Query psy2161
Match_columns 155
No_of_seqs 118 out of 1530
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 17:53:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2161.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2161hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0070|consensus 100.0 3.2E-32 7E-37 181.9 13.4 142 1-154 36-177 (181)
2 KOG0084|consensus 100.0 9.6E-32 2.1E-36 181.0 12.3 136 1-154 28-171 (205)
3 KOG0071|consensus 100.0 1E-30 2.2E-35 167.2 12.9 142 1-154 36-177 (180)
4 PLN00223 ADP-ribosylation fact 100.0 6.7E-30 1.5E-34 175.9 15.8 142 1-154 36-177 (181)
5 KOG0092|consensus 100.0 1.6E-30 3.5E-35 174.5 12.0 137 1-155 24-167 (200)
6 cd04149 Arf6 Arf6 subfamily. 100.0 1.7E-29 3.7E-34 172.0 16.1 141 1-153 28-168 (168)
7 smart00177 ARF ARF-like small 100.0 2.9E-29 6.3E-34 171.8 16.1 142 1-154 32-173 (175)
8 cd04150 Arf1_5_like Arf1-Arf5- 100.0 4.2E-29 9.2E-34 168.6 16.0 140 1-152 19-158 (159)
9 PF00025 Arf: ADP-ribosylation 100.0 1E-29 2.2E-34 174.1 12.2 141 2-154 34-175 (175)
10 KOG0073|consensus 100.0 7.4E-29 1.6E-33 162.4 13.4 141 2-154 36-177 (185)
11 KOG0094|consensus 100.0 5.1E-29 1.1E-33 167.6 11.9 135 4-155 44-185 (221)
12 PTZ00133 ADP-ribosylation fact 100.0 2.6E-28 5.6E-33 168.1 15.7 142 1-154 36-177 (182)
13 cd04158 ARD1 ARD1 subfamily. 100.0 3.1E-28 6.7E-33 165.8 15.3 143 1-154 18-160 (169)
14 KOG0075|consensus 100.0 4.1E-28 8.8E-33 156.4 14.2 135 7-153 46-180 (186)
15 KOG0078|consensus 100.0 2E-28 4.4E-33 166.9 12.4 135 2-154 32-173 (207)
16 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.2E-27 4.8E-32 161.4 16.3 142 2-152 19-166 (167)
17 cd04120 Rab12 Rab12 subfamily. 100.0 8.6E-28 1.9E-32 167.8 14.0 136 2-154 20-162 (202)
18 cd04121 Rab40 Rab40 subfamily. 100.0 2.5E-27 5.5E-32 164.0 14.2 134 2-154 26-166 (189)
19 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 6.2E-27 1.4E-31 160.1 15.8 140 1-152 34-173 (174)
20 PTZ00099 rab6; Provisional 100.0 3.5E-27 7.7E-32 161.6 14.4 129 8-154 7-141 (176)
21 cd04154 Arl2 Arl2 subfamily. 100.0 9.3E-27 2E-31 159.0 15.7 139 2-152 34-172 (173)
22 cd04157 Arl6 Arl6 subfamily. 100.0 1.8E-26 3.9E-31 155.5 16.2 140 2-153 19-162 (162)
23 cd04151 Arl1 Arl1 subfamily. 99.9 2.3E-26 5E-31 154.8 16.3 139 2-152 19-157 (158)
24 smart00178 SAR Sar1p-like memb 99.9 2E-26 4.3E-31 159.0 15.7 148 2-154 37-184 (184)
25 smart00176 RAN Ran (Ras-relate 99.9 9.6E-27 2.1E-31 162.3 13.6 133 2-154 15-153 (200)
26 cd01875 RhoG RhoG subfamily. 99.9 9.4E-27 2E-31 161.5 13.4 148 2-154 23-176 (191)
27 cd04133 Rop_like Rop subfamily 99.9 7.7E-27 1.7E-31 159.9 12.5 134 1-153 20-171 (176)
28 KOG0072|consensus 99.9 5.1E-27 1.1E-31 150.9 10.2 142 1-154 37-178 (182)
29 cd00879 Sar1 Sar1 subfamily. 99.9 9.3E-26 2E-30 156.1 17.1 152 2-154 39-190 (190)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 4.5E-26 9.8E-31 155.7 13.8 136 2-154 22-163 (172)
31 KOG0098|consensus 99.9 1.6E-26 3.5E-31 154.5 11.0 134 2-153 26-166 (216)
32 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.5E-25 3.3E-30 150.9 15.4 140 2-152 19-159 (160)
33 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 6.5E-26 1.4E-30 156.1 13.3 132 2-152 25-177 (182)
34 KOG0091|consensus 99.9 2.6E-26 5.5E-31 150.6 9.7 136 2-154 28-172 (213)
35 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 1.8E-25 4E-30 151.5 14.3 138 2-152 19-163 (164)
36 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.9E-25 8.5E-30 149.8 15.9 137 7-153 31-167 (167)
37 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.6E-25 7.7E-30 152.6 15.5 142 2-154 23-169 (183)
38 KOG0079|consensus 99.9 5.3E-26 1.1E-30 146.9 10.4 127 8-153 35-167 (198)
39 cd04126 Rab20 Rab20 subfamily. 99.9 1.5E-25 3.2E-30 158.3 13.7 148 1-153 19-188 (220)
40 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 3E-25 6.5E-30 157.7 14.3 133 2-153 33-186 (232)
41 KOG0087|consensus 99.9 5.9E-26 1.3E-30 154.5 10.2 134 2-153 34-174 (222)
42 cd04122 Rab14 Rab14 subfamily. 99.9 4E-25 8.8E-30 149.9 14.2 135 2-154 22-163 (166)
43 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.8E-25 8.1E-30 154.6 14.0 137 2-154 20-167 (201)
44 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-24 2.8E-29 146.1 16.1 140 2-153 19-158 (158)
45 cd04175 Rap1 Rap1 subgroup. T 99.9 3.4E-25 7.4E-30 149.8 12.9 135 3-154 22-162 (164)
46 cd01874 Cdc42 Cdc42 subfamily. 99.9 3.9E-25 8.5E-30 151.4 13.0 143 2-153 21-173 (175)
47 cd04131 Rnd Rnd subfamily. Th 99.9 4.8E-25 1E-29 151.4 12.8 132 2-152 21-173 (178)
48 cd04128 Spg1 Spg1p. Spg1p (se 99.9 5.3E-25 1.1E-29 151.7 13.0 138 2-154 20-165 (182)
49 cd04117 Rab15 Rab15 subfamily. 99.9 1.2E-24 2.6E-29 147.1 14.4 135 2-154 20-161 (161)
50 cd04136 Rap_like Rap-like subf 99.9 7.4E-25 1.6E-29 147.7 13.1 135 3-154 22-162 (163)
51 cd04127 Rab27A Rab27a subfamil 99.9 1.2E-24 2.7E-29 149.1 14.0 129 8-153 31-175 (180)
52 PTZ00369 Ras-like protein; Pro 99.9 9.3E-25 2E-29 151.2 13.4 136 2-154 25-166 (189)
53 KOG0394|consensus 99.9 5E-25 1.1E-29 147.1 11.3 130 8-153 36-176 (210)
54 KOG0080|consensus 99.9 1.9E-25 4.1E-30 146.2 8.8 135 3-154 32-173 (209)
55 cd01871 Rac1_like Rac1-like su 99.9 1.8E-24 3.8E-29 148.1 13.8 148 2-154 21-174 (174)
56 cd04144 Ras2 Ras2 subfamily. 99.9 1.5E-24 3.2E-29 150.3 12.9 136 2-154 19-162 (190)
57 PLN03071 GTP-binding nuclear p 99.9 1.7E-24 3.6E-29 153.2 13.3 132 3-154 34-171 (219)
58 cd01865 Rab3 Rab3 subfamily. 99.9 2.8E-24 6E-29 145.7 13.9 135 2-154 21-162 (165)
59 cd04176 Rap2 Rap2 subgroup. T 99.9 1.7E-24 3.7E-29 146.2 12.8 136 3-155 22-163 (163)
60 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.3E-24 7.1E-29 146.2 13.8 136 2-154 20-164 (170)
61 cd00877 Ran Ran (Ras-related n 99.9 2.6E-24 5.7E-29 146.1 12.6 133 3-154 21-158 (166)
62 cd04138 H_N_K_Ras_like H-Ras/N 99.9 4.8E-24 1E-28 143.4 13.6 136 2-154 21-161 (162)
63 cd04109 Rab28 Rab28 subfamily. 99.9 4.4E-24 9.4E-29 150.7 14.0 136 2-154 20-165 (215)
64 cd04119 RJL RJL (RabJ-Like) su 99.9 5.8E-24 1.3E-28 143.7 14.1 136 2-154 20-166 (168)
65 KOG0086|consensus 99.9 2.6E-24 5.6E-29 139.9 11.4 127 9-153 37-169 (214)
66 KOG0093|consensus 99.9 1.1E-24 2.4E-29 140.7 9.5 128 9-154 49-182 (193)
67 KOG0074|consensus 99.9 6.7E-25 1.5E-29 140.8 8.3 141 2-154 37-178 (185)
68 cd04155 Arl3 Arl3 subfamily. 99.9 2.2E-23 4.7E-28 142.1 15.9 140 2-153 34-173 (173)
69 KOG0095|consensus 99.9 1.3E-24 2.9E-29 140.8 9.1 136 1-153 26-167 (213)
70 cd01867 Rab8_Rab10_Rab13_like 99.9 1.4E-23 3.1E-28 142.4 14.4 135 2-154 23-164 (167)
71 cd04134 Rho3 Rho3 subfamily. 99.9 2.5E-24 5.5E-29 149.1 10.8 148 2-154 20-173 (189)
72 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.3E-23 2.9E-28 148.5 14.1 144 2-152 21-173 (222)
73 cd04110 Rab35 Rab35 subfamily. 99.9 1.7E-23 3.7E-28 146.0 14.3 134 2-154 26-166 (199)
74 cd04112 Rab26 Rab26 subfamily. 99.9 1.8E-23 3.9E-28 145.0 14.1 135 2-154 20-162 (191)
75 cd04159 Arl10_like Arl10-like 99.9 5.7E-23 1.2E-27 137.3 16.0 139 2-152 19-158 (159)
76 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 2.2E-23 4.7E-28 141.2 14.1 135 2-154 22-163 (166)
77 cd04143 Rhes_like Rhes_like su 99.9 1.9E-23 4.2E-28 150.0 14.5 136 2-153 20-169 (247)
78 cd04111 Rab39 Rab39 subfamily. 99.9 1.7E-23 3.6E-28 147.3 13.8 135 3-154 23-165 (211)
79 cd04116 Rab9 Rab9 subfamily. 99.9 3E-23 6.5E-28 141.1 14.5 137 2-154 25-170 (170)
80 cd04103 Centaurin_gamma Centau 99.9 1.3E-23 2.9E-28 141.6 12.5 131 3-154 21-158 (158)
81 cd04125 RabA_like RabA-like su 99.9 2.4E-23 5.2E-28 143.9 14.0 135 2-154 20-161 (188)
82 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.6E-23 5.6E-28 140.3 13.2 131 7-154 28-163 (164)
83 cd01868 Rab11_like Rab11-like. 99.9 4.9E-23 1.1E-27 139.3 13.7 134 3-154 24-164 (165)
84 cd01864 Rab19 Rab19 subfamily. 99.9 6.3E-23 1.4E-27 138.9 14.2 135 3-154 24-165 (165)
85 KOG0083|consensus 99.9 1.7E-24 3.7E-29 137.9 6.1 136 1-154 16-159 (192)
86 smart00173 RAS Ras subfamily o 99.9 3.8E-23 8.2E-28 139.7 13.0 135 3-154 21-161 (164)
87 PLN03110 Rab GTPase; Provision 99.9 5.5E-23 1.2E-27 145.2 14.3 135 2-154 32-173 (216)
88 KOG0081|consensus 99.9 9.9E-24 2.1E-28 138.0 9.5 134 3-153 30-179 (219)
89 cd01860 Rab5_related Rab5-rela 99.9 8.7E-23 1.9E-27 137.7 14.4 136 2-155 21-163 (163)
90 cd01873 RhoBTB RhoBTB subfamil 99.9 6.1E-23 1.3E-27 142.8 13.9 126 7-153 34-194 (195)
91 cd04140 ARHI_like ARHI subfami 99.9 4.8E-23 1E-27 139.6 13.1 135 2-153 21-163 (165)
92 KOG0076|consensus 99.9 2.3E-24 5E-29 142.6 6.2 136 8-154 51-186 (197)
93 cd04115 Rab33B_Rab33A Rab33B/R 99.9 7.3E-23 1.6E-27 139.4 13.7 134 4-154 24-168 (170)
94 cd04106 Rab23_lke Rab23-like s 99.9 7.7E-23 1.7E-27 137.8 13.2 133 2-153 20-161 (162)
95 cd01866 Rab2 Rab2 subfamily. 99.9 1.4E-22 3E-27 137.8 14.5 134 3-154 25-165 (168)
96 cd01863 Rab18 Rab18 subfamily. 99.9 1.9E-22 4E-27 135.9 14.6 136 2-154 20-161 (161)
97 PLN03118 Rab family protein; P 99.9 1.3E-22 2.9E-27 142.7 14.1 136 2-154 34-176 (211)
98 PF00071 Ras: Ras family; Int 99.9 2.3E-22 5.1E-27 135.5 13.6 133 4-154 21-160 (162)
99 cd04113 Rab4 Rab4 subfamily. 99.9 3.8E-22 8.1E-27 134.5 14.5 134 3-154 21-161 (161)
100 smart00174 RHO Rho (Ras homolo 99.9 1.4E-22 2.9E-27 138.2 12.4 132 3-153 19-170 (174)
101 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.8E-22 8.2E-27 134.8 14.4 128 8-154 29-163 (164)
102 cd04118 Rab24 Rab24 subfamily. 99.9 2.6E-22 5.5E-27 139.2 13.8 134 2-154 20-165 (193)
103 cd04132 Rho4_like Rho4-like su 99.9 2E-22 4.3E-27 139.1 13.2 134 2-154 20-166 (187)
104 KOG0077|consensus 99.9 2.2E-23 4.7E-28 137.1 7.5 155 1-155 39-193 (193)
105 cd04177 RSR1 RSR1 subgroup. R 99.9 2.4E-22 5.1E-27 136.6 12.9 136 3-154 22-163 (168)
106 PLN03108 Rab family protein; P 99.9 5.1E-22 1.1E-26 139.7 14.6 135 2-154 26-167 (210)
107 cd01861 Rab6 Rab6 subfamily. 99.9 1.1E-21 2.5E-26 132.0 15.1 134 3-154 21-161 (161)
108 cd04124 RabL2 RabL2 subfamily. 99.9 3.8E-22 8.2E-27 134.8 12.6 132 3-154 21-157 (161)
109 KOG0097|consensus 99.9 6.1E-22 1.3E-26 127.5 12.0 125 10-152 40-170 (215)
110 cd04148 RGK RGK subfamily. Th 99.9 8.7E-22 1.9E-26 139.5 13.4 134 2-154 20-162 (221)
111 KOG0088|consensus 99.9 4E-23 8.7E-28 135.1 5.9 118 18-153 52-173 (218)
112 smart00175 RAB Rab subfamily o 99.9 1.6E-21 3.5E-26 131.4 13.9 129 8-154 27-161 (164)
113 cd01892 Miro2 Miro2 subfamily. 99.9 9.5E-22 2.1E-26 133.9 12.0 132 2-153 24-164 (169)
114 KOG0393|consensus 99.9 2.9E-22 6.4E-27 137.1 9.4 142 7-152 30-176 (198)
115 cd04146 RERG_RasL11_like RERG/ 99.9 6.5E-22 1.4E-26 133.9 11.1 130 8-154 26-163 (165)
116 cd01862 Rab7 Rab7 subfamily. 99.9 3.6E-21 7.7E-26 130.8 14.5 130 8-153 27-165 (172)
117 cd04142 RRP22 RRP22 subfamily. 99.9 2.2E-21 4.7E-26 135.3 13.7 136 2-153 20-172 (198)
118 cd04147 Ras_dva Ras-dva subfam 99.9 2E-21 4.4E-26 135.5 13.4 136 3-154 20-162 (198)
119 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.3E-21 2.9E-26 133.5 12.2 129 4-151 22-170 (173)
120 cd04123 Rab21 Rab21 subfamily. 99.9 4.6E-21 1E-25 128.8 14.2 128 9-154 28-161 (162)
121 KOG0395|consensus 99.9 5.5E-21 1.2E-25 132.7 14.3 136 2-154 23-164 (196)
122 cd04139 RalA_RalB RalA/RalB su 99.9 9.1E-21 2E-25 127.7 13.8 130 8-154 27-161 (164)
123 cd01870 RhoA_like RhoA-like su 99.9 8.6E-21 1.9E-25 129.4 13.1 148 2-154 21-174 (175)
124 cd04135 Tc10 TC10 subfamily. 99.9 9E-21 2E-25 129.2 12.2 147 3-154 21-173 (174)
125 cd04137 RheB Rheb (Ras Homolog 99.9 2E-20 4.3E-25 128.3 13.3 135 3-154 22-162 (180)
126 cd00154 Rab Rab family. Rab G 99.9 2.8E-20 6E-25 124.1 13.6 132 3-152 21-159 (159)
127 cd04114 Rab30 Rab30 subfamily. 99.9 5E-20 1.1E-24 124.9 14.2 128 9-154 35-168 (169)
128 cd01893 Miro1 Miro1 subfamily. 99.8 3.3E-20 7.1E-25 125.8 13.0 135 2-153 20-162 (166)
129 cd00876 Ras Ras family. The R 99.8 2.3E-19 4.9E-24 120.3 14.2 131 7-154 25-160 (160)
130 PTZ00132 GTP-binding nuclear p 99.8 2E-19 4.3E-24 126.9 13.7 132 4-154 31-167 (215)
131 cd00157 Rho Rho (Ras homology) 99.8 1.2E-19 2.6E-24 123.2 11.5 132 3-152 21-170 (171)
132 cd01890 LepA LepA subfamily. 99.8 3.4E-19 7.4E-24 122.0 13.0 112 25-155 66-177 (179)
133 cd04129 Rho2 Rho2 subfamily. 99.8 1.6E-18 3.5E-23 119.8 13.6 128 8-153 28-171 (187)
134 cd04102 RabL3 RabL3 (Rab-like3 99.8 5.8E-19 1.2E-23 123.3 11.3 96 2-97 20-143 (202)
135 cd01897 NOG NOG1 is a nucleola 99.8 2.1E-18 4.6E-23 116.8 13.1 124 12-154 33-167 (168)
136 cd04105 SR_beta Signal recogni 99.8 1.1E-17 2.5E-22 117.0 13.8 150 2-152 20-202 (203)
137 cd01898 Obg Obg subfamily. Th 99.8 6.2E-18 1.4E-22 114.6 11.4 127 12-154 33-170 (170)
138 cd04171 SelB SelB subfamily. 99.8 1.6E-17 3.5E-22 111.8 12.2 122 13-152 37-163 (164)
139 PRK12299 obgE GTPase CgtA; Rev 99.8 1.7E-17 3.7E-22 123.8 13.1 127 11-154 190-327 (335)
140 PLN00023 GTP-binding protein; 99.8 9.4E-18 2E-22 123.3 11.3 111 2-112 41-188 (334)
141 PRK15494 era GTPase Era; Provi 99.7 1.4E-16 3.1E-21 119.3 14.6 124 10-155 84-216 (339)
142 TIGR02729 Obg_CgtA Obg family 99.7 8.7E-17 1.9E-21 119.8 13.0 129 11-155 189-329 (329)
143 cd00882 Ras_like_GTPase Ras-li 99.7 9.8E-17 2.1E-21 105.5 11.7 130 8-152 24-157 (157)
144 cd01878 HflX HflX subfamily. 99.7 1.5E-16 3.3E-21 111.2 13.2 123 10-154 72-204 (204)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 1.2E-16 2.5E-21 108.1 12.0 128 13-153 34-164 (168)
146 cd01881 Obg_like The Obg-like 99.7 7.5E-17 1.6E-21 109.8 11.1 128 12-154 29-176 (176)
147 smart00275 G_alpha G protein a 99.7 5.9E-17 1.3E-21 121.3 11.1 145 8-153 166-332 (342)
148 cd00066 G-alpha G protein alph 99.7 2E-17 4.4E-22 122.8 8.3 146 8-153 143-309 (317)
149 cd01879 FeoB Ferrous iron tran 99.7 1.6E-16 3.5E-21 106.3 11.9 118 13-154 30-156 (158)
150 cd00881 GTP_translation_factor 99.7 1E-15 2.2E-20 105.2 15.9 135 13-155 49-187 (189)
151 TIGR03156 GTP_HflX GTP-binding 99.7 2.9E-16 6.3E-21 118.0 14.0 122 10-154 220-351 (351)
152 cd01891 TypA_BipA TypA (tyrosi 99.7 5E-16 1.1E-20 107.9 13.9 112 18-144 57-171 (194)
153 TIGR02528 EutP ethanolamine ut 99.7 6.9E-17 1.5E-21 106.7 9.0 98 29-151 38-141 (142)
154 TIGR01393 lepA GTP-binding pro 99.7 3.7E-16 7.9E-21 124.4 14.4 108 26-155 70-180 (595)
155 KOG4252|consensus 99.7 2E-18 4.4E-23 115.3 0.6 127 8-153 47-179 (246)
156 cd01888 eIF2_gamma eIF2-gamma 99.7 3.6E-16 7.8E-21 109.5 11.9 113 26-155 83-199 (203)
157 cd01889 SelB_euk SelB subfamil 99.7 5.4E-16 1.2E-20 107.6 12.4 129 12-155 40-186 (192)
158 PRK03003 GTP-binding protein D 99.7 6.4E-16 1.4E-20 120.5 14.2 129 2-154 58-198 (472)
159 KOG0096|consensus 99.7 3.1E-17 6.6E-22 110.4 5.5 134 2-154 30-168 (216)
160 COG2229 Predicted GTPase [Gene 99.7 1.2E-15 2.5E-20 102.5 12.8 122 12-152 53-175 (187)
161 PRK05433 GTP-binding protein L 99.7 1.3E-15 2.9E-20 121.3 15.0 109 25-155 73-184 (600)
162 TIGR00231 small_GTP small GTP- 99.7 1.8E-15 3.8E-20 100.5 13.4 127 8-151 28-160 (161)
163 KOG3883|consensus 99.7 1.5E-15 3.3E-20 99.1 11.8 130 8-154 38-174 (198)
164 KOG0090|consensus 99.7 4.4E-15 9.5E-20 102.0 14.6 153 1-154 57-238 (238)
165 cd01894 EngA1 EngA1 subfamily. 99.7 1.9E-15 4.2E-20 100.8 12.5 114 16-154 35-157 (157)
166 PF00009 GTP_EFTU: Elongation 99.7 5E-15 1.1E-19 102.4 14.5 126 13-155 55-187 (188)
167 PRK12296 obgE GTPase CgtA; Rev 99.7 1.6E-15 3.4E-20 117.6 12.5 127 11-154 191-339 (500)
168 PRK03003 GTP-binding protein D 99.7 2.8E-15 6.1E-20 116.9 14.0 120 18-154 251-381 (472)
169 PRK04213 GTP-binding protein; 99.7 2.5E-15 5.4E-20 104.8 11.5 128 10-154 38-191 (201)
170 COG1100 GTPase SAR1 and relate 99.6 3.7E-15 8E-20 105.1 12.1 150 2-154 25-184 (219)
171 PRK12297 obgE GTPase CgtA; Rev 99.6 5.6E-15 1.2E-19 113.1 13.1 125 11-154 190-326 (424)
172 PRK05291 trmE tRNA modificatio 99.6 2.9E-15 6.2E-20 116.0 11.6 112 13-154 250-369 (449)
173 KOG0082|consensus 99.6 2E-15 4.2E-20 111.9 9.9 145 8-153 177-342 (354)
174 TIGR00436 era GTP-binding prot 99.6 1.1E-14 2.4E-19 106.1 13.5 113 21-155 43-164 (270)
175 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.8E-14 3.8E-19 111.3 13.8 109 18-154 243-359 (442)
176 TIGR00487 IF-2 translation ini 99.6 1.7E-14 3.7E-19 114.6 13.8 121 18-152 126-247 (587)
177 cd04164 trmE TrmE (MnmE, ThdF, 99.6 2.3E-14 4.9E-19 95.6 12.4 108 18-154 41-156 (157)
178 PRK11058 GTPase HflX; Provisio 99.6 1.9E-14 4.2E-19 110.6 13.4 123 11-154 229-361 (426)
179 TIGR03594 GTPase_EngA ribosome 99.6 1E-14 2.3E-19 112.5 12.0 119 18-153 212-342 (429)
180 TIGR00475 selB selenocysteine- 99.6 8.8E-15 1.9E-19 116.4 11.3 121 16-154 40-165 (581)
181 TIGR03594 GTPase_EngA ribosome 99.6 6E-14 1.3E-18 108.3 14.7 114 17-154 38-159 (429)
182 PRK15467 ethanolamine utilizat 99.6 1.3E-14 2.9E-19 97.8 9.6 102 30-154 41-146 (158)
183 PRK05306 infB translation init 99.6 2.4E-14 5.2E-19 116.4 12.6 121 18-152 329-449 (787)
184 CHL00189 infB translation init 99.6 4.4E-14 9.6E-19 114.1 13.6 115 25-153 294-408 (742)
185 cd01883 EF1_alpha Eukaryotic e 99.6 2.6E-14 5.5E-19 101.2 10.9 118 12-144 63-194 (219)
186 PRK09518 bifunctional cytidyla 99.6 3.3E-14 7.1E-19 115.7 13.0 128 2-154 295-435 (712)
187 TIGR00483 EF-1_alpha translati 99.6 1.3E-14 2.8E-19 111.9 10.0 118 13-145 72-197 (426)
188 PRK00093 GTP-binding protein D 99.6 5.7E-14 1.2E-18 108.6 13.3 112 16-152 39-159 (435)
189 KOG1673|consensus 99.6 2E-14 4.3E-19 94.2 8.5 131 8-153 47-184 (205)
190 TIGR01394 TypA_BipA GTP-bindin 99.6 7.5E-14 1.6E-18 111.1 13.3 127 14-155 52-191 (594)
191 TIGR03680 eif2g_arch translati 99.6 5.2E-14 1.1E-18 107.9 10.9 113 25-154 79-195 (406)
192 cd01895 EngA2 EngA2 subfamily. 99.5 5.1E-13 1.1E-17 90.3 14.3 118 18-153 42-173 (174)
193 PRK12298 obgE GTPase CgtA; Rev 99.5 1.5E-13 3.3E-18 104.6 12.8 131 11-155 191-333 (390)
194 PRK10218 GTP-binding protein; 99.5 2.9E-13 6.2E-18 107.9 14.3 130 11-155 49-195 (607)
195 TIGR00437 feoB ferrous iron tr 99.5 6.1E-14 1.3E-18 111.8 10.1 112 18-153 33-153 (591)
196 PRK12317 elongation factor 1-a 99.5 7.3E-14 1.6E-18 107.8 10.2 119 12-145 70-195 (425)
197 cd00880 Era_like Era (E. coli 99.5 2.1E-13 4.6E-18 90.5 11.0 121 17-154 35-163 (163)
198 KOG4423|consensus 99.5 1.4E-15 3.1E-20 102.2 0.4 129 9-153 53-192 (229)
199 cd04166 CysN_ATPS CysN_ATPS su 99.5 3E-13 6.5E-18 95.0 11.8 119 13-145 64-184 (208)
200 PRK00089 era GTPase Era; Revie 99.5 5.1E-13 1.1E-17 98.4 13.3 115 22-155 49-171 (292)
201 KOG0462|consensus 99.5 2.5E-13 5.3E-18 104.6 11.1 119 18-155 114-235 (650)
202 cd04168 TetM_like Tet(M)-like 99.5 8.7E-13 1.9E-17 94.4 13.3 137 14-155 52-235 (237)
203 PRK04000 translation initiatio 99.5 5.3E-13 1.2E-17 102.5 12.9 112 26-154 85-200 (411)
204 PRK09518 bifunctional cytidyla 99.5 7E-13 1.5E-17 108.0 13.7 121 16-153 488-619 (712)
205 PRK00454 engB GTP-binding prot 99.5 5.3E-13 1.1E-17 92.5 11.2 129 7-154 50-193 (196)
206 TIGR00491 aIF-2 translation in 99.5 3.6E-13 7.7E-18 107.0 11.2 116 27-152 70-213 (590)
207 PF02421 FeoB_N: Ferrous iron 99.5 3.2E-13 7E-18 90.3 8.9 111 13-150 34-156 (156)
208 cd01896 DRG The developmentall 99.5 1.4E-12 3E-17 93.2 12.8 122 12-155 33-226 (233)
209 cd04163 Era Era subfamily. Er 99.5 1.9E-12 4.1E-17 86.7 12.5 114 21-154 46-168 (168)
210 PRK00093 GTP-binding protein D 99.5 1.4E-12 3.1E-17 100.9 13.3 117 19-152 214-341 (435)
211 TIGR03598 GTPase_YsxC ribosome 99.5 8E-13 1.7E-17 90.7 10.4 117 7-144 44-179 (179)
212 COG1159 Era GTPase [General fu 99.5 3.4E-12 7.4E-17 92.2 13.5 125 11-155 39-172 (298)
213 COG0532 InfB Translation initi 99.5 1.2E-12 2.5E-17 100.8 11.6 111 25-152 54-167 (509)
214 PRK10512 selenocysteinyl-tRNA- 99.5 7.5E-13 1.6E-17 105.9 10.9 123 12-153 36-164 (614)
215 COG0481 LepA Membrane GTPase L 99.4 6.8E-13 1.5E-17 100.8 9.1 108 26-155 76-186 (603)
216 TIGR00157 ribosome small subun 99.4 6.1E-13 1.3E-17 95.6 8.3 95 37-152 24-120 (245)
217 cd01884 EF_Tu EF-Tu subfamily. 99.4 7E-12 1.5E-16 87.2 13.0 110 17-143 56-171 (195)
218 PF00503 G-alpha: G-protein al 99.4 2.4E-13 5.1E-18 103.8 5.5 145 10-154 219-389 (389)
219 PRK04004 translation initiatio 99.4 4.8E-12 1E-16 100.8 12.3 114 28-151 73-214 (586)
220 PRK00741 prfC peptide chain re 99.4 4.2E-12 9.1E-17 100.0 11.6 87 18-109 71-160 (526)
221 COG1160 Predicted GTPases [Gen 99.4 5.2E-12 1.1E-16 95.8 11.2 130 1-154 22-164 (444)
222 cd04165 GTPBP1_like GTPBP1-lik 99.4 2.5E-11 5.4E-16 86.2 13.8 129 19-152 77-220 (224)
223 PRK13351 elongation factor G; 99.4 2E-11 4.4E-16 99.3 15.1 83 10-97 57-139 (687)
224 cd01885 EF2 EF2 (for archaea a 99.4 2.4E-11 5.1E-16 86.1 12.9 67 25-96 72-138 (222)
225 PF08477 Miro: Miro-like prote 99.4 2.6E-13 5.6E-18 86.9 2.4 67 26-94 50-119 (119)
226 PRK14845 translation initiatio 99.4 1.3E-11 2.9E-16 102.9 12.3 116 27-152 527-670 (1049)
227 PTZ00327 eukaryotic translatio 99.4 1E-11 2.2E-16 96.3 10.9 113 26-155 117-233 (460)
228 KOG1145|consensus 99.3 2.2E-11 4.8E-16 94.1 12.1 124 13-151 189-312 (683)
229 KOG0085|consensus 99.3 4.1E-13 8.8E-18 93.9 1.9 146 7-152 180-346 (359)
230 PRK12736 elongation factor Tu; 99.3 3.3E-11 7.1E-16 92.3 12.4 119 19-154 68-200 (394)
231 PLN00043 elongation factor 1-a 99.3 1.9E-11 4.1E-16 94.8 11.2 116 13-145 72-203 (447)
232 TIGR02034 CysN sulfate adenyly 99.3 2.4E-11 5.2E-16 93.3 11.7 119 13-145 67-187 (406)
233 COG0486 ThdF Predicted GTPase 99.3 3.7E-11 8E-16 91.5 12.3 116 12-153 251-374 (454)
234 PRK09554 feoB ferrous iron tra 99.3 1.5E-11 3.2E-16 100.6 10.8 112 18-153 42-166 (772)
235 cd01876 YihA_EngB The YihA (En 99.3 7.1E-11 1.5E-15 79.3 12.1 127 7-154 25-170 (170)
