL T+E V K G + + K G Y K E
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIK-----SCTISKKKNKAGVLLSMGFGFVEYKKPEQA 56
Query: 279 DLALSILDGYEIRGKKIKVERAKFTMK 305
AL L G+ + G K++V ++ K
Sbjct: 57 QKALKQLQGHTVDGHKLEVRISERATK 83
Score = 54.7 bits (131), Expect = 4e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 504 YVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESV 563
++ NL T+E V K G + + K G Y K E
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIK-----SCTISKKKNKAGVLLSMGFGFVEYKKPEQA 56
Query: 564 DLALSILDGYEIRGKKIKVERAKFTMK 590
AL L G+ + G K++V ++ K
Sbjct: 57 QKALKQLQGHTVDGHKLEVRISERATK 83
Score = 34.6 bits (79), Expect = 0.005
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV-------KKVVLHDKHPEGVAQIF 404
+ +KNL + T ++ L+ SK G + KK G +
Sbjct: 1 LFIKNL------NFSTT-----EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 49
Query: 405 FKEPEAADACRELLNGRWFGQRQITAETWDGKTR 438
+K+PE A + L G ++ + T+
Sbjct: 50 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 83
Score = 34.6 bits (79), Expect = 0.005
Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 18/94 (19%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHV-------KKVVLHDKHPEGVAQIF 689
+ +KNL + T ++ L+ SK G + KK G +
Sbjct: 1 LFIKNL------NFSTT-----EETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVE 49
Query: 690 FKEPEAADACRELLNGRWFGQRQITAETWDGKTR 723
+K+PE A + L G ++ + T+
Sbjct: 50 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 83
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 54.6 bits (131), Expect = 5e-10
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
+T +YV+NLP +T ++ + K G +++ T +G A Y K
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--------TGRPRGVAFVRYNK 57
Query: 560 KESVDLALSILDGYEIRG--KKIKVERA 585
+E A+S L+ G + + V A
Sbjct: 58 REEAQEAISALNNVIPEGGSQPLSVRLA 85
Score = 53.0 bits (127), Expect = 1e-09
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 212 GEE--STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
GE T +YV+NLP +T ++ + K G +++ T +G A
Sbjct: 1 GESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL--------TGRPRGVAF 52
Query: 270 CTYIKKESVDLALSILDGYEIRG--KKIKVERA 300
Y K+E A+S L+ G + + V A
Sbjct: 53 VRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
Score = 37.2 bits (86), Expect = 6e-04
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PE 398
GE K+ + + V NL + +T L K G + + + P
Sbjct: 1 GESIKD-TNLYVTNL------PRTIT-----DDQLDTIFGKYGSIVQKNILRDKLTGRPR 48
Query: 399 GVAQIFFKEPEAADACRELLNGRWF--GQRQIT 429
GVA + + + E A LN G + ++
Sbjct: 49 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81
Score = 37.2 bits (86), Expect = 6e-04
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PE 683
GE K+ + + V NL + +T L K G + + + P
Sbjct: 1 GESIKD-TNLYVTNL------PRTIT-----DDQLDTIFGKYGSIVQKNILRDKLTGRPR 48
Query: 684 GVAQIFFKEPEAADACRELLNGRWF--GQRQIT 714
GVA + + + E A LN G + ++
Sbjct: 49 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 81
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 54.7 bits (131), Expect = 5e-10
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
+++ E ++V+++ + ++E E G I L D T KG AL
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYAL 53
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
Y + A L+G EI G+ I+V+
Sbjct: 54 VEYETHKQALAAKEALNGAEIMGQTIQVDWCF 85
Score = 52.8 bits (126), Expect = 2e-09
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E ++V+++ + ++E E G I L D T KG AL Y
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYG--------EIKNIHLNLDRRTGFSKGYALVEYE 57
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
+ A L+G EI G+ I+V+
Sbjct: 58 THKQALAAKEALNGAEIMGQTIQVDWCF 85
Score = 36.6 bits (84), Expect = 0.001
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEG 399
+RS ++ V ++ ++ + +++E+ G +K + L+ +G
Sbjct: 2 QRSVEGWILFVTSI------HEEAQ-----EDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 50
Query: 400 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
A + ++ + A A +E LNG + I +
Sbjct: 51 YALVEYETHKQALAAKEALNGAEIMGQTIQVD 82
Score = 36.6 bits (84), Expect = 0.001
Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK----HPEG 684
+RS ++ V ++ ++ + +++E+ G +K + L+ +G
Sbjct: 2 QRSVEGWILFVTSI------HEEAQ-----EDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 50
Query: 685 VAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
A + ++ + A A +E LNG + I +
Sbjct: 51 YALVEYETHKQALAAKEALNGAEIMGQTIQVD 82
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 53.8 bits (129), Expect = 6e-10
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K+++ L TQE E + G + + DP TK +G T++ +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQA 53
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
VD L+ +E+ K I + A
Sbjct: 54 GVDKVLA-QSRHELDSKTIDPKVA 76
Score = 53.8 bits (129), Expect = 6e-10
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+++ L TQE E + G + + DP TK +G T++ +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFG--------EVKECLVMRDPLTKRSRGFGFVTFMDQA 53
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
VD L+ +E+ K I + A
Sbjct: 54 GVDKVLA-QSRHELDSKTIDPKVA 76
Score = 33.8 bits (77), Expect = 0.009
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKE 407
+ + L T Q+ LRE + G VK+ ++ K G + F +
Sbjct: 3 MFIGGL------SWQTT-----QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 51
Query: 408 PEAADACRELLNGRWFGQRQIT 429
D + + I
Sbjct: 52 QAGVDKVLA-QSRHELDSKTID 72
Score = 33.8 bits (77), Expect = 0.009
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKE 692
+ + L T Q+ LRE + G VK+ ++ K G + F +
Sbjct: 3 MFIGGL------SWQTT-----QEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 51
Query: 693 PEAADACRELLNGRWFGQRQIT 714
D + + I
Sbjct: 52 QAGVDKVLA-QSRHELDSKTID 72
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 55.7 bits (133), Expect = 6e-10
Identities = 15/117 (12%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 185 PMENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMK 244
P +++ Q++ P + + + V+ +P + + + ++ ++ G +
Sbjct: 12 PYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES 71
Query: 245 DVDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + + S A++ L+G+ I K++KV A
Sbjct: 72 VKIVCDRETRQSRGYGF--------VKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120
Score = 49.9 bits (118), Expect = 6e-08
Identities = 12/105 (11%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
+ +++ + + + V+ +P + + + ++ ++ G + + +
Sbjct: 24 QQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS 83
Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ S A++ L+G+ I K++KV A
Sbjct: 84 RGYGF--------VKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120
Score = 33.0 bits (74), Expect = 0.046
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 23/127 (18%)
Query: 309 YDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT 368
YDP + + ++ ++ + + PD +R ++V + V
Sbjct: 10 YDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLR--------NLMVNYI------PTTVD 55
Query: 369 LILEYQQDLREECS----KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 424
+ LR+ + G + F+ +A LNG
Sbjct: 56 -----EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110
Query: 425 QRQITAE 431
+++
Sbjct: 111 NKRLKVA 117
Score = 33.0 bits (74), Expect = 0.046
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 23/127 (18%)
Query: 594 YDPKLKPKKKRKKDLEKLKKAQEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVT 653
YDP + + ++ ++ + + PD +R ++V + V
Sbjct: 10 YDPYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLR--------NLMVNYI------PTTVD 55
Query: 654 LILEYQQDLREECS----KCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFG 709
+ LR+ + G + F+ +A LNG
Sbjct: 56 -----EVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL 110
Query: 710 QRQITAE 716
+++
Sbjct: 111 NKRLKVA 117
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.0 bits (129), Expect = 8e-10
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
S+ + V NLP D +E ++++ L VD N+ A T +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK---------------RTAFVTLLN 49
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
E A+ + Y RGK + V+
Sbjct: 50 GEQAQNAIQMFHQYSFRGKDLIVQLQP 76
Score = 52.1 bits (124), Expect = 3e-09
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
++ + V NLP D +E ++++ L VD N+ A T +
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK---------------RTAFVTLLN 49
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
E A+ + Y RGK + V+
Sbjct: 50 GEQAQNAIQMFHQYSFRGKDLIVQLQP 76
Score = 33.9 bits (77), Expect = 0.009
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 405
S S I+VKNL +D Q++ + + + A +
Sbjct: 2 SSGSSGILVKNL------PQDSN-----CQEVHDLLKDYDLKYC---YVDRNKRTAFVTL 47
Query: 406 KEPEAADACRELLNGRWFGQRQITAE 431
E A ++ + F + + +
Sbjct: 48 LNGEQAQNAIQMFHQYSFRGKDLIVQ 73
Score = 33.9 bits (77), Expect = 0.009
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 690
S S I+VKNL +D Q++ + + + A +
Sbjct: 2 SSGSSGILVKNL------PQDSN-----CQEVHDLLKDYDLKYC---YVDRNKRTAFVTL 47
Query: 691 KEPEAADACRELLNGRWFGQRQITAE 716
E A ++ + F + + +
Sbjct: 48 LNGEQAQNAIQMFHQYSFRGKDLIVQ 73
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 53.9 bits (129), Expect = 1e-09
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
+ VP +++K E E+ K+++ L + T+E ++ G
Sbjct: 6 ETVPLERKKREK-------EQFRKLFIGGLSFETTEESLRNYYEQWG--------KLTDC 50
Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ DP +K +G T+ VD A++ + I G+ ++ +RA
Sbjct: 51 VVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAV 97
Score = 52.0 bits (124), Expect = 6e-09
Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
P +++K++ E+ +K +++ L + T+E ++ G +
Sbjct: 8 VPLERKKREKEQFRK------LFIGGLSFETTEESLRNYYEQWG--------KLTDCVVM 53
Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
DP +K +G T+ VD A++ + I G+ ++ +RA
Sbjct: 54 RDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGRVVEPKRAV 97
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 53.5 bits (128), Expect = 1e-09
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 497 AQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 556
A +YV L ++ + G + D T+ +G A
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI--------PLDYETEKHRGFAFVE 53
Query: 557 YIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ E A+ ++ E+ G+ I+V AK
Sbjct: 54 FELAEDAAAAIDNMNESELFGRTIRVNLAK 83
Score = 52.0 bits (124), Expect = 4e-09
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+YV L ++ + G + D T+ +G A +
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQI--------PLDYETEKHRGFAFVEFEL 56
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
E A+ ++ E+ G+ I+V AK
Sbjct: 57 AEDAAAAIDNMNESELFGRTIRVNLAK 83
Score = 34.6 bits (79), Expect = 0.005
