BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2161
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 201 bits (512), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 93/155 (60%), Positives = 114/155 (73%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLK+DR QH+PTLHPTSEEL++ + FTT DLGGH QARRVW++Y PA++ IVF++D +
Sbjct: 54 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCA 113
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D SR ESK E VPILILGNKID DA SE+++R FGLYG TTGK
Sbjct: 114 DHSRLVESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNV 173
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
+ + L RP+E+FMCSVLKRQG+G GFRWL+ YID
Sbjct: 174 TLKELNARPMEVFMCSVLKRQGYGEGFRWLSQYID 208
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 199 bits (507), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 113/155 (72%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLK+DR QH+PTLHPTSEEL++ + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 41 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 100
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D R ESK E VPILILGNKID +A SE+ +R FGLYG TTGK
Sbjct: 101 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 160
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
S + L RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 161 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 195
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 199 bits (505), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 92/155 (59%), Positives = 113/155 (72%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLK+DR QH+PTLHPTSEEL++ + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D R ESK E VPILILGNKID +A SE+ +R FGLYG TTGK
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
S + L RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 196 bits (498), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 112/155 (72%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLK+DR QH+PTLHPTSEEL++ + FTT DLGG +QARRVW++Y PA++ IVF++D +
Sbjct: 35 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGGIQARRVWKNYLPAINGIVFLVDCA 94
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D R ESK E VPILILGNKID +A SE+ +R FGLYG TTGK
Sbjct: 95 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 154
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
S + L RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 155 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 189
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 104/154 (67%), Gaps = 5/154 (3%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 42 MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D RF E++ E VP +ILGNKID +A SE E+R GL TTG
Sbjct: 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---- 156
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
S+ I RP+E+FMCSV+ R G+ F+WL+ YI
Sbjct: 157 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 162 bits (411), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/153 (52%), Positives = 103/153 (67%), Gaps = 5/153 (3%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 20 MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 79
Query: 61 DRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D RF E++ E VP +ILGNKID +A SE E+R GL TTG
Sbjct: 80 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTG---- 134
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
S+ I RP+E+FMCSV+ R G+ F+WL+ Y
Sbjct: 135 SQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 167
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
D+GG + R WR YF D ++++ID++DR RF E+ E VP+LI N
Sbjct: 67 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 126
Query: 92 KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
K D+ AA E+ L+ ++ R ++ CS L +G +G W+
Sbjct: 127 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 174
Query: 152 NYID 155
++
Sbjct: 175 KNVN 178
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
D+GG + R WR YF D ++++ID++DR RF E+ E VP+LI N
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 92 KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
K D+ AA E+ L+ ++ R ++ CS L +G +G W+
Sbjct: 126 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 173
Query: 152 NYID 155
++
Sbjct: 174 KNVN 177
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
D+GG + R WR YF D ++++ID++DR RF E+ E VP+LI N
Sbjct: 54 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 92 KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
K D+ AA E+ L+ ++ R ++ CS L +G +G W+
Sbjct: 114 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 161
Query: 152 NYI 154
+
Sbjct: 162 KNV 164
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR Y+ + ++F++D++D
Sbjct: 20 LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSND 79
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
RSR E++ L+ NK D+ +A S E+ GL+
Sbjct: 80 RSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 130
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ RP + +G G WL+N +
Sbjct: 131 ---IRNRPWFIQATCATSGEGLYEGLEWLSNSL 160
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR Y+ + ++F++D++D
Sbjct: 37 LKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
RSR E++ L+ NK D+ +A S E+ GL+
Sbjct: 97 RSRIGEAREVMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ RP + +G G WL+N +
Sbjct: 148 ---IRNRPWFIQATCATSGEGLYEGLEWLSNCL 177
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR Y+ + ++F++D++D
Sbjct: 37 LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