236 KOG1489|consensus 99.3 2.5E-11 5.4E-16 88.3 10.2 123 12-153 229-365 (366)
237 cd04167 Snu114p Snu114p subfam 99.3 5.8E-11 1.3E-15 83.7 11.6 66 26-96 71-136 (213)
238 COG2262 HflX GTPases [General 99.3 1E-10 2.2E-15 87.8 13.2 124 9-154 222-355 (411)
239 PRK12740 elongation factor G; 99.3 1.1E-10 2.3E-15 94.9 14.4 83 10-97 44-126 (668)
240 TIGR00485 EF-Tu translation el 99.3 6.6E-11 1.4E-15 90.6 12.5 118 18-152 67-198 (394)
241 PRK12735 elongation factor Tu; 99.3 1.2E-10 2.5E-15 89.3 13.1 119 19-154 68-202 (396)
242 TIGR00503 prfC peptide chain r 99.3 1.6E-10 3.4E-15 91.2 13.3 75 18-97 72-146 (527)
243 cd04169 RF3 RF3 subfamily. Pe 99.3 5.8E-11 1.3E-15 86.4 10.1 89 17-110 62-153 (267)
244 KOG1423|consensus 99.3 1.2E-10 2.7E-15 84.4 11.5 140 9-154 103-270 (379)
245 PTZ00141 elongation factor 1- 99.3 9.5E-11 2.1E-15 90.9 11.5 117 13-145 72-203 (446)
246 PF09439 SRPRB: Signal recogni 99.3 1E-12 2.3E-17 89.7 0.6 108 2-110 23-139 (181)
247 PRK13768 GTPase; Provisional 99.3 3.3E-11 7.1E-16 87.1 8.3 128 26-155 97-247 (253)
248 PRK05124 cysN sulfate adenylyl 99.2 6.1E-11 1.3E-15 92.6 9.9 119 13-146 94-216 (474)
249 TIGR00484 EF-G translation elo 99.2 2.2E-10 4.7E-15 93.3 13.1 80 13-97 62-141 (689)
250 COG1160 Predicted GTPases [Gen 99.2 3.4E-10 7.4E-15 86.1 13.1 134 2-152 198-348 (444)
251 PF10662 PduV-EutP: Ethanolami 99.2 1E-10 2.2E-15 76.8 8.9 99 29-152 39-143 (143)
252 cd01886 EF-G Elongation factor 99.2 3.2E-10 7E-15 82.6 12.3 93 13-110 51-146 (270)
253 cd01855 YqeH YqeH. YqeH is an 99.2 9.4E-11 2E-15 81.2 8.4 102 37-154 22-124 (190)
254 cd04170 EF-G_bact Elongation f 99.2 1.7E-10 3.7E-15 84.1 10.1 83 11-98 49-131 (268)
255 cd01859 MJ1464 MJ1464. This f 99.2 4.6E-11 1E-15 80.2 6.5 93 40-154 3-95 (156)
256 PRK09866 hypothetical protein; 99.2 7.1E-10 1.5E-14 88.0 13.3 114 26-152 230-350 (741)
257 PRK05506 bifunctional sulfate 99.2 3.9E-10 8.4E-15 91.1 11.8 119 13-145 91-211 (632)
258 CHL00071 tufA elongation facto 99.2 7.3E-10 1.6E-14 85.3 12.6 108 18-142 67-180 (409)
259 PRK00049 elongation factor Tu; 99.2 1.1E-09 2.4E-14 84.0 12.9 119 18-153 67-201 (396)
260 KOG0099|consensus 99.1 2.6E-10 5.6E-15 81.3 8.1 144 11-154 187-368 (379)
261 PLN03126 Elongation factor Tu; 99.1 1.4E-09 2.9E-14 85.0 12.9 108 18-142 136-249 (478)
262 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 4.3E-10 9.4E-15 79.9 9.1 131 10-153 31-174 (232)
263 PLN03127 Elongation factor Tu; 99.1 1.7E-09 3.6E-14 84.0 13.0 125 13-154 111-251 (447)
264 COG1084 Predicted GTPase [Gene 99.1 1.3E-09 2.8E-14 79.9 11.4 125 7-152 195-333 (346)
265 PRK12739 elongation factor G; 99.1 3.2E-09 6.9E-14 86.6 14.5 81 12-97 59-139 (691)
266 COG5256 TEF1 Translation elong 99.1 3.1E-10 6.8E-15 85.3 6.9 118 13-145 72-201 (428)
267 KOG1707|consensus 99.1 1.6E-10 3.5E-15 89.8 5.3 134 5-153 32-173 (625)
268 PRK12289 GTPase RsgA; Reviewed 99.1 8.9E-10 1.9E-14 82.9 8.3 90 42-152 82-172 (352)
269 COG2895 CysN GTPases - Sulfate 99.0 6.8E-10 1.5E-14 82.0 6.7 117 12-144 72-192 (431)
270 COG0536 Obg Predicted GTPase [ 99.0 2E-09 4.4E-14 79.2 8.6 127 12-154 192-332 (369)
271 cd01899 Ygr210 Ygr210 subfamil 99.0 1.5E-08 3.3E-13 75.4 12.7 55 83-155 214-269 (318)
272 PRK00007 elongation factor G; 99.0 3.1E-08 6.7E-13 81.0 14.9 80 13-97 62-141 (693)
273 COG1217 TypA Predicted membran 99.0 5.9E-09 1.3E-13 79.6 9.6 126 18-155 60-195 (603)
274 cd01858 NGP_1 NGP-1. Autoanti 99.0 5.4E-09 1.2E-13 70.3 8.4 89 46-153 5-93 (157)
275 cd01854 YjeQ_engC YjeQ/EngC. 98.9 4.7E-09 1E-13 77.2 8.2 89 43-152 72-161 (287)
276 cd01856 YlqF YlqF. Proteins o 98.9 4.2E-09 9.1E-14 71.8 7.4 98 33-154 2-100 (171)
277 PRK12288 GTPase RsgA; Reviewed 98.9 6.2E-09 1.3E-13 78.3 8.8 89 47-153 118-206 (347)
278 PRK00098 GTPase RsgA; Reviewed 98.9 5.6E-09 1.2E-13 77.2 7.7 86 47-152 78-164 (298)
279 TIGR03597 GTPase_YqeH ribosome 98.9 4.6E-09 9.9E-14 79.6 7.2 100 36-152 50-150 (360)
280 COG5257 GCD11 Translation init 98.9 1.4E-08 3E-13 74.5 9.0 113 26-155 86-202 (415)
281 COG1163 DRG Predicted GTPase [ 98.9 3.1E-08 6.7E-13 72.7 10.7 57 7-63 90-154 (365)
282 COG0370 FeoB Fe2+ transport sy 98.9 3.5E-08 7.6E-13 78.5 10.9 109 17-152 41-161 (653)
283 TIGR03596 GTPase_YlqF ribosome 98.8 1.7E-08 3.7E-13 73.9 8.2 96 34-153 5-101 (276)
284 KOG0458|consensus 98.8 7.6E-09 1.6E-13 80.7 5.9 120 14-144 243-371 (603)
285 PRK09563 rbgA GTPase YlqF; Rev 98.7 3.8E-08 8.2E-13 72.5 7.4 97 33-153 7-104 (287)
286 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.5E-08 9.7E-13 64.7 7.0 76 45-142 7-84 (141)
287 TIGR00490 aEF-2 translation el 98.7 9.2E-08 2E-12 78.5 9.6 81 12-97 68-152 (720)
288 cd01849 YlqF_related_GTPase Yl 98.7 9.1E-08 2E-12 64.2 7.9 81 51-152 1-82 (155)
289 KOG1144|consensus 98.7 9.2E-08 2E-12 76.8 8.7 119 27-153 541-685 (1064)
290 KOG1191|consensus 98.7 1.4E-07 3.1E-12 72.5 9.5 136 4-154 290-449 (531)
291 COG0218 Predicted GTPase [Gene 98.7 1.4E-06 3E-11 60.2 13.0 127 8-154 51-196 (200)
292 COG3276 SelB Selenocysteine-sp 98.7 2.1E-07 4.6E-12 70.7 9.2 121 13-154 37-161 (447)
293 PRK07560 elongation factor EF- 98.6 5.6E-07 1.2E-11 74.1 12.0 68 24-96 85-152 (731)
294 COG0050 TufB GTPases - transla 98.6 3.5E-07 7.7E-12 66.5 8.8 122 14-155 63-201 (394)
295 cd04104 p47_IIGP_like p47 (47- 98.6 2.5E-07 5.4E-12 64.5 8.0 116 26-155 52-184 (197)
296 PF03029 ATP_bind_1: Conserved 98.6 1.1E-07 2.3E-12 68.2 5.6 125 27-153 92-235 (238)
297 KOG1490|consensus 98.6 1.7E-07 3.7E-12 72.3 6.1 122 12-153 201-339 (620)
298 KOG1532|consensus 98.5 1.3E-07 2.9E-12 68.1 5.1 126 26-154 116-263 (366)
299 COG4108 PrfC Peptide chain rel 98.5 1.7E-06 3.7E-11 66.0 10.2 87 18-109 73-162 (528)
300 PRK09602 translation-associate 98.5 1.9E-06 4.1E-11 66.1 10.8 35 26-60 72-113 (396)
301 PRK09435 membrane ATPase/prote 98.5 4.3E-07 9.3E-12 68.0 6.7 112 21-154 144-259 (332)
302 TIGR00101 ureG urease accessor 98.5 4.7E-07 1E-11 63.2 6.2 101 25-154 91-195 (199)
303 PF01926 MMR_HSR1: 50S ribosom 98.5 4.7E-06 1E-10 53.0 10.3 73 13-92 34-116 (116)
304 PRK13796 GTPase YqeH; Provisio 98.5 1.3E-06 2.8E-11 66.4 8.6 99 37-153 57-157 (365)
305 COG4917 EutP Ethanolamine util 98.4 1.4E-06 3.1E-11 55.6 7.2 98 30-152 41-143 (148)
306 PLN00116 translation elongatio 98.4 1.9E-06 4.1E-11 72.0 9.5 67 25-96 97-163 (843)
307 KOG3886|consensus 98.4 1.2E-06 2.7E-11 61.7 6.7 85 12-98 38-131 (295)
308 PTZ00416 elongation factor 2; 98.4 2.2E-06 4.8E-11 71.5 9.2 67 25-96 91-157 (836)
309 TIGR00750 lao LAO/AO transport 98.4 2.6E-06 5.7E-11 63.2 8.6 112 22-153 123-236 (300)
310 COG0480 FusA Translation elong 98.4 2.9E-06 6.3E-11 69.1 8.9 89 17-110 66-158 (697)
311 cd01852 AIG1 AIG1 (avrRpt2-ind 98.3 1.1E-05 2.3E-10 56.2 10.4 84 12-97 35-130 (196)
312 TIGR00073 hypB hydrogenase acc 98.3 2.9E-06 6.2E-11 59.6 7.0 103 25-154 102-206 (207)
313 cd01850 CDC_Septin CDC/Septin. 98.3 7.1E-06 1.5E-10 60.2 9.2 82 10-97 43-157 (276)
314 PRK01889 GTPase RsgA; Reviewed 98.2 1.2E-05 2.7E-10 60.9 9.7 84 47-151 110-193 (356)
315 COG3596 Predicted GTPase [Gene 98.1 2.4E-05 5.2E-10 56.6 8.3 124 22-155 83-222 (296)
316 PF06858 NOG1: Nucleolar GTP-b 98.1 1.2E-05 2.7E-10 44.3 4.9 43 50-94 14-58 (58)
317 KOG0461|consensus 98.1 4.2E-05 9.1E-10 57.2 9.1 110 26-154 70-192 (522)
318 cd01882 BMS1 Bms1. Bms1 is an 98.1 2.8E-05 6.1E-10 55.4 7.7 102 23-142 80-183 (225)
319 KOG0466|consensus 98.0 9.1E-06 2E-10 59.7 4.8 109 26-155 125-241 (466)
320 KOG0468|consensus 98.0 1.1E-05 2.3E-10 64.7 5.3 66 26-96 197-262 (971)
321 KOG0460|consensus 97.9 0.0001 2.2E-09 55.0 7.9 113 24-154 115-244 (449)
322 PF00350 Dynamin_N: Dynamin fa 97.8 5.8E-05 1.3E-09 50.9 5.9 64 26-93 101-168 (168)
323 KOG0459|consensus 97.8 2.1E-05 4.6E-10 59.7 3.8 128 11-147 142-278 (501)
324 KOG0464|consensus 97.7 8.9E-06 1.9E-10 62.1 0.5 87 18-109 94-183 (753)
325 KOG3905|consensus 97.7 0.00084 1.8E-08 50.0 10.2 132 9-153 77-288 (473)
326 COG1162 Predicted GTPases [Gen 97.7 0.00049 1.1E-08 50.7 8.8 90 45-153 75-165 (301)
327 KOG0465|consensus 97.6 0.00017 3.7E-09 57.4 6.4 74 19-97 97-170 (721)
328 PF05783 DLIC: Dynein light in 97.6 0.0011 2.3E-08 52.2 10.6 135 7-154 48-263 (472)
329 PTZ00258 GTP-binding protein; 97.6 0.001 2.2E-08 51.1 10.3 35 26-60 85-126 (390)
330 COG0378 HypB Ni2+-binding GTPa 97.6 0.0003 6.5E-09 48.6 6.6 100 26-153 97-199 (202)
331 smart00053 DYNc Dynamin, GTPas 97.6 0.00068 1.5E-08 48.8 8.4 68 26-97 125-206 (240)
332 KOG1424|consensus 97.6 0.00023 4.9E-09 55.6 6.2 78 39-139 165-244 (562)
333 COG5258 GTPBP1 GTPase [General 97.5 0.0028 6E-08 48.4 11.0 122 24-150 199-334 (527)
334 smart00010 small_GTPase Small 97.4 0.00055 1.2E-08 43.4 5.6 56 39-97 36-91 (124)
335 KOG0705|consensus 97.4 0.00083 1.8E-08 53.1 7.1 129 4-153 52-187 (749)
336 KOG0447|consensus 97.4 0.0083 1.8E-07 47.9 12.5 94 13-110 396-508 (980)
337 KOG0410|consensus 97.4 0.00038 8.3E-09 51.7 4.9 114 12-152 211-338 (410)
338 KOG1707|consensus 97.3 0.0034 7.4E-08 50.0 10.2 75 18-97 464-540 (625)
339 KOG1143|consensus 97.3 0.0031 6.6E-08 48.0 8.7 120 26-150 249-383 (591)
340 TIGR00991 3a0901s02IAP34 GTP-b 97.3 0.0057 1.2E-07 45.6 10.1 77 19-96 79-166 (313)
341 cd01853 Toc34_like Toc34-like 97.3 0.003 6.6E-08 45.7 8.6 78 17-96 70-162 (249)
342 PRK10463 hydrogenase nickel in 97.2 0.00045 9.7E-09 50.9 4.0 56 83-153 230-287 (290)
343 PF03308 ArgK: ArgK protein; 97.2 0.0011 2.4E-08 47.9 5.5 107 24-153 120-228 (266)
344 cd04178 Nucleostemin_like Nucl 97.2 0.00081 1.7E-08 45.9 4.7 44 51-97 1-44 (172)
345 KOG2484|consensus 97.1 0.001 2.3E-08 50.6 5.3 73 35-110 132-204 (435)
346 COG1161 Predicted GTPases [Gen 97.1 0.0027 5.8E-08 47.7 7.1 92 33-147 17-109 (322)
347 KOG0467|consensus 97.1 0.0013 2.7E-08 53.8 5.4 77 11-95 53-136 (887)
348 KOG3887|consensus 96.8 0.012 2.5E-07 42.4 7.6 69 26-96 75-148 (347)
349 cd03110 Fer4_NifH_child This p 96.7 0.021 4.6E-07 38.9 8.7 79 24-110 91-169 (179)
350 PF04548 AIG1: AIG1 family; I 96.7 0.026 5.6E-07 39.8 9.3 84 13-98 36-131 (212)
351 KOG1954|consensus 96.6 0.007 1.5E-07 46.0 6.0 68 26-97 147-225 (532)
352 TIGR02836 spore_IV_A stage IV 96.5 0.063 1.4E-06 41.9 10.7 47 44-94 138-191 (492)
353 PF05049 IIGP: Interferon-indu 96.4 0.0099 2.1E-07 45.5 5.9 113 26-155 86-218 (376)
354 COG1703 ArgK Putative periplas 96.4 0.032 7E-07 41.3 8.1 108 24-153 142-252 (323)
355 KOG0463|consensus 96.3 0.029 6.3E-07 43.0 7.7 118 26-150 219-353 (641)
356 KOG2423|consensus 96.1 0.051 1.1E-06 41.9 8.0 67 40-109 201-270 (572)
357 COG3640 CooC CO dehydrogenase 95.4 0.034 7.3E-07 39.8 4.6 69 21-96 129-198 (255)
358 KOG2486|consensus 95.4 0.074 1.6E-06 39.1 6.4 112 25-151 182-312 (320)
359 cd02038 FleN-like FleN is a me 95.2 0.091 2E-06 34.4 6.0 65 26-95 45-109 (139)
360 TIGR00993 3a0901s04IAP86 chlor 95.2 0.18 3.9E-06 41.6 8.5 77 21-97 161-250 (763)
361 cd01900 YchF YchF subfamily. 95.2 0.07 1.5E-06 39.2 5.8 50 11-60 30-103 (274)
362 KOG0469|consensus 94.8 0.096 2.1E-06 41.7 5.8 77 25-109 97-179 (842)
363 KOG2485|consensus 94.7 0.11 2.4E-06 38.7 5.8 75 29-110 25-100 (335)
364 TIGR00064 ftsY signal recognit 94.6 0.19 4.1E-06 36.9 6.7 67 24-97 153-231 (272)
365 PHA02518 ParA-like protein; Pr 94.3 0.17 3.7E-06 35.2 5.9 68 24-96 75-146 (211)
366 cd03111 CpaE_like This protein 94.2 0.32 7E-06 30.3 6.3 62 27-92 44-106 (106)
367 PF00735 Septin: Septin; Inte 93.9 0.67 1.5E-05 34.3 8.5 43 49-97 113-156 (281)
368 TIGR03348 VI_IcmF type VI secr 93.6 0.26 5.7E-06 43.4 6.7 71 26-97 161-257 (1169)
369 PRK10416 signal recognition pa 93.5 0.4 8.7E-06 36.1 6.8 66 24-96 195-272 (318)
370 COG4963 CpaE Flp pilus assembl 93.4 0.53 1.1E-05 36.0 7.2 83 25-111 217-299 (366)
371 PF14331 ImcF-related_N: ImcF- 93.2 0.48 1E-05 34.7 6.6 48 49-97 25-83 (266)
372 PRK09601 GTP-binding protein Y 93.1 0.37 8E-06 37.0 6.1 50 11-60 34-107 (364)
373 cd02036 MinD Bacterial cell di 93.1 1.2 2.6E-05 29.9 8.2 65 27-97 64-128 (179)
374 PRK14974 cell division protein 93.0 0.99 2.2E-05 34.3 8.3 67 24-97 221-293 (336)
375 cd03112 CobW_like The function 93.0 0.22 4.7E-06 33.4 4.3 65 25-95 86-158 (158)
376 TIGR01425 SRP54_euk signal rec 92.1 0.6 1.3E-05 36.6 6.2 66 24-96 181-252 (429)
377 KOG0448|consensus 92.0 0.54 1.2E-05 38.7 5.9 65 27-97 207-275 (749)
378 KOG1486|consensus 91.8 0.68 1.5E-05 33.9 5.7 48 18-65 101-155 (364)
379 COG5019 CDC3 Septin family pro 91.6 3.3 7.2E-05 31.8 9.4 82 10-97 62-176 (373)
380 cd03114 ArgK-like The function 91.5 0.56 1.2E-05 31.1 4.8 59 24-94 90-148 (148)
381 cd03115 SRP The signal recogni 90.6 2.2 4.8E-05 28.7 7.2 67 24-97 81-153 (173)
382 PF11111 CENP-M: Centromere pr 89.9 3.2 6.8E-05 28.5 7.3 86 49-153 64-151 (176)
383 PRK13849 putative crown gall t 89.3 1.9 4.2E-05 30.8 6.3 68 24-94 82-151 (231)
384 KOG1487|consensus 89.2 0.28 6E-06 35.9 1.9 49 84-154 232-280 (358)
385 KOG0780|consensus 89.0 2.3 4.9E-05 33.1 6.7 53 23-75 181-239 (483)
386 TIGR03371 cellulose_yhjQ cellu 88.8 1.9 4.1E-05 30.7 6.1 68 26-97 115-182 (246)
387 cd02037 MRP-like MRP (Multiple 88.6 4.6 9.9E-05 27.1 7.6 66 24-95 66-133 (169)
388 cd02032 Bchl_like This family 87.8 2.1 4.5E-05 31.1 5.9 69 25-95 115-184 (267)
389 PRK13185 chlL protochlorophyll 87.8 1.9 4.1E-05 31.4 5.6 69 24-94 116-185 (270)
390 cd02042 ParA ParA and ParB of 87.8 2.3 4.9E-05 25.9 5.3 45 26-73 40-84 (104)
391 COG0523 Putative GTPases (G3E 87.5 4.7 0.0001 30.5 7.6 79 25-109 84-171 (323)
392 TIGR01968 minD_bact septum sit 86.3 3.1 6.7E-05 29.8 6.0 64 26-95 112-175 (261)
393 TIGR01007 eps_fam capsular exo 85.9 4.4 9.6E-05 28.1 6.4 67 25-96 127-193 (204)
394 cd04170 EF-G_bact Elongation f 85.1 2 4.3E-05 31.3 4.5 29 127-155 238-266 (268)
395 TIGR01969 minD_arch cell divis 84.0 5.3 0.00011 28.4 6.3 66 25-96 108-173 (251)
396 CHL00175 minD septum-site dete 83.6 4.4 9.6E-05 29.6 5.8 79 25-109 126-209 (281)
397 cd02117 NifH_like This family 83.2 4.1 9E-05 28.5 5.4 72 24-96 115-188 (212)
398 KOG2655|consensus 82.7 20 0.00044 27.7 9.5 43 49-97 129-172 (366)
399 COG1149 MinD superfamily P-loo 82.0 12 0.00026 27.7 7.3 76 26-113 164-240 (284)
400 KOG1547|consensus 82.0 12 0.00026 27.4 7.2 43 49-97 155-198 (336)
401 PF10087 DUF2325: Uncharacteri 81.9 9 0.00019 23.3 5.9 58 25-89 23-81 (97)
402 PRK00771 signal recognition pa 81.8 5.2 0.00011 31.6 5.9 64 26-96 176-245 (437)
403 PRK10818 cell division inhibit 81.4 6.6 0.00014 28.5 6.0 69 25-96 113-186 (270)
404 TIGR00959 ffh signal recogniti 81.3 4.6 0.0001 31.8 5.4 64 24-95 181-251 (428)
405 TIGR01281 DPOR_bchL light-inde 81.2 4.8 0.0001 29.2 5.2 71 24-96 114-185 (268)
406 CHL00072 chlL photochlorophyll 80.7 6.7 0.00014 29.1 5.9 69 25-95 115-184 (290)
407 PF01656 CbiA: CobQ/CobB/MinD/ 80.7 2.2 4.7E-05 29.0 3.2 68 26-97 95-162 (195)
408 COG3523 IcmF Type VI protein s 80.3 3.9 8.5E-05 36.3 5.0 71 26-97 174-270 (1188)
409 KOG1534|consensus 79.5 5.9 0.00013 28.4 4.9 121 26-150 98-246 (273)
410 COG0541 Ffh Signal recognition 77.4 10 0.00022 30.0 6.0 52 24-75 181-238 (451)
411 PRK10867 signal recognition pa 77.1 11 0.00024 29.8 6.3 64 24-95 182-252 (433)
412 TIGR03815 CpaE_hom_Actino heli 77.0 15 0.00033 27.5 7.0 78 25-110 204-281 (322)
413 cd02035 ArsA ArsA ATPase funct 77.0 19 0.00041 25.3 7.1 67 26-96 114-183 (217)
414 PF00448 SRP54: SRP54-type pro 76.9 8.7 0.00019 26.8 5.2 67 24-97 82-154 (196)
415 cd01886 EF-G Elongation factor 76.7 5.2 0.00011 29.4 4.3 29 127-155 240-268 (270)
416 TIGR02475 CobW cobalamin biosy 76.1 16 0.00034 27.9 6.8 37 25-61 92-135 (341)
417 TIGR00092 GTP-binding protein 75.7 10 0.00022 29.3 5.6 49 12-60 36-108 (368)
418 PF07015 VirC1: VirC1 protein; 74.5 8.3 0.00018 27.7 4.6 68 25-95 83-152 (231)
419 PRK13556 azoreductase; Provisi 73.5 11 0.00024 26.3 5.1 50 43-92 83-144 (208)
420 PRK13555 azoreductase; Provisi 72.6 11 0.00025 26.5 5.0 51 42-92 82-144 (208)
421 PF07894 DUF1669: Protein of u 71.7 6.9 0.00015 29.0 3.8 64 26-96 119-187 (284)
422 KOG1486|consensus 71.6 12 0.00026 27.6 4.8 49 84-154 239-287 (364)
423 cd02040 NifH NifH gene encodes 70.9 14 0.0003 26.7 5.3 68 25-93 116-185 (270)
424 PF08438 MMR_HSR1_C: GTPase of 70.5 2.6 5.6E-05 26.6 1.2 9 89-97 1-9 (109)
425 cd04169 RF3 RF3 subfamily. Pe 70.3 5.7 0.00012 29.1 3.2 28 128-155 238-265 (267)
426 COG0012 Predicted GTPase, prob 69.8 10 0.00023 29.2 4.5 35 26-60 67-108 (372)
427 PRK11537 putative GTP-binding 69.1 13 0.00028 28.1 4.8 66 26-97 91-164 (318)
428 PF03358 FMN_red: NADPH-depend 68.3 30 0.00065 22.5 7.2 70 25-94 31-117 (152)
429 cd01851 GBP Guanylate-binding 68.1 40 0.00088 23.9 7.1 54 11-64 42-106 (224)
430 TIGR03566 FMN_reduc_MsuE FMN r 68.0 11 0.00024 25.5 4.1 50 42-92 61-110 (174)
431 cd01983 Fer4_NifH The Fer4_Nif 66.4 23 0.0005 20.4 6.2 64 27-91 35-99 (99)
432 PF09419 PGP_phosphatase: Mito 65.7 40 0.00087 23.0 8.4 86 47-151 36-128 (168)
433 TIGR03567 FMN_reduc_SsuE FMN r 65.6 13 0.00029 25.0 4.1 50 42-92 58-107 (171)
434 PRK14722 flhF flagellar biosyn 64.2 27 0.00059 27.1 5.8 73 24-96 214-294 (374)
435 TIGR01005 eps_transp_fam exopo 63.8 38 0.00081 28.8 7.1 67 25-96 655-721 (754)
436 PRK04930 glutathione-regulated 62.8 29 0.00063 24.0 5.3 49 44-92 56-112 (184)
437 KOG4273|consensus 62.7 7 0.00015 28.7 2.3 44 50-96 79-122 (418)
438 COG0552 FtsY Signal recognitio 62.2 37 0.00079 26.0 6.0 64 24-95 220-296 (340)
439 PRK00170 azoreductase; Reviewe 61.7 25 0.00054 24.1 4.9 49 44-92 81-141 (201)
440 PRK00871 glutathione-regulated 60.8 29 0.00062 23.8 4.9 52 43-94 49-108 (176)
441 PRK09739 hypothetical protein; 59.9 25 0.00053 24.4 4.6 52 42-93 72-130 (199)
442 PRK13505 formate--tetrahydrofo 59.7 22 0.00049 29.0 4.8 29 82-110 371-399 (557)
443 KOG1249|consensus 59.4 22 0.00047 29.0 4.6 24 131-154 187-210 (572)
444 PF02492 cobW: CobW/HypB/UreG, 58.3 11 0.00024 25.6 2.6 67 25-98 84-156 (178)
445 COG1908 FrhD Coenzyme F420-red 57.5 16 0.00035 23.5 3.0 29 126-154 93-121 (132)
446 PRK10569 NAD(P)H-dependent FMN 56.8 23 0.0005 24.6 4.0 50 42-92 59-108 (191)
447 COG0012 Predicted GTPase, prob 56.6 19 0.00042 27.8 3.8 17 81-97 204-220 (372)
448 PRK09601 GTP-binding protein Y 56.4 26 0.00056 27.1 4.5 16 80-95 196-211 (364)
449 TIGR03029 EpsG chain length de 54.8 73 0.0016 23.1 6.6 50 25-76 212-261 (274)
450 PRK10037 cell division protein 54.5 57 0.0012 23.4 5.9 59 24-94 116-174 (250)
451 KOG0781|consensus 54.4 42 0.0009 27.2 5.3 73 24-97 465-544 (587)
452 KOG2743|consensus 54.1 60 0.0013 24.8 5.9 35 26-60 146-188 (391)
453 PRK12727 flagellar biosynthesi 53.4 56 0.0012 26.9 6.1 65 24-97 427-498 (559)
454 PRK06731 flhF flagellar biosyn 52.8 25 0.00054 26.0 3.8 66 25-97 154-225 (270)
455 PRK12726 flagellar biosynthesi 51.9 95 0.0021 24.5 6.9 66 24-96 284-355 (407)
456 PRK13660 hypothetical protein; 51.9 53 0.0011 22.8 5.1 49 38-89 118-166 (182)
457 PRK13235 nifH nitrogenase redu 51.2 59 0.0013 23.7 5.6 70 24-94 116-187 (274)
458 PRK13869 plasmid-partitioning 50.9 63 0.0014 25.3 6.0 70 25-97 251-328 (405)
459 PRK11670 antiporter inner memb 50.3 1.1E+02 0.0023 23.8 7.0 68 24-96 214-282 (369)
460 KOG4530|consensus 50.2 80 0.0017 21.6 6.2 48 40-92 77-127 (199)
461 TIGR01287 nifH nitrogenase iro 49.7 31 0.00068 25.1 4.0 48 25-73 115-163 (275)
462 TIGR03018 pepcterm_TyrKin exop 47.6 81 0.0017 21.9 5.7 47 27-75 150-196 (207)
463 PRK07116 flavodoxin; Provision 47.3 82 0.0018 20.9 7.3 61 46-110 73-133 (160)
464 PRK13705 plasmid-partitioning 46.1 52 0.0011 25.6 4.8 70 25-97 234-308 (388)
465 COG5192 BMS1 GTP-binding prote 46.1 1.8E+02 0.0039 24.5 8.0 65 26-97 113-177 (1077)
466 PF09547 Spore_IV_A: Stage IV 45.0 76 0.0016 25.4 5.4 39 52-94 148-191 (492)
467 PHA02519 plasmid partition pro 44.6 47 0.001 25.9 4.4 71 24-97 233-308 (387)
468 PRK06756 flavodoxin; Provision 43.9 82 0.0018 20.4 5.0 44 47-91 47-91 (148)
469 PRK01355 azoreductase; Reviewe 43.6 87 0.0019 21.7 5.3 34 43-76 71-104 (199)
470 COG0431 Predicted flavoprotein 41.9 65 0.0014 22.1 4.4 53 40-96 58-113 (184)
471 PF14784 ECIST_Cterm: C-termin 41.3 79 0.0017 20.5 4.4 41 49-89 83-124 (126)
472 COG2403 Predicted GTPase [Gene 40.6 83 0.0018 24.7 5.0 87 6-108 197-293 (449)
473 TIGR02690 resist_ArsH arsenica 40.4 93 0.002 22.2 5.0 50 42-91 83-136 (219)
474 PRK13233 nifH nitrogenase redu 40.0 53 0.0012 23.8 3.9 67 25-93 118-187 (275)
475 KOG0052|consensus 39.8 38 0.00083 26.4 3.1 71 25-97 81-156 (391)
476 PF02525 Flavodoxin_2: Flavodo 38.3 52 0.0011 22.6 3.5 49 45-93 74-136 (199)
477 COG1512 Beta-propeller domains 38.1 1.4E+02 0.0031 22.1 5.8 47 48-94 62-109 (271)
478 TIGR03453 partition_RepA plasm 38.1 1.2E+02 0.0026 23.5 5.7 34 25-60 234-267 (387)
479 PRK06242 flavodoxin; Provision 37.6 62 0.0013 21.0 3.6 60 46-109 40-99 (150)
480 PF00255 GSHPx: Glutathione pe 37.3 1.1E+02 0.0023 19.2 4.8 47 91-151 62-108 (108)
481 PRK12724 flagellar biosynthesi 37.2 1.2E+02 0.0026 24.2 5.6 66 24-96 298-372 (432)
482 PRK13234 nifH nitrogenase redu 35.7 82 0.0018 23.4 4.4 69 24-93 118-188 (295)
483 PRK11889 flhF flagellar biosyn 35.3 65 0.0014 25.6 3.8 66 25-97 320-391 (436)
484 PRK13230 nitrogenase reductase 35.2 64 0.0014 23.5 3.7 48 24-72 115-163 (279)
485 PRK05569 flavodoxin; Provision 34.5 1E+02 0.0023 19.7 4.3 46 46-92 45-92 (141)
486 PRK05703 flhF flagellar biosyn 34.5 2.3E+02 0.0051 22.4 7.2 67 24-97 298-371 (424)
487 PRK12723 flagellar biosynthesi 34.1 2.3E+02 0.005 22.2 6.6 66 24-96 253-325 (388)
488 PF05014 Nuc_deoxyrib_tr: Nucl 33.4 1E+02 0.0022 19.0 4.0 46 44-95 56-101 (113)