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVA 401
+ + V+ V L ++V + L G + + + + G A
Sbjct: 2 ATTKRVLYVGGL------AEEVD-----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFA 50
Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
+ F+ E A A + +N R I
Sbjct: 51 FVEFELAEDAAAAIDNMNESELFGRTIRVN 80
Score = 34.6 bits (79), Expect = 0.005
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHD----KHPEGVA 686
+ + V+ V L ++V + L G + + + + G A
Sbjct: 2 ATTKRVLYVGGL------AEEVD-----DKVLHAAFIPFGDITDIQIPLDYETEKHRGFA 50
Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
+ F+ E A A + +N R I
Sbjct: 51 FVEFELAEDAAAAIDNMNESELFGRTIRVN 80
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 53.0 bits (127), Expect = 1e-09
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 14/92 (15%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K + ++++V NLP D+T+EE ++ +K G +
Sbjct: 3 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF--------------GF 48
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ ++A LD +RGK+++V A
Sbjct: 49 IRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80
Score = 51.9 bits (124), Expect = 4e-09
Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 212 GEES----TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 267
GE++ ++++V NLP D+T+EE ++ +K G +
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGF-------------- 46
Query: 268 ALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ ++A LD +RGK+++V A
Sbjct: 47 GFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 80
Score = 40.7 bits (95), Expect = 4e-05
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 343 GERS-KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
GE++ S + V NL D+T ++++R+ K G +V +G
Sbjct: 1 GEKTFTQRSRLFVGNL------PPDIT-----EEEMRKLFEKYGKAGEV--FIHKDKGFG 47
Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
I + A+ + L+ +Q+
Sbjct: 48 FIRLETRTLAEIAKVELDNMPLRGKQLRVR 77
Score = 40.7 bits (95), Expect = 4e-05
Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 628 GERS-KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 686
GE++ S + V NL D+T ++++R+ K G +V +G
Sbjct: 1 GEKTFTQRSRLFVGNL------PPDIT-----EEEMRKLFEKYGKAGEV--FIHKDKGFG 47
Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
I + A+ + L+ +Q+
Sbjct: 48 FIRLETRTLAEIAKVELDNMPLRGKQLRVR 77
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.8 bits (126), Expect = 2e-09
Identities = 20/100 (20%), Positives = 38/100 (38%), Gaps = 17/100 (17%)
Query: 198 GQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
G + P+P + + V L L T+ + EV K G + +
Sbjct: 1 GNRANPDP---------NCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVY 43
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKV 297
D ++ +G A + + A +G E+ G++I+V
Sbjct: 44 DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
Score = 50.9 bits (121), Expect = 9e-09
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N + V L L T+ + EV K G + + D ++ +G A +
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYG--------PIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 560 KESVDLALSILDGYEIRGKKIKV 582
+ A +G E+ G++I+V
Sbjct: 61 VDDAKEAKERANGMELDGRRIRV 83
Score = 36.6 bits (84), Expect = 0.001
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 343 GERSKNE--SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---- 396
G R+ + + V L T ++DLRE SK G + V +
Sbjct: 1 GNRANPDPNCCLGVFGL------SLYTT-----ERDLREVFSKYGPIADVSIVYDQQSRR 49
Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
G A ++F+ + A +E NG R+I
Sbjct: 50 SRGFAFVYFENVDDAKEAKERANGMELDGRRIR 82
Score = 36.6 bits (84), Expect = 0.001
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 17/93 (18%)
Query: 628 GERSKNE--SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH---- 681
G R+ + + V L T ++DLRE SK G + V +
Sbjct: 1 GNRANPDPNCCLGVFGL------SLYTT-----ERDLREVFSKYGPIADVSIVYDQQSRR 49
Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
G A ++F+ + A +E NG R+I
Sbjct: 50 SRGFAFVYFENVDDAKEAKERANGMELDGRRIR 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 52.9 bits (127), Expect = 3e-09
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDA 268
D +++V++ NL + ++ V + K G ++ KG A
Sbjct: 10 DPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG----------------CSVHKGFA 53
Query: 269 LCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
Y+ + + A++ DG I G+ + + A
Sbjct: 54 FVQYVNERNARAAVAGEDGRMIAGQVLDINLAA 86
Score = 52.2 bits (125), Expect = 4e-09
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 17/92 (18%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFV-EVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
N++V++ NL + ++ V + K G ++ KG A
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVG----------------CSVHKGFAF 54
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
Y+ + + A++ DG I G+ + + A
Sbjct: 55 VQYVNERNARAAVAGEDGRMIAGQVLDINLAA 86
Score = 43.7 bits (103), Expect = 4e-06
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 342 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 401
+ + S + + NL + V + D+ SK G + +G A
Sbjct: 8 KTDPRSMNSRVFIGNL------NTLVV----KKSDVEAIFSKYGKIVGC----SVHKGFA 53
Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
+ + A A +GR + +
Sbjct: 54 FVQYVNERNARAAVAGEDGRMIAGQVLDIN 83
Score = 43.7 bits (103), Expect = 4e-06
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 14/90 (15%)
Query: 627 RGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVA 686
+ + S + + NL + V + D+ SK G + +G A
Sbjct: 8 KTDPRSMNSRVFIGNL------NTLVV----KKSDVEAIFSKYGKIVGC----SVHKGFA 53
Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
+ + A A +GR + +
Sbjct: 54 FVQYVNERNARAAVAGEDGRMIAGQVLDIN 83
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 52.6 bits (126), Expect = 3e-09
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K +++ +YV NL T+E+ E+ K G + KI + D K G
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCF 53
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
Y + + A+ ++G + + I+ +
Sbjct: 54 VEYYSRADAENAMRYINGTRLDDRIIRTDWDA 85
Score = 52.6 bits (126), Expect = 3e-09
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++S +YV NL T+E+ E+ K G + KI + D K G Y
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSG--------DIKKIIMGLDKMKKTACGFCFVEY 56
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + A+ ++G + + I+ +
Sbjct: 57 YSRADAENAMRYINGTRLDDRIIRTDWDA 85
Score = 31.8 bits (72), Expect = 0.053
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 347 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF-- 404
K + V NL T ++ + E SK G +KK+++ + A F
Sbjct: 5 KKSCTLYVGNL------SFYTT-----EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCF 53
Query: 405 --FKEPEAADACRELLNGRWFGQRQITAE 431
+ A+ +NG R I +
Sbjct: 54 VEYYSRADAENAMRYINGTRLDDRIIRTD 82
Score = 31.8 bits (72), Expect = 0.053
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 632 KNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIF-- 689
K + V NL T ++ + E SK G +KK+++ + A F
Sbjct: 5 KKSCTLYVGNL------SFYTT-----EEQIYELFSKSGDIKKIIMGLDKMKKTACGFCF 53
Query: 690 --FKEPEAADACRELLNGRWFGQRQITAE 716
+ A+ +NG R I +
Sbjct: 54 VEYYSRADAENAMRYINGTRLDDRIIRTD 82
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 52.2 bits (125), Expect = 4e-09
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 493 KLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKG 551
++ K Q +K+ V N+P Q E E+ G ++L T +G
Sbjct: 1 QVPKKQTTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRG 52
Query: 552 DALCTYIKKESVDLALSIL-DGYEIRGKKIKVERAK 586
+I K+ A + L + G+++ +E A
Sbjct: 53 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 88
Score = 51.5 bits (123), Expect = 8e-09
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 10/91 (10%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDP-YTKDFKGDALCT 271
+ ++K+ V N+P Q E E+ G ++L T +G
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFG--------ELKTVRLPKKMTGTGAHRGFGFVD 57
Query: 272 YIKKESVDLALSIL-DGYEIRGKKIKVERAK 301
+I K+ A + L + G+++ +E A
Sbjct: 58 FITKQDAKKAFNALCHSTHLYGRRLVLEWAD 88
Score = 35.7 bits (82), Expect = 0.002
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEG 399
+ + S I+V+N+ Q+++RE S G +K V L G
Sbjct: 4 KKQTTSKILVRNI------PFQAN-----QREIRELFSTFGELKTVRLPKKMTGTGAHRG 52
Query: 400 VAQIFFKEPEAAD-ACRELLNGRWFGQRQITAETWDGKTRYK 440
+ F + A A L + R++ E D + +
Sbjct: 53 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 35.7 bits (82), Expect = 0.002
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 17/102 (16%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-----HDKHPEG 684
+ + S I+V+N+ Q+++RE S G +K V L G
Sbjct: 4 KKQTTSKILVRNI------PFQAN-----QREIRELFSTFGELKTVRLPKKMTGTGAHRG 52
Query: 685 VAQIFFKEPEAAD-ACRELLNGRWFGQRQITAETWDGKTRYK 725
+ F + A A L + R++ E D + +
Sbjct: 53 FGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 51.5 bits (123), Expect = 5e-09
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K+ VSNL ++ + E+ + G +K + G A + +K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFG---------TLKKAAVHYDRSGRSLGTADVHFERKA 52
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
A+ +G + G+ + ++
Sbjct: 53 DALKAMKQYNGVPLDGRPMNIQLV 76
Score = 51.5 bits (123), Expect = 5e-09
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+ VSNL ++ + E+ + G +K + G A + +K
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFG---------TLKKAAVHYDRSGRSLGTADVHFERKA 52
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
A+ +G + G+ + ++
Sbjct: 53 DALKAMKQYNGVPLDGRPMNIQLV 76
Score = 38.4 bits (89), Expect = 2e-04
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 408
++V NL D V+ D++E ++ G +KK + G A + F+
Sbjct: 3 LLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 51
Query: 409 EAADACRELLNGRWFGQRQITAE 431
A + NG R + +
Sbjct: 52 ADALKAMKQYNGVPLDGRPMNIQ 74
Score = 38.4 bits (89), Expect = 2e-04
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 14/83 (16%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL---HDKHPEGVAQIFFKEP 693
++V NL D V+ D++E ++ G +KK + G A + F+
Sbjct: 3 LLVSNL------DFGVS-----DADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERK 51
Query: 694 EAADACRELLNGRWFGQRQITAE 716
A + NG R + +
Sbjct: 52 ADALKAMKQYNGVPLDGRPMNIQ 74
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 51.7 bits (123), Expect = 5e-09
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+++ NL ++ ++ + G+++ K+ DP T + KG A + ++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVIL-------QTPKIMRDPDTGNSKGYAFINFASFDA 53
Query: 278 VDLALSILDGYEIRGKKIKVERAK 301
D A+ ++G + + I V A
Sbjct: 54 SDAAIEAMNGQYLCNRPITVSYAF 77
Score = 51.7 bits (123), Expect = 5e-09
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