RSR E++ L+ NK D+ +A S E+ GL+
Sbjct: 97 RSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ RP + +G G WL+N +
Sbjct: 148 ---IRNRPWFIQATCATSGEGLYEGLEWLSNSL 177
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGN 91
D+GG + R WR YF D ++++ID++DR RF E+ E VP+LI N
Sbjct: 54 DIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFAN 113
Query: 92 KIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
K D+ AA E+ L+ ++ R ++ CS L +G +G W+
Sbjct: 114 KQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVC 161
Query: 152 NYI 154
+
Sbjct: 162 KNV 164
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR Y+ + ++F+ID++D
Sbjct: 37 LKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
RSR E++ L+ NK D+ +A S E+ GL+
Sbjct: 97 RSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHS--------- 147
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
++ RP + +G G WL+N
Sbjct: 148 ---IRNRPWFIQSTCATSGEGLYEGLEWLSN 175
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 47/92 (51%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXX 78
E L +I F DLGG R WR YF DA+++++D++DR R +K+E
Sbjct: 59 ETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDE 118
Query: 79 XXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ DAASE E+ G+
Sbjct: 119 DELRKSLLLIFANKQDLPDAASEAEIAEQLGV 150
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Query: 4 NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 63
N ++ +PT+ + E+ + FT D+ G + R +W Y+ AI+F+ID+SDR
Sbjct: 45 NAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRL 104
Query: 64 RFPESKYEXXXXXXX--XXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R +K E +PIL NK+D+ DA + +V L
Sbjct: 105 RMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCL----------- 153
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
E ++ +P + +K +G G WL + I
Sbjct: 154 -ENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 12/151 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR Y+ AI+F++D++D
Sbjct: 37 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ E +L+ NK D+ A S EV GL + K +
Sbjct: 97 RDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQAMSISEVTEKLGLQTIKNRKWYCQ 156
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
C+ G G WLA+
Sbjct: 157 TS-----------CAT-NGDGLYEGLDWLAD 175
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E ++ ++ F DLGG R WR Y+ DA+++++D+ DR R SK
Sbjct: 31 IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 90
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
E +++ NK D+ A + E+ + GL L+ R
Sbjct: 91 ELVAMLEEEELRKAILVVFANKQDMEQAMTPSEMANALGLPA------------LKDRKW 138
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
++F S K G WL
Sbjct: 139 QIFKTSATKGTGLDEAMEWL 158
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ +++ G++ D+GG + R +W Y V+AIV++IDA+DR + S+
Sbjct: 52 IPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRN 111
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
E +P+L+LGNK D+ +A E ++ L +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAI 154
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 33 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 92
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 93 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 141
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 32 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 92 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 140
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 37 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
R R E++ E +L+ NK D+ +A + E+ GL+ L
Sbjct: 97 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 148
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 36 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 95
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
R R E++ E +L+ NK D+ +A + E+ GL+ L
Sbjct: 96 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 147
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E ++ ++ F DLGG R WR Y+ DA+++++D+ DR R SK
Sbjct: 33 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 92
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
E +++ NK D+ A + E+ + GL L+ R
Sbjct: 93 ELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKW 140
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
++F S K G WL
Sbjct: 141 QIFKTSATKGTGLDEAMEWL 160
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 62.8 bits (151), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E + +I FT D+GG + R +WR YF ++F++D++DR R E++
Sbjct: 29 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 88
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
E +L+ NK D+ +A + E+ GL+ L
Sbjct: 89 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 131
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 20 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 80 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 128
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 20 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 80 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 128
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 54/109 (49%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 20 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 79
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 80 RDRIDEARQELHRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGL 128
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E + +I FT D+GG + R +WR YF ++F++D++DR R E++
Sbjct: 194 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEARE 253