489 COG1419 FlhF Flagellar GTP-bin 32.6 2.4E+02 0.0053 22.3 6.5 66 24-96 280-351 (407)
490 PRK13236 nitrogenase reductase 32.5 1.2E+02 0.0026 22.5 4.8 71 24-95 120-192 (296)
491 cd07393 MPP_DR1119 Deinococcus 32.0 1.6E+02 0.0035 20.8 5.3 50 40-92 32-81 (232)
492 TIGR02016 BchX chlorophyllide 30.5 1.6E+02 0.0034 22.0 5.1 69 25-95 122-194 (296)
493 PF00532 Peripla_BP_1: Peripla 30.3 2.2E+02 0.0047 20.8 6.1 62 24-96 30-92 (279)
494 COG4474 Uncharacterized protei 30.1 1.7E+02 0.0037 20.1 4.7 30 39-68 119-148 (180)
495 PRK04452 acetyl-CoA decarbonyl 28.8 2.7E+02 0.0058 21.3 8.5 64 26-92 50-133 (319)
496 PRK14723 flhF flagellar biosyn 28.7 1.6E+02 0.0035 25.4 5.3 69 24-96 262-336 (767)
497 PF03709 OKR_DC_1_N: Orn/Lys/A 28.5 1E+02 0.0022 19.3 3.4 43 48-93 35-77 (115)
498 PF12098 DUF3574: Protein of u 28.0 26 0.00057 21.9 0.6 33 28-60 38-70 (104)
499 KOG3859|consensus 27.9 1.1E+02 0.0024 23.1 3.8 30 6-35 71-104 (406)
500 PRK13232 nifH nitrogenase redu 27.8 1.3E+02 0.0029 21.8 4.3 69 24-94 115-185 (273)
No 1
>KOG0070|consensus
Probab=100.00 E-value=3.2e-32 Score=181.91 Aligned_cols=142 Identities=32% Similarity=0.597 Sum_probs=134.4
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|||-+++..+.||+|+++..+++++++|++||.+||.++++.|++|+++.+++|||+|+++.+.+.+++..+..++.+..
T Consensus 36 kLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~ 115 (181)
T KOG0070|consen 36 KLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPE 115 (181)
T ss_pred eeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcc
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+.|+++.+||.|+++..+..++...+.+ .++..+.|++..|||.+|+|+.|.++|+.+.+
T Consensus 116 l~~~~llv~aNKqD~~~als~~ei~~~L~l------------~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 116 LRNAPLLVFANKQDLPGALSAAEITNKLGL------------HSLRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred cCCceEEEEechhhccccCCHHHHHhHhhh------------hccCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 889999999999999999999999999988 34677899999999999999999999998765
No 2
>KOG0084|consensus
Probab=99.98 E-value=9.6e-32 Score=181.00 Aligned_cols=136 Identities=21% Similarity=0.336 Sum_probs=118.7
Q ss_pred CCCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 1 MLKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 1 ~l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
|+++|.+ +.|..|+|+. +++++++| +++++|||+||++|+....+||++|+|||+|||+++.++|..+..|+.++
T Consensus 28 Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 28 RFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEI 107 (205)
T ss_pred hhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHh
Confidence 6788885 6889999985 88888887 89999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHh
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
-++ ...++|.+||+||+|+.+ .++.++...+... .+++ ++++|||++.|++++|..|+.
T Consensus 108 ~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~-----------------~~~~~f~ETSAK~~~NVe~~F~~la~ 169 (205)
T KOG0084|consen 108 DRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE-----------------LGIPIFLETSAKDSTNVEDAFLTLAK 169 (205)
T ss_pred hhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh-----------------cCCcceeecccCCccCHHHHHHHHHH
Confidence 654 446789999999999987 5677777666665 3445 999999999999999999886
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 170 ~l 171 (205)
T KOG0084|consen 170 EL 171 (205)
T ss_pred HH
Confidence 54
No 3
>KOG0071|consensus
Probab=99.97 E-value=1e-30 Score=167.18 Aligned_cols=142 Identities=29% Similarity=0.561 Sum_probs=134.0
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
+||-++...+.||+|++++++.+++++|++||.+|++..+++|++||.++.++|||+|+.+.+..++++..+..+++++.
T Consensus 36 KLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~e 115 (180)
T KOG0071|consen 36 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDRE 115 (180)
T ss_pred HHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++.+||.|+++..+++++..++++. .+..++|-+.++||.+|.|+.|.+.||.+.+
T Consensus 116 m~~~~~LvlANkQDlp~A~~pqei~d~leLe------------~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 116 MRDAIILILANKQDLPDAMKPQEIQDKLELE------------RIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred hhcceEEEEecCcccccccCHHHHHHHhccc------------cccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999984 3677889999999999999999999998754
No 4
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=6.7e-30 Score=175.91 Aligned_cols=142 Identities=31% Similarity=0.565 Sum_probs=122.3
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|+..+++..+.||+|++...++.+++++++||+||+++++.+|..|++++|++|+|+|++++.++..+..++..+++...
T Consensus 36 ~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~ 115 (181)
T PLN00223 36 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDE 115 (181)
T ss_pred HHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHh
Confidence 35567777889999999888888899999999999999999999999999999999999999999998888888876555
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++|+||+|+.+....+++...++.. ....+.+.+++|||++|+|+.++|+||.+.+
T Consensus 116 ~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 116 LRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177 (181)
T ss_pred hCCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------ccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence 5689999999999998877777877777652 1233566788999999999999999998764
No 5
>KOG0092|consensus
Probab=99.97 E-value=1.6e-30 Score=174.47 Aligned_cols=137 Identities=18% Similarity=0.325 Sum_probs=121.2
Q ss_pred CCCCCCCCc-ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 1 MLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 1 ~l~~~~~~~-~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
|+..|++.. ..||+|.. ..++.+++ ++|++|||+||++|+++.+.||++|+++|+|||+++.+||..++.|+.++
T Consensus 24 Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL 103 (200)
T KOG0092|consen 24 RFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKEL 103 (200)
T ss_pred hhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHH
Confidence 456677766 48999975 67777776 89999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..... ++.-+.|||||+||.+ ++..++...+.+.. ++.|+++|||+|.|++++|..+.+.
T Consensus 104 ~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~-----------------gll~~ETSAKTg~Nv~~if~~Ia~~ 165 (200)
T KOG0092|consen 104 QRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQ-----------------GLLFFETSAKTGENVNEIFQAIAEK 165 (200)
T ss_pred HhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhc-----------------CCEEEEEecccccCHHHHHHHHHHh
Confidence 76554 7788899999999987 78888888888774 4689999999999999999999987
Q ss_pred cC
Q psy2161 154 ID 155 (155)
Q Consensus 154 i~ 155 (155)
++
T Consensus 166 lp 167 (200)
T KOG0092|consen 166 LP 167 (200)
T ss_pred cc
Confidence 75
No 6
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.7e-29 Score=171.99 Aligned_cols=141 Identities=26% Similarity=0.540 Sum_probs=120.2
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
||..+++..+.||+|.....+...++++++|||||+++++..|..++++||++++|+|++++.++++...|+.++++...
T Consensus 28 ~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~ 107 (168)
T cd04149 28 KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDRE 107 (168)
T ss_pred HHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHh
Confidence 45667777889999998878888889999999999999999999999999999999999999999999888888876544
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..++|+++|+||+|+.+....+++.+.++.. ......+.+++|||++|.|++++|+||.++
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~SAk~g~gv~~~~~~l~~~ 168 (168)
T cd04149 108 MRDALLLVFANKQDLPDAMKPHEIQEKLGLT------------RIRDRNWYVQPSCATSGDGLYEGLTWLSSN 168 (168)
T ss_pred hcCCcEEEEEECcCCccCCCHHHHHHHcCCC------------ccCCCcEEEEEeeCCCCCChHHHHHHHhcC
Confidence 5678999999999997766777887776542 123345789999999999999999999763
No 7
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.9e-29 Score=171.84 Aligned_cols=142 Identities=30% Similarity=0.567 Sum_probs=121.3
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|+..|++..+.||+|.....+..+++++++|||||+.+++..|..|+++||++++|+|++++.+++....|+..+++...
T Consensus 32 ~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~ 111 (175)
T smart00177 32 KLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE 111 (175)
T ss_pred HHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh
Confidence 45567777889999998878888889999999999999999999999999999999999999999999999988876544
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..++|+++|+||+|+.+..+..++...++.. .+..+.+.++++||++|.|++++|+||.+.+
T Consensus 112 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 112 LRDAVILVFANKQDLPDAMKAAEITEKLGLH------------SIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred hcCCcEEEEEeCcCcccCCCHHHHHHHhCcc------------ccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 4678999999999998766777777766652 2334567788999999999999999998754
No 8
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=4.2e-29 Score=168.57 Aligned_cols=140 Identities=32% Similarity=0.571 Sum_probs=117.4
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|++.+++..+.||+|++...+..+++++.+||+||+.++...|..++++||+++||+|++++.++..+..|+..+++...
T Consensus 19 ~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~ 98 (159)
T cd04150 19 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDE 98 (159)
T ss_pred HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHH
Confidence 35567777889999998878888889999999999999999999999999999999999999999999888888875544
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..+.|+++++||+|+.+.....++...+... .+..+.+.+++|||++|.|++++|+||.+
T Consensus 99 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 99 LRDAVLLVFANKQDLPNAMSAAEVTDKLGLH------------SLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred hcCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------ccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 4568999999999997655566666655431 13345678899999999999999999975
No 9
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=1e-29 Score=174.13 Aligned_cols=141 Identities=41% Similarity=0.739 Sum_probs=128.2
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|+.+....+.||.|++...+.++++++.+||.||+..+++.|+.|+++++++|||+|+++++.+.+++..+.+++++...
T Consensus 34 l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~ 113 (175)
T PF00025_consen 34 LKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPEL 113 (175)
T ss_dssp HHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGG
T ss_pred hhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhc
Confidence 45566677999999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++++||+|+.+..+..++...+... .+. .+.+.++.|||++|.|+.|.++||.+++
T Consensus 114 ~~~piLIl~NK~D~~~~~~~~~i~~~l~l~------------~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 114 KDIPILILANKQDLPDAMSEEEIKEYLGLE------------KLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTSEEEEEEESTTSTTSSTHHHHHHHTTGG------------GTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ccceEEEEeccccccCcchhhHHHhhhhhh------------hcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 789999999999999888999999988873 233 6789999999999999999999999864
No 10
>KOG0073|consensus
Probab=99.96 E-value=7.4e-29 Score=162.38 Aligned_cols=141 Identities=30% Similarity=0.550 Sum_probs=127.5
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|-+.....+.||.|++++++.++++++++||.+||...+++|+.||..+|++|+|+|++++.++++....+.+++.....
T Consensus 36 l~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerl 115 (185)
T KOG0073|consen 36 LLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERL 115 (185)
T ss_pred hcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhh
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999987778
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++++||.|+.+..+.+++...+++. ++ ....|..+.|||.+|+++.+.++||++.+
T Consensus 116 aG~~~Lvlank~dl~~~l~~~~i~~~~~L~------------~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 116 AGAPLLVLANKQDLPGALSLEEISKALDLE------------ELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred cCCceEEEEecCcCccccCHHHHHHhhCHH------------HhccccCceEEEEeccccccHHHHHHHHHHHH
Confidence 889999999999999888888888877763 23 56789999999999999999999998754
No 11
>KOG0094|consensus
Probab=99.96 E-value=5.1e-29 Score=167.58 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=114.2
Q ss_pred CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.+.+ ..|.||+|+. ..++.+.+ ++|++|||+||++|+.+.+.|++++.++|+|||+++.++|+....|++++.+.
T Consensus 44 yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e 123 (221)
T KOG0094|consen 44 YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRE 123 (221)
T ss_pred HhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence 3443 4789999985 77787766 89999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+...++-++|||||.||.+ +++.++-...... .+..|+++||+.|.||.++|..++..++
T Consensus 124 ~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke-----------------l~a~f~etsak~g~NVk~lFrrIaa~l~ 185 (221)
T KOG0094|consen 124 RGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE-----------------LNAEFIETSAKAGENVKQLFRRIAAALP 185 (221)
T ss_pred cCCCceEEEEEcccccccchhhhhHHHHHHHHHH-----------------hCcEEEEecccCCCCHHHHHHHHHHhcc
Confidence 8877799999999999987 3344333332222 3458999999999999999999887654
No 12
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.6e-28 Score=168.14 Aligned_cols=142 Identities=30% Similarity=0.583 Sum_probs=119.8
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|+..+++..+.||.|.+...++.+++++++|||||++.++..|..|++++|++|+|+|+++++++.....++..+++...
T Consensus 36 ~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~ 115 (182)
T PTZ00133 36 KLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDE 115 (182)
T ss_pred HHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHh
Confidence 34567777789999998888888889999999999999999999999999999999999999999998888888876544
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..++|+++|+||.|+.+.....++...++.. .+....+.++++||++|.|++++|+||.+.+
T Consensus 116 ~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 116 LRDAVLLVFANKQDLPNAMSTTEVTEKLGLH------------SVRQRNWYIQGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred hcCCCEEEEEeCCCCCCCCCHHHHHHHhCCC------------cccCCcEEEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999997766667776666551 2334567788999999999999999998754
No 13
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=3.1e-28 Score=165.81 Aligned_cols=143 Identities=31% Similarity=0.544 Sum_probs=120.7
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
||.++.+..+.||+|.....++++++++.+|||||+..++..|..+++++|++++|+|++++.+++++..|+..+++...
T Consensus 18 ~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~ 97 (169)
T cd04158 18 KLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE 97 (169)
T ss_pred HHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh
Confidence 35667777899999998888888899999999999999999999999999999999999999999999999999986555
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++|+||+|+.+..+.+++.+.+..... .....+.+++|||++|.|++++|+||.+.+
T Consensus 98 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 98 LRDALLLIFANKQDVAGALSVEEMTELLSLHKL-----------CCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred hCCCCEEEEEeCcCcccCCCHHHHHHHhCCccc-----------cCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 566899999999999776777777776654210 112356789999999999999999998764
No 14
>KOG0075|consensus
Probab=99.96 E-value=4.1e-28 Score=156.41 Aligned_cols=135 Identities=30% Similarity=0.534 Sum_probs=128.0
Q ss_pred CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
.+...||+|++++.+.-+++++.+||.|||+.|+++|..|++++++++||+|+++++.++..+..+..++..+.+.++|+
T Consensus 46 ~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~ 125 (186)
T KOG0075|consen 46 LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPL 125 (186)
T ss_pred hhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcE
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++++||.|++++.+...+...+++ .++..+.+-++.+|+++..|++-+.+||.+.
T Consensus 126 LVLGnK~d~~~AL~~~~li~rmgL------------~sitdREvcC~siScke~~Nid~~~~Wli~h 180 (186)
T KOG0075|consen 126 LVLGNKIDLPGALSKIALIERMGL------------SSITDREVCCFSISCKEKVNIDITLDWLIEH 180 (186)
T ss_pred EEecccccCcccccHHHHHHHhCc------------cccccceEEEEEEEEcCCccHHHHHHHHHHH
Confidence 999999999999999999999998 5678888999999999999999999999875
No 15
>KOG0078|consensus
Probab=99.96 E-value=2e-28 Score=166.94 Aligned_cols=135 Identities=18% Similarity=0.275 Sum_probs=116.9
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..+..|+|+. .++++.++ +++++|||+||++|+.+...||++|+++++|||+++..+|+.+..|+..+.
T Consensus 32 f~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~ 111 (207)
T KOG0078|consen 32 FSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNID 111 (207)
T ss_pred hhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHH
Confidence 445554 4778899985 78888887 899999999999999999999999999999999999999999999999996
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+. ..++|.+|||||+|+.+ .++.+.-.+.... .++.++|+|||+|.||+++|..|++.+
T Consensus 112 e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e-----------------~G~~F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 112 EHA-SDDVVKILVGNKCDLEEKRQVSKERGEALARE-----------------YGIKFFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred hhC-CCCCcEEEeeccccccccccccHHHHHHHHHH-----------------hCCeEEEccccCCCCHHHHHHHHHHHH
Confidence 554 45899999999999987 6777776666665 457999999999999999999998754
No 16
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.2e-27 Score=161.38 Aligned_cols=142 Identities=28% Similarity=0.464 Sum_probs=119.5
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|+++....+.||+|++...+..+++++++||+||+..++.+|..|+++||++++|+|++++.+++.+..|+..+++....
T Consensus 19 l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~ 98 (167)
T cd04161 19 LQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRV 98 (167)
T ss_pred HhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccc
Confidence 44444567899999998889999999999999999999999999999999999999999999999999999999876555
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC------CChHHHHHHHHh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR------QGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------~~i~~~~~~l~~ 152 (155)
.++|+++|+||+|+.+..+..++.+.+....+ .......+.+++|||++| .|+.+.|+||.+
T Consensus 99 ~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 99 SGKPILVLANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 68999999999999887777788777665211 000123578899999998 899999999975
No 17
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.96 E-value=8.6e-28 Score=167.82 Aligned_cols=136 Identities=15% Similarity=0.217 Sum_probs=109.2
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+..+.+ ..+.||+|.. ...+.+++ +++++|||+|+++|+.+|..|+++||++|+|||++++.+|+.+..|+..+.
T Consensus 20 ~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~ 99 (202)
T cd04120 20 FTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID 99 (202)
T ss_pred HHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 456665 4577998764 56778877 899999999999999999999999999999999999999999999998764
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+. ...+.|+++|+||+|+.+ .+...+..+..... .++.+++|||++|.|++++|+++++.+
T Consensus 100 ~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----------------~~~~~~etSAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 100 KY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----------------TGMRFCEASAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred Hh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 33 345799999999999864 34444444333220 246799999999999999999998753
No 18
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.95 E-value=2.5e-27 Score=163.98 Aligned_cols=134 Identities=15% Similarity=0.268 Sum_probs=110.9
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..+.||.+.. ...+.+++ +++++|||+|++.|..++..++++||++++|||++++.+|+.+..|+.++.
T Consensus 26 ~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~ 105 (189)
T cd04121 26 LQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEID 105 (189)
T ss_pred HHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 344554 4566787774 45666776 899999999999999999999999999999999999999999999999996
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ++.|++||+||.|+.. .++.+++...... .++.+++|||++|.|++++|+++++.+
T Consensus 106 ~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~-----------------~~~~~~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 106 EHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER-----------------NGMTFFEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred HhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 543 5799999999999965 4566666665544 456899999999999999999998753
No 19
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=6.2e-27 Score=160.12 Aligned_cols=140 Identities=29% Similarity=0.560 Sum_probs=119.1
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
||..+++..+.||.|.+...+.++++++.+||+||+..+...|..+++++|++++|+|+++++++.....++..++++..