+++ NL ++ ++ + G+++ K+ DP T + KG A + ++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVIL-------QTPKIMRDPDTGNSKGYAFINFASFDA 53
Query: 563 VDLALSILDGYEIRGKKIKVERAK 586
D A+ ++G + + I V A
Sbjct: 54 SDAAIEAMNGQYLCNRPITVSYAF 77
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.6 bits (123), Expect = 6e-09
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+++VSN+P + ++ + G ++ + KG T+
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV----------EIIFNERGSKGFGFVTF 58
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
D A L G + G+KI+V A
Sbjct: 59 ENSADADRAREKLHGTVVEGRKIEVNNAT 87
Score = 50.8 bits (121), Expect = 1e-08
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+++VSN+P + ++ + G ++ + KG T+
Sbjct: 10 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV----------EIIFNERGSKGFGFVTFE 59
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
D A L G + G+KI+V A
Sbjct: 60 NSADADRAREKLHGTVVEGRKIEVNNAT 87
Score = 32.7 bits (74), Expect = 0.026
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH--DKHPEGVA 401
E + V N+ DLR+ + G + V + ++ +G
Sbjct: 6 ESKSTPKRLHVSNI------PFRFR-----DPDLRQMFGQFGKILDVEIIFNERGSKGFG 54
Query: 402 QIFFKEPEAADACRELLNGRWFGQRQITAE 431
+ F+ AD RE L+G R+I
Sbjct: 55 FVTFENSADADRAREKLHGTVVEGRKIEVN 84
Score = 32.7 bits (74), Expect = 0.026
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH--DKHPEGVA 686
E + V N+ DLR+ + G + V + ++ +G
Sbjct: 6 ESKSTPKRLHVSNI------PFRFR-----DPDLRQMFGQFGKILDVEIIFNERGSKGFG 54
Query: 687 QIFFKEPEAADACRELLNGRWFGQRQITAE 716
+ F+ AD RE L+G R+I
Sbjct: 55 FVTFENSADADRAREKLHGTVVEGRKIEVN 84
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.6 bits (123), Expect = 7e-09
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G E +++ +LP + ++ +++ G V+ + L +
Sbjct: 15 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF--------VS 66
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAK 301
Y S A+ ++G++I K++KV+ +
Sbjct: 67 YDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96
Score = 50.9 bits (121), Expect = 1e-08
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K+ E +++ +LP + ++ +++ G V+ + L
Sbjct: 13 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGF-------- 64
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+Y S A+ ++G++I K++KV+ +
Sbjct: 65 VSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 96
Score = 29.7 bits (66), Expect = 0.34
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ----IFF 405
+ + + +L ++ QDL + G+V + +++ + +
Sbjct: 19 ANLFIYHL------PQEFG-----DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 67
Query: 406 KEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 440
P +A A + +NG G +++ + K K
Sbjct: 68 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
Score = 29.7 bits (66), Expect = 0.34
Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 15/95 (15%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ----IFF 690
+ + + +L ++ QDL + G+V + +++ + +
Sbjct: 19 ANLFIYHL------PQEFG-----DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSY 67
Query: 691 KEPEAADACRELLNGRWFGQRQITAETWDGKTRYK 725
P +A A + +NG G +++ + K K
Sbjct: 68 DNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 51.2 bits (122), Expect = 7e-09
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+++ NL + + + G N + K+ D G +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDENGSKGYGF--VHFET 57
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
+E+ + A+ ++G + +K+ V R K
Sbjct: 58 QEAAERAIEKMNGMLLNDRKVFVGRFK 84
Score = 51.2 bits (122), Expect = 8e-09
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
+++ NL + + + G N + K+ D G +
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFG--------NILSCKVVCDENGSKGYGF--VHFET 57
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
+E+ + A+ ++G + +K+ V R K
Sbjct: 58 QEAAERAIEKMNGMLLNDRKVFVGRFK 84
Score = 38.1 bits (88), Expect = 3e-04
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQ 402
R I +KNL DK + + L + S G++ KVV + +G
Sbjct: 4 RKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGF 52
Query: 403 IFFKEPEAADACRELLNGRWFGQRQITAE 431
+ F+ EAA+ E +NG R++
Sbjct: 53 VHFETQEAAERAIEKMNGMLLNDRKVFVG 81
Score = 38.1 bits (88), Expect = 3e-04
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVK--KVVLHDKHPEGVAQ 687
R I +KNL DK + + L + S G++ KVV + +G
Sbjct: 4 RKSGVGNIFIKNL------DKSID-----NKALYDTFSAFGNILSCKVVCDENGSKGYGF 52
Query: 688 IFFKEPEAADACRELLNGRWFGQRQITAE 716
+ F+ EAA+ E +NG R++
Sbjct: 53 VHFETQEAAERAIEKMNGMLLNDRKVFVG 81
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.7 bits (123), Expect = 7e-09
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 207 KWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKG 266
++ GE + +Y+ NL +T+ + V + + + T +G
Sbjct: 10 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRG 61
Query: 267 DALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
A T+ KE AL +++GY++ GK + +E K
Sbjct: 62 QAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 96
Score = 48.2 bits (114), Expect = 1e-07
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N +Y+ NL +T+ + V + + + T +G A T+
Sbjct: 18 NKVLYLKNLSPRVTERDLVSLFARFQEKKG--------PPIQFRMMTGRMRGQAFITFPN 69
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
KE AL +++GY++ GK + +E K
Sbjct: 70 KEIAWQALHLVNGYKLYGKILVIEFGK 96
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 50.2 bits (119), Expect = 2e-08
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
Q+N V+V L L E ++ + G K Y A TY
Sbjct: 7 QKNL-VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ--GPSASAYVTY 63
Query: 558 IKKESVDLALSILDGYEIRGKKIKV 582
I+ E A+ ++ + G+ +K
Sbjct: 64 IRSEDALRAIQCVNNVVVDGRTLKA 88
Score = 50.2 bits (119), Expect = 2e-08
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
+ V+V L L E ++ + G K Y A TYI
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQ--GPSASAYVTYI 64
Query: 274 KKESVDLALSILDGYEIRGKKIKV 297
+ E A+ ++ + G+ +K
Sbjct: 65 RSEDALRAIQCVNNVVVDGRTLKA 88
Score = 30.6 bits (68), Expect = 0.13
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 345 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-------HDKHP 397
R ++++ V L + + E K G + KVV+ + P
Sbjct: 4 RVVQKNLVFVVGL------SQRLAD--PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGP 55
Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITA 430
A + + E A + +N R + A
Sbjct: 56 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 88
Score = 30.6 bits (68), Expect = 0.13
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 15/93 (16%)
Query: 630 RSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL-------HDKHP 682
R ++++ V L + + E K G + KVV+ + P
Sbjct: 4 RVVQKNLVFVVGL------SQRLAD--PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGP 55
Query: 683 EGVAQIFFKEPEAADACRELLNGRWFGQRQITA 715
A + + E A + +N R + A
Sbjct: 56 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKA 88
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.5 bits (120), Expect = 2e-08
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 8/89 (8%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
V+V N+P + T+E+ ++ + + +L D T KG C Y
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEV--------GPVVSFRLVYDRETGKPKGYGFCEY 57
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+E+ A+ L+G E G+ ++V+ A
Sbjct: 58 QDQETALSAMRNLNGREFSGRALRVDNAA 86
Score = 50.5 bits (120), Expect = 2e-08
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ V+V N+P + T+E+ ++ + + +L D T KG C Y
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEV--------GPVVSFRLVYDRETGKPKGYGFCEY 57
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
+E+ A+ L+G E G+ ++V+ A
Sbjct: 58 QDQETALSAMRNLNGREFSGRALRVDNAA 86
Score = 30.1 bits (67), Expect = 0.31
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGH----VKKVVLH 393
P R RS + V N+ + T ++ L++ S+ G
Sbjct: 2 PAVDRSLRS-----VFVGNI------PYEAT-----EEQLKDIFSEVGPVVSFRLVYDRE 45
Query: 394 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
P+G +++ E A + LNGR F R + +
Sbjct: 46 TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83
Score = 30.1 bits (67), Expect = 0.31
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 20/98 (20%)
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGH----VKKVVLH 678
P R RS + V N+ + T ++ L++ S+ G
Sbjct: 2 PAVDRSLRS-----VFVGNI------PYEAT-----EEQLKDIFSEVGPVVSFRLVYDRE 45
Query: 679 DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
P+G +++ E A + LNGR F R + +
Sbjct: 46 TGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.5 bits (120), Expect = 2e-08
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 18/105 (17%)
Query: 197 PGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 256
G + PP ++ NLP D+T+E E +
Sbjct: 6 SGSRLPKSPPY---------TAFLGNLPYDVTEESIKEFFRGL--------NISAVRLPR 48
Query: 257 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ KG + +S+ ALS L+ + K+I+V+ A
Sbjct: 49 EPSNPERLKGFGYAEFEDLDSLLSALS-LNEESLGNKRIRVDVAD 92
Score = 48.6 bits (115), Expect = 9e-08
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
++ NLP D+T+E E + + KG +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGL--------NISAVRLPREPSNPERLKGFGYAEFED 66
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
+S+ ALS L+ + K+I+V+ A
Sbjct: 67 LDSLLSALS-LNEESLGNKRIRVDVAD 92
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 50.0 bits (119), Expect = 3e-08
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 14/92 (15%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
+ + +N VY + LT + + G + ++ K Y +
Sbjct: 13 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFG---QIMEIRVFPEKGY-----------SF 58
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ ES A+ ++G I G +K K
Sbjct: 59 VRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 90
Score = 48.4 bits (115), Expect = 8e-08
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 14/88 (15%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
++ VY + LT + + G + ++ K Y + +
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFG---QIMEIRVFPEKGY-----------SFVRFS 62
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
ES A+ ++G I G +K K
Sbjct: 63 THESAAHAIVSVNGTTIEGHVVKCYWGK 90
Score = 38.0 bits (88), Expect = 4e-04
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 337 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 396
R + + + S + + +T Q +R+ S G + ++ + +
Sbjct: 6 RFEDVVNQSSPKNCTVYCGGI------ASGLT-----DQLMRQTFSPFGQIMEIRVFPEK 54
Query: 397 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
+ + F E+A +NG +
Sbjct: 55 G--YSFVRFSTHESAAHAIVSVNGTTIEGHVV 84
Score = 38.0 bits (88), Expect = 4e-04
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 13/92 (14%)
Query: 622 RPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH 681