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
E +L+ NK D+ +A + E+ GL+ L
Sbjct: 254 ELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 296
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 40 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 99
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ E +L+ NK D+ +A + E+ GL+
Sbjct: 100 RDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS--------- 150
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
L+ R + +G G WL+N I
Sbjct: 151 ---LRQRHWYIQSTCATSGEGLYEGLDWLSNNI 180
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 16/147 (10%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E + +I FT D+GG + R +WR Y+ D ++F++D++DR R +++
Sbjct: 46 IPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDARE 105
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
E IL+ NK D+ +A S EV L +R
Sbjct: 106 ELHRMINEEELKDAIILVFANKQDLPNAMSAAEVTEKLHLN--------------TIRER 151
Query: 131 ELFMCSVLKRQGFG--NGFRWLANYID 155
F+ S +G G GF WL +++
Sbjct: 152 NWFIQSTCATRGDGLYEGFDWLTTHLN 178
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ +++ G++ D+GG + R +W Y V AIV+++DA+D+ + SK
Sbjct: 52 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 111
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
E +P+L+LGNK D+ A E E+ L +
Sbjct: 112 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAI 154
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 342 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 401
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 402 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 450
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ +++ G++ D+GG + R +W Y V AIV+++DA+D+ + SK
Sbjct: 61 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN 120
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEV 104
E +P+L+LGNK D+ A E E+
Sbjct: 121 ELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKEL 154
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 33 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 92
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 93 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 141
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 22 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 81
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 82 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 130
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 23 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCAD 82
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
R R E++ E ILI NK D+ DA E++ GL
Sbjct: 83 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL 131
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 22 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSND 81
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
R R E++ E +L+ NK D+ +A + E+ GL+ L
Sbjct: 82 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 133
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 12/143 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ E LS ++ DLGG R WR Y+ A++F++D++D+ R + E
Sbjct: 48 PTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKE 107
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+L+ NK D A S EV KE E L+ R
Sbjct: 108 LHLMLQEEELQDAALLVFANKQDQPGALSASEV-----------SKELNLVE-LKDRSWS 155
Query: 132 LFMCSVLKRQGFGNGFRWLANYI 154
+ S +K +G G WL + I
Sbjct: 156 IVASSAIKGEGITEGLDWLIDVI 178
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 49 LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 108
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R ES E +L+ NK D+ +A E+ GL
Sbjct: 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQ---------- 158
Query: 122 REILQMRPIELFMCSVLKRQGFG--NGFRWLAN 152
+R ++ + QG G +G WL++
Sbjct: 159 ----HLRSRTWYVQATCATQGTGLYDGLDWLSH 187
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +W+ YF ++F++D++D
Sbjct: 37 LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSND 96
Query: 62 RSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E E +L+ NK D+ +A + E+ GL L
Sbjct: 97 RERIQEVADELQKMLLVDELRDAVLLLFANKQDLPNAMAISEMTDKLGLQSL-------- 148
Query: 122 REILQMRPIELFMCSVLKRQGFG--NGFRWLAN 152
R ++ + QG G G WL+N
Sbjct: 149 ------RNRTWYVQATCATQGTGLYEGLDWLSN 175
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
+PT+ E ++ ++ F DLGG R WR Y+ DA+++++D+ DR R SK
Sbjct: 36 IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS 95
Query: 71 EXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI 130
E +++ NK D A + E + GL L+ R
Sbjct: 96 ELVAXLEEEELRKAILVVFANKQDXEQAXTSSEXANSLGL------------PALKDRKW 143
Query: 131 ELFMCSVLKRQGFGNGFRWL 150
++F S K G WL
Sbjct: 144 QIFKTSATKGTGLDEAXEWL 163
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ EE+ + + F D+GG R W Y+ + I+ ++D+ DR R +K E
Sbjct: 46 PTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEE 105
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+LI NK D+ + E+ + L ++ P
Sbjct: 106 LYRMLAHEDLRKAAVLIFANKQDMKGCMTAAEISKYLTLSS------------IKDHPWH 153
Query: 132 LFMCSVLKRQGFGNGFRWLANYI 154
+ C L +G G W+ + I
Sbjct: 154 IQSCCALTGEGLCQGLEWMTSRI 176
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 19/152 (12%)
Query: 7 TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF 65
+++H+ T+ E G + FT D+GG + R +W Y+ +DA++F++D+SD R
Sbjct: 43 SSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRL 102
Query: 66 PESKYEXXXXXXXX-------XXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 118
K E VP L NK+D A + E+ L L