T Consensus 34 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~ 113 (174)
T cd04153 34 QFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED 113 (174)
T ss_pred HHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh
Confidence 35667777789999999888898999999999999999999999999999999999999999899888888888876655
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..++|+++++||+|+.+..+.+++...+... .....++.+++|||++|.|++++|+||.+
T Consensus 114 ~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 114 LRKAVLLVLANKQDLKGAMTPAEISESLGLT------------SIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred hcCCCEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 5679999999999997766666766665531 12335678999999999999999999975
No 20
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=3.5e-27 Score=161.58 Aligned_cols=129 Identities=18% Similarity=0.209 Sum_probs=106.7
Q ss_pred CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
+.+.||+|... ..+.+++ +++.||||||++++..++..|+++||++|+|||++++.+|+.+..|+..++... ..+
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~ 85 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD 85 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 56899999863 4566665 899999999999999999999999999999999999999999999999987653 256
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+...+....... .++.+++|||++|.|++++|++|.+.+
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~~~~~-----------------~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQKAQE-----------------YNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999864 3444444443332 345789999999999999999999765
No 21
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=9.3e-27 Score=159.00 Aligned_cols=139 Identities=32% Similarity=0.557 Sum_probs=117.2
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++....+.||+|+....+.++++++.+|||||++.++.+|..+++++|++++|+|++++.++.....|+..+++....
T Consensus 34 l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 113 (173)
T cd04154 34 LLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERL 113 (173)
T ss_pred HccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence 44556677889999888888888999999999999999999999999999999999999999999888888888765445
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.++|+++|+||+|+.+....+++...+... ......+++++|||++|.|++++|+|+.+
T Consensus 114 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 114 AGATLLILANKQDLPGALSEEEIREALELD------------KISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred cCCCEEEEEECcccccCCCHHHHHHHhCcc------------ccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 689999999999997765666666666541 12335678999999999999999999875
No 22
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.8e-26 Score=155.53 Aligned_cols=140 Identities=31% Similarity=0.604 Sum_probs=113.4
Q ss_pred CCCCC--CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 2 LKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 2 l~~~~--~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
|.++. ...+.||+|.....+..+++++++|||||+.+++..|..+++++|++++|+|++++.++.....|+..+++..
T Consensus 19 l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~ 98 (162)
T cd04157 19 LKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP 98 (162)
T ss_pred HcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence 44543 4568899998877788888999999999999999999999999999999999999999988888888887643
Q ss_pred C--CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 80 A--LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 80 ~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
. ..++|+++|+||+|+.+.....++...+... ......+.++++||++|.|++++|+||.++
T Consensus 99 ~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~------------~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~~ 162 (162)
T cd04157 99 DIKHRRVPILFFANKMDLPDALTAVKITQLLGLE------------NIKDKPWHIFASNALTGEGLDEGVQWLQAQ 162 (162)
T ss_pred ccccCCCCEEEEEeCccccCCCCHHHHHHHhCCc------------cccCceEEEEEeeCCCCCchHHHHHHHhcC
Confidence 2 2479999999999997655555555555431 112345679999999999999999999764
No 23
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.3e-26 Score=154.79 Aligned_cols=139 Identities=32% Similarity=0.614 Sum_probs=112.6
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|..+....+.||++.+...++..+.++++|||||+..++..|..+++++|++++|+|++++.++.....++..+++....
T Consensus 19 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
T cd04151 19 LQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL 98 (158)
T ss_pred HccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh
Confidence 55666777889999988888888899999999999999999999999999999999999887787776777666554444
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.++|+++|+||+|+.+.....++...+... .....++++++|||++|.|++++|++|++
T Consensus 99 ~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 99 KGAVLLVFANKQDMPGALSEAEISEKLGLS------------ELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCcEEEEEeCCCCCCCCCHHHHHHHhCcc------------ccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 579999999999997654455555544331 12234568999999999999999999976
No 24
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.95 E-value=2e-26 Score=159.02 Aligned_cols=148 Identities=62% Similarity=1.060 Sum_probs=122.8
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
+.++.+..+.||.+++...+.++++++.+||+||+..++..|..+++++|++++|+|++++.++.....++..+++....
T Consensus 37 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~ 116 (184)
T smart00178 37 LKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEEL 116 (184)
T ss_pred HhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhh
Confidence 45566667889999998888889999999999999999999999999999999999999999998888888888765555
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+....+.+++.+.++...... .......+.+.+++|||++|.|++++++||.+.+
T Consensus 117 ~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~-----~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 117 ATVPFLILGNKIDAPYAASEDELRYALGLTNTTG-----SKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred cCCCEEEEEeCccccCCCCHHHHHHHcCCCcccc-----cccccCCceeEEEEeecccCCChHHHHHHHHhhC
Confidence 6899999999999987788888988887632100 0001123577899999999999999999998753
No 25
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.95 E-value=9.6e-27 Score=162.33 Aligned_cols=133 Identities=18% Similarity=0.315 Sum_probs=106.9
Q ss_pred CCCCCCC-cccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~~-~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+..+.+. .+.||+|... ..+.+++ +++++|||+|+++|+.++..|+++++++|+|||++++.+|..+..|+.++.
T Consensus 15 ~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~ 94 (200)
T smart00176 15 HLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLV 94 (200)
T ss_pred HhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 4556654 6889999764 3444444 899999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.. .+.|+++|+||+|+.. .+..+.+ ... ...++.+++|||++|.||.++|+||.+.+
T Consensus 95 ~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~-----------------~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 95 RVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFH-----------------RKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HhC--CCCCEEEEEECcccccccCCHHHH-HHH-----------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 543 5799999999999865 2232222 221 12457899999999999999999998754
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.95 E-value=9.4e-27 Score=161.51 Aligned_cols=148 Identities=16% Similarity=0.247 Sum_probs=105.1
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+..|.+ ..+.||+|.. ...+.+++ +.+++|||+|+++|+.+++.|+++||++|+|||++++.+|+.+. .|+..+.
T Consensus 23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~ 102 (191)
T cd01875 23 YTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVC 102 (191)
T ss_pred HHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 455665 6789999875 33455655 88999999999999999999999999999999999999999996 5877775
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|+++|+||.|+.+.....+..........+..++. ......+ +.+++|||++|.|++++|+++++.+
T Consensus 103 ~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~---~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 103 HH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGG---ALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred hh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHH---HHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 43 247999999999999653211111111110000000000 0011123 6899999999999999999998753
No 27
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.95 E-value=7.7e-27 Score=159.90 Aligned_cols=134 Identities=17% Similarity=0.247 Sum_probs=107.9
Q ss_pred CCCCCCCC-cccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHH
Q psy2161 1 MLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSL 75 (155)
Q Consensus 1 ~l~~~~~~-~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~ 75 (155)
|+.+|++. ++.||+|.. ...+..++ +++++|||+|+++++.++..++++|+++|+|||++++.+|+.+ ..|+.++
T Consensus 20 ~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i 99 (176)
T cd04133 20 CYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPEL 99 (176)
T ss_pred HHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHH
Confidence 35567764 689999875 34566666 8999999999999999999999999999999999999999998 6899988
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCC
Q psy2161 76 LADDALTDVPILILGNKIDIFDA------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQG 142 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 142 (155)
.+.. .+.|+++|+||+|+.+. +..++....... .+. .+++|||++|.|
T Consensus 100 ~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~-----------------~~~~~~~E~SAk~~~n 160 (176)
T cd04133 100 RHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ-----------------IGAAAYIECSSKTQQN 160 (176)
T ss_pred HHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH-----------------cCCCEEEECCCCcccC
Confidence 6543 47999999999999642 333343333332 334 699999999999
Q ss_pred hHHHHHHHHhh
Q psy2161 143 FGNGFRWLANY 153 (155)
Q Consensus 143 i~~~~~~l~~~ 153 (155)
++++|+.+++.
T Consensus 161 V~~~F~~~~~~ 171 (176)
T cd04133 161 VKAVFDAAIKV 171 (176)
T ss_pred HHHHHHHHHHH
Confidence 99999999874
No 28
>KOG0072|consensus
Probab=99.95 E-value=5.1e-27 Score=150.88 Aligned_cols=142 Identities=29% Similarity=0.531 Sum_probs=129.4
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|++-|+...+.||+|++.+++.+++.++++||.+|+-+.+++|+-||.+.|++|||+|.++..........+-.++.+..
T Consensus 37 rlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~e 116 (182)
T KOG0072|consen 37 RLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEE 116 (182)
T ss_pred EcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHh
Confidence 57778999999999999999999999999999999999999999999999999999999999888888888888888888
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+..+++++||.|........++...++. ..++.+.+.++++||.+|.|++++.+||.+.+
T Consensus 117 Lq~a~llv~anKqD~~~~~t~~E~~~~L~l------------~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 117 LQHAKLLVFANKQDYSGALTRSEVLKMLGL------------QKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred hcCceEEEEeccccchhhhhHHHHHHHhCh------------HHHhhheeEEEeeccccccCCcHHHHHHHHHH
Confidence 888999999999999888888888888877 33566779999999999999999999998764
No 29
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=9.3e-26 Score=156.10 Aligned_cols=152 Identities=64% Similarity=1.126 Sum_probs=122.6
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.+++...+.||.++....+.+++..+.+||+||+..++..|..++++++++++|+|+++..++.....++..+++....
T Consensus 39 l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~ 118 (190)
T cd00879 39 LKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEEL 118 (190)
T ss_pred HhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccc
Confidence 45566778899999998899999999999999999999999999999999999999999988898888888888765555
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++++||+|+......+++...++.......+.... .......+.+++|||++|.|++++|+||.+.+
T Consensus 119 ~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 119 ANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL-KVSGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc-cccCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 6799999999999987777888888776532211110000 01122457899999999999999999998764
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.94 E-value=4.5e-26 Score=155.66 Aligned_cols=136 Identities=18% Similarity=0.289 Sum_probs=108.9
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+..+++ ..+.||++.. ...+.+++ +.+++|||||+..++.++..+++++|++++|||++++.+|+.+..|+..+..
T Consensus 22 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~ 101 (172)
T cd04141 22 FISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITR 101 (172)
T ss_pred HHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHH
Confidence 445665 4688999875 34567766 7899999999999999999999999999999999999999999888776654
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.....+.|+++|+||+|+.+ .++.++....... .++++++|||++|.|++++|+||.+.+
T Consensus 102 ~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 102 VRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE-----------------FNCPFFETSAALRHYIDDAFHGLVREI 163 (172)
T ss_pred hcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH-----------------hCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence 33345799999999999865 3444444443332 356899999999999999999998653
No 31
>KOG0098|consensus
Probab=99.94 E-value=1.6e-26 Score=154.49 Aligned_cols=134 Identities=19% Similarity=0.254 Sum_probs=115.9
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
++++++ ..+..|+|+. .+.+++++ +++++|||+|+++|++....||++|.++++|||+++.++|..+..||.++.
T Consensus 26 f~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~r 105 (216)
T KOG0098|consen 26 FTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDAR 105 (216)
T ss_pred HhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHH
Confidence 455664 4667899986 67777766 899999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+. .++..++|++||+||.. .++.++-..+.+. ..+.+.++||+++.|++|+|...+..
T Consensus 106 q~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e-----------------hgLifmETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 106 QHS-NENMVIMLIGNKSDLEARREVSKEEGEAFARE-----------------HGLIFMETSAKTAENVEEAFINTAKE 166 (216)
T ss_pred Hhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHH-----------------cCceeehhhhhhhhhHHHHHHHHHHH
Confidence 664 46899999999999965 6788888777766 55678899999999999999887654
No 32
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=1.5e-25 Score=150.86 Aligned_cols=140 Identities=31% Similarity=0.551 Sum_probs=114.8
Q ss_pred CCCCCCCcccCCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
+.++++..+.||.|.....+..++ +.+.+||+||+..+...|..+++++|++++|+|++++.++.....|+..+++...
T Consensus 19 ~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~ 98 (160)
T cd04156 19 LKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEH 98 (160)
T ss_pred HhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh
Confidence 456666677899998877777654 8999999999999999999999999999999999999889999899988876655
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..+.|+++|+||+|+.......++...+.... .....++++++|||++|.|++++|++|.+
T Consensus 99 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 99 IKGVPVVLLANKQDLPGALTAEEITRRFKLKK-----------YCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred hcCCCEEEEEECcccccCcCHHHHHHHcCCcc-----------cCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 56899999999999976556666665544311 11224678999999999999999999875
No 33
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.94 E-value=6.5e-26 Score=156.13 Aligned_cols=132 Identities=17% Similarity=0.201 Sum_probs=106.0
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~ 76 (155)
+..+.+ ..+.||++.. ...+.+++ +++++|||+|++.|..+++.++++||++++|||++++.+|+.+ ..|+..+.
T Consensus 25 ~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~ 104 (182)
T cd04172 25 FAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 104 (182)
T ss_pred HHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 445554 5788999875 45566666 7899999999999999999999999999999999999999997 78998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCC
Q psy2161 77 ADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQ 141 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 141 (155)
... ++.|++||+||+|+.+. ++.++..+.... .+ +.|++|||++|.
T Consensus 105 ~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~-----------------~~~~~~~E~SAk~~~ 165 (182)
T cd04172 105 EFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQ-----------------IGAATYIECSALQSE 165 (182)
T ss_pred HHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHH-----------------cCCCEEEECCcCCCC
Confidence 543 57899999999998641 333444443332 34 489999999999
Q ss_pred C-hHHHHHHHHh
Q psy2161 142 G-FGNGFRWLAN 152 (155)
Q Consensus 142 ~-i~~~~~~l~~ 152 (155)
| ++++|+.+.+
T Consensus 166 n~v~~~F~~~~~ 177 (182)
T cd04172 166 NSVRDIFHVATL 177 (182)
T ss_pred CCHHHHHHHHHH
Confidence 8 9999998876
No 34
>KOG0091|consensus
Probab=99.94 E-value=2.6e-26 Score=150.64 Aligned_cols=136 Identities=15% Similarity=0.258 Sum_probs=111.5
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
++.|.+ +.-.||+|+. -+-++.. | +++++|||+||++|++..+.||+++-++++|||.++..+|+.+..|+.+.
T Consensus 28 ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea 107 (213)
T KOG0091|consen 28 FTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEA 107 (213)
T ss_pred HhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHH
Confidence 356664 4557999985 3344442 3 89999999999999999999999999999999999999999999999988
Q ss_pred HhCCC-CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 76 LADDA-LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 76 ~~~~~-~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.-+.. ...+-++||++|+||.. +++.++....... .++.++++||++|.|++|.|+.+.+
T Consensus 108 ~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~-----------------hgM~FVETSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 108 AMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAAS-----------------HGMAFVETSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred HHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHh-----------------cCceEEEecccCCCcHHHHHHHHHH
Confidence 75544 33456788999999976 6777776665544 6789999999999999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 171 eI 172 (213)
T KOG0091|consen 171 EI 172 (213)
T ss_pred HH
Confidence 54
No 35
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=1.8e-25 Score=151.54 Aligned_cols=138 Identities=25% Similarity=0.425 Sum_probs=113.1
Q ss_pred CCCCC-CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 2 LKNDR-TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 2 l~~~~-~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
+.++. ...+.||+|+....+..+++++.+||+||+..++.+|..++++||++++|+|++++.++...+.|+.++....
T Consensus 19 ~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~- 97 (164)
T cd04162 19 LSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP- 97 (164)
T ss_pred HhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC-
Confidence 44554 4578899999877777788999999999999999999999999999999999999999999999998886443
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc------CCChHHHHHHHHh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK------RQGFGNGFRWLAN 152 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~~~~l~~ 152 (155)
.++|+++|+||+|+.+.....++...++...+ ....++.+++|||++ ++|+.++|+.+..
T Consensus 98 -~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 98 -PDLPLVVLANKQDLPAARSVQEIHKELELEPI-----------ARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred -CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhh-----------cCCCceEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 57999999999999776666666665554211 233567888888888 9999999998864
No 36
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=3.9e-25 Score=149.81 Aligned_cols=137 Identities=34% Similarity=0.598 Sum_probs=115.8
Q ss_pred CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
...+.||++.+...+.+++.++++|||||++.+...+..+++++|++++|+|++++.++.....|+..+++.....+.|+
T Consensus 31 ~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 110 (167)
T cd04160 31 PSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL 110 (167)
T ss_pred ccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE
Confidence 35678999999989999999999999999999999999999999999999999998888888889988877655568999
Q ss_pred EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++++||+|+.......++...+.... .......++++++||++|.|++++++||+++
T Consensus 111 ilv~NK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 111 LILANKQDLPDALSVEEIKEVFQDKA----------EEIGRRDCLVLPVSALEGTGVREGIEWLVER 167 (167)
T ss_pred EEEEEccccccCCCHHHHHHHhcccc----------ccccCCceEEEEeeCCCCcCHHHHHHHHhcC
Confidence 99999999977666667766655421 1123346789999999999999999999864
No 37
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=3.6e-25 Score=152.61 Aligned_cols=142 Identities=29% Similarity=0.468 Sum_probs=112.1
Q ss_pred CCCCCCCcccCCCCCceeEEEE-----CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSM-----GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~-----~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+..+++..+.||.|.....+.+ .++++++|||||++++..+|..++++||++++|+|++++.+++.+..|+.++.
T Consensus 23 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~ 102 (183)
T cd04152 23 LKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKIT 102 (183)
T ss_pred HhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 4455666678999987655544 34899999999999999999999999999999999999888988888888887
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.....++|+++|+||+|+.+....+++...+.... ......+++++|||++|.|+++++++|.+.+
T Consensus 103 ~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 103 RFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHE-----------LSASTPWHVQPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred hhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccc-----------cCCCCceEEEEeecccCCCHHHHHHHHHHHH
Confidence 654445799999999999876556666665554311 0112346789999999999999999998754
No 38
>KOG0079|consensus
Probab=99.94 E-value=5.3e-26 Score=146.93 Aligned_cols=127 Identities=18% Similarity=0.313 Sum_probs=110.9
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
.+|..|+|+. +++++++| +++++|||+|+++|+.+...||++.+++++|||+++.++|...+.|++++.+. +..
T Consensus 35 ~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cds 112 (198)
T KOG0079|consen 35 GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDS 112 (198)
T ss_pred cceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhc--Ccc
Confidence 5889999985 88999987 89999999999999999999999999999999999999999999999999643 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+|-++|+||.|+.+ .+..++...+... .++.+|++|||+..|++..|.-|.++
T Consensus 113 v~~vLVGNK~d~~~RrvV~t~dAr~~A~~-----------------mgie~FETSaKe~~NvE~mF~cit~q 167 (198)
T KOG0079|consen 113 VPKVLVGNKNDDPERRVVDTEDARAFALQ-----------------MGIELFETSAKENENVEAMFHCITKQ 167 (198)
T ss_pred ccceecccCCCCccceeeehHHHHHHHHh-----------------cCchheehhhhhcccchHHHHHHHHH
Confidence 89999999999987 4455565555444 46789999999999999999887764
No 39
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.94 E-value=1.5e-25 Score=158.33 Aligned_cols=148 Identities=18% Similarity=0.166 Sum_probs=109.4
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|+.++++..+.||+|.......+..+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+... .
T Consensus 19 r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~ 97 (220)
T cd04126 19 RYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT-A 97 (220)
T ss_pred HHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh-c
Confidence 356677777899999876656666799999999999999999999999999999999999999999998888877653 2
Q ss_pred CCCCcEEEEEeCCCcCC---------------------cCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeec
Q psy2161 81 LTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVL 138 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~ 138 (155)
..+.|+++|+||+|+.+ .++.++........+. .......+ ....+.|++|||+
T Consensus 98 ~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~----~~~~~~~~~~~~~~~~~E~SA~ 173 (220)
T cd04126 98 NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK----YKMLDEDLSPAAEKMCFETSAK 173 (220)
T ss_pred CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc----cccccccccccccceEEEeeCC
Confidence 35689999999999854 2223333333222000 00000000 0123679999999
Q ss_pred cCCChHHHHHHHHhh
Q psy2161 139 KRQGFGNGFRWLANY 153 (155)
Q Consensus 139 ~~~~i~~~~~~l~~~ 153 (155)
+|.||+++|.++++.
T Consensus 174 tg~~V~elf~~i~~~ 188 (220)
T cd04126 174 TGYNVDELFEYLFNL 188 (220)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999999865
No 40
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=3e-25 Score=157.68 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=105.2
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~ 76 (155)
+.++.+ ..|.||++.. ...+.+++ +.+++|||+|++.|..++..|+++||++++|||++++.+|+.+ ..|+.++.
T Consensus 33 ~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~ 112 (232)
T cd04174 33 LAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIM 112 (232)
T ss_pred HhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 345554 4788999875 34566666 8999999999999999999999999999999999999999874 78998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--------------cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCC
Q psy2161 77 ADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQ 141 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 141 (155)
... ++.|++||+||+|+.+ .++.++..+.... .++ .|++|||++|.
T Consensus 113 ~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~-----------------~~~~~~~EtSAktg~ 173 (232)
T cd04174 113 DYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQ-----------------LGAEVYLECSAFTSE 173 (232)
T ss_pred HhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHH-----------------cCCCEEEEccCCcCC
Confidence 433 4689999999999863 2334444443333 344 68999999998
Q ss_pred -ChHHHHHHHHhh
Q psy2161 142 -GFGNGFRWLANY 153 (155)
Q Consensus 142 -~i~~~~~~l~~~ 153 (155)
|++++|+.++..
T Consensus 174 ~~V~e~F~~~~~~ 186 (232)
T cd04174 174 KSIHSIFRSASLL 186 (232)
T ss_pred cCHHHHHHHHHHH
Confidence 899999998754
No 41
>KOG0087|consensus
Probab=99.93 E-value=5.9e-26 Score=154.55 Aligned_cols=134 Identities=15% Similarity=0.255 Sum_probs=114.9
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+..+++ .+..+|+|+. .+++.+++ ++.++|||+||++|+.....||++|.++++|||++...+|+.+..|+.++.
T Consensus 34 ftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELR 113 (222)
T KOG0087|consen 34 FTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELR 113 (222)
T ss_pred hcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHH
Confidence 444554 4677999997 56677777 899999999999999999999999999999999999999999999999997
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+. .++++++||+||+||.. .++.++...+.+. .++.++++||+++.|++++|..+...
T Consensus 114 dha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~-----------------~~l~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 114 DHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK-----------------EGLFFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred hcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh-----------------cCceEEEecccccccHHHHHHHHHHH
Confidence 654 46899999999999976 6677777777766 34689999999999999999887654
No 42
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=4e-25 Score=149.87 Aligned_cols=135 Identities=19% Similarity=0.259 Sum_probs=108.0
Q ss_pred CCCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++++ ..+.||+|... ..+..++ +++.+|||||++.+...+..++++++++++|||++++.+|+.+..|+..+.
T Consensus 22 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~ 101 (166)
T cd04122 22 FTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR 101 (166)
T ss_pred HhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 445554 45667888753 4556665 789999999999999999999999999999999999999999999998875
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..+.|+++|+||+|+.+ .++.++....... .++.+++|||++|.|++++|.++++.+
T Consensus 102 ~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 102 NLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADE-----------------NGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 432 35689999999999965 3445555554433 346899999999999999999998653
No 43
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=3.8e-25 Score=154.56 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=110.0
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
+.++.+ ..+.||+|.. ...+.++ + +.+++|||||++.+..++..++++++++++|||++++.+|+.+..|+..+
T Consensus 20 l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i 99 (201)
T cd04107 20 YVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADL 99 (201)
T ss_pred HHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 445554 4678999865 4566665 3 88999999999999999999999999999999999999999999998877
Q ss_pred HhCC---CCCCCcEEEEEeCCCcC--CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 76 LADD---ALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 76 ~~~~---~~~~~piilv~nK~Dl~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
.... ...++|+++|+||+|+. .....+++.+..... ....+++|||++|.|++++|++|
T Consensus 100 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sak~~~~v~e~f~~l 163 (201)
T cd04107 100 DSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKEN----------------GFIGWFETSAKEGINIEEAMRFL 163 (201)
T ss_pred HHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHc----------------CCceEEEEeCCCCCCHHHHHHHH
Confidence 5422 23568999999999996 355666666655541 11579999999999999999999
Q ss_pred Hhhc
Q psy2161 151 ANYI 154 (155)
Q Consensus 151 ~~~i 154 (155)
.+.+
T Consensus 164 ~~~l 167 (201)
T cd04107 164 VKNI 167 (201)
T ss_pred HHHH
Confidence 8754
No 44
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=1.3e-24 Score=146.08 Aligned_cols=140 Identities=33% Similarity=0.600 Sum_probs=119.3
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
+.++....+.||.+.+...+.+++..+.+||+||++.+...|..+++++|++++|+|+++++++.....|+..+......
T Consensus 19 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
T cd00878 19 LKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEEL 98 (158)
T ss_pred HhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence 45566778899999998889999999999999999999999999999999999999999999999998899888765555
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+.|+++++||+|+.......++.+.++.. ......++++++||++|.|++++|++|..+
T Consensus 99 ~~~piiiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~~ 158 (158)
T cd00878 99 KGVPLLIFANKQDLPGALSVSELIEKLGLE------------KILGRRWHIQPCSAVTGDGLDEGLDWLLQQ 158 (158)
T ss_pred CCCcEEEEeeccCCccccCHHHHHHhhChh------------hccCCcEEEEEeeCCCCCCHHHHHHHHhhC
Confidence 689999999999997766666666665541 123356789999999999999999999753
No 45
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.93 E-value=3.4e-25 Score=149.83 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=108.3
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.+|.+ ..+.||++.. ...+..++ +.+++|||||++.+..++..+++++|++++|||++++.+|+....|+..+.+.
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~ 101 (164)
T cd04175 22 VQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV 101 (164)
T ss_pred HhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 44554 4577898865 44667765 78899999999999999999999999999999999999999999999988765
Q ss_pred CCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.|+++|+||+|+.+. ....+....... .++++++|||++|.|++++|+|+.+.+
T Consensus 102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 102 KDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ-----------------WGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred cCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH-----------------hCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 55568999999999999652 333333333222 236899999999999999999998765
No 46
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.93 E-value=3.9e-25 Score=151.41 Aligned_cols=143 Identities=17% Similarity=0.258 Sum_probs=105.0
Q ss_pred CCCCCC-CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+.++.+ ..+.||++... ..+.+++ +++++|||+|++.+..++..+++++|++++|||++++++|+.+. .|+..+.
T Consensus 21 ~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~ 100 (175)
T cd01874 21 YTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT 100 (175)
T ss_pred HHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 456675 68899998764 3667777 88999999999999999999999999999999999999999986 5887775
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccc---ccc-ccC-ccEEEEEeeeccCCChHHHHHHHH
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS---REI-LQM-RPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~-~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
... ++.|+++|+||+|+.+. .++.+.+.... ..... ... ... ..+.+++|||++|.|++++|+.++
T Consensus 101 ~~~--~~~piilvgnK~Dl~~~---~~~~~~l~~~~----~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 101 HHC--PKTPFLLVGTQIDLRDD---PSTIEKLAKNK----QKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred HhC--CCCCEEEEEECHhhhhC---hhhHHHhhhcc----CCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHH
Confidence 432 47899999999998542 11111111100 00000 000 111 236899999999999999999987
Q ss_pred hh
Q psy2161 152 NY 153 (155)
Q Consensus 152 ~~ 153 (155)
+.
T Consensus 172 ~~ 173 (175)
T cd01874 172 LA 173 (175)
T ss_pred HH
Confidence 64
No 47
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4.8e-25 Score=151.36 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=104.2
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~ 76 (155)
+.++.+ ..+.||++.. ...+.+++ +++++|||+|++.|..+++.++++||++++|||++++.+|+.+ ..|+..+.
T Consensus 21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~ 100 (178)
T cd04131 21 FAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQ 100 (178)
T ss_pred HHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHH
Confidence 345554 5788999875 44566666 8899999999999999999999999999999999999999996 78998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCC
Q psy2161 77 ADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQ 141 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 141 (155)
... ++.|+++|+||+|+.+. ++.++..+.... .+. .+++|||++|.