R + + + S + + +T Q +R+ S G + ++ + +
Sbjct: 6 RFEDVVNQSSPKNCTVYCGGI------ASGLT-----DQLMRQTFSPFGQIMEIRVFPEK 54
Query: 682 PEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
+ + F E+A +NG +
Sbjct: 55 G--YSFVRFSTHESAAHAIVSVNGTTIEGHVV 84
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 49.3 bits (117), Expect = 3e-08
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K+Y+ NL +T ++ ++ L G A Y +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLP--------------LAGQVLLKSGYAFVDYPDQN 48
Query: 277 SVDLALSILDG-YEIRGKKIKVERAK 301
A+ L G E+ GK ++V+ +
Sbjct: 49 WAIRAIETLSGKVELHGKIMEVDYSV 74
Score = 49.3 bits (117), Expect = 3e-08
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 15/86 (17%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+Y+ NL +T ++ ++ L G A Y +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLP--------------LAGQVLLKSGYAFVDYPDQN 48
Query: 562 SVDLALSILDG-YEIRGKKIKVERAK 586
A+ L G E+ GK ++V+ +
Sbjct: 49 WAIRAIETLSGKVELHGKIMEVDYSV 74
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 49.7 bits (118), Expect = 3e-08
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ N +Y++NL + ++E + + + + +I + +G A +
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSL-------HAIFSRFGQILDILVSRSLKMRGQAFVIF 53
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
+ S AL + G+ K ++++ AK
Sbjct: 54 KEVSSATNALRSMQGFPFYDKPMRIQYAK 82
Score = 49.3 bits (117), Expect = 4e-08
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+ +Y++NL + ++E + + + + +I + +G A + +
Sbjct: 3 NHTIYINNLNEKIKKDELKKSL-------HAIFSRFGQILDILVSRSLKMRGQAFVIFKE 55
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
S AL + G+ K ++++ AK
Sbjct: 56 VSSATNALRSMQGFPFYDKPMRIQYAK 82
Score = 30.4 bits (68), Expect = 0.18
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 16/86 (18%)
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSK-----CGHVKKVVLHDKHPEGVAQIFF 405
I + NL ++ + + +L++ + +V G A + F
Sbjct: 5 TIYINNL------NEKIK-----KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIF 53
Query: 406 KEPEAADACRELLNGRWFGQRQITAE 431
KE +A + G F + + +
Sbjct: 54 KEVSSATNALRSMQGFPFYDKPMRIQ 79
Score = 30.4 bits (68), Expect = 0.18
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 16/86 (18%)
Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSK-----CGHVKKVVLHDKHPEGVAQIFF 690
I + NL ++ + + +L++ + +V G A + F
Sbjct: 5 TIYINNL------NEKIK-----KDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIF 53
Query: 691 KEPEAADACRELLNGRWFGQRQITAE 716
KE +A + G F + + +
Sbjct: 54 KEVSSATNALRSMQGFPFYDKPMRIQ 79
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 48.6 bits (115), Expect = 5e-08
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 8/87 (9%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
++++N P TQ +++Q +V + ++
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAY--------IDVTS 52
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
KE + L+G +I G + + +
Sbjct: 53 KEDARYCVEKLNGLKIEGYTLVTKVSN 79
Score = 47.5 bits (112), Expect = 1e-07
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
++++N P TQ +++Q +V + ++ K
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAY--------IDVTSK 53
Query: 276 ESVDLALSILDGYEIRGKKIKVERAK 301
E + L+G +I G + + +
Sbjct: 54 EDARYCVEKLNGLKIEGYTLVTKVSN 79
Score = 32.1 bits (72), Expect = 0.033
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 349 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIF 404
E + + N T Q+++R+ V + A I
Sbjct: 1 ECTLWMTNF------PPSYT-----QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYID 49
Query: 405 FKEPEAADACRELLNGRWFGQRQITAE 431
E A C E LNG + +
Sbjct: 50 VTSKEDARYCVEKLNGLKIEGYTLVTK 76
Score = 32.1 bits (72), Expect = 0.033
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 15/87 (17%)
Query: 634 ESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKH----PEGVAQIF 689
E + + N T Q+++R+ V + A I
Sbjct: 1 ECTLWMTNF------PPSYT-----QRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYID 49
Query: 690 FKEPEAADACRELLNGRWFGQRQITAE 716
E A C E LNG + +
Sbjct: 50 VTSKEDARYCVEKLNGLKIEGYTLVTK 76
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 48.9 bits (116), Expect = 5e-08
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 10/88 (11%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+ +YV NL D+T+ +++ + G +
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIG----------PCKSCKMITEHTSNDPYCFVEFY 56
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
+ AL+ ++G +I GK++KV A
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNWAT 84
Score = 48.5 bits (115), Expect = 7e-08
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+ +YV NL D+T+ +++ + G +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIG----------PCKSCKMITEHTSNDPYCFVEF 55
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ AL+ ++G +I GK++KV A
Sbjct: 56 YEHRDAAAALAAMNGRKILGKEVKVNWAT 84
Score = 35.0 bits (80), Expect = 0.004
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 403
E + V NL +DVT + + + S+ G K + +H
Sbjct: 3 EDDGQPRTLYVGNL------SRDVT-----EVLILQLFSQIGPCKSCKMITEHTSNDPYC 51
Query: 404 F--FKEPEAADACRELLNGRWFGQRQI 428
F F E A A +NGR +++
Sbjct: 52 FVEFYEHRDAAAALAAMNGRKILGKEV 78
Score = 35.0 bits (80), Expect = 0.004
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 13/87 (14%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQI 688
E + V NL +DVT + + + S+ G K + +H
Sbjct: 3 EDDGQPRTLYVGNL------SRDVT-----EVLILQLFSQIGPCKSCKMITEHTSNDPYC 51
Query: 689 F--FKEPEAADACRELLNGRWFGQRQI 713
F F E A A +NGR +++
Sbjct: 52 FVEFYEHRDAAAALAAMNGRKILGKEV 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 49.2 bits (117), Expect = 6e-08
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
++ V NL +T + ++ K G V+K + + + AL Y
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN------------QFQALLQYADP 55
Query: 276 ESVDLALSILDGYEI--RGKKIKVERAK 301
S A LDG I ++++ +K
Sbjct: 56 VSAQHAKLSLDGQNIYNACCTLRIDFSK 83
Score = 49.2 bits (117), Expect = 6e-08
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 14/88 (15%)
Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
++ V NL +T + ++ K G V+K + + + AL Y
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNN------------QFQALLQYADP 55
Query: 561 ESVDLALSILDGYEI--RGKKIKVERAK 586
S A LDG I ++++ +K
Sbjct: 56 VSAQHAKLSLDGQNIYNACCTLRIDFSK 83
Score = 40.8 bits (95), Expect = 5e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 411
IIV+NL VT L + SK G V K++ K+ + A + + +P +A
Sbjct: 10 IIVENL------FYPVT-----LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58
Query: 412 DACRELLNGRWFGQRQIT 429
+ L+G+ T
Sbjct: 59 QHAKLSLDGQNIYNACCT 76
Score = 40.8 bits (95), Expect = 5e-05
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAA 696
IIV+NL VT L + SK G V K++ K+ + A + + +P +A
Sbjct: 10 IIVENL------FYPVT-----LDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSA 58
Query: 697 DACRELLNGRWFGQRQIT 714
+ L+G+ T
Sbjct: 59 QHAKLSLDGQNIYNACCT 76
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 48.0 bits (114), Expect = 7e-08
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K++V L D +E+ E G I+L D T +G T+ ++E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEE 52
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
V + + + K +++ A
Sbjct: 53 PVKKIME-KKYHNVGLSKCEIKVA 75
Score = 48.0 bits (114), Expect = 7e-08
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K++V L D +E+ E G I+L D T +G T+ ++E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFG--------EVESIELPMDNKTNKRRGFCFITFKEEE 52
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
V + + + K +++ A
Sbjct: 53 PVKKIME-KKYHNVGLSKCEIKVA 75
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 48.2 bits (114), Expect = 8e-08
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
E ++ + NL +L E + + + + A +
Sbjct: 3 EGREIMIRNLSTELLDENLLRES------FEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 56
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
K+S + AL ++ + ++I V A
Sbjct: 57 NKDSAERALQ-MNRSLLGNREISVSLAD 83
Score = 48.2 bits (114), Expect = 1e-07
Identities = 13/88 (14%), Positives = 29/88 (32%), Gaps = 7/88 (7%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
E ++ + NL +L E + + + + A +
Sbjct: 3 EGREIMIRNLSTELLDENLLRES------FEGFGSIEKINIPAGQKEHSFNNCCAFMVFE 56
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
K+S + AL ++ + ++I V A
Sbjct: 57 NKDSAERALQ-MNRSLLGNREISVSLAD 83
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 47.7 bits (113), Expect = 9e-08
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K+++ L D T+++ + K + L DP T +G + + E
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKF--------GEVVDCTLKLDPITGRSRGFGFVLFKESE 52
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
SVD + +++ GK I +RA
Sbjct: 53 SVDKVMD-QKEHKLNGKVIDPKRA 75
Score = 47.7 bits (113), Expect = 9e-08
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K+++ L D T+++ + K + L DP T +G + + E
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKF--------GEVVDCTLKLDPITGRSRGFGFVLFKESE 52
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
SVD + +++ GK I +RA
Sbjct: 53 SVDKVMD-QKEHKLNGKVIDPKRA 75
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 48.6 bits (115), Expect = 1e-07
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
+K TK++V LP T + + + + + TD T +G
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGF--------GDIEEAVVITDRQTGKSRGYGF 56
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKR 604
T + + + A + I G+K V A KP+ +
Sbjct: 57 VTMADRAAAERACKDPNP-IIDGRKANVNLAY---------LGAKPRSLQ 96
Score = 47.0 bits (111), Expect = 3e-07
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 18/104 (17%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
TK++V LP T + + + + + TD T +G T +
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGF--------GDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 276 ESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKR 319
+ + A + I G+K V A KP+ +
Sbjct: 63 AAAERACKDPNP-IIDGRKANVNLAY---------LGAKPRSLQ 96
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 48.3 bits (114), Expect = 1e-07
Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
E V++ NL D +E EV+Q+ + +++ P T+ KG A
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQF--------GDLKYVRVVLHPDTEHSKGCAF 54
Query: 555 CTYIKKESVDLALSIL------DGYEIRGKKIKVERAK 586
++ +E+ L+ G ++ G+++KV+ A
Sbjct: 55 AQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
Score = 47.1 bits (111), Expect = 2e-07
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E V++ NL D +E EV+Q+ + +++ P T+ KG A +
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQF--------GDLKYVRVVLHPDTEHSKGCAFAQF 57
Query: 273 IKKESVDLALSIL------DGYEIRGKKIKVERAK 301