Sbjct: 103 CVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTL----- 157
Query: 119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150
+ P +F + LK G GF WL
Sbjct: 158 ------MGDHPFVIFASNGLKGTGVHEGFSWL 183
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ EE+ + + F D+GG R W Y+ + ++ ++D++DR R ++ E
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+LI NK D+ + + E+ F L ++
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 153
Query: 132 LFMCSVLKRQGFGNGFRWL 150
+ C L +G G W+
Sbjct: 154 IQACCALTGEGLCQGLEWM 172
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ EE+ + + F D+GG R W Y+ + ++ ++D++DR R ++ E
Sbjct: 52 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 111
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+LI NK D+ + + E+ F L ++
Sbjct: 112 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 159
Query: 132 LFMCSVLKRQGFGNGFRWL 150
+ C L +G G W+
Sbjct: 160 IQACCALTGEGLCQGLEWM 178
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ EE+ + + F D+GG R W Y+ + ++ ++D++DR R ++ E
Sbjct: 46 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 105
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+LI NK D+ + + E+ F L ++
Sbjct: 106 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 153
Query: 132 LFMCSVLKRQGFGNGFRWL 150
+ C L +G G W+
Sbjct: 154 IQACCALTGEGLCQGLEWM 172
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PT+ EE+ + + F D+GG R W Y+ + ++ ++D++DR R ++ E
Sbjct: 51 PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREE 110
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131
+LI NK D+ + + E+ F L ++
Sbjct: 111 LYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWH 158
Query: 132 LFMCSVLKRQGFGNGFRWL 150
+ C L +G G W+
Sbjct: 159 IQACCALTGEGLCQGLEWM 177
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PTL + L D+GG R WR+YF + D +++++D++DR R + + E
Sbjct: 46 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 105
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ A S + +R L
Sbjct: 106 LQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLEL 144
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PTL + L D+GG R WR+YF + D +++++D++DR R + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ A S + ++ L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PTL + L D+GG R WR+YF + D +++++D++DR R + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 107
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ A S + ++ L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 146
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PTL + L D+GG R WR+YF + D +++++D++DR R + + E
Sbjct: 48 PTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRXQDCQRE 107
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ A S + ++ L
Sbjct: 108 LQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALEL 146
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71
PTL + L D+GG R WR+YF + D +++++D++DR R + + E
Sbjct: 31 PTLGFNIKTLEHRGFKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRE 90
Query: 72 XXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+LI NK D+ A S + ++ L
Sbjct: 91 LQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALEL 129
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPI 86
V D G + R + + YF D ++ + D + F + E VPI
Sbjct: 78 VLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIR-EWVDMIEDAAHETVPI 136
Query: 87 LILGNKIDIFDAASEDEVRHFFGLYG 112
+++GNK DI D A+ + + G +G
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFG 162
>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Alf4 And Gdp
pdb|1SVS|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To
Gppnhp
Length = 353
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + D+ F D+GG R+ W F V AI+F + SD
Sbjct: 178 VPTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
pdb|1SHZ|D Chain D, Crystal Structure Of The P115rhogef Rgrgs Domain In A
Complex With Galpha(13):galpha(i1) Chimera
Length = 340
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
PT + D+ F D+GG R+ W + F V AI+F + SD
Sbjct: 166 PTKGIHETHFTFKDLHFKMFDVGGQRSERKKWFECFEGVTAIIFCVALSD 215
>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|B Chain B, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation.
pdb|3V00|A Chain A, Studies Of A Constitutively Active G-Alpha Subunit Provide
Insights Into The Mechanism Of G Protein Activation
Length = 356
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESK 69
+ S D+ F D+GG R+ W F V AI+F + SD +R ES
Sbjct: 190 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESM 249
Query: 70 YEXXXXXXXXXXXXVPILILGNKIDIFD 97
+ I++ NK D+F+
Sbjct: 250 HLFNSICNNKWFTDTSIILFLNKKDLFE 277
>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
Length = 350
Score = 33.1 bits (74), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ S D+ F D+GG R+ W F V AI+F + SD
Sbjct: 184 QFSFKDLNFRXFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 225
>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|D Chain D, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|A Chain A, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|C Chain C, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 325
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ S D+ F D+GG R+ W F V AI+F + SD
Sbjct: 159 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 200
>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|B Chain B, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|C Chain C, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
pdb|4G5O|D Chain D, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif.