T Consensus 101 ~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~-----------------~~~~~~~E~SA~~~~ 161 (178)
T cd04131 101 EFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ-----------------LGAEIYLECSAFTSE 161 (178)
T ss_pred HHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH-----------------hCCCEEEECccCcCC
Confidence 543 57899999999998541 333333333322 343 79999999999
Q ss_pred C-hHHHHHHHHh
Q psy2161 142 G-FGNGFRWLAN 152 (155)
Q Consensus 142 ~-i~~~~~~l~~ 152 (155)
| ++++|..+.+
T Consensus 162 ~~v~~~F~~~~~ 173 (178)
T cd04131 162 KSVRDIFHVATM 173 (178)
T ss_pred cCHHHHHHHHHH
Confidence 5 9999998876
No 48
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.93 E-value=5.3e-25 Score=151.68 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=104.4
Q ss_pred CCCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..+.||+|... ..+.+++ +.+++|||+|++.+..++..++++||++++|||++++.+|+.+..|+..+.
T Consensus 20 ~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~ 99 (182)
T cd04128 20 YVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQAR 99 (182)
T ss_pred HHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 455665 45899999764 5677777 789999999999999999999999999999999999999999999999886
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
... ....| ++|+||+|+....... .+...... .....++.+++|||++|.|++++|+++.+.
T Consensus 100 ~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~-------------~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~ 164 (182)
T cd04128 100 GFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARK-------------YAKAMKAPLIFCSTSHSINVQKIFKIVLAK 164 (182)
T ss_pred HhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHH-------------HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 543 23466 6789999985322111 11111110 011234689999999999999999999865
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 165 l 165 (182)
T cd04128 165 A 165 (182)
T ss_pred H
Confidence 3
No 49
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.93 E-value=1.2e-24 Score=147.08 Aligned_cols=135 Identities=13% Similarity=0.260 Sum_probs=109.1
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++++ +.+.||+|.. ...+.+++ +++++||++|++.+...+..+++++|++++|||++++++|+.+..|+..+.
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~ 99 (161)
T cd04117 20 FTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVD 99 (161)
T ss_pred HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 456665 4578999975 45677776 789999999999999999999999999999999999999999999998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ...+.|+++|+||+|+.+ .+..++....... .+.++++|||++|.|++++|++|.+.+
T Consensus 100 ~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 161 (161)
T cd04117 100 EY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKE-----------------YGMDFFETSACTNSNIKESFTRLTELV 161 (161)
T ss_pred Hh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHhhC
Confidence 43 234689999999999865 3344444444332 235799999999999999999998753
No 50
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.93 E-value=7.4e-25 Score=147.75 Aligned_cols=135 Identities=17% Similarity=0.236 Sum_probs=106.8
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
..+.+ ..+.||.+.. ...+..++ +.+++|||||++++..++..++++++++++|||++++.+|+.+..|+..+.+.
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~ 101 (163)
T cd04136 22 VQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRV 101 (163)
T ss_pred HhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34443 4677888753 55666766 78899999999999999999999999999999999999999999999888765
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.|+++|+||+|+.+ .....+....... .+.+++++||++|.|+.++|+++.+.+
T Consensus 102 ~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 102 KDTENVPMVLVGNKCDLEDERVVSREEGQALARQ-----------------WGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred cCCCCCCEEEEEECccccccceecHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 5556789999999999864 2233333222222 235899999999999999999998764
No 51
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=1.2e-24 Score=149.15 Aligned_cols=129 Identities=17% Similarity=0.247 Sum_probs=105.2
Q ss_pred CcccCCCCCce--eEEEEC------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161 8 AQHMPTLHPTS--EELSMG------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD 73 (155)
Q Consensus 8 ~~~~pT~~~~~--~~~~~~------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~ 73 (155)
..+.||++... ..+.++ .+.+.+|||||++.+...+..+++++|++++|||++++++|..+..|+.
T Consensus 31 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~ 110 (180)
T cd04127 31 PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMS 110 (180)
T ss_pred ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 46789998753 334432 2889999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.+.......+.|+++|+||+|+.+ .++.++....... .+++++++||++|.|++++|++|.
T Consensus 111 ~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~~~~v~~l~~~l~ 173 (180)
T cd04127 111 QLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK-----------------YGIPYFETSAATGTNVEKAVERLL 173 (180)
T ss_pred HHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence 887554445789999999999865 3455555544443 245799999999999999999998
Q ss_pred hh
Q psy2161 152 NY 153 (155)
Q Consensus 152 ~~ 153 (155)
+.
T Consensus 174 ~~ 175 (180)
T cd04127 174 DL 175 (180)
T ss_pred HH
Confidence 64
No 52
>PTZ00369 Ras-like protein; Provisional
Probab=99.93 E-value=9.3e-25 Score=151.22 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=108.4
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+.++.+ ..+.||.+.. ...+.+++ +.+++|||||++.+..++..++++++++++|||++++.+|+.+..|+..+.+
T Consensus 25 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~ 104 (189)
T PTZ00369 25 FIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILR 104 (189)
T ss_pred HhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 344554 5778999875 45556665 7899999999999999999999999999999999999999999999988876
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.....+.|+++|+||+|+.+ .+...+....... .+++++++||++|.|++++|++|.+.+
T Consensus 105 ~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~~~e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 105 VKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS-----------------FGIPFLETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred hcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------hCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 54445789999999999854 2343333333322 235799999999999999999998754
No 53
>KOG0394|consensus
Probab=99.93 E-value=5e-25 Score=147.08 Aligned_cols=130 Identities=20% Similarity=0.313 Sum_probs=112.3
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC--
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL-- 81 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~-- 81 (155)
..+..|+|.. .+.+.+++ +.++||||+||++|+++.-.+|++||.+++|||++++.+|+.+..|-++.+.....
T Consensus 36 ~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~ 115 (210)
T KOG0394|consen 36 QQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQD 115 (210)
T ss_pred HHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCC
Confidence 4677899985 77788877 89999999999999999999999999999999999999999999999999865432
Q ss_pred -CCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 82 -TDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 82 -~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...|++++|||+|+.+ .++.......+... .+++|+++|||.+.|++++|..+.+.
T Consensus 116 Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~----------------gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 116 PETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSK----------------GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred CCcccEEEEcccccCCCCccceeeHHHHHHHHHhc----------------CCceeEEecccccccHHHHHHHHHHH
Confidence 3479999999999865 46677777777653 57899999999999999999987753
No 54
>KOG0080|consensus
Probab=99.93 E-value=1.9e-25 Score=146.19 Aligned_cols=135 Identities=19% Similarity=0.276 Sum_probs=115.1
Q ss_pred CCCCCCcccCC-CCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRTAQHMPT-LHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~~~~~pT-~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
..+.+.+..|| +|+. ++.+.++| +++.+|||+||++|+.+.+.||++|.++|+|||++..++|..+..|+.++-.
T Consensus 32 v~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~ 111 (209)
T KOG0080|consen 32 VSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDL 111 (209)
T ss_pred HhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHh
Confidence 34556666665 8875 77777776 8999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....++.-.++|+||+|... .++.++-..+... .++-+++|||++.+|++..|+.|+..|
T Consensus 112 Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~-----------------h~~LFiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 112 YSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK-----------------HRCLFIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred hcCCccHhHhhhcccccchhcccccHHHHHHHHHh-----------------hCcEEEEcchhhhccHHHHHHHHHHHH
Confidence 77667888999999999763 5677776666655 678899999999999999999888653
No 55
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.93 E-value=1.8e-24 Score=148.07 Aligned_cols=148 Identities=14% Similarity=0.265 Sum_probs=103.1
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+..+.+ ..+.||++.. ...+..++ +++++|||||+..+..++..+++++|++|+|||++++++|..+. .|+..+.
T Consensus 21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~ 100 (174)
T cd01871 21 YTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 100 (174)
T ss_pred HhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 345554 6788999764 34556665 78999999999999999999999999999999999999999985 6877775
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|+++|+||+|+.+. ...+.+...... .++..++....... ..+.+++|||++|.|++++|+.+++.+
T Consensus 101 ~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~l~~~~ 174 (174)
T cd01871 101 HH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-PITYPQGLAMAKEI--GAVKYLECSALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred Hh--CCCCCEEEEeeChhhccChhhHHHHhhccCC-CCCHHHHHHHHHHc--CCcEEEEecccccCCHHHHHHHHHHhC
Confidence 43 247999999999998542 111111111000 00000000000001 125899999999999999999998753
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.5e-24 Score=150.33 Aligned_cols=136 Identities=17% Similarity=0.224 Sum_probs=106.1
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
|.++.+ ..+.||.+.. ...+.+++ +.+++|||||++++...+..+++++|++++|||++++.+|+.+..|+..+..
T Consensus 19 l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~ 98 (190)
T cd04144 19 LCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQR 98 (190)
T ss_pred HHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 445555 4578898865 44556666 6799999999999999999999999999999999999999999999888764
Q ss_pred CCC--CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 78 DDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 78 ~~~--~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
... ..+.|+++|+||+|+.+ .+...+....... .++.++++||++|.|++++|+++.+.
T Consensus 99 ~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SAk~~~~v~~l~~~l~~~ 161 (190)
T cd04144 99 VKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARR-----------------LGCEFIEASAKTNVNVERAFYTLVRA 161 (190)
T ss_pred HhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHH-----------------hCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 332 25789999999999864 3333333332222 24579999999999999999999875
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 162 l 162 (190)
T cd04144 162 L 162 (190)
T ss_pred H
Confidence 3
No 57
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.7e-24 Score=153.19 Aligned_cols=132 Identities=17% Similarity=0.276 Sum_probs=105.6
Q ss_pred CCCCC-CcccCCCCCceeE--EEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~~~~--~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
..+.+ ..+.||+|..... +..++ +++.+|||+|++.+..++..|+++++++|+|||++++.+|..+..|+..+..
T Consensus 34 ~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~ 113 (219)
T PLN03071 34 LTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR 113 (219)
T ss_pred hhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 44554 5688999986444 44443 8999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. ..+.|+++|+||+|+.+ .+..+++ ..... ..+.+++|||++|.|++++|+||++.+
T Consensus 114 ~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-----------------~~~~~~e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 114 V--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-----------------KNLQYYEISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred h--CCCCcEEEEEEchhhhhccCCHHHH-HHHHh-----------------cCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 4 35799999999999865 2333333 22221 356899999999999999999998754
No 58
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.92 E-value=2.8e-24 Score=145.68 Aligned_cols=135 Identities=16% Similarity=0.264 Sum_probs=107.0
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++++ ..+.||.|.. ...+..++ +++++|||||++.+...+..+++++|++++|+|++++++++.+..|+..+.
T Consensus 21 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~ 100 (165)
T cd01865 21 YADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIK 100 (165)
T ss_pred HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 445665 4678999864 34555554 789999999999999999999999999999999999999999999998885
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..++|+++|+||+|+.+. ...++..+.... .+++++++||++|.|++++|+++.+.+
T Consensus 101 ~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 101 TYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ-----------------LGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred HhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 432 346899999999998652 333444333332 245799999999999999999998765
No 59
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.92 E-value=1.7e-24 Score=146.18 Aligned_cols=136 Identities=17% Similarity=0.223 Sum_probs=106.2
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
..|++ ..+.||.+.. ...+..++ +.+++|||||++++..++..+++++|++++|+|++++.+|..+..|+..+...
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~ 101 (163)
T cd04176 22 VSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV 101 (163)
T ss_pred HcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34554 4567887643 55666666 67899999999999999999999999999999999999999999998888765
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
....++|+++|+||+|+.. .....+....... .++++++|||++|.|+.++|.++++.++
T Consensus 102 ~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd04176 102 KGYEKVPIILVGNKVDLESEREVSSAEGRALAEE-----------------WGCPFMETSAKSKTMVNELFAEIVRQMN 163 (163)
T ss_pred cCCCCCCEEEEEECccchhcCccCHHHHHHHHHH-----------------hCCEEEEecCCCCCCHHHHHHHHHHhcC
Confidence 4446799999999999854 2222232222221 2357899999999999999999998764
No 60
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=3.3e-24 Score=146.22 Aligned_cols=136 Identities=17% Similarity=0.253 Sum_probs=106.5
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..|.||++.. ...+.+++ +++++|||||++++..++..+++++|++++|||++++.++.....|+..++
T Consensus 20 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~ 99 (170)
T cd04108 20 FCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDAL 99 (170)
T ss_pred HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 345554 4788999876 35666666 789999999999999999999999999999999999999999999999887
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 77 ADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+.......|+++|+||+|+.+... ..+....... .+..++++||++|.|++++|+.+.+
T Consensus 100 ~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~g~~v~~lf~~l~~ 162 (170)
T cd04108 100 KENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE-----------------MQAEYWSVSALSGENVREFFFRVAA 162 (170)
T ss_pred HhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 654444678999999999864211 2222222211 2357899999999999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 163 ~~ 164 (170)
T cd04108 163 LT 164 (170)
T ss_pred HH
Confidence 53
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.92 E-value=2.6e-24 Score=146.12 Aligned_cols=133 Identities=20% Similarity=0.329 Sum_probs=105.1
Q ss_pred CCCC-CCcccCCCCCceeEEEE--CC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDR-TAQHMPTLHPTSEELSM--GD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~-~~~~~pT~~~~~~~~~~--~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++. ...+.||.+.....+.+ ++ +.+.+|||+|++.+..++..+++++|++|+|||++++.++..+..|+..+.+
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (166)
T cd00877 21 LTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVR 100 (166)
T ss_pred HhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444 34688999987554443 33 8999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .++|+++|+||+|+.+.....+..+... ...+.++++||++|.|++++|++|.+.+
T Consensus 101 ~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 101 VC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----------------KKNLQYYEISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred hC--CCCcEEEEEEchhcccccCCHHHHHHHH-----------------HcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence 43 3799999999999975322222222222 2456899999999999999999998754
No 62
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=4.8e-24 Score=143.38 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=108.1
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+.++.+ ..+.||.+.. ...+.+++ +.+++|||||++.++.++..|+++++++++|+|+++..+++.+..|+..+.+
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~ 100 (162)
T cd04138 21 LIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKR 100 (162)
T ss_pred HHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 344553 5677888864 44556666 6789999999999999999999999999999999999999998889888876
Q ss_pred CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.....+.|+++|+||+|+.+ .....+....... .++.++++||++|.|++++|+++.+.+
T Consensus 101 ~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 101 VKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKS-----------------YGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred hcCCCCCCEEEEEECcccccceecHHHHHHHHHH-----------------hCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 55456789999999999865 3333444443332 245799999999999999999999875
No 63
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.92 E-value=4.4e-24 Score=150.68 Aligned_cols=136 Identities=15% Similarity=0.227 Sum_probs=107.1
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
|.++.+ ..+.||+|.. ...+.+++ +++++|||||++.+..++..++++||++++|||++++++|+.+..|+..+
T Consensus 20 l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l 99 (215)
T cd04109 20 FAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMV 99 (215)
T ss_pred HhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 344444 5788999875 45566643 89999999999999999999999999999999999999999999998888
Q ss_pred HhCCC--CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 76 LADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 76 ~~~~~--~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.+... ..+.|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++|++++
T Consensus 100 ~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~-----------------~~~~~~~iSAktg~gv~~lf~~l~ 162 (215)
T cd04109 100 RKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQA-----------------NGMESCLVSAKTGDRVNLLFQQLA 162 (215)
T ss_pred HHhccccCCCceEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 65432 23568999999999964 3444444443332 235789999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 163 ~~l 165 (215)
T cd04109 163 AEL 165 (215)
T ss_pred HHH
Confidence 754
No 64
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=5.8e-24 Score=143.75 Aligned_cols=136 Identities=22% Similarity=0.384 Sum_probs=108.5
Q ss_pred CCCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.+++ ...+.||++.. ...+..++ +.+++|||||++.+..++..+++++|++|+|+|++++.+++.+..|+..+.
T Consensus 20 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~ 99 (168)
T cd04119 20 YCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMK 99 (168)
T ss_pred HHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 34454 45788999875 44566655 899999999999999999999999999999999999999999999999887
Q ss_pred hCCC----CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 77 ADDA----LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 77 ~~~~----~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
+... ..+.|+++|+||+|+.+ .....+....... .++.++++||++|.|+++++++|
T Consensus 100 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l 162 (168)
T cd04119 100 QEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAES-----------------KGFKYFETSACTGEGVNEMFQTL 162 (168)
T ss_pred HhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHH
Confidence 5433 25689999999999863 3344444443332 23579999999999999999999
Q ss_pred Hhhc
Q psy2161 151 ANYI 154 (155)
Q Consensus 151 ~~~i 154 (155)
.+.+
T Consensus 163 ~~~l 166 (168)
T cd04119 163 FSSI 166 (168)
T ss_pred HHHH
Confidence 8754
No 65
>KOG0086|consensus
Probab=99.92 E-value=2.6e-24 Score=139.94 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=107.0
Q ss_pred cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
+..-|+|+. .+.+.+++ +++++|||+||++|++..+.||++|.+.++|||+++.++|+.+..|+.+.. ....+++
T Consensus 37 dssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR-~lAs~nI 115 (214)
T KOG0086|consen 37 DSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR-TLASPNI 115 (214)
T ss_pred cccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH-hhCCCcE
Confidence 344578875 67778876 899999999999999999999999999999999999999999999999884 3455678
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
-+++++||.||.. .++..+...+.+. ..+.++++||++|+|++|.|-.+.+.
T Consensus 116 vviL~GnKkDL~~~R~VtflEAs~FaqE-----------------nel~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 116 VVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred EEEEeCChhhcChhhhhhHHHHHhhhcc-----------------cceeeeeecccccccHHHHHHHHHHH
Confidence 8999999999976 4566666666555 45688999999999999999877653
No 66
>KOG0093|consensus
Probab=99.92 E-value=1.1e-24 Score=140.68 Aligned_cols=128 Identities=16% Similarity=0.266 Sum_probs=105.6
Q ss_pred cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
.+..|.|+. .+++-.+. +++++|||+|+++|+.....||++|+++|+|||+++.++|..+..|...+. ..+..+.
T Consensus 49 afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIk-tysw~na 127 (193)
T KOG0093|consen 49 AFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIK-TYSWDNA 127 (193)
T ss_pred ceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHhe-eeeccCc
Confidence 567788875 44444333 899999999999999999999999999999999999999999999999884 4466789
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||||+.+ .++-+......+. .++.++++|||.+.|+..+|+.+...|
T Consensus 128 qvilvgnKCDmd~eRvis~e~g~~l~~~-----------------LGfefFEtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 128 QVILVGNKCDMDSERVISHERGRQLADQ-----------------LGFEFFETSAKENINVKQVFERLVDII 182 (193)
T ss_pred eEEEEecccCCccceeeeHHHHHHHHHH-----------------hChHHhhhcccccccHHHHHHHHHHHH
Confidence 9999999999976 3444544444433 345899999999999999999987654
No 67
>KOG0074|consensus
Probab=99.92 E-value=6.7e-25 Score=140.80 Aligned_cols=141 Identities=30% Similarity=0.571 Sum_probs=126.7
Q ss_pred CCCCCCCcccCCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|+.++.....||.|++...+.+++ +++++||.+|++..+++|..||.+.|++|||+|+++...|++....+-+++....
T Consensus 37 L~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK 116 (185)
T KOG0074|consen 37 LKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK 116 (185)
T ss_pred HccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh
Confidence 566678888999999999999988 9999999999999999999999999999999999999999998888888887777
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+|+++..||.|+..+.+.+++...+...+ +..+.|++.+|||.+++|+....+|++...
T Consensus 117 l~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 117 LAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCccccccCccCcchhhhcCC
Confidence 78899999999999988888888888887733 566789999999999999999999987643
No 68
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=2.2e-23 Score=142.07 Aligned_cols=140 Identities=28% Similarity=0.554 Sum_probs=115.5
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.+.....+.||.|.+...+.+++..+.+||+||+..+...|..+++++|++++|+|+++..++.....++..+++....
T Consensus 34 l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~ 113 (173)
T cd04155 34 LASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKL 113 (173)
T ss_pred HhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhh
Confidence 34445666889999998899999999999999999999999999999999999999999988888888888777765444
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.++|+++++||+|+.+.....++.+.++.. ......+.+++|||++|.|++++|+||+++
T Consensus 114 ~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~------------~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 114 AGVPVLVFANKQDLATAAPAEEIAEALNLH------------DLRDRTWHIQACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred cCCCEEEEEECCCCccCCCHHHHHHHcCCc------------ccCCCeEEEEEeECCCCCCHHHHHHHHhcC
Confidence 579999999999987655566666665542 233445678999999999999999999863
No 69
>KOG0095|consensus
Probab=99.92 E-value=1.3e-24 Score=140.76 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=110.6
Q ss_pred CCCCCCCC-cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 1 MLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 1 ~l~~~~~~-~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
|+++|-++ -.-.|+|+. +++++++| +++++|||+||++|++....||+.|+++|+|||++...+|+.+..|+.++
T Consensus 26 rftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlrei 105 (213)
T KOG0095|consen 26 RFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREI 105 (213)
T ss_pred hhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHH
Confidence 45566654 445788875 88999987 89999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 76 LADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+.. ...+-.++|+||+|+.+. ..++++.+.+... ..+.++++||++..|++.+|..++-.
T Consensus 106 e~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~----------------qdmyfletsakea~nve~lf~~~a~r 167 (213)
T KOG0095|consen 106 EQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEA----------------QDMYFLETSAKEADNVEKLFLDLACR 167 (213)
T ss_pred HHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHh----------------hhhhhhhhcccchhhHHHHHHHHHHH
Confidence 7554 345678899999998762 4445555544431 34678999999999999999887643
No 70
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.92 E-value=1.4e-23 Score=142.41 Aligned_cols=135 Identities=19% Similarity=0.277 Sum_probs=108.8
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..+.||.+.. ...+.+++ +.+++|||||++.+...+..++++||++++|+|++++.+|+.+..|+..+.
T Consensus 23 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~ 102 (167)
T cd01867 23 FSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIE 102 (167)
T ss_pred HhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 344553 4678999875 45666766 789999999999999999999999999999999999999999999999886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..+.|+++|+||+|+.+ ....++....... .+++++++||++|.|++++|+++.+.+
T Consensus 103 ~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 103 EHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE-----------------YGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred HhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 532 35789999999999975 3344444444433 345799999999999999999998764
No 71
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.92 E-value=2.5e-24 Score=149.05 Aligned_cols=148 Identities=14% Similarity=0.218 Sum_probs=104.9
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+.++.+ ..+.||++.. ...+..++ +.+++|||+|++.+..++..++++++++++|||++++.+|+.+. .|+..+.
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~ 99 (189)
T cd04134 20 FTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIR 99 (189)
T ss_pred HhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 445665 4578999876 34455555 78999999999999999999999999999999999999998885 6888886
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|+++|+||+|+.+.....+..............+. ..... ..+.+++|||++|.|++++|+++++.+
T Consensus 100 ~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 100 EH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGL---AVAKRINALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred Hh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHH---HHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 43 247899999999999753322222111111000000000 00111 236899999999999999999998753
No 72
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.91 E-value=1.3e-23 Score=148.48 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=100.8
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+..+++ ..|.||++.+ ...+.+++ +.+.+|||+|++.|..+++.+|+++|++++|||++++++|+.+. .|...+.
T Consensus 21 ~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~ 100 (222)
T cd04173 21 FAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQ 100 (222)
T ss_pred HHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 345554 4789999876 34667766 88999999999999999999999999999999999999999984 5665553
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc--ccCccCCCcccccccccCcc-EEEEEeeeccCCC-hHHHHHHHHh
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFG--LYGLTTGKEFTSREILQMRP-IELFMCSVLKRQG-FGNGFRWLAN 152 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~-i~~~~~~l~~ 152 (155)
. ..++.|++||+||+|+.+... .+....+ ..+++..++... ....+ ..|++|||+++.| +.++|+.+..
T Consensus 101 ~--~~~~~piiLVgnK~DL~~~~~--~~~~~~~~~~~pIs~e~g~~~---ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~ 173 (222)
T cd04173 101 E--FCPNAKVVLVGCKLDMRTDLA--TLRELSKQRLIPVTHEQGTVL---AKQVGAVSYVECSSRSSERSVRDVFHVATV 173 (222)
T ss_pred h--hCCCCCEEEEEECcccccchh--hhhhhhhccCCccCHHHHHHH---HHHcCCCEEEEcCCCcCCcCHHHHHHHHHH
Confidence 2 235799999999999965211 1110000 000000000000 11123 4899999999985 9999998765
No 73
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=1.7e-23 Score=146.03 Aligned_cols=134 Identities=16% Similarity=0.286 Sum_probs=107.6
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++++ ..+.||+|.. ...+.+++ +.+.+||+||++.+...+..++++++++++|||++++++|+.+..|+..+.
T Consensus 26 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~ 105 (199)
T cd04110 26 FADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIE 105 (199)
T ss_pred HhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 344554 4688999865 45666666 689999999999999999999999999999999999999999999999886
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ...|+++|+||+|+.+. ....+....... .++.++++||++|.|++++|++|.+.+
T Consensus 106 ~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 106 QNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ-----------------MGISLFETSAKENINVEEMFNCITELV 166 (199)
T ss_pred HhC--CCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 432 46899999999998652 344444444333 246899999999999999999998653
No 74
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.8e-23 Score=145.00 Aligned_cols=135 Identities=17% Similarity=0.262 Sum_probs=107.2
Q ss_pred CCCCCC--CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT--AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~--~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
+.++++ ..+.||.+... ..+.+++ +++++|||||++++...+..+++++|++++|+|++++++++.+..|+..+
T Consensus 20 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i 99 (191)
T cd04112 20 FKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEI 99 (191)
T ss_pred HhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 445554 36788998763 3466666 79999999999999999999999999999999999999999999999888
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
... ...+.|+++|+||+|+.. .....+....... .+++++++||++|.|++++|+++.+.
T Consensus 100 ~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~-----------------~~~~~~e~Sa~~~~~v~~l~~~l~~~ 161 (191)
T cd04112 100 KEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKE-----------------YGVPFMETSAKTGLNVELAFTAVAKE 161 (191)
T ss_pred HHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 653 334789999999999853 3344444443332 23579999999999999999999875
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 162 ~ 162 (191)
T cd04112 162 L 162 (191)
T ss_pred H
Confidence 4
No 75
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=5.7e-23 Score=137.31 Aligned_cols=139 Identities=29% Similarity=0.543 Sum_probs=113.0
Q ss_pred CCCCC-CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 2 LKNDR-TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 2 l~~~~-~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
|.+++ ...+.||.+.+...+..+++.+.+||+||+..++..|..+++++|++++|+|++++.++.....++..+.....
T Consensus 19 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 98 (159)
T cd04159 19 IAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPS 98 (159)
T ss_pred HccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh
Confidence 34444 45788999999888888889999999999999999999999999999999999998888888888888776555
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..++|+++|+||+|+.+.....++...+... ......+.++++||++|.|++++++++.+
T Consensus 99 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 99 LEGIPLLVLGNKNDLPGALSVDELIEQMNLK------------SITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred hcCCCEEEEEeCccccCCcCHHHHHHHhCcc------------cccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 5688999999999987654444454444331 12334578999999999999999999975
No 76
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.91 E-value=2.2e-23 Score=141.25 Aligned_cols=135 Identities=20% Similarity=0.295 Sum_probs=107.6
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ ..+.||.+.. ...+..++ +++++||+||++.+...+..+++++|++++|||++++++|..+..|+..+.
T Consensus 22 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~ 101 (166)
T cd01869 22 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEID 101 (166)
T ss_pred HhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 344544 4667888864 45666666 689999999999999999999999999999999999999999999998885
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..+.|+++|+||+|+.. .+..++....... .+++++++||++|.|++++|+++.+.+
T Consensus 102 ~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 102 RYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE-----------------LGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 432 35689999999999865 3444444444433 346899999999999999999998754
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.91 E-value=1.9e-23 Score=150.01 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=110.0
Q ss_pred CCCCCCC-cccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~~-~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+.++++. .+.||++.. ...+.+++ +.+++|||+|++.|..++..++.++|++|+|||++++.+|+.+..|+.++..
T Consensus 20 ~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~ 99 (247)
T cd04143 20 FLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILE 99 (247)
T ss_pred HHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 4556654 678999753 55667776 7899999999999999999999999999999999999999999999888864
Q ss_pred CC--------CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161 78 DD--------ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 78 ~~--------~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
.. ...++|+++|+||+|+.. .+..+++.+.+... ..+.++++||++|.|++++|
T Consensus 100 ~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~----------------~~~~~~evSAktg~gI~elf 163 (247)
T cd04143 100 TKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGD----------------ENCAYFEVSAKKNSNLDEMF 163 (247)
T ss_pred hhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhc----------------CCCEEEEEeCCCCCCHHHHH
Confidence 32 234789999999999864 45566666655431 24689999999999999999
Q ss_pred HHHHhh
Q psy2161 148 RWLANY 153 (155)
Q Consensus 148 ~~l~~~ 153 (155)
++|.+.