+ +E+ L+ G ++ G+++KV+ A
Sbjct: 58 MTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAV 92
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 47.7 bits (113), Expect = 1e-07
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
+ +YVS LP +TQ+E ++ + G + + + + ++ F + K
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRGVGF-----IRFDK 57
Query: 560 KESVDLALSILDGYEIRG--KKIKVERA 585
+ + A+ L+G + G + I V+ A
Sbjct: 58 RIEAEEAIKGLNGQKPSGATEPITVKFA 85
Score = 45.8 bits (108), Expect = 5e-07
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
+YVS LP +TQ+E ++ + G + + + + ++ F + K+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYG---RIITSRILVDQVTGVSRGVGF-----IRFDKR 58
Query: 276 ESVDLALSILDGYEIRG--KKIKVERA 300
+ A+ L+G + G + I V+ A
Sbjct: 59 IEAEEAIKGLNGQKPSGATEPITVKFA 85
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 48.3 bits (114), Expect = 1e-07
Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D+ +++N+P +T+ + ++ ++ + V G AL
Sbjct: 3 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH--------VLVDNNGQGLGQAL 54
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ ++ + L ++ G++ V
Sbjct: 55 VQFKNEDDARKSER-LHRKKLNGREAFVHVVT 85
Score = 46.0 bits (108), Expect = 9e-07
Identities = 10/88 (11%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
+++N+P +T+ + ++ ++ + V G AL +
Sbjct: 7 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVH--------VLVDNNGQGLGQALVQFK 58
Query: 559 KKESVDLALSILDGYEIRGKKIKVERAK 586
++ + L ++ G++ V
Sbjct: 59 NEDDARKSER-LHRKKLNGREAFVHVVT 85
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 47.3 bits (112), Expect = 2e-07
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
S+ V+V D+T++E E + G + M + + F T+
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKPFRAFAF-----VTFAD 51
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
+ + I+G + + A+
Sbjct: 52 DQIAQSL--CGEDLIIKGISVHISNAE 76
Score = 46.2 bits (109), Expect = 4e-07
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 15/87 (17%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
++ V+V D+T++E E + G + M + + F T+
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYG--------DVMDVFIPKPFRAFAF-----VTFAD 51
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
+ + I+G + + A+
Sbjct: 52 DQIAQSL--CGEDLIIKGISVHISNAE 76
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 46.6 bits (110), Expect = 2e-07
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K++V L ++ T E+ ++ G L D T +G T+ ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESED 52
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
V+ + +EI K ++ ++A
Sbjct: 53 IVEKVCE-IHFHEINNKMVECKKA 75
Score = 46.6 bits (110), Expect = 2e-07
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K++V L ++ T E+ ++ G L D T +G T+ ++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFG--------KVDDAMLMFDKTTNRHRGFGFVTFESED 52
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
V+ + +EI K ++ ++A
Sbjct: 53 IVEKVCE-IHFHEINNKMVECKKA 75
Score = 28.5 bits (63), Expect = 0.53
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKE 407
I V L + T +D++ + G V +L G + F+
Sbjct: 2 IFVGGL------SVNTT-----VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50
Query: 408 PEAADACRELLNGRWFGQRQIT 429
+ + E ++ + +
Sbjct: 51 EDIVEKVCE-IHFHEINNKMVE 71
Score = 28.5 bits (63), Expect = 0.53
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLH----DKHPEGVAQIFFKE 692
I V L + T +D++ + G V +L G + F+
Sbjct: 2 IFVGGL------SVNTT-----VEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES 50
Query: 693 PEAADACRELLNGRWFGQRQIT 714
+ + E ++ + +
Sbjct: 51 EDIVEKVCE-IHFHEINNKMVE 71
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 47.3 bits (112), Expect = 2e-07
Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 483 PKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 542
P ++ +L + ++ V+ L + + + G V +++ +
Sbjct: 3 PVREPVDNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKV--------RDVRIIS 52
Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
D ++ KG A + + +SV LA+ L G + G I V+ ++
Sbjct: 53 DRNSRRSKGIAYVEFCEIQSVPLAIG-LTGQRLLGVPIIVQASQ 95
Score = 46.2 bits (109), Expect = 6e-07
Identities = 17/89 (19%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++ V+ L + + + G V +++ +D ++ KG A +
Sbjct: 16 RDARTVFCMQLAARIRPRDLEDFFSAVGKV--------RDVRIISDRNSRRSKGIAYVEF 67
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ +SV LA+ L G + G I V+ ++
Sbjct: 68 CEIQSVPLAIG-LTGQRLLGVPIIVQASQ 95
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 46.6 bits (110), Expect = 3e-07
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E+ K+++ L + T E ++ + DP TK +G TY
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQW--------GTLTDCVVMRDPNTKRSRGFGFVTY 55
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERA 300
E VD A++ +++ G+ ++ +RA
Sbjct: 56 ATVEEVDAAMN-ARPHKVDGRVVEPKRA 82
Score = 46.2 bits (109), Expect = 5e-07
Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K+ ++ K+++ L + T E ++ + DP TK +G
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQW--------GTLTDCVVMRDPNTKRSRGFGF 52
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERA 585
TY E VD A++ +++ G+ ++ +RA
Sbjct: 53 VTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 82
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 47.4 bits (112), Expect = 3e-07
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N+ + VSNL + + + L D ++KI AL
Sbjct: 2 NSVLLVSNLNPERVTPQSLF-----ILFGVYGDVQRVKILFNKKEN-------ALVQMAD 49
Query: 560 KESVDLALSILDGYEIRGKKIKVERAK 586
LA+S L+G+++ GK I++ +K
Sbjct: 50 GNQAQLAMSHLNGHKLHGKPIRITLSK 76
Score = 46.7 bits (110), Expect = 5e-07
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
++ + VSNL + + + L D ++KI AL
Sbjct: 2 NSVLLVSNLNPERVTPQSLF-----ILFGVYGDVQRVKILFNKKEN-------ALVQMAD 49
Query: 275 KESVDLALSILDGYEIRGKKIKVERAK 301
LA+S L+G+++ GK I++ +K
Sbjct: 50 GNQAQLAMSHLNGHKLHGKPIRITLSK 76
Score = 32.0 bits (72), Expect = 0.057
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 350 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 409
SV++V NL +P L G V++V + E A + +
Sbjct: 3 SVLLVSNL-NPERVTPQ---------SLFILFGVYGDVQRVKILFNKKE-NALVQMADGN 51
Query: 410 AADACRELLNGRWFGQRQITAE 431
A LNG + I
Sbjct: 52 QAQLAMSHLNGHKLHGKPIRIT 73
Score = 32.0 bits (72), Expect = 0.057
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 11/82 (13%)
Query: 635 SVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPE 694
SV++V NL +P L G V++V + E A + +
Sbjct: 3 SVLLVSNL-NPERVTPQ---------SLFILFGVYGDVQRVKILFNKKE-NALVQMADGN 51
Query: 695 AADACRELLNGRWFGQRQITAE 716
A LNG + I
Sbjct: 52 QAQLAMSHLNGHKLHGKPIRIT 73
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 47.1 bits (111), Expect = 3e-07
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ + +V VS LP + ++ + M++ G V + Y
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM---------------GMVEY 57
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
++KE ++ AL LD + R + + +
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEGETSYIR 86
Score = 46.3 bits (109), Expect = 4e-07
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 15/89 (16%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+V VS LP + ++ + M++ G V + Y
Sbjct: 13 RSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGM---------------GMVEY 57
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
++KE ++ AL LD + R + + +
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEGETSYIR 86
Score = 32.1 bits (72), Expect = 0.058
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 346 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 405
+++ ++V L + QDL++ + G V D +G+ + +
Sbjct: 12 RRSDFRVLVSGL------PPSGS-----WQDLKDHMREAGDVCY---ADVQKDGMGMVEY 57
Query: 406 KEPEAADACRELLNGRWFGQRQI 428
E + L+ F +
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEG 80
Score = 32.1 bits (72), Expect = 0.058
Identities = 12/83 (14%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 631 SKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFF 690
+++ ++V L + QDL++ + G V D +G+ + +
Sbjct: 12 RRSDFRVLVSGL------PPSGS-----WQDLKDHMREAGDVCY---ADVQKDGMGMVEY 57
Query: 691 KEPEAADACRELLNGRWFGQRQI 713
E + L+ F +
Sbjct: 58 LRKEDMEYALRKLDDTKFRSHEG 80
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 47.0 bits (111), Expect = 3e-07
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 16/93 (17%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
KA T+++V L + + + G + A
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF--------------AYI 58
Query: 556 TYIKKESVDLALSILDGYEIRG--KKIKVERAK 586
Y ++ A + + G+ + G ++++V+ AK
Sbjct: 59 QYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91
Score = 45.4 bits (107), Expect = 9e-07
Identities = 12/89 (13%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+T+++V L + + + G + A Y
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSF--------------AYIQYES 62
Query: 275 KESVDLALSILDGYEIRG--KKIKVERAK 301
++ A + + G+ + G ++++V+ AK
Sbjct: 63 LDAAQAACAKMRGFPLGGPDRRLRVDFAK 91
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 46.2 bits (109), Expect = 4e-07
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 14/92 (15%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
D +YV NL L ++E + K + A
Sbjct: 3 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--------------AVERVKKIRDYAF 48
Query: 270 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ +E A+ L+G + G I+V AK
Sbjct: 49 VHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 80
Score = 43.9 bits (103), Expect = 3e-06
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 14/89 (15%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+YV NL L ++E + K + A +
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPG--------------AVERVKKIRDYAFVHF 51
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
+E A+ L+G + G I+V AK
Sbjct: 52 SNREDAVEAMKALNGKVLDGSPIEVTLAK 80
Score = 26.1 bits (57), Expect = 5.3
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 338 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 397
D M + ++ V+NL + ++ + +E + + K
Sbjct: 2 EDTMSSVK-----ILYVRNL------MLSTS-----EEMIEKEFNNIKPGAVERV--KKI 43
Query: 398 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 431
A + F E A + LNG+ I
Sbjct: 44 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 77
Score = 26.1 bits (57), Expect = 5.3
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 623 PDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHP 682
D M + ++ V+NL + ++ + +E + + K
Sbjct: 2 EDTMSSVK-----ILYVRNL------MLSTS-----EEMIEKEFNNIKPGAVERV--KKI 43
Query: 683 EGVAQIFFKEPEAADACRELLNGRWFGQRQITAE 716
A + F E A + LNG+ I
Sbjct: 44 RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 77