pdb|3ONW|B Chain B, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity
For The Rgs14 Goloco Motif
Length = 328
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 134 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 191
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 192 VTAIIFCVALSD 203
>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs10 And Activated Gi Alpha 3
Length = 323
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 158 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 198
>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
pdb|3QI2|B Chain B, A Galpha P-Loop Mutation Prevents Transition To The
Activated State: G42r Bound To Rgs14 Goloco
Length = 328
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 134 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 191
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 192 VTAIIFCVALSD 203
>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|B Chain B, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
pdb|3QE0|C Chain C, A Galpha-I1 P-Loop Mutation Prevents Transition To The
Activated State
Length = 325
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 131 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 188
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 189 VTAIIFCVALSD 200
>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
pdb|2IK8|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs16 And Activated Gi Alpha 1
Length = 324
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 130 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 187
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 188 VTAIIFCVALSD 199
>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|B Chain B, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|C Chain C, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5R|D Chain D, Structure Of Lgn Gl4GALPHAI3 COMPLEX
pdb|4G5S|A Chain A, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|B Chain B, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|C Chain C, Structure Of Lgn Gl3GALPHAI3 COMPLEX
pdb|4G5S|D Chain D, Structure Of Lgn Gl3GALPHAI3 COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ D+ F D+GG R+ W F V AI+F + SD
Sbjct: 165 FTFKDLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 205
>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double
Mutant I56cQ333C
Length = 354
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 160 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 217
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 218 VTAIIFCVALSD 229
>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
pdb|2GTP|B Chain B, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs1 And Activated Gi Alpha 1
Length = 323
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 129 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 186
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 187 VTAIIFCVALSD 198
>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|1KJY|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
pdb|2OM2|C Chain C, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco
Motif Of Rgs14
Length = 325
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 131 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 188
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 189 VTAIIFCVALSD 200
>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|B Chain B, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|C Chain C, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
pdb|1Y3A|D Chain D, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide
Provides Insight Into Guanine Nucleotide Exchange
Length = 329
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 135 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 192
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 193 VTAIIFCVALSD 204
>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1
pdb|1AS2|A Chain A, Gdp+pi Bound G42v Gia1
pdb|1AS3|A Chain A, Gdp Bound G42v Gia1
Length = 353
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 159 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 216
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 217 VTAIIFCVALSD 228
>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|B Chain B, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|C Chain C, Structure Of Lgn Gl4GALPHAI1 COMPLEX
pdb|4G5Q|D Chain D, Structure Of Lgn Gl4GALPHAI1 COMPLEX
Length = 330
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 136 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 193
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 194 VTAIIFCVALSD 205
>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
pdb|2XNS|B Chain B, Crystal Structure Of Human G Alpha I1 Bound To A Designed
Helical Peptide Derived From The Goloco Motif Of Rgs14
Length = 327
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 133 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 190
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 191 VTAIIFCVALSD 202
>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
pdb|2G83|B Chain B, Structure Of Activated G-alpha-i1 Bound To A Nucleotide-
State-selective Peptide: Minimal Determinants For
Recognizing The Active Form Of A G Protein Alpha Subunit
Length = 313
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 128 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 185
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 186 VTAIIFCVALSD 197
>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit
Length = 315
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 129 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 186
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 187 VTAIIFCVALSD 198
>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1AGR|A Chain A, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1AGR|D Chain D, Complex Of Alf4-Activated Gi-Alpha-1 With Rgs4