T Consensus 164 ~~L~~~ 169 (247)
T cd04143 164 RALFSL 169 (247)
T ss_pred HHHHHH
Confidence 999874
No 78
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=1.7e-23 Score=147.31 Aligned_cols=135 Identities=16% Similarity=0.242 Sum_probs=107.4
Q ss_pred CCCCC-CcccCCCCCc--eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
.++.+ ..+.||+|.. ...+.+. + +++++|||||++.+..++..+++++|++++|||++++++|+.+..|+..+.
T Consensus 23 ~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~ 102 (211)
T cd04111 23 TEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR 102 (211)
T ss_pred HcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 34454 3467898875 4455553 3 789999999999999999999999999999999999999999999999987
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
........|+++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|++|++.+
T Consensus 103 ~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 103 SHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD-----------------LGMKYIETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred HhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------hCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 654445678999999999865 3444454444332 346899999999999999999998753
No 79
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=3e-23 Score=141.08 Aligned_cols=137 Identities=15% Similarity=0.244 Sum_probs=108.6
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+ +.+.||+|.. ...+.+++ +++++||+||++++..++..+++++|++++|||++++.+++.+..|...++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 104 (170)
T cd04116 25 YVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFI 104 (170)
T ss_pred HHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 344554 3567888875 45566665 789999999999999999999999999999999999999999999988776
Q ss_pred hCCC---CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 77 ADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 77 ~~~~---~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.... ..+.|+++|+||+|+.. .....++.+..... ....++++||++|.|+.++|+++.+
T Consensus 105 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 105 YYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCREN----------------GDYPYFETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHC----------------CCCeEEEEECCCCCCHHHHHHHHHh
Confidence 5332 24689999999999864 44556665554431 1247899999999999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 169 ~~ 170 (170)
T cd04116 169 RV 170 (170)
T ss_pred hC
Confidence 64
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.91 E-value=1.3e-23 Score=141.61 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=99.8
Q ss_pred CCCCCCc-ccCCCCCceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 3 KNDRTAQ-HMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 3 ~~~~~~~-~~pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
..+.+.. +.||.+.....+.+++ +.+.+|||+|++. ..+++++|++++|||++++.+|+.+..|+.++....
T Consensus 21 ~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~ 95 (158)
T cd04103 21 LTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR 95 (158)
T ss_pred HhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 3455433 4566555567788888 7899999999974 346789999999999999999999999999997665
Q ss_pred CCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+.|+++|+||.|+.. .++..+..+.... ..++.+++|||++|.||+++|+++++.+
T Consensus 96 ~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 96 NISEIPLILVGTQDAISESNPRVIDDARARQLCAD----------------MKRCSYYETCATYGLNVERVFQEAAQKI 158 (158)
T ss_pred CCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH----------------hCCCcEEEEecCCCCCHHHHHHHHHhhC
Confidence 556789999999999842 2333333332221 1247899999999999999999998754
No 81
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=2.4e-23 Score=143.93 Aligned_cols=135 Identities=17% Similarity=0.292 Sum_probs=107.2
Q ss_pred CCCCCCC-cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~~-~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+.++.+. .+.||.|.. ...+.+++ +.+++|||+|++.+...+..+++++|++++|||++++.+|..+..|+..+.
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~ 99 (188)
T cd04125 20 FTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEIN 99 (188)
T ss_pred HhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 4566665 488999864 45666665 789999999999999999999999999999999999999999999998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ....|+++++||+|+.+ .+...+....... .++.++++||++|.|++++|++|.+.+
T Consensus 100 ~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~evSa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 100 RYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDS-----------------LNIPFFETSAKQSINVEEAFILLVKLI 161 (188)
T ss_pred HhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 432 24589999999999874 2333443333322 245799999999999999999998753
No 82
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.91 E-value=2.6e-23 Score=140.34 Aligned_cols=131 Identities=18% Similarity=0.297 Sum_probs=105.0
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+.+++ +++++|||||+..+..++..+++++|++++|+|++++.+++.+..|+..+.+.....+
T Consensus 28 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 107 (164)
T cd04145 28 VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDE 107 (164)
T ss_pred CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 34667888754 44555666 6899999999999999999999999999999999999999999999988876544457
Q ss_pred CcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++++||+|+... ....+....... .++.++++||++|.|++++|+++.+.+
T Consensus 108 ~piiiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 108 FPMILVGNKADLEHQRKVSREEGQELARK-----------------LKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCEEEEeeCccccccceecHHHHHHHHHH-----------------cCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 899999999998652 233344333332 235789999999999999999998765
No 83
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.91 E-value=4.9e-23 Score=139.31 Aligned_cols=134 Identities=17% Similarity=0.286 Sum_probs=107.4
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++.+ ..+.||.+.. ...+..++ +.+++||+||+..+..++..++++++++++|+|++++.++..+..|+..+..
T Consensus 24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (165)
T cd01868 24 TRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRD 103 (165)
T ss_pred hcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34443 4678999875 45566666 6899999999999999999999999999999999999999999999988865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..++|+++|+||+|+.+ ....++....... .++.+++|||++|.|++++++++...+
T Consensus 104 ~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 HA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK-----------------NGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred hC-CCCCeEEEEEECccccccccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 43 34689999999999865 3344444444332 346899999999999999999998765
No 84
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=6.3e-23 Score=138.90 Aligned_cols=135 Identities=16% Similarity=0.246 Sum_probs=106.6
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
..+.+ ..+.||.+.. ...+.+++ +++++|||||++.+...+..+++++|++++|||++++.+++.+..|+..+..
T Consensus 24 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~ 103 (165)
T cd01864 24 KSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEK 103 (165)
T ss_pred hhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 34443 4567888754 56677777 6899999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|+++|+||+|+.+ .....+........ ....++++||++|.|++++|+++.+.+
T Consensus 104 ~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 104 YG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----------------GMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred hC-CCCCcEEEEEECcccccccccCHHHHHHHHHHc----------------CCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence 32 35789999999999865 23334444433321 124689999999999999999998764
No 85
>KOG0083|consensus
Probab=99.91 E-value=1.7e-24 Score=137.87 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=109.8
Q ss_pred CCCCCCC--CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161 1 MLKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS 74 (155)
Q Consensus 1 ~l~~~~~--~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~ 74 (155)
|.|+|.+ ...++|+|+. .+-++.++ +++++|||+||++|++....||++||+++++||+++..+|+....|+.+
T Consensus 16 r~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlse 95 (192)
T KOG0083|consen 16 RFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSE 95 (192)
T ss_pred EeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHH
Confidence 4567764 4677899986 44455555 8999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+... ....+.+.+++||+|+.. .+..++-....+. ..+++.++|||+|-|++..|-.+++
T Consensus 96 i~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~-----------------y~ipfmetsaktg~nvd~af~~ia~ 157 (192)
T KOG0083|consen 96 IHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEA-----------------YGIPFMETSAKTGFNVDLAFLAIAE 157 (192)
T ss_pred HHHH-HHhhHhHhhhccccccchhhccccchHHHHHHH-----------------HCCCceeccccccccHhHHHHHHHH
Confidence 9643 345688999999999843 4444444444443 3458999999999999999998887
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 158 ~l 159 (192)
T KOG0083|consen 158 EL 159 (192)
T ss_pred HH
Confidence 54
No 86
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.91 E-value=3.8e-23 Score=139.68 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=105.7
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.++.+ ..+.||.+.. ...+..++ +.+++|||||++++..++..++++++++++|+|++++++++.+..|...+.+.
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 100 (164)
T smart00173 21 VQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV 100 (164)
T ss_pred HhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 33443 4566777654 44555555 78999999999999999999999999999999999999999998888887765
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.|+++|+||+|+.. .....++...... .+..+++|||++|.|++++|++|.+.+
T Consensus 101 ~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 101 KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ-----------------WGCPFLETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCCEEEEEECccccccceEcHHHHHHHHHH-----------------cCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 5455789999999999865 2333344333332 235899999999999999999998764
No 87
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=5.5e-23 Score=145.18 Aligned_cols=135 Identities=16% Similarity=0.253 Sum_probs=108.1
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++.+ ..+.||+|.. ...+.+++ +.+++|||+|++++..++..++++++++++|||++++.+|+.+..|+..+.
T Consensus 32 l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~ 111 (216)
T PLN03110 32 FTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELR 111 (216)
T ss_pred HhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHH
Confidence 344553 4678999986 46667766 799999999999999999999999999999999999999999999998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..+.|+++|+||+|+.. .+..++....... ..+.++++||++|.|++++|+++.+.+
T Consensus 112 ~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~-----------------~~~~~~e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 112 DHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK-----------------EGLSFLETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred HhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 542 35789999999999864 2333343333222 346899999999999999999998754
No 88
>KOG0081|consensus
Probab=99.91 E-value=9.9e-24 Score=138.02 Aligned_cols=134 Identities=18% Similarity=0.253 Sum_probs=113.6
Q ss_pred CCCCC-CcccCCCCCc--eeEEEEC-------C----EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMG-------D----IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES 68 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~-------~----~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~ 68 (155)
++|.+ .+.++|+|+. .+.+.++ | +.+++|||+||++|+++...||++|-+++++||+++.++|-++
T Consensus 30 TD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnv 109 (219)
T KOG0081|consen 30 TDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNV 109 (219)
T ss_pred cCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHH
Confidence 44554 4567888875 5566652 1 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161 69 KYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 69 ~~~l~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
+.|+..+..+.-+.++-+++.+||+|+.+ .++..+....... .+++|+++||-+|.|+++.
T Consensus 110 rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k-----------------yglPYfETSA~tg~Nv~ka 172 (219)
T KOG0081|consen 110 RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK-----------------YGLPYFETSACTGTNVEKA 172 (219)
T ss_pred HHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH-----------------hCCCeeeeccccCcCHHHH
Confidence 99999998887778889999999999987 5677777777766 3568999999999999998
Q ss_pred HHHHHhh
Q psy2161 147 FRWLANY 153 (155)
Q Consensus 147 ~~~l~~~ 153 (155)
.+.|.+.
T Consensus 173 ve~Lldl 179 (219)
T KOG0081|consen 173 VELLLDL 179 (219)
T ss_pred HHHHHHH
Confidence 8887654
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=8.7e-23 Score=137.69 Aligned_cols=136 Identities=17% Similarity=0.309 Sum_probs=109.9
Q ss_pred CCCCCCCc-ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~~~-~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++++.. +.||.|.. ...+.+++ +++.+||+||++++...+..+++++|++++|+|+++++++.....|+..+.
T Consensus 21 l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 100 (163)
T cd01860 21 FVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQ 100 (163)
T ss_pred HHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 34555544 78898864 45666665 789999999999999999999999999999999999999999999999887
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.... .+.|+++++||+|+.+ ..+..+....... .++.++++||++|.|+.+++++|.+.+
T Consensus 101 ~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 101 RNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADE-----------------NGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5543 6789999999999874 3345555444433 236799999999999999999999877
Q ss_pred C
Q psy2161 155 D 155 (155)
Q Consensus 155 ~ 155 (155)
+
T Consensus 163 ~ 163 (163)
T cd01860 163 P 163 (163)
T ss_pred C
Confidence 4
No 90
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=6.1e-23 Score=142.79 Aligned_cols=126 Identities=16% Similarity=0.163 Sum_probs=94.8
Q ss_pred CCcccCCCCC-c--eeE--------EEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHH
Q psy2161 7 TAQHMPTLHP-T--SEE--------LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YEL 72 (155)
Q Consensus 7 ~~~~~pT~~~-~--~~~--------~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l 72 (155)
...+.||+|. . ... +.+++ +++++|||+|++. .....++++||++++|||++++.+|+.+. .|+
T Consensus 34 ~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~ 111 (195)
T cd01873 34 LATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWY 111 (195)
T ss_pred ccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHH
Confidence 3568899973 2 111 13444 8999999999975 35567899999999999999999999986 588
Q ss_pred HHHHhCCCCCCCcEEEEEeCCCcCC---------------------cCCHHHHHhhhcccCccCCCcccccccccCccEE
Q psy2161 73 DSLLADDALTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE 131 (155)
Q Consensus 73 ~~~~~~~~~~~~piilv~nK~Dl~~---------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (155)
..+.... ++.|+++|+||+|+.+ .++.++..+.... .++.
T Consensus 112 ~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~-----------------~~~~ 172 (195)
T cd01873 112 PEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKE-----------------LGIP 172 (195)
T ss_pred HHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHH-----------------hCCE
Confidence 8775432 4789999999999863 1233333333222 3468
Q ss_pred EEEeeeccCCChHHHHHHHHhh
Q psy2161 132 LFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 132 ~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
|++|||++|.|++++|+.+++.
T Consensus 173 ~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 173 YYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred EEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999999999999999864
No 91
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.90 E-value=4.8e-23 Score=139.58 Aligned_cols=135 Identities=17% Similarity=0.184 Sum_probs=102.1
Q ss_pred CCCCCC-CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDRT-AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+.++.+ ..+.||.+... ..+..++ +.+++|||||++++..++..++++++++++|||++++++++.+..|+..+..
T Consensus 21 ~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~ 100 (165)
T cd04140 21 FVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICE 100 (165)
T ss_pred HHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 345554 46778887643 3334433 7899999999999999999999999999999999999999998888876643
Q ss_pred CC--CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 78 DD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 78 ~~--~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.. ...+.|+++|+||+|+.. .+...+....... .++.+++|||++|.|++++|+||.+.
T Consensus 101 ~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 101 IKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATE-----------------WNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHH-----------------hCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 22 225789999999999865 2333333222222 24578999999999999999999753
No 92
>KOG0076|consensus
Probab=99.90 E-value=2.3e-24 Score=142.64 Aligned_cols=136 Identities=29% Similarity=0.576 Sum_probs=122.3
Q ss_pred CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
....||+|.+..++.+++..+.|||.+||+..+++|..||..|+++||++|+++++.|+.....++.+..+....++|++
T Consensus 51 ~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L 130 (197)
T KOG0076|consen 51 SKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVL 130 (197)
T ss_pred HHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+||.|+.+.....++...++.. .....+...+.+|||.+|.||.+...|+...+
T Consensus 131 ~lankqd~q~~~~~~El~~~~~~~-----------e~~~~rd~~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 131 VLANKQDLQNAMEAAELDGVFGLA-----------ELIPRRDNPFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred hhcchhhhhhhhhHHHHHHHhhhh-----------hhcCCccCccccchhhhcccHHHHHHHHHHHH
Confidence 999999998877777887777641 12445678899999999999999999998765
No 93
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=7.3e-23 Score=139.37 Aligned_cols=134 Identities=20% Similarity=0.311 Sum_probs=106.7
Q ss_pred CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.+.+ ..+.||++.. ...+.+++ +.+++|||+|++.++ .++..+++++|++++|||++++.+|..+..|+..+..
T Consensus 24 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T cd04115 24 AGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQ 103 (170)
T ss_pred hCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 4443 4678898864 45566666 899999999999887 5789999999999999999999999999999988876
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc---CCChHHHHHHHHh
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK---RQGFGNGFRWLAN 152 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~ 152 (155)
.....++|+++|+||+|+.+ .+...+....... .++.+++|||++ +.|++++|..+++
T Consensus 104 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 104 HSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADA-----------------HSMPLFETSAKDPSENDHVEAIFMTLAH 166 (170)
T ss_pred hcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHH-----------------cCCcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 55446799999999999865 3334443333332 346899999999 8999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 167 ~~ 168 (170)
T cd04115 167 KL 168 (170)
T ss_pred Hh
Confidence 65
No 94
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.90 E-value=7.7e-23 Score=137.83 Aligned_cols=133 Identities=19% Similarity=0.319 Sum_probs=105.6
Q ss_pred CCCCC-CCcccCCCCCce--eEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161 2 LKNDR-TAQHMPTLHPTS--EELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS 74 (155)
Q Consensus 2 l~~~~-~~~~~pT~~~~~--~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~ 74 (155)
+.++. ...+.||++... ..+.++ ++++++|||||++.+...+..+++++|++++|+|++++++++.+..|+..
T Consensus 20 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~ 99 (162)
T cd04106 20 FVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEK 99 (162)
T ss_pred HhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 34444 346788988763 445554 38999999999999999999999999999999999999999999999988
Q ss_pred HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+... ..+.|+++|+||+|+.. .+..++....... .+++++++||++|.|+++++++|..
T Consensus 100 ~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 100 VEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKR-----------------LQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred HHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 7542 35789999999999865 3444454444433 2457999999999999999999986
Q ss_pred h
Q psy2161 153 Y 153 (155)
Q Consensus 153 ~ 153 (155)
.
T Consensus 161 ~ 161 (162)
T cd04106 161 K 161 (162)
T ss_pred h
Confidence 4
No 95
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.90 E-value=1.4e-22 Score=137.75 Aligned_cols=134 Identities=19% Similarity=0.260 Sum_probs=107.0
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++++ ..+.||.|.. ...+..++ .++.+|||||++++...+..+++++|++++|+|++++.+++.+..|+.++..
T Consensus 25 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~ 104 (168)
T cd01866 25 TDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 104 (168)
T ss_pred HcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34443 4556788775 34555665 7899999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .++.|+++|+||.|+.+ ..+.++....... .++.++++||++|.|++++|.++.+.+
T Consensus 105 ~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 105 HS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE-----------------HGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred hC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43 35789999999999874 3455555444433 346799999999999999999998764
No 96
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1.9e-22 Score=135.89 Aligned_cols=136 Identities=19% Similarity=0.315 Sum_probs=109.3
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++.+ ..+.||.+.. ...+.+++ +++.+||+||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (161)
T cd01863 20 FTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELE 99 (161)
T ss_pred HHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHH
Confidence 344554 3478888875 34455655 789999999999999999999999999999999999999999988998887
Q ss_pred hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.....+.|+++|+||+|+.. ....++....... .++.++++||++|.|++++++++.+.+
T Consensus 100 ~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 100 TYSTNNDIVKMLVGNKIDKENREVTREEGLKFARK-----------------HNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred HhCCCCCCcEEEEEECCcccccccCHHHHHHHHHH-----------------cCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence 666567899999999999974 3344444444333 356899999999999999999998754
No 97
>PLN03118 Rab family protein; Provisional
Probab=99.90 E-value=1.3e-22 Score=142.67 Aligned_cols=136 Identities=20% Similarity=0.268 Sum_probs=104.5
Q ss_pred CCCCCCCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-HHHHHH
Q psy2161 2 LKNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDSLL 76 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-~l~~~~ 76 (155)
|.++.+..+.||.|.. ...+.+++ +++.+|||||++.+..++..+++++|++++|||++++++|+.+.. |...+.
T Consensus 34 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~ 113 (211)
T PLN03118 34 FISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE 113 (211)
T ss_pred HHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4456667888999875 45566665 789999999999999999999999999999999999999998865 444443
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
......+.|+++|+||+|+.. ....++....... .++.+++|||++|.|++++|++|.+.+
T Consensus 114 ~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~-----------------~~~~~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 114 LYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKE-----------------HGCLFLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred HhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222334679999999999865 2333333333222 345799999999999999999998754
No 98
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.90 E-value=2.3e-22 Score=135.54 Aligned_cols=133 Identities=24% Similarity=0.375 Sum_probs=112.3
Q ss_pred CCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 4 NDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 4 ~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
++. ...+.||.|.. ...+..++ +.+++||++|+..+...+..+++++|++|+|||++++++|+.+..|+..+...
T Consensus 21 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~ 100 (162)
T PF00071_consen 21 NGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKY 100 (162)
T ss_dssp HSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 344 45788999876 45566656 88999999999999999999999999999999999999999999999998755
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .+.|+++++||.|+.+ .++.++....... .+..+++|||+++.|+.++|..+.+.+
T Consensus 101 ~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 101 KP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE-----------------LGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp ST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH-----------------TTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred cc-ccccceeeeccccccccccchhhHHHHHHHH-----------------hCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 43 4689999999999886 6677777666655 336899999999999999999998764
No 99
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.90 E-value=3.8e-22 Score=134.47 Aligned_cols=134 Identities=20% Similarity=0.286 Sum_probs=106.6
Q ss_pred CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++. ...+.||.+.. ...+.+++ +.+++||+||++.+...+..+++++|++++|+|++++.++..+..|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd04113 21 VENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARA 100 (161)
T ss_pred HhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444 35567787764 34455555 7899999999999999999999999999999999999999999999987753
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. ..++.|+++++||+|+.. .....++...... .++.++++||++|.|++++|+++++.+
T Consensus 101 ~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 101 L-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE-----------------NGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred h-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3 235789999999999865 3444555554443 346899999999999999999998764
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.89 E-value=1.4e-22 Score=138.25 Aligned_cols=132 Identities=15% Similarity=0.266 Sum_probs=100.4
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~ 77 (155)
.++.+ ..+.||.+.. ...+..++ +.+++|||||++.+..++..+++++|++++|||++++++|+.+. .|+..+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~ 98 (174)
T smart00174 19 TTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH 98 (174)
T ss_pred HhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34443 4567887665 34556666 68999999999999999999999999999999999999999885 58887764
Q ss_pred CCCCCCCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCC
Q psy2161 78 DDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQG 142 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 142 (155)
.. +++|+++|+||+|+.... +.++...... ..+ ..+++|||++|.|
T Consensus 99 ~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 99 FC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAK-----------------RIGAVKYLECSALTQEG 159 (174)
T ss_pred hC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHH-----------------HcCCcEEEEecCCCCCC
Confidence 32 579999999999986421 1111111111 122 3799999999999
Q ss_pred hHHHHHHHHhh
Q psy2161 143 FGNGFRWLANY 153 (155)
Q Consensus 143 i~~~~~~l~~~ 153 (155)
++++|+.+.+.
T Consensus 160 v~~lf~~l~~~ 170 (174)
T smart00174 160 VREVFEEAIRA 170 (174)
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 101
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.89 E-value=3.8e-22 Score=134.76 Aligned_cols=128 Identities=17% Similarity=0.342 Sum_probs=101.7
Q ss_pred CcccCCCCCc--eeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
..+.||.|+. ...+.+. ..++++|||||++.+..++..+++++|++++|+|++++.+++.+..|+..+.... .
T Consensus 29 ~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~ 106 (164)
T cd04101 29 KNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--K 106 (164)
T ss_pred ccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--C
Confidence 5788999876 3445443 2899999999999999999999999999999999999999998899998876543 4
Q ss_pred CCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+++|+||+|+.+. ....+....... .++.+++|||++|.|++++|+++.+.+
T Consensus 107 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 107 HMPGVLVGNKMDLADKAEVTDAQAQAFAQA-----------------NQLKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred CCCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence 6899999999998652 233332222211 235799999999999999999998754
No 102
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.89 E-value=2.6e-22 Score=139.24 Aligned_cols=134 Identities=19% Similarity=0.270 Sum_probs=104.9
Q ss_pred CCCCCCC--cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRTA--QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~~--~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
+.++.+. .+.||+|.. ...+.+++ +++.+||++|++++..++..+++++|++++|||++++.+++.+..|+..+
T Consensus 20 ~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i 99 (193)
T cd04118 20 YVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL 99 (193)
T ss_pred HHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 4455553 488999875 45677776 67889999999999999999999999999999999999999998999888
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161 76 LADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW 149 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 149 (155)
.... .+.|+++|+||+|+.+. +...++...... .+..++++||++|.|++++|++
T Consensus 100 ~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~ 160 (193)
T cd04118 100 QNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-----------------IKAQHFETSSKTGQNVDELFQK 160 (193)
T ss_pred HhcC--CCCCEEEEEEcccccccccccCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHH
Confidence 6432 46899999999998542 122233332222 2457899999999999999999
Q ss_pred HHhhc
Q psy2161 150 LANYI 154 (155)
Q Consensus 150 l~~~i 154 (155)
+.+.+
T Consensus 161 i~~~~ 165 (193)
T cd04118 161 VAEDF 165 (193)
T ss_pred HHHHH
Confidence 98653
No 103
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.89 E-value=2e-22 Score=139.08 Aligned_cols=134 Identities=13% Similarity=0.183 Sum_probs=102.9
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~ 75 (155)
+.++++ ..+.||++.. ...+... + +.+.+|||||++.+...+..++++||++++|||++++.+|+.+. .|+..+
T Consensus 20 l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~ 99 (187)
T cd04132 20 YSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEV 99 (187)
T ss_pred HHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 344553 5677888876 3445554 3 78999999999999999999999999999999999999998885 587776
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161 76 LADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 148 (155)
... ..+.|+++|+||+|+... +...+..+.... .++ .+++|||++|.|++++|+
T Consensus 100 ~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~e~Sa~~~~~v~~~f~ 160 (187)
T cd04132 100 NHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKK-----------------QGAFAYLECSAKTMENVEEVFD 160 (187)
T ss_pred HHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHH-----------------cCCcEEEEccCCCCCCHHHHHH
Confidence 532 247899999999998642 233344443332 223 789999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 161 ~l~~~~ 166 (187)
T cd04132 161 TAIEEA 166 (187)
T ss_pred HHHHHH
Confidence 998754
No 104
>KOG0077|consensus
Probab=99.89 E-value=2.2e-23 Score=137.08 Aligned_cols=155 Identities=62% Similarity=1.071 Sum_probs=144.8
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
+||+++...++||..++...+.++|.+++-+|.+|+..-+..|..|+..+|+++|.+|+.+.+.|.+.+..++.+++...
T Consensus 39 MLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~ 118 (193)
T KOG0077|consen 39 MLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDES 118 (193)
T ss_pred HHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
..+.|+++.+||+|.+.....++....+...+.+..++..+......+.+.++.||...+.+.-+.|.|+...++
T Consensus 119 la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 119 LATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred HhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 889999999999999998899999999998888878888887778888999999999999999999999988764
No 105
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.89 E-value=2.4e-22 Score=136.58 Aligned_cols=136 Identities=16% Similarity=0.227 Sum_probs=106.3
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.++.+ ..+.||.+.. ...+.+++ +.+++|||||++++..+++.++++++++++|+|.+++++++....|...+...
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~ 101 (168)
T cd04177 22 VQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRI 101 (168)
T ss_pred HhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34554 5677888765 45566665 78999999999999999999999999999999999999999998888888754
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.|+++++||+|+.+ ....++........ ...+++++||++|.|++++|+++..++
T Consensus 102 ~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 102 KDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQW----------------GNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred hCCCCCCEEEEEEChhccccCccCHHHHHHHHHHc----------------CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4446799999999999865 22333333322221 125799999999999999999998754
No 106
>PLN03108 Rab family protein; Provisional
Probab=99.89 E-value=5.1e-22 Score=139.69 Aligned_cols=135 Identities=20% Similarity=0.291 Sum_probs=108.2
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++++ ..+.||++.. ...+.+++ +.+++|||+|++.+...+..+++++|++++|+|++++.+|+.+..|+..+.