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 45.9 bits (108), Expect = 5e-07
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
K++V + D + + ++ I++ TD + +G A T+ +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQY--------GKIEVIEIMTDRGSGKKRGFAFVTFDDHD 55
Query: 277 SVDLALSILDGYEIRGKKIKVERA 300
SVD + + + G +V +A
Sbjct: 56 SVDKIVI-QKYHTVNGHNCEVRKA 78
Score = 45.9 bits (108), Expect = 5e-07
Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
K++V + D + + ++ I++ TD + +G A T+ +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQY--------GKIEVIEIMTDRGSGKKRGFAFVTFDDHD 55
Query: 562 SVDLALSILDGYEIRGKKIKVERA 585
SVD + + + G +V +A
Sbjct: 56 SVDKIVI-QKYHTVNGHNCEVRKA 78
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 46.4 bits (109), Expect = 6e-07
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
V + LP ++EE V+ +V + + G+A +
Sbjct: 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--------LPVDFQGRSTGEAFVQF 64
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+E + AL I + I++ ++
Sbjct: 65 ASQEIAEKAL-KKHKERIGHRYIEIFKSS 92
Score = 46.4 bits (109), Expect = 6e-07
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
+ V + LP ++EE V+ +V + + G+A
Sbjct: 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMT--------LPVDFQGRSTGEAF 61
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ +E + AL I + I++ ++
Sbjct: 62 VQFASQEIAEKAL-KKHKERIGHRYIEIFKSS 92
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 46.3 bits (109), Expect = 6e-07
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
++ Q+ T +Y+SNLPL + ++E +++ G V+ +
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF--------- 63
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
E + + +G I+ +
Sbjct: 64 ARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95
Score = 45.5 bits (107), Expect = 9e-07
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++ T +Y+SNLPL + ++E +++ G V+ +
Sbjct: 16 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF---------ARM 66
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
E + + +G I+ +
Sbjct: 67 ESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 45.9 bits (108), Expect = 7e-07
Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 11/91 (12%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
++ V++ LP T+ + G+A
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLN----------PMRVHIEIGPDGRVTGEADV 60
Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ E A++ D ++ + +++
Sbjct: 61 EFATHEDAVAAMA-KDKANMQHRYVELFLNS 90
Score = 45.1 bits (106), Expect = 1e-06
Identities = 9/88 (10%), Positives = 23/88 (26%), Gaps = 11/88 (12%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
V++ LP T+ + G+A +
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLN----------PMRVHIEIGPDGRVTGEADVEFA 63
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
E A++ D ++ + +++
Sbjct: 64 THEDAVAAMA-KDKANMQHRYVELFLNS 90
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 45.0 bits (106), Expect = 1e-06
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
++++ + V LP T+++ E + +++ D T KG +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTF--------GEVLMVQVKKDLKTGHSKGFGFVRF 57
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
+ E+ +S + I G+ +
Sbjct: 58 TEYETQVKVMS--QRHMIDGRWCDCKLPN 84
Score = 45.0 bits (106), Expect = 1e-06
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 10/92 (10%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
+ Q+ + + V LP T+++ E + +++ D T KG
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTF--------GEVLMVQVKKDLKTGHSKGFGF 54
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + E+ +S + I G+ +
Sbjct: 55 VRFTEYETQVKVMS--QRHMIDGRWCDCKLPN 84
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 44.0 bits (103), Expect = 2e-06
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+Y+ L T ++ V++ Q + K D T KG + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY--------GKIVSTKAILDKTTNKCKGYGFVDFDSPSA 52
Query: 278 VDLALSILDGYEIRGKKIK 296
A++ L ++ + K
Sbjct: 53 AQKAVTALKASGVQAQMAK 71
Score = 44.0 bits (103), Expect = 2e-06
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 8/79 (10%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
+Y+ L T ++ V++ Q + K D T KG + +
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY--------GKIVSTKAILDKTTNKCKGYGFVDFDSPSA 52
Query: 563 VDLALSILDGYEIRGKKIK 581
A++ L ++ + K
Sbjct: 53 AQKAVTALKASGVQAQMAK 71
Score = 29.3 bits (65), Expect = 0.29
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 352 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKK----VVLHDKHPEGVAQIFFKE 407
+ ++ L T QDL + C G + + +G + F
Sbjct: 1 LYIRGL------QPGTT-----DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 49
Query: 408 PEAADACRELLNGRWFGQRQI 428
P AA L +
Sbjct: 50 PSAAQKAVTALKASGVQAQMA 70
Score = 29.3 bits (65), Expect = 0.29
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 15/81 (18%)
Query: 637 IIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKK----VVLHDKHPEGVAQIFFKE 692
+ ++ L T QDL + C G + + +G + F
Sbjct: 1 LYIRGL------QPGTT-----DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDS 49
Query: 693 PEAADACRELLNGRWFGQRQI 713
P AA L +
Sbjct: 50 PSAAQKAVTALKASGVQAQMA 70
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 44.6 bits (104), Expect = 3e-06
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 14/115 (12%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
+ T + NLP E E + + A+
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRF--------------GSLGRVLLPEGGITAIV 51
Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEK 610
+++ A L + + +E A + G A K ++ + E
Sbjct: 52 EFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAES 106
Score = 43.4 bits (101), Expect = 8e-06
Identities = 16/114 (14%), Positives = 30/114 (26%), Gaps = 14/114 (12%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G T + NLP E E + + A+
Sbjct: 7 GRSKTVILAKNLPAGTLAAEIQETFSRF--------------GSLGRVLLPEGGITAIVE 52
Query: 272 YIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEK 325
+++ A L + + +E A + G A K ++ + E
Sbjct: 53 FLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAES 106
Score = 28.4 bits (62), Expect = 1.3
Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 24/131 (18%)
Query: 628 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 687
G ++++VI+ KNL +++E S+ G + +V A
Sbjct: 4 GSSGRSKTVILAKNL------PAGTL-----AAEIQETFSRFGSLGRV--LLPEGGITAI 50
Query: 688 IFFKEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEEREARLKKWETFLEEE 747
+ F EP A L F + E + + + E+
Sbjct: 51 VEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQ-----------HEQ 99
Query: 748 DKKKKEAGKGS 758
+K E+G S
Sbjct: 100 PAEKAESGPSS 110
Score = 28.0 bits (61), Expect = 2.0
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 343 GERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQ 402
G ++++VI+ KNL +++E S+ G + +V A
Sbjct: 4 GSSGRSKTVILAKNL------PAGTL-----AAEIQETFSRFGSLGRV--LLPEGGITAI 50
Query: 403 IFFKEPEAADACRELLNGRWFGQRQITAE-TWDGKTRYKIQETAEEREARLKKWET 457
+ F EP A L F + E G Q+ + E +K E+
Sbjct: 51 VEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAES 106
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 43.1 bits (101), Expect = 4e-06
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 16/89 (17%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+ +YV D+T D + A TY
Sbjct: 3 RKGNTLYVYGE--DMTPTLLRGAFSPF--------------GNIIDLSMDPPRNCAFVTY 46
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
K ES D A++ L+G ++ ++KV A+
Sbjct: 47 EKMESADQAVAELNGTQVESVQLKVNIAR 75
Score = 43.1 bits (101), Expect = 4e-06
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
++ +YV D+T D + A TY
Sbjct: 3 RKGNTLYVYGE--DMTPTLLRGAFSPF--------------GNIIDLSMDPPRNCAFVTY 46
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
K ES D A++ L+G ++ ++KV A+
Sbjct: 47 EKMESADQAVAELNGTQVESVQLKVNIAR 75
Score = 30.0 bits (67), Expect = 0.17
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 374 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 428
LR S G++ + P A + +++ E+AD LNG Q+
Sbjct: 17 PTLLRGAFSPFGNIIDL--SMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 69
Score = 30.0 bits (67), Expect = 0.17
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 659 QQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQI 713
LR S G++ + P A + +++ E+AD LNG Q+
Sbjct: 17 PTLLRGAFSPFGNIIDL--SMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQL 69
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 42.2 bits (98), Expect = 1e-05
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 10/89 (11%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
+++ NL + + E + + D T + +
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTGTNRKFGYVDF 61
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAK 301
E ++ AL L G ++ G +IK+E+ K
Sbjct: 62 ESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89
Score = 41.9 bits (97), Expect = 2e-05
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
++ +++ NL + + E + + D T +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAK---------NDLAVVDVRTGTNRKFGYV 59
Query: 556 TYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ E ++ AL L G ++ G +IK+E+ K
Sbjct: 60 DFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.0 bits (98), Expect = 1e-05
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 13/96 (13%)
Query: 210 DIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 269
+I S +++SN+P +++E+ + G V+K Q + AL
Sbjct: 5 NIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------------DRKMAL 52
Query: 270 CTYIKKESVDLALSILDGYEI-RGKKIKVERAKFTM 304
E AL L +++ ++V +K T+
Sbjct: 53 IQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 88
Score = 40.9 bits (95), Expect = 4e-05
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
+ +++SN+P +++E+ + G V+K Q + AL
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK------------DRKMALIQMGS 57
Query: 560 KESVDLALSILDGYEI-RGKKIKVERAKFTM 589
E AL L +++ ++V +K T+
Sbjct: 58 VEEAVQALIDLHNHDLGENHHLRVSFSKSTI 88
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 41.8 bits (97), Expect = 1e-05
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 217 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 276
+V VS LP + ++ + M++ G V +++KE
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV---------------VEFVRKE 46
Query: 277 SVDLALSILDGYEIRGKKIKVERAK 301
+ A+ LD + R + + +
Sbjct: 47 DMTYAVRKLDNTKFRSHEGETAYIR 71
Score = 41.8 bits (97), Expect = 1e-05
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 15/85 (17%)
Query: 502 KVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKE 561
+V VS LP + ++ + M++ G V +++KE