pdb|1CIP|A Chain A, Gi-Alpha-1 Subunit Of Guanine Nucleotide-Binding Protein
Complexed With A Gtp Analogue
pdb|1BOF|A Chain A, Gi-Alpha-1 Bound To Gdp And Magnesium
pdb|1GDD|A Chain A, Tertiary And Quaternary Structural Changes In Gia1 Induced
By Gtp Hydrolysis
pdb|1GFI|A Chain A, Structures Of Active Conformations Of Gi Alpha 1 And The
Mechanism Of Gtp Hydrolysis
pdb|1GIA|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 159 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 216
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 217 VTAIIFCVALSD 228
>pdb|3FFA|A Chain A, Crystal Structure Of A Fast Activating G Protein Mutant
pdb|3FFB|A Chain A, Gi-Alpha-1 Mutant In Gdp Bound Form
Length = 360
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 166 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 223
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 224 VTAIIFCVALSD 235
>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Alf4 And Gdp
pdb|2ZJZ|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
pdb|2ZJZ|B Chain B, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound
To Gdp
Length = 356
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 162 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEG 219
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 220 VTAIIFCVALSD 231
>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2ODE|C Chain C, Crystal Structure Of The Heterodimeric Complex Of Human
Rgs8 And Activated Gi Alpha 3
pdb|2V4Z|A Chain A, The Crystal Structure Of The Human G-Protein Subunit Alpha
( Gnai3) In Complex With An Engineered Regulator Of G-
Protein Signaling Type 2 Domain (Rgs2)
Length = 350
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
D+ F D+GG R+ W F V AI+F + SD
Sbjct: 192 DLYFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSD 228
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE 212
>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The
Mechanism Of Gtp Hydrolysis
Length = 353
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+GG R+ W F
Sbjct: 159 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGGLRSERKKWIHCFEG 216
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 217 VTAIIFCVALSD 228
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS--------DR- 62
PT + + ++ F D+GG R+ W + F +V +I+F++ +S DR
Sbjct: 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 246
Query: 63 -SRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 97
+R ES V I++ NK D+ +
Sbjct: 247 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 282
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 11/97 (11%)
Query: 16 PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRF 65
P E G+ V+ D+GG RR W F V A++F S+ ++R
Sbjct: 174 PVGENKKSGE-VYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRM 232
Query: 66 PESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASED 102
E+K ++ NK DIF+ D
Sbjct: 233 METKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLD 269
>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|B Chain B, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TND|C Chain C, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha
Complexed With Gtp Gamma S
pdb|1TAD|A Chain A, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|B Chain B, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAD|C Chain C, Gtpase Mechanism Of Gproteins From The 1.7-Angstrom
Crystal Structure Of Transducin Alpha-Gdp-Alf4-
pdb|1TAG|A Chain A, Structural Determinants For Activation Of The
Alpha-Subunit Of A Heterotrimeric G Protein
Length = 324
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI----------IDASDRSRFPESK 69
+ S D+ F D+GG R+ W F V I+FI ++ + +R ES
Sbjct: 158 QFSFKDLNFRMFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESL 217
Query: 70 YEXXXXXXXXXXXXVPILILGNKIDIF 96
+ I++ NK D+F
Sbjct: 218 HLFNSICNHRYFATTSIVLFLNKKDVF 244
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 286
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIV-FTTHDLGGHVQARRVWRD 45
LK T +H P L + E LSM THD+ V R++W+D
Sbjct: 107 LKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKD 151
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIV-FTTHDLGGHVQARRVWRD 45
LK T +H P L + E LSM THD+ V R++W+D
Sbjct: 101 LKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKD 145
>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
pdb|4FID|B Chain B, Crystal Structure Of A Heterotrimeric G-Protein Subunit
From Entamoeba Histolytica, Ehg-Alpha-1
Length = 340
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 56
DI F D+GG R+ W +F VD +F+
Sbjct: 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFV 191
>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1
Length = 354
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+ G R+ W F
Sbjct: 160 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVAGQRSERKKWIHCFEG 217
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 218 VTAIIFCVALSD 229
>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GIT|A Chain A, Structure Of Gtp-Binding Protein
Length = 353
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+G R+ W F
Sbjct: 159 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVGAQRSERKKWIHCFEG 216
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 217 VTAIIFCVALSD 228
>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1TL7|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 402
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ + + F D+GG RR W F V AI+F++ +S
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 380
Score = 30.0 bits (66), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ + + F D+GG RR W F V AI+F++ +S
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|C Chain C, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|C Chain C, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|C Chain C, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3G82|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|C Chain C, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 394