T Consensus 26 l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~ 105 (210)
T PLN03108 26 FTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDAR 105 (210)
T ss_pred HHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence 344443 4567899876 44566666 789999999999999999999999999999999999999999989988876
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ....|+++|+||+|+.. ..+..+....... .++.++++||+++.|++++|+|+++.+
T Consensus 106 ~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 106 QHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE-----------------HGLIFMEASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred Hhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 433 35789999999999865 3455555555443 346899999999999999999998653
No 107
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.89 E-value=1.1e-21 Score=131.96 Aligned_cols=134 Identities=21% Similarity=0.259 Sum_probs=105.8
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++.. ..+.||.+.. ...+.+++ +++++|||||+..+..++..+++++|++++|+|++++++|+.+..|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd01861 21 MYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRD 100 (161)
T ss_pred HcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34443 3567888764 55666666 6899999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... .+.|+++++||+|+.+ ....++....... .++.++++||++|.|++++++++.+.+
T Consensus 101 ~~~-~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 101 ERG-NDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE-----------------LNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred hCC-CCCEEEEEEEChhccccCccCHHHHHHHHHH-----------------hCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 432 3689999999999854 2344444443332 346899999999999999999998764
No 108
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.89 E-value=3.8e-22 Score=134.76 Aligned_cols=132 Identities=15% Similarity=0.222 Sum_probs=99.9
Q ss_pred CCCCC-CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++++ +.+.||.+... ..+.+++ +.+++|||+|++.+..++..+++++|++++|+|++++.++..+..|+..+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd04124 21 LMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELRE 100 (161)
T ss_pred HhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34443 34556766542 3344554 7899999999999999999999999999999999999999998899988864
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. .++.|+++|+||+|+.... ..+....... .+++++++||++|.|++++|+.+.+.+
T Consensus 101 ~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 101 Y--RPEIPCIVVANKIDLDPSV-TQKKFNFAEK-----------------HNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred h--CCCCcEEEEEECccCchhH-HHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3 2468999999999984321 1122221111 246899999999999999999998753
No 109
>KOG0097|consensus
Probab=99.89 E-value=6.1e-22 Score=127.51 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=106.2
Q ss_pred ccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161 10 HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 10 ~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p 85 (155)
-.-|+|+. .+.+++.| +++++|||+|+++|+...+.||++|.+.+.|+|++...++..+..|+.+..+ ...++.-
T Consensus 40 cphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~-ltnpnt~ 118 (215)
T KOG0097|consen 40 CPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN-LTNPNTV 118 (215)
T ss_pred CCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhc-cCCCceE
Confidence 34578875 67777766 8999999999999999999999999999999999999999999999988843 3446678
Q ss_pred EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 86 ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 86 iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+++++||.|+.. .++.++..++.+. .++.++++|||+|.|+++.|-..++
T Consensus 119 i~lignkadle~qrdv~yeeak~faee-----------------ngl~fle~saktg~nvedafle~ak 170 (215)
T KOG0097|consen 119 IFLIGNKADLESQRDVTYEEAKEFAEE-----------------NGLMFLEASAKTGQNVEDAFLETAK 170 (215)
T ss_pred EEEecchhhhhhcccCcHHHHHHHHhh-----------------cCeEEEEecccccCcHHHHHHHHHH
Confidence 999999999976 5678888888777 4578999999999999998866544
No 110
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.88 E-value=8.7e-22 Score=139.49 Aligned_cols=134 Identities=17% Similarity=0.126 Sum_probs=101.4
Q ss_pred CCCCCC--CcccCCCC--CceeEEEECC--EEEEEEEcCCChhhHHhHHhhcC-CCCEEEEEEECCCCCchHHHHHHHHH
Q psy2161 2 LKNDRT--AQHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFP-AVDAIVFIIDASDRSRFPESKYELDS 74 (155)
Q Consensus 2 l~~~~~--~~~~pT~~--~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~-~ad~ii~v~D~~~~~~~~~~~~~l~~ 74 (155)
+..|++ ..+.||.+ .....+.+++ +++.+|||+|+. ......+++ ++|++++|||++++.+|+.+..|+..
T Consensus 20 ~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~ 97 (221)
T cd04148 20 FTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQ 97 (221)
T ss_pred HhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 345555 56778886 3456677755 889999999998 333445666 99999999999999999999999988
Q ss_pred HHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 75 LLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 75 ~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+.......++|+++|+||+|+.. .+..++....... .++.++++||++|.|++++|+++.+
T Consensus 98 l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~SA~~~~gv~~l~~~l~~ 160 (221)
T cd04148 98 LRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVV-----------------FDCKFIETSAGLQHNVDELLEGIVR 160 (221)
T ss_pred HHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHH
Confidence 87654446799999999999864 2333333332222 2457999999999999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 161 ~~ 162 (221)
T cd04148 161 QI 162 (221)
T ss_pred HH
Confidence 64
No 111
>KOG0088|consensus
Probab=99.88 E-value=4e-23 Score=135.08 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=99.9
Q ss_pred eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 18 SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 18 ~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
.+.+.+.+ ..+.+|||+||++|..+.+.||++++++++|||+++.++|+.++.|..++..-.. ..+.+++|+||+||
T Consensus 52 ~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlG-nei~l~IVGNKiDL 130 (218)
T KOG0088|consen 52 NKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLG-NEIELLIVGNKIDL 130 (218)
T ss_pred hcccccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhC-CeeEEEEecCcccH
Confidence 34455544 7899999999999999999999999999999999999999999999999964332 46789999999999
Q ss_pred CC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 96 FD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 96 ~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+ .++.++...+.+. -+-.+.++||+.+.||.|+|+.|...
T Consensus 131 EeeR~Vt~qeAe~YAes-----------------vGA~y~eTSAk~N~Gi~elFe~Lt~~ 173 (218)
T KOG0088|consen 131 EEERQVTRQEAEAYAES-----------------VGALYMETSAKDNVGISELFESLTAK 173 (218)
T ss_pred HHhhhhhHHHHHHHHHh-----------------hchhheecccccccCHHHHHHHHHHH
Confidence 76 6777777777665 23478999999999999999988754
No 112
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.88 E-value=1.6e-21 Score=131.42 Aligned_cols=129 Identities=22% Similarity=0.321 Sum_probs=105.6
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++++||+||+..+...+..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~-~~ 105 (164)
T smart00175 27 EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYAD-PN 105 (164)
T ss_pred CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CC
Confidence 4566888865 45667766 7899999999999999999999999999999999999999999899988865432 57
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.. ....+.+.+.... .+++++++||++|.|++++++++.+.+
T Consensus 106 ~pivvv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 106 VVIMLVGNKSDLEDQRQVSREEAEAFAEE-----------------HGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CeEEEEEEchhcccccCCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999865 3344555554433 346799999999999999999998764
No 113
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.88 E-value=9.5e-22 Score=133.92 Aligned_cols=132 Identities=17% Similarity=0.167 Sum_probs=101.0
Q ss_pred CCCCCC--CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~--~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
+.++.+ ..+.||++.. ...+.+++ +.+.+||++|+..+..++..+++++|++++|+|++++.+++.+..|+..+
T Consensus 24 ~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~ 103 (169)
T cd01892 24 FLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKY 103 (169)
T ss_pred HhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 456665 5789999975 45677777 78999999999999999999999999999999999999998888888765
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHh
Q psy2161 76 LADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.. ..++|+++|+||+|+.+.. ...+..+.... .++ .++++||++|.|++++|+.+.+
T Consensus 104 ~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~~v~~lf~~l~~ 163 (169)
T cd01892 104 FM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK-----------------LGLPPPLHFSSKLGDSSNELFTKLAT 163 (169)
T ss_pred cc---CCCCeEEEEEEcccccccccccccCHHHHHHH-----------------cCCCCCEEEEeccCccHHHHHHHHHH
Confidence 32 2368999999999986421 11111221111 111 3589999999999999999987
Q ss_pred h
Q psy2161 153 Y 153 (155)
Q Consensus 153 ~ 153 (155)
.
T Consensus 164 ~ 164 (169)
T cd01892 164 A 164 (169)
T ss_pred H
Confidence 4
No 114
>KOG0393|consensus
Probab=99.88 E-value=2.9e-22 Score=137.12 Aligned_cols=142 Identities=18% Similarity=0.289 Sum_probs=110.1
Q ss_pred CCcccCCCCCc-eeEEEEC-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL 81 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~ 81 (155)
.+.|+||+..+ ...+.++ | +.+.+|||+||+.|..+++..|.++|++++||++.++.+|+++ ..|+.++..+ .
T Consensus 30 p~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--c 107 (198)
T KOG0393|consen 30 PEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHH--C 107 (198)
T ss_pred cccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--C
Confidence 46899999876 6778884 6 8999999999999999999999999999999999999999987 5999999644 3
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
++.|++|||+|.||++.....+-.........+..++..+.+++.. ..|++|||++..|+.++|+...+
T Consensus 108 p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga--~~y~EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 108 PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGA--VKYLECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCc--ceeeeehhhhhCCcHHHHHHHHH
Confidence 7899999999999984221111111112333344444455555554 67999999999999999987654
No 115
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=6.5e-22 Score=133.93 Aligned_cols=130 Identities=19% Similarity=0.281 Sum_probs=98.4
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LT 82 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~ 82 (155)
..+.||.+.. ...+.+++ +++++||+||+.. +...+..+++++|++++|+|++++.+|+.+..|+..+..... ..
T Consensus 26 ~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 105 (165)
T cd04146 26 GEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDR 105 (165)
T ss_pred cccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4667877543 44555655 6899999999885 345677889999999999999999999999888877764332 34
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC-CChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR-QGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.. .+..++....... .+..+++|||++| .|++++|+++++.+
T Consensus 106 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 106 EIPVILVGNKADLLHYRQVSTEEGEKLASE-----------------LGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCEEEEEECCchHHhCccCHHHHHHHHHH-----------------cCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 789999999999854 3344444443332 2357999999999 59999999998754
No 116
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.88 E-value=3.6e-21 Score=130.78 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=103.3
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC---
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA--- 80 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~--- 80 (155)
..+.||.+.. ...+.+++ +++++||+||++.+...+..+++++|++++|+|++++.+++....|...++....
T Consensus 27 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (172)
T cd01862 27 NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSD 106 (172)
T ss_pred cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccC
Confidence 4556788764 45566666 7888999999999999999999999999999999999999888888877654332
Q ss_pred CCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 81 LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..++|+++|+||+|+.. ....+++...+... ....++++||++|.|++++++++.+.
T Consensus 107 ~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 107 PENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----------------GNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred CCCceEEEEEECcccccccccCHHHHHHHHHHc----------------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 23789999999999973 44555555554431 23689999999999999999998864
No 117
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.88 E-value=2.2e-21 Score=135.31 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPES 68 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~ 68 (155)
+.++++ ..+.||.+.. ...+.+++ +++++|||||...+ ......++++||++++|||++++++|+.+
T Consensus 20 ~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~ 99 (198)
T cd04142 20 FLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYV 99 (198)
T ss_pred HHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHH
Confidence 445554 4588999864 34566777 78999999996532 11234567899999999999999999999
Q ss_pred HHHHHHHHhCC--CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 69 KYELDSLLADD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 69 ~~~l~~~~~~~--~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
..|+..+.... ...++|+++|+||+|+.. ....++....... ..++.+++|||++|.|++
T Consensus 100 ~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~~~e~Sak~g~~v~ 163 (198)
T cd04142 100 KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK----------------SWKCGYLECSAKYNWHIL 163 (198)
T ss_pred HHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH----------------hcCCcEEEecCCCCCCHH
Confidence 99988887543 245789999999999965 2233333322211 134689999999999999
Q ss_pred HHHHHHHhh
Q psy2161 145 NGFRWLANY 153 (155)
Q Consensus 145 ~~~~~l~~~ 153 (155)
++|+.+.+.
T Consensus 164 ~lf~~i~~~ 172 (198)
T cd04142 164 LLFKELLIS 172 (198)
T ss_pred HHHHHHHHH
Confidence 999998864
No 118
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.88 E-value=2e-21 Score=135.46 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=104.6
Q ss_pred CCCCC-CcccCCCCC-ceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.++.+ ..+.||.+. ....+.+++ +++++||+||+..+..++..+++++|++++|||++++.+++.+..|+..+...
T Consensus 20 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~ 99 (198)
T cd04147 20 LYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEV 99 (198)
T ss_pred HhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34443 345677753 355677777 78999999999999999999999999999999999999999999998888765
Q ss_pred CCCCCCcEEEEEeCCCcCCc---CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....++|+++|+||+|+... +...+..+.... ..+..++++||++|.|++++|+++.+.+
T Consensus 100 ~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 100 KEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----------------DWNCGFVETSAKDNENVLEVFKELLRQA 162 (198)
T ss_pred cCCCCCcEEEEEEccccccccccccHHHHHHHHHh----------------hcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 55467999999999998542 222232222211 1234789999999999999999998754
No 119
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.88 E-value=1.3e-21 Score=133.53 Aligned_cols=129 Identities=15% Similarity=0.251 Sum_probs=96.9
Q ss_pred CCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhC
Q psy2161 4 NDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLAD 78 (155)
Q Consensus 4 ~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~ 78 (155)
++. ...+.||.... ...+..++ +++++|||||++.+...+..+++++|++++|||++++.+|+... .|+..+...
T Consensus 22 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~ 101 (173)
T cd04130 22 TNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKH 101 (173)
T ss_pred hCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhh
Confidence 344 34677886443 34566666 78999999999999999999999999999999999999998874 688777542
Q ss_pred CCCCCCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCCh
Q psy2161 79 DALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGF 143 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 143 (155)
..+.|+++++||+|+.... ..++...... ..+ ..+++|||++|.|+
T Consensus 102 --~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~-----------------~~~~~~~~e~Sa~~~~~v 162 (173)
T cd04130 102 --NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAE-----------------KIGACEYIECSALTQKNL 162 (173)
T ss_pred --CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHH-----------------HhCCCeEEEEeCCCCCCH
Confidence 2468999999999985421 1112222111 123 38999999999999
Q ss_pred HHHHHHHH
Q psy2161 144 GNGFRWLA 151 (155)
Q Consensus 144 ~~~~~~l~ 151 (155)
+++|+.+.
T Consensus 163 ~~lf~~~~ 170 (173)
T cd04130 163 KEVFDTAI 170 (173)
T ss_pred HHHHHHHH
Confidence 99999875
No 120
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.87 E-value=4.6e-21 Score=128.80 Aligned_cols=128 Identities=21% Similarity=0.330 Sum_probs=101.0
Q ss_pred cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
.+.||.+.. ...+.+++ ..+.+||+||+..+...+..+++++|++++|+|++++++++....|+.++..... .++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~ 106 (162)
T cd04123 28 KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNI 106 (162)
T ss_pred CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCC
Confidence 455666553 34455555 6899999999999999999999999999999999999999998889888865433 378
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.. .....++...... .++.++++||++|.|++++++|+.+.+
T Consensus 107 piiiv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 107 SLVIVGNKIDLERQRVVSKSEAEEYAKS-----------------VGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999865 3344444444333 345789999999999999999998764
No 121
>KOG0395|consensus
Probab=99.87 E-value=5.5e-21 Score=132.69 Aligned_cols=136 Identities=23% Similarity=0.297 Sum_probs=114.8
Q ss_pred CCCCC-CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 2 LKNDR-TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 2 l~~~~-~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+..++ ...|.||++.. .+.+.+++ ..+.++||+|++.+..+...|+++++++++||++++..||+.+..++..++.
T Consensus 23 f~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r 102 (196)
T KOG0395|consen 23 FLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILR 102 (196)
T ss_pred ecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 34455 46789999974 67777776 8999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.......|+++|+||+|+.. .++.++....... ..+.++++||+...|++++|..|.+.+
T Consensus 103 ~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~-----------------~~~~f~E~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 103 VKGRDDVPIILVGNKCDLERERQVSEEEGKALARS-----------------WGCAFIETSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred hhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh-----------------cCCcEEEeeccCCcCHHHHHHHHHHHH
Confidence 66667789999999999976 5666665554333 346799999999999999999998754
No 122
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.87 E-value=9.1e-21 Score=127.68 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=103.3
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ......++ +.+.+||+||+..+...+..+++.++++++|+|++++.++.....|+..+.......++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 106 (164)
T cd04139 27 EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNV 106 (164)
T ss_pred cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566777764 34445554 78999999999999999999999999999999999999999998898888765444679
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .....+....... .+.+++++||++|.|++++|+++.+++
T Consensus 107 piiiv~NK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 107 PLLLVGNKCDLEDKRQVSSEEAANLARQ-----------------WGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999865 2333333333332 235799999999999999999998764
No 123
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.86 E-value=8.6e-21 Score=129.44 Aligned_cols=148 Identities=14% Similarity=0.230 Sum_probs=101.5
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
+.++.+ ..+.||.+.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++++|+.+. .|+..+.
T Consensus 21 ~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~ 100 (175)
T cd01870 21 FSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 100 (175)
T ss_pred HhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 445554 4688999875 45666665 68999999999999999888999999999999999999998875 5777665
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|+++|+||+|+...... .++.. ..........+.... .......+++|||++|.|++++|+++.+..
T Consensus 101 ~~--~~~~piilv~nK~Dl~~~~~~~~~i~~-~~~~~v~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 101 HF--CPNVPIILVGNKKDLRNDEHTRRELAK-MKQEPVKPEEGRDMA--NKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred hh--CCCCCEEEEeeChhcccChhhhhhhhh-ccCCCccHHHHHHHH--HHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 32 247899999999998642111 11110 000000000000000 001234799999999999999999998653
No 124
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.86 E-value=9e-21 Score=129.23 Aligned_cols=147 Identities=18% Similarity=0.237 Sum_probs=99.8
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~ 77 (155)
..+++ ..+.||.+.. ...+..++ +.+.+|||||+..+...+..+++++|++++|+|.+++.+|+... .|+..+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~ 100 (174)
T cd04135 21 ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKE 100 (174)
T ss_pred HhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34554 4577887654 44566666 67899999999999999999999999999999999999998875 56666643
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. ..+.|+++|+||+|+.+................+...+. ..... ....+++|||++|.|++++|+.+++.+
T Consensus 101 ~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 101 Y--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQ---KLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred h--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHH---HHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 3 467999999999998542111111111110000000000 00111 123689999999999999999998753
No 125
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.86 E-value=2e-20 Score=128.31 Aligned_cols=135 Identities=19% Similarity=0.250 Sum_probs=106.7
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.++.+ ..+.||.+.. ...+.+++ +.+++|||||+.++...+..++..++++++|+|.++..+++.+..|+..+++.
T Consensus 22 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 101 (180)
T cd04137 22 VEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM 101 (180)
T ss_pred HhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34444 3577888764 56666765 67899999999999999999999999999999999999999999998888776
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.|+++++||+|+.. .....+....... ..+.++++||++|.|+.+++.++.+.+
T Consensus 102 ~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 102 LGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES-----------------WGAAFLESSARENENVEEAFELLIEEI 162 (180)
T ss_pred cCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5556789999999999864 2333333333322 235789999999999999999998754
No 126
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.86 E-value=2.8e-20 Score=124.15 Aligned_cols=132 Identities=19% Similarity=0.315 Sum_probs=104.9
Q ss_pred CCCCCC-cccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~~-~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++... .+.||.+... ..+..++ ..+.+||+||+..+...+..+++++|++++|+|++++++++.+..|+..+..
T Consensus 21 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~ 100 (159)
T cd00154 21 VDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKE 100 (159)
T ss_pred HhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 344433 3578888764 4444434 8899999999999999999999999999999999998899999899988865
Q ss_pred CCCCCCCcEEEEEeCCCcC--CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 78 DDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.. ..+.|+++++||+|+. .....+++...... ...+++++||+++.|++++++++.+
T Consensus 101 ~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 101 YA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE-----------------NGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred hC-CCCCcEEEEEEcccccccccccHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHhC
Confidence 43 2568999999999995 34455555554443 3568999999999999999999864
No 127
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.85 E-value=5e-20 Score=124.94 Aligned_cols=128 Identities=18% Similarity=0.230 Sum_probs=98.6
Q ss_pred cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
.+.||++.. ...+.+++ +.+.+||+||+..+...+..+++.+|++++|+|+++..++..+..|+..+... ...+.
T Consensus 35 ~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~ 113 (169)
T cd04114 35 GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY-ANNKV 113 (169)
T ss_pred CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCC
Confidence 456777743 45667766 77999999999999999999999999999999999988998888888776432 23468
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ ............. ....+++|||++|.|+.++|+++.+.+
T Consensus 114 ~~i~v~NK~D~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 114 ITILVGNKIDLAERREVSQQRAEEFSDA-----------------QDMYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred eEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999864 2222222222221 235799999999999999999998753
No 128
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.85 E-value=3.3e-20 Score=125.84 Aligned_cols=135 Identities=17% Similarity=0.227 Sum_probs=95.7
Q ss_pred CCCCCCCcccCCCCC-ceeEEEE--CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161 2 LKNDRTAQHMPTLHP-TSEELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA 77 (155)
Q Consensus 2 l~~~~~~~~~pT~~~-~~~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~ 77 (155)
+.++.+....|+... ......+ .++++++|||||+..+...+..+++.+|++++|||++++.+++.+. .|+..+..
T Consensus 20 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~ 99 (166)
T cd01893 20 LVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRR 99 (166)
T ss_pred HHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 445665444444333 2333344 3489999999999988888888999999999999999999998875 57666643
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 78 DDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.. .+.|+++|+||+|+.+.... .++...... .. ....+++|||++|.|++++|+.+.+.
T Consensus 100 ~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~e~Sa~~~~~v~~lf~~~~~~ 162 (166)
T cd01893 100 LG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNE--------------FR-EIETCVECSAKTLINVSEVFYYAQKA 162 (166)
T ss_pred hC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHH--------------Hh-cccEEEEeccccccCHHHHHHHHHHH
Confidence 32 37899999999999763321 222221111 00 11268999999999999999998864
No 129
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.84 E-value=2.3e-19 Score=120.30 Aligned_cols=131 Identities=19% Similarity=0.277 Sum_probs=104.4
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+..++ +++++||+||+..+...+..+++++|++++|+|+++++++.....|+..+........
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 104 (160)
T cd00876 25 VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDED 104 (160)
T ss_pred CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35667777643 44555664 7899999999999999999999999999999999999999998888888876544457
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++++||+|+.. ....+++...... ...+++++||+++.|+.+++++|.+.+
T Consensus 105 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~S~~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 105 IPIVLVGNKCDLENERQVSKEEGKALAKE-----------------WGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred CcEEEEEECCcccccceecHHHHHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence 99999999999875 2344454444443 225799999999999999999998764
No 130
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=2e-19 Score=126.87 Aligned_cols=132 Identities=19% Similarity=0.355 Sum_probs=103.9
Q ss_pred CCCC-CcccCCCCCceeEEEE--C--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 4 NDRT-AQHMPTLHPTSEELSM--G--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 4 ~~~~-~~~~pT~~~~~~~~~~--~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
.|.+ ..+.||+|.......+ + ++.+++|||+|+..+...+..++++++++++|+|+++..+|..+..|+..+...
T Consensus 31 ~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~ 110 (215)
T PTZ00132 31 TGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV 110 (215)
T ss_pred hCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4443 5788999987555543 3 389999999999999999999999999999999999999999999999888643
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++++||+|+.+.....+....... .++.++++||++|.|++++|.++++.+
T Consensus 111 --~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 111 --CENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYYDISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred --CCCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 257899999999998653222222222222 346899999999999999999998754
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.83 E-value=1.2e-19 Score=123.17 Aligned_cols=132 Identities=20% Similarity=0.329 Sum_probs=97.1
Q ss_pred CCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~ 77 (155)
.++.+ ..+.||.... ...+...+ +.+++||+||+..+...+..+++.+|++++|||.+++.++.... .|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~ 100 (171)
T cd00157 21 TTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRH 100 (171)
T ss_pred HhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 34443 5667777654 34445554 78999999999988888888899999999999999988887764 56666654
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCC-------------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 78 DDALTDVPILILGNKIDIFDAAS-------------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
.. .++|+++|+||+|+.+... ..+..+.... .....++++||++|.|++
T Consensus 101 ~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~ 162 (171)
T cd00157 101 YC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE----------------IGAIGYMECSALTQEGVK 162 (171)
T ss_pred hC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH----------------hCCeEEEEeecCCCCCHH
Confidence 32 3799999999999875332 2222222222 122389999999999999
Q ss_pred HHHHHHHh
Q psy2161 145 NGFRWLAN 152 (155)
Q Consensus 145 ~~~~~l~~ 152 (155)
++++++.+
T Consensus 163 ~l~~~i~~ 170 (171)
T cd00157 163 EVFEEAIR 170 (171)
T ss_pred HHHHHHhh
Confidence 99999875
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.82 E-value=3.4e-19 Score=121.96 Aligned_cols=112 Identities=19% Similarity=0.234 Sum_probs=82.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
++++++|||||+..+...+..+++++|++++|+|+++..++.....|.... . .++|+++|+||+|+.+.. ....
T Consensus 66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~-~~~~ 139 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD-PERV 139 (179)
T ss_pred cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC-HHHH
Confidence 488999999999999999999999999999999998876665554443322 1 368999999999986422 1111
Q ss_pred HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.+.+.. ........++++||++|.|++++++++.+.++
T Consensus 140 ~~~~~~-------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 140 KQQIED-------------VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHHHH-------------HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 111111 01112235899999999999999999998764
No 133
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.81 E-value=1.6e-18 Score=119.80 Aligned_cols=128 Identities=13% Similarity=0.217 Sum_probs=95.5
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+..++ ..+.+||++|+..+...+..+++.++++++|+|+++.++|+.+. .|+..+.... ++
T Consensus 28 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~ 105 (187)
T cd04129 28 EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PN 105 (187)
T ss_pred cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence 4566777664 44566666 67999999999988877777889999999999999999998886 6888876433 46
Q ss_pred CcEEEEEeCCCcCCcC------------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 84 VPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.|+++|+||+|+.+.. ..++....... .....+++|||++|.|++++|+++.
T Consensus 106 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~e~Sa~~~~~v~~~f~~l~ 169 (187)
T cd04129 106 VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE----------------IGAKKYMECSALTGEGVDDVFEAAT 169 (187)
T ss_pred CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH----------------hCCcEEEEccCCCCCCHHHHHHHHH
Confidence 9999999999985311 11111111111 0124799999999999999999998
Q ss_pred hh
Q psy2161 152 NY 153 (155)
Q Consensus 152 ~~ 153 (155)
+.
T Consensus 170 ~~ 171 (187)
T cd04129 170 RA 171 (187)
T ss_pred HH
Confidence 64
No 134
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.80 E-value=5.8e-19 Score=123.28 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=79.3
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEEC-------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~ 71 (155)
+.++.+ ..+.||+|.. .+.+.++ .+.+++|||+|++.++.++..||+++|++|+|||++++.+|+.+..|
T Consensus 20 ~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W 99 (202)
T cd04102 20 ICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRW 99 (202)
T ss_pred HHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHH
Confidence 445554 4678999964 4455552 27899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC------------------CCCCCcEEEEEeCCCcCC
Q psy2161 72 LDSLLADD------------------ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 72 l~~~~~~~------------------~~~~~piilv~nK~Dl~~ 97 (155)
+.++.... ...+.|+++|+||+|+.+
T Consensus 100 ~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 100 SLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 99987532 124689999999999865
No 135
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.80 E-value=2.1e-18 Score=116.83 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=84.4
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhh----H-----HhHHhhcCCCCEEEEEEECCCCCch--HHHHHHHHHHHhCCC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQA----R-----RVWRDYFPAVDAIVFIIDASDRSRF--PESKYELDSLLADDA 80 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~-----~~~~~~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~~~~~~~ 80 (155)
+|.+.....+.++++++++|||||+... + .........+|++++|+|+++..++ +....|+..+...
T Consensus 33 ~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~-- 110 (168)
T cd01897 33 TTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL-- 110 (168)
T ss_pred cccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhh--
Confidence 4566666667777899999999997320 0 1111111236899999999887554 5556677776432
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++|+||+|+.+.....+..+.. ....+.+++|||++|.|++++++++.+.+
T Consensus 111 ~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 111 FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----------------ELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred cCcCCeEEEEEccccCchhhHHHHHHhh-----------------hhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 2478999999999986532222211211 12356799999999999999999998764
No 136
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.78 E-value=1.1e-17 Score=117.03 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=105.9
Q ss_pred CCCCCCCcccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCC-CEEEEEEECCCC-CchHHHHHHHHHH
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV-DAIVFIIDASDR-SRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~a-d~ii~v~D~~~~-~~~~~~~~~l~~~ 75 (155)
|.+++...+.|++..+...+... +..+.+||+||+.+++..+..+++.+ +++|||+|+++. .++..+..++..+
T Consensus 20 l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~i 99 (203)
T cd04105 20 LTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDI 99 (203)
T ss_pred HhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHH
Confidence 45666666667666665555543 58899999999999999999999999 999999999987 6777777777666
Q ss_pred HhCCC--CCCCcEEEEEeCCCcCCcCCHHHHHhhhccc----------Cc---cCCC-----------cccccccccCcc
Q psy2161 76 LADDA--LTDVPILILGNKIDIFDAASEDEVRHFFGLY----------GL---TTGK-----------EFTSREILQMRP 129 (155)
Q Consensus 76 ~~~~~--~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~----------~~---~~~~-----------~~~~~~~~~~~~ 129 (155)
+.... ..++|+++++||+|+....+...+.+.++.+ .+ .... ..+.+. ....+
T Consensus 100 l~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~-~~~~~ 178 (203)
T cd04105 100 LTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKESLGDKGGKSFEFD-QLEGK 178 (203)
T ss_pred HHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCcceeec-cCcee
Confidence 54321 2579999999999997755555444444321 00 0000 011122 12347
Q ss_pred EEEEEeeeccCC-ChHHHHHHHHh
Q psy2161 130 IELFMCSVLKRQ-GFGNGFRWLAN 152 (155)
Q Consensus 130 ~~~~~~Sa~~~~-~i~~~~~~l~~ 152 (155)
+.+++||++.+. |++...+|+.+
T Consensus 179 v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 179 VEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred EEEEEeEEecCCCChHhHHHHHhh
Confidence 789999999876 69999999875
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=6.2e-18 Score=114.65 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=88.8
Q ss_pred CCCCCceeEEEECCE-EEEEEEcCCCh----hhHHhHHh---hcCCCCEEEEEEECCCC-CchHHHHHHHHHHHhCC-CC
Q psy2161 12 PTLHPTSEELSMGDI-VFTTHDLGGHV----QARRVWRD---YFPAVDAIVFIIDASDR-SRFPESKYELDSLLADD-AL 81 (155)
Q Consensus 12 pT~~~~~~~~~~~~~-~~~~~Dt~G~~----~~~~~~~~---~~~~ad~ii~v~D~~~~-~~~~~~~~~l~~~~~~~-~~ 81 (155)
+|.......+.+++. ++.+|||||.. ..+.+... .++.+|++++|+|++++ .+++....|.+.+.... ..