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV---------------VEFVRKE 46
Query: 562 SVDLALSILDGYEIRGKKIKVERAK 586
+ A+ LD + R + + +
Sbjct: 47 DMTYAVRKLDNTKFRSHEGETAYIR 71
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 43.5 bits (101), Expect = 2e-05
Identities = 25/168 (14%), Positives = 56/168 (33%), Gaps = 13/168 (7%)
Query: 138 PKVDDDFLARYQMSYGFIEQPNTVDEKKPSADLVQSKVEEKSVD----ATAPMENPKAEE 193
+ D+ L + +G + + + V +V+ A +
Sbjct: 16 FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGR 75
Query: 194 KVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKI 253
V P + E + K++V + D + + ++ G + I
Sbjct: 76 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------I 127
Query: 254 KLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
++ TD + +G A T+ +SVD + + + G +V +A
Sbjct: 128 EIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL 174
Score = 41.5 bits (96), Expect = 9e-05
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
K++V + D + + ++ G + I++ TD + +G A T+
Sbjct: 95 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IEIMTDRGSGKKRGFAFVTF 146
Query: 558 IKKESVDLALSILDGYEIRGKKIKVERAK 586
+SVD + + + G +V +A
Sbjct: 147 DDHDSVDKIVI-QKYHTVNGHNCEVRKAL 174
Score = 38.8 bits (89), Expect = 8e-04
Identities = 30/221 (13%), Positives = 56/221 (25%), Gaps = 59/221 (26%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
E+ K+++ L + T E ++ G + + DP TK +G TY
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTL--------TDCVVMRDPNTKRSRGFGFVTY 55
Query: 273 IKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKAQEK 332
E VD A++ + K
Sbjct: 56 ATVEEVDAAMNARPHKVDGRVV-----------------------------------EPK 80
Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVL 392
R D R I V + + + LR+ + G ++ + +
Sbjct: 81 RAVSREDSQRPGAHLTVKKIFVGGIKEDT-----------EEHHLRDYFEQYGKIEVIEI 129
Query: 393 H----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 429
G A + F + ++ D
Sbjct: 130 MTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCE 169
Score = 38.8 bits (89), Expect = 0.001
Identities = 30/224 (13%), Positives = 58/224 (25%), Gaps = 59/224 (26%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K+ ++ K+++ L + T E ++ G + + DP TK +G
Sbjct: 1 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTL--------TDCVVMRDPNTKRSRGFGF 52
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLEKLKKA 614
TY E VD A++
Sbjct: 53 VTYATVEEVDAAMNARPHKVDGRVV----------------------------------- 77
Query: 615 QEKLFDWRPDKMRGERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKK 674
+ K R D R I V + + + LR+ + G ++
Sbjct: 78 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDT-----------EEHHLRDYFEQYGKIEV 126
Query: 675 VVLH----DKHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
+ + G A + F + ++ D
Sbjct: 127 IEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCE 169
Score = 29.2 bits (64), Expect = 1.4
Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 4/107 (3%)
Query: 659 QQDLREECSKCGHVKKVVLHD----KHPEGVAQIFFKEPEAADACRELLNGRWFGQRQIT 714
+ LR + G + V+ K G + + E DA + G+
Sbjct: 20 DESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 79
Query: 715 AETWDGKTRYKIQETAEEREARLKKWETFLEEEDKKKKEAGKGSIDE 761
+ + ++ + + EE + G I+
Sbjct: 80 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV 126
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 40.9 bits (95), Expect = 4e-05
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 16/91 (17%)
Query: 213 EESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 272
S V+V L + + + VE ++K G + V K AL +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPFKR-------------QALVEF 58
Query: 273 IKKESVDLALSILD--GYEIRGKKIKVERAK 301
+S ++ I G++ +
Sbjct: 59 ENIDSAKECVTFAADVPVYIAGQQAFFNYST 89
Score = 40.2 bits (93), Expect = 8e-05
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
K + V+V L + + + VE ++K G + V K AL
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG-TICYVMMMPFKR-------------QALV 56
Query: 556 TYIKKESVDLALSILD--GYEIRGKKIKVERAK 586
+ +S ++ I G++ +
Sbjct: 57 EFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89
Score = 32.5 bits (73), Expect = 0.039
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 351 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 410
V+ V+ L + V + DL E K G + V++ + A + F+ ++
Sbjct: 17 VVHVRGL------CESVV-----EADLVEALEKFGTICYVMMMPFKRQ--ALVEFENIDS 63
Query: 411 ADACRELL--NGRWFGQRQI 428
A C + +Q
Sbjct: 64 AKECVTFAADVPVYIAGQQA 83
Score = 32.5 bits (73), Expect = 0.039
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 15/80 (18%)
Query: 636 VIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDKHPEGVAQIFFKEPEA 695
V+ V+ L + V + DL E K G + V++ + A + F+ ++
Sbjct: 17 VVHVRGL------CESVV-----EADLVEALEKFGTICYVMMMPFKRQ--ALVEFENIDS 63
Query: 696 ADACRELL--NGRWFGQRQI 713
A C + +Q
Sbjct: 64 AKECVTFAADVPVYIAGQQA 83
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 40.8 bits (95), Expect = 5e-05
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 186 MENPKAEEKVVPGQKRKPEPPKWFDIGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKD 245
NP+ + G + + V + + +E F E+ +K G V ++
Sbjct: 10 YRNPQNSSQSADGLR------------SAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EE 56
Query: 246 VDTNQMKIKLYTDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVE 298
++ D G+ + ++E + A+ L+ G+ I E
Sbjct: 57 MN--------VCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
Score = 40.8 bits (95), Expect = 5e-05
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 498 QENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTY 557
+ V + + +E F E+ +K G V ++++ D G+ +
Sbjct: 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EEMN--------VCDNLGDHLVGNVYVKF 75
Query: 558 IKKESVDLALSILDGYEIRGKKIKVE 583
++E + A+ L+ G+ I E
Sbjct: 76 RREEDAEKAVIDLNNRWFNGQPIHAE 101
Score = 39.6 bits (92), Expect = 1e-04
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 344 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK---HPEGV 400
+S + V ++ +D+ +++ E K G V+++ + D H G
Sbjct: 17 SQSADGLRSAVSDVEMQEHYDEF------FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN 70
Query: 401 AQIFFKEPEAADACRELLNGRWFGQRQITAE 431
+ F+ E A+ LN RWF + I AE
Sbjct: 71 VYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
Score = 39.6 bits (92), Expect = 1e-04
Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 629 ERSKNESVIIVKNLFDPALFDKDVTLILEYQQDLREECSKCGHVKKVVLHDK---HPEGV 685
+S + V ++ +D+ +++ E K G V+++ + D H G
Sbjct: 17 SQSADGLRSAVSDVEMQEHYDEF------FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN 70
Query: 686 AQIFFKEPEAADACRELLNGRWFGQRQITAE 716
+ F+ E A+ LN RWF + I AE
Sbjct: 71 VYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 38.6 bits (89), Expect = 2e-04
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 495 KKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDAL 554
K +N VY+ P D T ++ E ++ G V+ K FKG
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---------MRRTLHKAFKGSIF 51
Query: 555 CTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ ES + G + + + +
Sbjct: 52 VVFDSIESAKKFVE-TPGQKYKETDLLILFKD 82
Score = 37.4 bits (86), Expect = 5e-04
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
++ VY+ P D T ++ E ++ G V+ K FKG +
Sbjct: 5 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ---------MRRTLHKAFKGSIFVVFD 55
Query: 274 KKESVDLALSILDGYEIRGKKIKVERAK 301
ES + G + + + +
Sbjct: 56 SIESAKKFVE-TPGQKYKETDLLILFKD 82
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 38.3 bits (88), Expect = 2e-04
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 500 NTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 559
N ++++NLP + + + + + + +
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAF-------------VEFTT 54
Query: 560 KESVDLALSILDGYEI-RGKKIKVERAK 586
+ + A L G++I +K+ AK
Sbjct: 55 ELQSNAAKEALQGFKITPTHAMKITFAK 82
Score = 37.5 bits (86), Expect = 4e-04
Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 215 STKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIK 274
+ ++++NLP + + + + + + +
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAF-------------VEFTT 54
Query: 275 KESVDLALSILDGYEI-RGKKIKVERAK 301
+ + A L G++I +K+ AK
Sbjct: 55 ELQSNAAKEALQGFKITPTHAMKITFAK 82
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 37.9 bits (87), Expect = 3e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 275
T V V NLP Q + + + CG + + + K A + +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPI------IHVDVA----DSLKKNFRFARIEFARY 50
Query: 276 ESVDLALSILDGYEIRGKKIKVERA 300
+ A++ + +I V
Sbjct: 51 DGALAAITK-THKVVGQNEIIVSHL 74
Score = 37.9 bits (87), Expect = 3e-04
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKK 560
T V V NLP Q + + + CG + + + K A + +
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPI------IHVDVA----DSLKKNFRFARIEFARY 50
Query: 561 ESVDLALSILDGYEIRGKKIKVERA 585
+ A++ + +I V
Sbjct: 51 DGALAAITK-THKVVGQNEIIVSHL 74
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 37.2 bits (85), Expect = 5e-04
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 218 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 277
+ + LP D+T +E +++ L VD + A T + E
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKG---------------TAFVTLLNGEQ 45
Query: 278 VDLALSILDGYEIRGKKIKVERAK 301
+ A++ +R +++ V+
Sbjct: 46 AEAAINTFHQSRLRERELSVQLQP 69
Score = 37.2 bits (85), Expect = 5e-04
Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 15/84 (17%)
Query: 503 VYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYIKKES 562
+ + LP D+T +E +++ L VD + A T + E
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKG---------------TAFVTLLNGEQ 45
Query: 563 VDLALSILDGYEIRGKKIKVERAK 586
+ A++ +R +++ V+
Sbjct: 46 AEAAINTFHQSRLRERELSVQLQP 69
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 33.3 bits (75), Expect = 0.015
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 212 GEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
G S +++ LP ++T+ E + + G V +
Sbjct: 5 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQA--------------FLE 50
Query: 272 YIKKESVDLALSI--LDGYEIRGKKIKVERAK 301
+E+ ++ +R + I ++ +
Sbjct: 51 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 82
Score = 31.4 bits (70), Expect = 0.075
Identities = 9/93 (9%), Positives = 28/93 (30%), Gaps = 16/93 (17%)
Query: 496 KAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALC 555
+ +++ LP ++T+ E + + G V +
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQA--------------FL 49
Query: 556 TYIKKESVDLALSI--LDGYEIRGKKIKVERAK 586
+E+ ++ +R + I ++ +
Sbjct: 50 ELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 82
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
domain 1 {Propionibacterium freudenreichii, subsp.