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ + + F D+GG RR W F V AI+F++ +S
Sbjct: 211 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 20 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ + + F D+GG RR W F V AI+F++ +S
Sbjct: 197 KFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 237
>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|3C14|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
Length = 402
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ F D+GG RR W F V AI+F++ +S
Sbjct: 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 251
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 29.6 bits (65), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 9 QHMPTL----HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR 64
+++PTL HP + G I F D G + + Y+ + + D + R
Sbjct: 38 KYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
Query: 65 FPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 97
+ +PI++ GNK+DI D
Sbjct: 98 Y--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|2RGN|A Chain A, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|D Chain D, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 353
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE 228
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 29.6 bits (65), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS--------DR- 62
PT + + ++ F D+GG R+ W + F +V +I+F++ +S DR
Sbjct: 163 PTKGIHEYDFEIKNVPFKMVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQ 222
Query: 63 -SRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 97
+R ES V I++ NK D+ +
Sbjct: 223 TNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLE 258
>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
pdb|4GNK|C Chain C, Crystal Structure Of Galphaq In Complex With Full-length
Human Plcbeta3
Length = 353
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 178 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE 228
>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
Length = 355
Score = 29.6 bits (65), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 180 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE 230
>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its
Effector Phospholipase C Beta 3
Length = 327
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE 202
>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKC|C Chain C, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
pdb|4EKD|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2
(rgs2) In Complex With Murine Galpha-q(r183c)
Length = 347
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 172 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE 222
>pdb|3A9R|A Chain A, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|B Chain B, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9R|C Chain C, X-Ray Structures Of Bacillus Pallidus D-Arabinose
Isomerasecomplex With (4r)-2-Methylpentane-2,4-Diol
pdb|3A9S|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9S|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With Glycerol
pdb|3A9T|A Chain A, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|B Chain B, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
pdb|3A9T|C Chain C, X-Ray Structure Of Bacillus Pallidus D-Arabinose Isomerase
Complex With L-Fucitol
Length = 595
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
EE+ G+ + + Q +R W DYFP D + I+++S
Sbjct: 286 EEMGYGEEALGRNAIVAGFQGQRQWTDYFPNGDFMETILNSS 327
>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1
Length = 354
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 17/72 (23%)
Query: 5 DRTAQHMPTLHPTSEEL---------------SMGDIVFTTHDLGGHVQARRVWRDYFPA 49
DR AQ P PT +++ + D+ F D+ G R+ W F
Sbjct: 160 DRIAQ--PNYIPTQQDVLRTRVKTTGIVETHFTFKDLHFKMFDVDGQRSERKKWIHCFEG 217
Query: 50 VDAIVFIIDASD 61
V AI+F + SD
Sbjct: 218 VTAIIFCVALSD 229
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 9 QHMPTL----HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR 64
+++PTL HP + G I F D G + + Y+ + + D + R
Sbjct: 38 KYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVT 97
Query: 65 FPESKYEXXXXXXXXXXXXVPILILGNKIDIFD 97
+ +PI++ GNK+DI D
Sbjct: 98 Y--KNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1R08|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|1R09|2 Chain 2, Human Rhinovirus 14 Complexed With Antiviral Compound R
61837
pdb|1RMU|2 Chain 2, Three-Dimensional Structures Of Drug-Resistant Mutants
Of Human Rhinovirus 14
pdb|2R04|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2R06|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2R07|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RM2|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RMU|2 Chain 2, Three-Dimensional Structures Of Drug-Resistant Mutants
Of Human Rhinovirus 14
pdb|2RR1|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS1|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS3|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|2RS5|2 Chain 2, Structural Analysis Of Antiviral Agents That Interact
With The Capsid Of Human Rhinoviruses
pdb|4RHV|2 Chain 2, The Use Of Molecular-Replacement Phases For The
Refinement Of The Human Rhinovirus 14 Structure
pdb|1HRI|2 Chain 2, Structure Determination Of Antiviral Compound Sch 38057
Complexed With Human Rhinovirus 14
pdb|1HRV|2 Chain 2, Hrv14SDZ 35-682 Complex
pdb|1RUJ|2 Chain 2, Rhinovirus 14 Mutant With Ser 1 223 Replaced By Gly
(S1223g)
pdb|1RUI|2 Chain 2, Rhinovirus 14 Mutant S1223g Complexed With Antiviral
Compound Win 52084
pdb|1RUH|2 Chain 2, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52084
pdb|1RUG|2 Chain 2, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52035
pdb|1RUF|2 Chain 2, Rhinovirus 14 (Hrv14) (Mutant With Asn 1 219 Replaced By
Ala (N219a In Chain 1)
pdb|1RUE|2 Chain 2, Rhinovirus 14 Site Directed Mutant N1219a Complexed With
Antiviral Compound Win 52035
pdb|1RUD|2 Chain 2, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52084
pdb|1RUC|2 Chain 2, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52035
pdb|1VRH|2 Chain 2, Hrv14/sdz 880-061 Complex
pdb|1RVF|2 Chain 2, Fab Complexed With Intact Human Rhinovirus
pdb|1D3I|2 Chain 2, Cryo-Em Structure Of Human Rhinovirus 14 (Hrv14)
Complexed With A Two-Domain Fragment Of Its Cellular
Receptor, Intercellular Adhesion Molecule-1
(D1d2-Icam-1). Implications For Virus-Receptor
Interactions. Alpha Carbons Only
pdb|1NA1|B Chain B, The Structure Of Hrv14 When Complexed With Pleconaril
pdb|1NCQ|B Chain B, The Structure Of Hrv14 When Complexed With Pleconaril,
An Antiviral Compound
Length = 262
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 52
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 51 DAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXVPILILGNKIDIFDAASEDEVRHFFGL 110
+ I++I D S+ FP + +P L++ NKID+ D + + F
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE 307
Query: 111 YGLT---------TGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFRWLANYI 154
GL TG + EI++ +RP + + R+ R +Y+
Sbjct: 308 KGLNPIKISALKGTGIDLVKEEIIKTLRP----LAEKVAREKIERELRRYRSYL 357
>pdb|2HWB|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket
In Hrv14 And Hrv1a
pdb|2HWC|2 Chain 2, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket
In Hrv14 And Hrv1a
Length = 262
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 52
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 9/100 (9%)
Query: 4 NDR-TAQHMPTLHP---TSEELSMGDIVFTTH--DLGGHVQARRVWRDYFPAVDAIVFII 57
ND+ + Q+ T+ T E GD V T D G + + + ++ D V +
Sbjct: 30 NDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVY 89
Query: 58 DASDRSRFPESKY---EXXXXXXXXXXXXVPILILGNKID 94
D ++ S F K E P +ILGNKID
Sbjct: 90 DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
>pdb|1K5M|B Chain B, Crystal Structure Of A Human Rhinovirus Type 14:human
Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus
Mn- Iii-2
Length = 277
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 52
+++++G+ TT + V W +Y P VDA
Sbjct: 14 QQITLGNSTITTQEAANAVVCYAEWPEYLPDVDA 47
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + SR
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVT--SRVTYKNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
pdb|1ZCA|B Chain B, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+
And Alf4-
Length = 359
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
I F D+GG R+ W F + +I+F++ +S+
Sbjct: 199 IPFKMVDVGGQRSQRQKWFQCFDGITSILFMVSSSE 234
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP S + G+I F D G + + Y+ + + D + SR
Sbjct: 42 VHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNW 99
Query: 74 XXXXXXXXXXVPILILGNKIDI 95
+PI++ GNK+D+
Sbjct: 100 HRDLVRVCENIPIVLCGNKVDV 121
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP S + G+I F D G + + Y+ + + D + SR
Sbjct: 41 VHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNW 98
Query: 74 XXXXXXXXXXVPILILGNKIDI 95
+PI++ GNK+D+
Sbjct: 99 HRDLVRVCENIPIVLCGNKVDV 120
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 40 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 97
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 98 HRDLVRVCENIPIVLCGNKVDIKD 121
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 52 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 109
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 110 HRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2QIN|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
Length = 269
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVW 43
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVW 43
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 52 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 109
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 110 HRDLVRVCENIPIVLCGNKVDIKD 133
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 19 EELSMGDIVFTTHDLGGHVQARRVW 43
E +++G IVFT H + GH W
Sbjct: 143 EVITVGGIVFTAHFMAGHTPGSTAW 167
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 49 VHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 106
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 107 HRDLVRVCENIPIVLCGNKVDIKD 130
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 43 VHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 100
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 101 HRDLVRVCENIPIVLCGNKVDIKD 124
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP S + G+I F D G + + Y+ + + D + SR
Sbjct: 49 VHPLSFYTNFGEIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVT--SRITYKNVPNW 106
Query: 74 XXXXXXXXXXVPILILGNKIDI 95
+PI++ GNK+D+
Sbjct: 107 HRDLVRVCENIPIVLCGNKVDV 128
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
>pdb|2WA0|A Chain A, Crystal Structure Of The Human Magea4
Length = 240
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 86 ILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
I++LG D+ASE+E+ G+ G+ G+E T
Sbjct: 127 IIVLGTIAMEGDSASEEEIWEELGVMGVYDGREHT 161
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 2/84 (2%)
Query: 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXX 73
+HP + G I F D G + + Y+ + + D + R +
Sbjct: 47 VHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTY--KNVPNW 104
Query: 74 XXXXXXXXXXVPILILGNKIDIFD 97
+PI++ GNK+DI D
Sbjct: 105 HRDLVRVCENIPIVLCGNKVDIKD 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,433,286
Number of Sequences: 62578
Number of extensions: 157145
Number of successful extensions: 648
Number of sequences better than 100.0: 133
Number of HSP's better than 100.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 498
Number of HSP's gapped (non-prelim): 154
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)