shermanii [TaxId: 1744]}
Length = 557
Score = 35.5 bits (81), Expect = 0.024
Identities = 24/180 (13%), Positives = 56/180 (31%), Gaps = 16/180 (8%)
Query: 333 LFDWRPDKMRGERSKNESVIIVKNLFDP-ALFDKDVTLILEYQQDLREECSKCGHVKKVV 391
L R+ E++ + D + L R + +++
Sbjct: 333 LTAQDVY-NNVVRTCIEAMAATQGHTQSLHTNSLDEAIALPTDFSARIARNTQLFLQQES 391
Query: 392 LHDKHPEGVAQIFF---KEPEAADACRELLNGRWFGQRQITAETWDGKTRYKIQETAEER 448
+ + + + + A + + G + +I+E A
Sbjct: 392 GTTRVIDPWSGSAYVEELTWDLARKAWGHIQ-EVEKVGGMAKAIEKGIPKMRIEEAAART 450
Query: 449 EARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKP-----KKKRKKDLEKLKKAQENTKV 503
+AR+ G++ + K+ ++ E LK ++K L KL+ ++ KV
Sbjct: 451 QARIDS-----GRQPLIGVNKYRLEHEPPLDVLKVDNSTVLAEQKAKLVKLRAERDPEKV 505
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 31.2 bits (70), Expect = 0.12
Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 487 RKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYT 546
R + +E + A ++ V L +++ + + V++KCGLV +
Sbjct: 7 RHEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY-------- 58
Query: 547 KDFKGDALCTYIKKESVDLALSILDGYEI---RGKKIKV 582
+ Y E A L+G E+ G+KI +
Sbjct: 59 ------SFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91
Score = 28.1 bits (62), Expect = 1.4
Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 17/87 (19%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
+S V L +++ + + V++KCGLV + + Y
Sbjct: 19 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPY--------------SFARYR 64
Query: 274 KKESVDLALSILDGYEI---RGKKIKV 297
E A L+G E+ G+KI +
Sbjct: 65 TTEESKRAYVTLNGKEVVDDLGQKITL 91
>d1f2na_ b.121.4.7 (A:) Sobemovirus coat protein {RYMV (Rice yellow
mottle virus) [TaxId: 31744]}
Length = 189
Score = 31.4 bits (71), Expect = 0.24
Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 25/101 (24%)
Query: 56 KYKWDTASNSWVPSVPLVTSDKAA-----DSSDEEEYDENNAQKTAPPIQRQDMSKGS-- 108
+K ++P V + D +D P MS+ +
Sbjct: 48 MWKPTRWDVVYLPEVSATVAGSIEMCFLYDYAD------------TIPRYTGKMSRTAGF 95
Query: 109 ------YGYEGDTHTYTDSTDGTVYIWDKEKNAWFPKVDDD 143
YG EG S V + +V
Sbjct: 96 VTSSVWYGAEGCHLLSGGSARNAVVASMDCSRVGWKRVTSS 136
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 29.3 bits (65), Expect = 0.48
Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 213 EESTKVYVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCT 271
E V++ + + + +++++ G++ ++ + +A
Sbjct: 6 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVI--------------SNHLILNKINEAFIE 51
Query: 272 YIKKESVDLALSI--LDGYEIRGKKIKVERAK 301
E A+ + GK ++V ++
Sbjct: 52 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 83
Score = 28.5 bits (63), Expect = 0.79
Identities = 10/96 (10%), Positives = 33/96 (34%), Gaps = 18/96 (18%)
Query: 495 KKAQENTKV-YVSNLPLD-LTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGD 552
K E +V ++ + + + +++++ G++ ++ + +
Sbjct: 2 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVI--------------SNHLILNKINE 47
Query: 553 ALCTYIKKESVDLALSI--LDGYEIRGKKIKVERAK 586
A E A+ + GK ++V ++
Sbjct: 48 AFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQ 83
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 28.4 bits (63), Expect = 0.74
Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 17/88 (19%)
Query: 499 ENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 558
++T V V P + + G ++K V +N Y
Sbjct: 3 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNT--------------GNWMHIRYQ 47
Query: 559 KKESVDLALSILDGYEIRGK-KIKVERA 585
K ALS DG I V+
Sbjct: 48 SKLQARKALS-KDGRIFGESIMIGVKPC 74
Score = 27.6 bits (61), Expect = 1.3
Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 17/88 (19%)
Query: 214 ESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDFKGDALCTYI 273
+ T V V P + + G ++K V +N Y
Sbjct: 3 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNT--------------GNWMHIRYQ 47
Query: 274 KKESVDLALSILDGYEIRGK-KIKVERA 300
K ALS DG I V+
Sbjct: 48 SKLQARKALS-KDGRIFGESIMIGVKPC 74
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 216 TKVYVSNLPLDLTQEEFVEVMQKCG 240
+KV + LP LT+E+ E +Q
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPMP 26
Score = 27.7 bits (62), Expect = 1.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 501 TKVYVSNLPLDLTQEEFVEVMQKCG 525
+KV + LP LT+E+ E +Q
Sbjct: 2 SKVVIRRLPPTLTKEQLQEHLQPMP 26
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg)
{Thermus thermophilus [TaxId: 274]}
Length = 89
Score = 27.6 bits (61), Expect = 1.6
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKK 317
+P ++ F +K+ + L +LD G + A + P +
Sbjct: 3 EPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAG--VGNIYADEALFRARLSPFRPARS 60
Query: 318 KRKKDLEKLKKA 329
+++ +L +A
Sbjct: 61 LTEEEARRLYRA 72
Score = 27.6 bits (61), Expect = 1.6
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 2/72 (2%)
Query: 543 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKK 602
+P ++ F +K+ + L +LD G + A + P +
Sbjct: 3 EPLSEAFAFPGFFRGLKESARPLKALLLDQRLAAG--VGNIYADEALFRARLSPFRPARS 60
Query: 603 KRKKDLEKLKKA 614
+++ +L +A
Sbjct: 61 LTEEEARRLYRA 72
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 29.1 bits (63), Expect = 2.2
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 111 YEGDTHTYTDSTDGTVYIWD 130
G+ + S DGT+ ++
Sbjct: 305 ATGNGRIISLSLDGTLNFYE 324
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 27.3 bits (59), Expect = 2.5
Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 199 QKRKPEPPKWFD-IGEESTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYT 257
+K + +P + FD E +++SNLP + V + + +K+ +MK + +
Sbjct: 1 KKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFI 60
Query: 258 DPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 301
+ + + + +G+ +KV+ ++
Sbjct: 61 E-----------METREDAMAMVDHCLKKALWFQGRCVKVDLSE 93
Score = 26.9 bits (58), Expect = 3.3
Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 482 KPKKKRKKDLEKLKKAQENTKVYVSNLPLDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLY 541
KP+ K + ++ K + +++SNLP + V + + +K+ +MK + +
Sbjct: 2 KPEGKPDQKFDQ--KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAF 59
Query: 542 TDPYTKDFKGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAK 586
+ + + + +G+ +KV+ ++
Sbjct: 60 IE-----------METREDAMAMVDHCLKKALWFQGRCVKVDLSE 93
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 28.7 bits (62), Expect = 2.9
Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 15/95 (15%)
Query: 51 DKTGTKYKWDTASNSWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYG 110
D + +D+A+ L +++ N K A G
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDS 322
Query: 111 YEGDTHT---------------YTDSTDGTVYIWD 130
++ + T DG + IWD
Sbjct: 323 LHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 357
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 28.4 bits (61), Expect = 3.7
Identities = 11/130 (8%), Positives = 30/130 (23%)
Query: 5 YVHYEGDVAVYTDPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASN 64
++ G + N +KL ++ FD +
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177
Query: 65 SWVPSVPLVTSDKAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDG 124
+ + + + K + + + T S D
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237
Query: 125 TVYIWDKEKN 134
++I+ ++
Sbjct: 238 NIFIYSVKRP 247
>d1edqa3 d.26.3.1 (A:444-516) Chitinase A {Serratia marcescens
[TaxId: 615]}
Length = 73
Score = 25.8 bits (56), Expect = 4.6
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 23 QYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWV 67
+ TW+N +++ + Y Y Y + ++ +
Sbjct: 26 KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLI 70
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.3 bits (62), Expect = 5.0
Identities = 18/191 (9%), Positives = 58/191 (30%), Gaps = 12/191 (6%)
Query: 431 ETWDGKTRYKIQETAEEREARLKKWETFLGKKIKVERAKFTMKGEAYDPKLKPKKKRKKD 490
E +++ + ++ ++ + + + + KF + +L K +
Sbjct: 574 EILSEFYYVRLEYYQKRKDHMSERLQWEV--EKYSFQVKFIK--MIIEKELTVTNKPRNA 629
Query: 491 LEKLKKAQENTKVYVSNLP-LDLTQEEFVEVMQKCGLVMKDVDTNQMKIKLYTDPYTKDF 549
+ + + + P +E E + D + + + +
Sbjct: 630 IIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPE 689
Query: 550 KGDALCTYIKKESVDLALSILDGYEIRGKKIKVERAKFTMKGEAYDPKLKPKKKRKKDLE 609
+ Y+ + + + L +K+ ++ + + E KL K DL+
Sbjct: 690 ELYGTYEYL----LGMRIWSLTKERY--QKLLKQKQEKETELENLL-KLSAKDIWNTDLK 742
Query: 610 KLKKAQEKLFD 620
+ ++
Sbjct: 743 AFEVGYQEFLQ 753
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.9 bits (60), Expect = 5.2
Identities = 8/114 (7%), Positives = 25/114 (21%)
Query: 17 DPQSRQQYTWDNEKNEWKLRQIDYEFDGSNYFYKDKTGTKYKWDTASNSWVPSVPLVTSD 76
+ + Q + ++ + A +S +
Sbjct: 204 NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 263
Query: 77 KAADSSDEEEYDENNAQKTAPPIQRQDMSKGSYGYEGDTHTYTDSTDGTVYIWD 130
+ + +++Q + + + DG + WD
Sbjct: 264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.132 0.385
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,010,863
Number of extensions: 153780
Number of successful extensions: 1051
Number of sequences better than 10.0: 1
Number of HSP's gapped: 898
Number of HSP's successfully gapped: 295
Length of query: 773
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 681
Effective length of database: 1,144,436
Effective search space: 779360916
Effective search space used: 779360916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.2 bits)