T Consensus 33 ~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (170)
T cd01898 33 TTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPEL 112 (170)
T ss_pred cccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccc
Confidence 355555566677775 99999999963 11122223 34569999999999998 78888888887775432 12
Q ss_pred CCCcEEEEEeCCCcCCcCCHHH-HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDE-VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+.....+ +...... ....+++++||+++.|++++++++.+.+
T Consensus 113 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 113 LEKPRIVVLNKIDLLDEEELFELLKELLKE----------------LWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred cccccEEEEEchhcCCchhhHHHHHHHHhh----------------CCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 4689999999999865333222 2222221 0245789999999999999999998754
No 138
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.76 E-value=1.6e-17 Score=111.76 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=82.7
Q ss_pred CCCCceeEEEEC-CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 13 TLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 13 T~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
|++.....+.++ +.++++|||||++++......+++++|++++|+|+++... ......+... ... ..+|+++++|
T Consensus 37 t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~-~~~~~~~~~~-~~~--~~~~~ilv~N 112 (164)
T cd04171 37 TIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIM-PQTREHLEIL-ELL--GIKRGLVVLT 112 (164)
T ss_pred eEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCcc-HhHHHHHHHH-HHh--CCCcEEEEEE
Confidence 444445566666 7899999999999998877888999999999999976321 1122222222 111 2359999999
Q ss_pred CCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 92 KIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 92 K~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
|+|+.+... ..++.+.+.. ......+++++||++|.|++++++++..
T Consensus 113 K~Dl~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 113 KADLVDEDWLELVEEEIRELLAG--------------TFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CccccCHHHHHHHHHHHHHHHHh--------------cCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 999865321 1222222221 1113468999999999999999999865
No 139
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.7e-17 Score=123.77 Aligned_cols=127 Identities=19% Similarity=0.263 Sum_probs=93.3
Q ss_pred cCCCCCceeEEEE-CCEEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CC
Q psy2161 11 MPTLHPTSEELSM-GDIVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-AL 81 (155)
Q Consensus 11 ~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~ 81 (155)
-+|..++...+.+ ++.++.+||+||... ....+..+++.++++++|+|+++.++++....|..++.... .+
T Consensus 190 fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L 269 (335)
T PRK12299 190 FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPEL 269 (335)
T ss_pred CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 3677788888888 458899999999632 22334445678999999999998878888888888886542 23
Q ss_pred CCCcEEEEEeCCCcCCcCCH--HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASE--DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+.... ......... .++.++++||+++.|+++++++|.+.+
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~-----------------~~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALELAA-----------------LGGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHHHh-----------------cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999998653211 112222111 235789999999999999999998765
No 140
>PLN00023 GTP-binding protein; Provisional
Probab=99.76 E-value=9.4e-18 Score=123.34 Aligned_cols=111 Identities=21% Similarity=0.339 Sum_probs=87.0
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEEC---------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMG---------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 63 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~---------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~ 63 (155)
+.++.+ ..+.||+|.. .+.+.++ .+.++||||+|++.|+.++..|+++++++|+|||+++..
T Consensus 41 f~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~ 120 (334)
T PLN00023 41 IVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRR 120 (334)
T ss_pred HhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHH
Confidence 455654 4678999985 3555553 278999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCC-----------CCCCcEEEEEeCCCcCCc--------CCHHHHHhhhcccC
Q psy2161 64 RFPESKYELDSLLADDA-----------LTDVPILILGNKIDIFDA--------ASEDEVRHFFGLYG 112 (155)
Q Consensus 64 ~~~~~~~~l~~~~~~~~-----------~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~ 112 (155)
+|+.+..|+.++..... ..++|++||+||+||... +..++..++....+
T Consensus 121 SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~~g 188 (334)
T PLN00023 121 TKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEKQG 188 (334)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHHcC
Confidence 99999999999875421 125899999999998642 13556666665543
No 141
>PRK15494 era GTPase Era; Provisional
Probab=99.73 E-value=1.4e-16 Score=119.29 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=84.1
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChh-h-------HHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQ-A-------RRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDA 80 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~-~-------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~ 80 (155)
+.+|.+.....+..++.++.||||||... + ......++++||++++|+|.++ ++.... .|+..+. .
T Consensus 84 ~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~-~-- 158 (339)
T PRK15494 84 VQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLR-S-- 158 (339)
T ss_pred CCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHH-h--
Confidence 34555555667788889999999999732 1 1122234789999999999765 444443 3444442 2
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.+.|.++|+||+|+.+. ...++.+.+... .....++++||++|.|+++++++|.+.++
T Consensus 159 -~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---------------~~~~~i~~iSAktg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 159 -LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---------------HPDSLLFPISALSGKNIDGLLEYITSKAK 216 (339)
T ss_pred -cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---------------CCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence 24577889999998653 233444443321 12357999999999999999999998764
No 142
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=8.7e-17 Score=119.83 Aligned_cols=129 Identities=19% Similarity=0.256 Sum_probs=92.1
Q ss_pred cCCCCCceeEEEECC-EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCC
Q psy2161 11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADD 79 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~ 79 (155)
.+|..++...+.+++ .++++||+||... ....+...+..++++++|+|+++. ++++....|..++....
T Consensus 189 fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~ 268 (329)
T TIGR02729 189 FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS 268 (329)
T ss_pred CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh
Confidence 356777777788877 9999999999742 222333445689999999999876 56777777776665432
Q ss_pred -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
...++|+++|+||+|+.+.....++.+.+.. ..+..++++||+++.|++++++++.+.+.
T Consensus 269 ~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~----------------~~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 269 PELAEKPRIVVLNKIDLLDEEELAELLKELKK----------------ALGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred hhhccCCEEEEEeCccCCChHHHHHHHHHHHH----------------HcCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 2357899999999998653222233322221 12357899999999999999999998763
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.73 E-value=9.8e-17 Score=105.50 Aligned_cols=130 Identities=22% Similarity=0.294 Sum_probs=95.0
Q ss_pred CcccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
....||. .+....... +..+.+||+||...+...+..+++.+|++++|+|++++.++.....|+..........+
T Consensus 24 ~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (157)
T cd00882 24 EEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGEN 102 (157)
T ss_pred cccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC
Confidence 3455666 654444443 58999999999999888889999999999999999998888777766433333344568
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+|+++++||+|+............... ......+++++|+.++.|++++++|+.+
T Consensus 103 ~~~ivv~nk~D~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 103 IPIILVGNKIDLPEERVVSEEELAEQL--------------AKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred CcEEEEEeccccccccchHHHHHHHHH--------------HhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 999999999998764333222100000 1123568999999999999999999864
No 144
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.73 E-value=1.5e-16 Score=111.22 Aligned_cols=123 Identities=20% Similarity=0.270 Sum_probs=87.4
Q ss_pred ccCCCCCceeEEEECC-EEEEEEEcCCCh---------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSMGD-IVFTTHDLGGHV---------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~-~~~~~~Dt~G~~---------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
+.||..+....+.+++ ..+.+|||||.. .+...+ ..+..+|++++|+|++++.++.....|...+. ..
T Consensus 72 ~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~-~~ 149 (204)
T cd01878 72 LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLK-EL 149 (204)
T ss_pred cceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHH-Hc
Confidence 4567777777777766 499999999972 233333 23678999999999998887776655554442 22
Q ss_pred CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...++|+++|+||+|+.+.... ..... ....+++++||++|.|+.+++++|.+.|
T Consensus 150 ~~~~~~viiV~NK~Dl~~~~~~---~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 150 GAEDIPMILVLNKIDLLDDEEL---EERLE-----------------AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CcCCCCEEEEEEccccCChHHH---HHHhh-----------------cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 3356899999999998653211 11111 1345799999999999999999998764
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.73 E-value=1.2e-16 Score=108.11 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=85.1
Q ss_pred CCCCceeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 13 TLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 13 T~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
|.......+..+ +..+.+|||||+..+...+..+++.+|++++|+|+++..... ....+..+.. .++|+++|
T Consensus 34 t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~-~~~~~~~~~~----~~~p~ivv 108 (168)
T cd01887 34 TQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQ-TIEAIKLAKA----ANVPFIVA 108 (168)
T ss_pred EEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHH-HHHHHHHHHH----cCCCEEEE
Confidence 433444555554 689999999999999999999999999999999998753222 2222222221 36899999
Q ss_pred EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+||+|+.+.. ...+...+..... .........+.++++||++|.|+.++++++.+.
T Consensus 109 ~NK~Dl~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 109 LNKIDKPNAN-PERVKNELSELGL-------QGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred EEceeccccc-HHHHHHHHHHhhc-------cccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 9999986422 2222222211000 000001234679999999999999999999864
No 146
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.73 E-value=7.5e-17 Score=109.76 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=89.2
Q ss_pred CCCCCceeEEEEC-CEEEEEEEcCCChh----hHH---hHHhhcCCCCEEEEEEECCCC------CchHHHHHHHHHHHh
Q psy2161 12 PTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARR---VWRDYFPAVDAIVFIIDASDR------SRFPESKYELDSLLA 77 (155)
Q Consensus 12 pT~~~~~~~~~~~-~~~~~~~Dt~G~~~----~~~---~~~~~~~~ad~ii~v~D~~~~------~~~~~~~~~l~~~~~ 77 (155)
+|..+....+.++ +.++.+|||||... .+. .+..+++++|++++|+|++++ .++.....|...+..
T Consensus 29 ~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T cd01881 29 TTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKL 108 (176)
T ss_pred eeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHH
Confidence 5566666677788 89999999999632 111 233457789999999999987 467777777777654
Q ss_pred CCC------CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 78 DDA------LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 78 ~~~------~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
... ..++|+++|+||+|+........... ... .......++++||+++.|++++++++.
T Consensus 109 ~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~-~~~--------------~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 109 YDLETILGLLTAKPVIYVLNKIDLDDAEELEEELV-REL--------------ALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHH-HHH--------------hcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 332 24689999999999865322222110 000 112345799999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 174 ~~~ 176 (176)
T cd01881 174 ELL 176 (176)
T ss_pred hhC
Confidence 754
No 147
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.72 E-value=5.9e-17 Score=121.30 Aligned_cols=145 Identities=20% Similarity=0.316 Sum_probs=111.3
Q ss_pred CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHh
Q psy2161 8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLA 77 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~ 77 (155)
..+.||.|++...+.+++..+.+||.||++..+..|.+|+.++++++||+|+++ .+.+.+....++.+++
T Consensus 166 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 166 RSRVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred heeCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 456799999999999999999999999999999999999999999999999986 3567888889999998
Q ss_pred CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc----cCccEEEEEeeeccCCChHH
Q psy2161 78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL----QMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~~~Sa~~~~~i~~ 145 (155)
.....+.|+++++||.|+.. .+....+...++.+.+... .... +... ..+.+..+.+||.+..++..
T Consensus 246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~-~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPND-YEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCC-HHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHH
Confidence 88888999999999999764 2222234444444433210 0000 1111 22567888999999999999
Q ss_pred HHHHHHhh
Q psy2161 146 GFRWLANY 153 (155)
Q Consensus 146 ~~~~l~~~ 153 (155)
+|..+.+.
T Consensus 325 v~~~v~~~ 332 (342)
T smart00275 325 VFDAVKDI 332 (342)
T ss_pred HHHHHHHH
Confidence 99877654
No 148
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.72 E-value=2e-17 Score=122.80 Aligned_cols=146 Identities=19% Similarity=0.305 Sum_probs=111.4
Q ss_pred CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC----------CchHHHHHHHHHHHh
Q psy2161 8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR----------SRFPESKYELDSLLA 77 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~----------~~~~~~~~~l~~~~~ 77 (155)
....||.|++...+.+++..+.+||+||++..+..|.+|+.++++++||+|+++. +.+.+....++.+++
T Consensus 143 ~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~ 222 (317)
T cd00066 143 RARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN 222 (317)
T ss_pred eeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh
Confidence 3467999999999999999999999999999999999999999999999999873 567788888999998
Q ss_pred CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc---cCccEEEEEeeeccCCChHHH
Q psy2161 78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL---QMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
+....+.|+++++||.|+.. ++....+...++.+.+........ +..+ ..+.+.++.++|.+..++..+
T Consensus 223 ~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~v 302 (317)
T cd00066 223 SRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFV 302 (317)
T ss_pred CccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHH
Confidence 88888999999999999754 222223344444443311111110 1111 235778889999999999999
Q ss_pred HHHHHhh
Q psy2161 147 FRWLANY 153 (155)
Q Consensus 147 ~~~l~~~ 153 (155)
|..+.+.
T Consensus 303 f~~v~~~ 309 (317)
T cd00066 303 FDAVKDI 309 (317)
T ss_pred HHHHHHH
Confidence 9887654
No 149
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.72 E-value=1.6e-16 Score=106.34 Aligned_cols=118 Identities=22% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHH------hHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
|.......+.+++..+.+|||||+..+.. ++..++. ++|++++|+|++++... ..++..+.. .++
T Consensus 30 t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~ 102 (158)
T cd01879 30 TVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGL 102 (158)
T ss_pred ccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCC
Confidence 44455677888889999999999876543 4566675 99999999999875433 234433322 268
Q ss_pred cEEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+... .......... .+.+++++||++|.|+.++++++.+.+
T Consensus 103 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 103 PVVVALNMIDEAEKRGIKIDLDKLSEL-----------------LGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred CEEEEEehhhhcccccchhhHHHHHHh-----------------hCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999865321 1111111111 235799999999999999999998753
No 150
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1e-15 Score=105.20 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=93.0
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|.......+...+..+.+|||||...+...+..+++.+|++++|+|++++..... ..++..... .++|+++|+||
T Consensus 49 ~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK 123 (189)
T cd00881 49 TIKSGVATFEWPDRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINK 123 (189)
T ss_pred CeecceEEEeeCCEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEEC
Confidence 3334456667778999999999999999999999999999999999987654432 233333322 47899999999
Q ss_pred CCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 93 IDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 93 ~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+|+..... ..++.+.+...+.+..+ ...........++++||++|.|++++++++.+.++
T Consensus 124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 124 IDRVGEEDLEEVLREIKELLGLIGFISTK---EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CCCcchhcHHHHHHHHHHHHccccccchh---hhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 99865222 22333333332110000 00011234678999999999999999999998764
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.72 E-value=2.9e-16 Score=117.96 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=88.0
Q ss_pred ccCCCCCceeEEEE-CCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSM-GDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~-~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
+.+|..+....+.+ ++..+.+|||+|. +.|+..+. .+++||++++|+|++++.+++....|...+ ...
T Consensus 220 ~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L-~~l 297 (351)
T TIGR03156 220 LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVL-EEL 297 (351)
T ss_pred CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHH-HHh
Confidence 45788888888888 5689999999997 33444443 478999999999999988776654443333 322
Q ss_pred CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...++|+++|+||+|+.+. ..+...... ...++.+||++|.|++++++++.+.+
T Consensus 298 ~~~~~piIlV~NK~Dl~~~---~~v~~~~~~------------------~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 298 GAEDIPQLLVYNKIDLLDE---PRIERLEEG------------------YPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred ccCCCCEEEEEEeecCCCh---HhHHHHHhC------------------CCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 3347899999999998542 222111111 12479999999999999999998753
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.71 E-value=5e-16 Score=107.89 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=77.1
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
...+..+++++++|||||+..|...+..+++++|++++|+|+++. .+.....++..... .++|+++|+||+|+.+
T Consensus 57 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 57 NTAVTYKDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPD 131 (194)
T ss_pred eeEEEECCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 345667789999999999999999999999999999999999864 23333344444432 3689999999999864
Q ss_pred cCC---HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 98 AAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 98 ~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
... ..++...+...+ ......+++++++||++|.|+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 132 ARPEEVVDEVFDLFIELG----------ATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred CCHHHHHHHHHHHHHHhC----------CccccCccCEEEeehhcccccc
Confidence 322 223333321100 0011235689999999997753
No 153
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.71 E-value=6.9e-17 Score=106.70 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=69.4
Q ss_pred EEEEcCCCh-----hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHH
Q psy2161 29 TTHDLGGHV-----QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASED 102 (155)
Q Consensus 29 ~~~Dt~G~~-----~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~ 102 (155)
.+|||||+. .++.+.. .+++||++++|+|++++.++.. ..|.... ..|+++|+||+|+.+ ....+
T Consensus 38 ~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 38 GAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCCcccCHH
Confidence 689999972 3444444 5899999999999999888754 2333221 249999999999865 23333
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+..+.+... ...+++++||++|.|++++|+++.
T Consensus 109 ~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETA----------------GAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHc----------------CCCcEEEEecCCCCCHHHHHHHHh
Confidence 333333321 112689999999999999999985
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.71 E-value=3.7e-16 Score=124.36 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=82.5
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH---H
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---D 102 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~ 102 (155)
+++++|||||+..|...+..+++.||++++|+|+++..+......|.... . .+.|+++|+||+|+.+.... .
T Consensus 70 ~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~ 144 (595)
T TIGR01393 70 YVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKK 144 (595)
T ss_pred EEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHH
Confidence 89999999999999999999999999999999999876666555554333 1 36799999999998643211 2
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
++.+.++. ....++++||++|.|++++++++.+.++
T Consensus 145 el~~~lg~-----------------~~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 145 EIEEVIGL-----------------DASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred HHHHHhCC-----------------CcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 22222221 1235899999999999999999988764
No 155
>KOG4252|consensus
Probab=99.70 E-value=2e-18 Score=115.29 Aligned_cols=127 Identities=17% Similarity=0.241 Sum_probs=107.1
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..|..|+|+. .+.+.+.+ +++.+|||+|++.|......||++|.+.++||..++..+|+....|..++.+. ...
T Consensus 47 kdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e--~~~ 124 (246)
T KOG4252|consen 47 KDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKE--TER 124 (246)
T ss_pred cccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHH--hcc
Confidence 4677888875 55665554 89999999999999999999999999999999999999999999999999754 468
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+|.++|-||+|+.+ .+...++...... ....++.+|++..-|+..+|.+|++.
T Consensus 125 IPtV~vqNKIDlveds~~~~~evE~lak~-----------------l~~RlyRtSvked~NV~~vF~YLaeK 179 (246)
T KOG4252|consen 125 IPTVFVQNKIDLVEDSQMDKGEVEGLAKK-----------------LHKRLYRTSVKEDFNVMHVFAYLAEK 179 (246)
T ss_pred CCeEEeeccchhhHhhhcchHHHHHHHHH-----------------hhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999976 4555566555544 34568899999999999999999864
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.70 E-value=3.6e-16 Score=109.46 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=78.2
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---- 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---- 101 (155)
.++.||||||++.+...+...++.+|++++|+|++++.........+..+. .. ...|+++|+||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~--~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IM--GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-Hc--CCCcEEEEEEchhccCHHHHHHHH
Confidence 789999999999998888888999999999999986421111122222221 11 23589999999998642111
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+.+.+.+.. .....+.++++||++|.|++++++++.+.++
T Consensus 160 ~~i~~~~~~--------------~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 160 EQIKKFVKG--------------TIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHhc--------------cccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 222222221 1123467999999999999999999998764
No 157
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.70 E-value=5.4e-16 Score=107.57 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=84.2
Q ss_pred CCCCCceeEEEEC--------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 12 PTLHPTSEELSMG--------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 12 pT~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+|.+.....+.+. ++.+++|||||+..+........+.+|++++|+|+++.........+. +..
T Consensus 40 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~ 117 (192)
T cd01889 40 ITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGE 117 (192)
T ss_pred CeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHH
Confidence 5666655555554 689999999999876554445567889999999998754433322222 111
Q ss_pred CCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 78 DDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
. .++|+++++||+|+..... .+++.+.+... .......+++++++||++|.|++++++++.++
T Consensus 118 ~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 118 I---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT----------LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred H---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH----------HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 1 2579999999999864222 22222222110 00011245789999999999999999999987
Q ss_pred cC
Q psy2161 154 ID 155 (155)
Q Consensus 154 i~ 155 (155)
++
T Consensus 185 ~~ 186 (192)
T cd01889 185 IV 186 (192)
T ss_pred cc
Confidence 64
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=6.4e-16 Score=120.48 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=86.3
Q ss_pred CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCCh--------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHH
Q psy2161 2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVDAIVFIIDASDRSRFPESK 69 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~--------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~ 69 (155)
|.++....+.++.|.+ ...+.+++.++.+|||||.. .+...+..+++.||++++|+|+++..++.. .
T Consensus 58 l~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~ 136 (472)
T PRK03003 58 ILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-E 136 (472)
T ss_pred HhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-H
Confidence 4445444445555553 44556788899999999965 245556778999999999999998755532 2
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161 70 YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW 149 (155)
Q Consensus 70 ~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 149 (155)
.+...+ .. .++|+++|+||+|+..... +....... . .. ..+++||++|.|+++++++
T Consensus 137 ~i~~~l-~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~---------------g-~~-~~~~iSA~~g~gi~eL~~~ 193 (472)
T PRK03003 137 AVARVL-RR---SGKPVILAANKVDDERGEA--DAAALWSL---------------G-LG-EPHPVSALHGRGVGDLLDA 193 (472)
T ss_pred HHHHHH-HH---cCCCEEEEEECccCCccch--hhHHHHhc---------------C-CC-CeEEEEcCCCCCcHHHHHH
Confidence 233323 21 3689999999999864211 11111111 0 01 2468999999999999999
Q ss_pred HHhhc
Q psy2161 150 LANYI 154 (155)
Q Consensus 150 l~~~i 154 (155)
+.+.+
T Consensus 194 i~~~l 198 (472)
T PRK03003 194 VLAAL 198 (472)
T ss_pred HHhhc
Confidence 98765
No 159
>KOG0096|consensus
Probab=99.69 E-value=3.1e-17 Score=110.41 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=108.2
Q ss_pred CCCCCCC-cccCCCCCceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRTA-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~~-~~~pT~~~~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
...|+++ .+.||+|+....+.+. .++|..|||+|++.+-.....||-++.+.+++||++..-++..+..|..++.
T Consensus 30 ~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~ 109 (216)
T KOG0096|consen 30 HLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLV 109 (216)
T ss_pred hhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHH
Confidence 3456665 5889999987777653 2999999999999999999999999999999999999888999999999887
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... .++||++.+||.|.........-..+ ...+++.++++||+++.|.+.-|.||++.+
T Consensus 110 rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~-----------------~rkknl~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 110 RVR--ENIPIVLCGNKVDIKARKVKAKPVSF-----------------HRKKNLQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred HHh--cCCCeeeeccceecccccccccccee-----------------eecccceeEEeecccccccccchHHHhhhh
Confidence 543 57999999999997653222121222 233678999999999999999999999864
No 160
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=102.53 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=100.3
Q ss_pred CCCCCceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 12 PTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
.|+......+.+++ ..+.+++||||++|+-+|..+.+++.++++++|.+.+..+ +....+..+. +.. .+|+++++
T Consensus 53 tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~-~~~--~ip~vVa~ 128 (187)
T COG2229 53 TTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT-SRN--PIPVVVAI 128 (187)
T ss_pred eeEeecccceEEcCcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHh-hcc--CCCEEEEe
Confidence 45555666666665 9999999999999999999999999999999999999888 4445555543 221 28999999
Q ss_pred eCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 91 NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 91 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
||.|+.+..+.+++.+.+.... ...+.++.+|.++++..+.++.+..
T Consensus 129 NK~DL~~a~ppe~i~e~l~~~~---------------~~~~vi~~~a~e~~~~~~~L~~ll~ 175 (187)
T COG2229 129 NKQDLFDALPPEKIREALKLEL---------------LSVPVIEIDATEGEGARDQLDVLLL 175 (187)
T ss_pred eccccCCCCCHHHHHHHHHhcc---------------CCCceeeeecccchhHHHHHHHHHh
Confidence 9999999999999999887620 3568999999999999998887754
No 161
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.69 E-value=1.3e-15 Score=121.27 Aligned_cols=109 Identities=20% Similarity=0.256 Sum_probs=81.9
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH---
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE--- 101 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~--- 101 (155)
++++++|||||+..|...+..+++.+|++++|+|+++.........|.... . .+.|+++|+||+|+.+....
T Consensus 73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~~~~v~ 147 (600)
T PRK05433 73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAADPERVK 147 (600)
T ss_pred cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCcccHHHHH
Confidence 489999999999999999999999999999999998865554444443322 1 36899999999998643221
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.++.+.++. ....++.+||++|.|++++++++.+.++
T Consensus 148 ~ei~~~lg~-----------------~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 148 QEIEDVIGI-----------------DASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred HHHHHHhCC-----------------CcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 222222221 1235899999999999999999988764
No 162
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.69 E-value=1.8e-15 Score=100.46 Aligned_cols=127 Identities=20% Similarity=0.289 Sum_probs=94.4
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC-CchHHHH-HHHHHHHhCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR-SRFPESK-YELDSLLADDAL 81 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~-~~~~~~~-~~l~~~~~~~~~ 81 (155)
..+.||.+.. ...+.+++ +.+.+||+||+..+...+..+++.++++++++|.... .++.... .|...+......
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~ 107 (161)
T TIGR00231 28 TEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES 107 (161)
T ss_pred CcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc
Confidence 4556677665 34467777 8899999999999999999999999999999999876 6665554 566555443322
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+.|+++++||+|+............+... ....++++||++|.|+.+++++|.
T Consensus 108 -~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 -NVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred -CCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEEeecCCCCCHHHHHHHhh
Confidence 78999999999986533233333333331 234699999999999999999974
No 163
>KOG3883|consensus
Probab=99.68 E-value=1.5e-15 Score=99.10 Aligned_cols=130 Identities=19% Similarity=0.301 Sum_probs=104.7
Q ss_pred CcccCCCCCc-eeEEEECC---EEEEEEEcCCChhh-HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD---IVFTTHDLGGHVQA-RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~---~~~~~~Dt~G~~~~-~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
.++.||++.. +..++.+. .++.++||+|-+.+ ..+-++|++-+|++++||+..++++|+.+..+-.+|-++....
T Consensus 38 ~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKK 117 (198)
T KOG3883|consen 38 TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKK 117 (198)
T ss_pred CccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccc
Confidence 4678999875 78888764 78999999998877 7788999999999999999999999988765555665566667
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+|+++++||+|+.+ .+..+....+... ..+..++++|.+...+-|.|.+++..+
T Consensus 118 EvpiVVLaN~rdr~~p~~vd~d~A~~Wa~r-----------------Ekvkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 118 EVPIVVLANKRDRAEPREVDMDVAQIWAKR-----------------EKVKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred cccEEEEechhhcccchhcCHHHHHHHHhh-----------------hheeEEEEEeccchhhhhHHHHHHHhc
Confidence 899999999999965 3444444444443 567899999999999999999988653
No 164
>KOG0090|consensus
Probab=99.68 E-value=4.4e-15 Score=102.01 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=116.9
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcC---CCCEEEEEEECCC-CCchHHHHHHHHHHH
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP---AVDAIVFIIDASD-RSRFPESKYELDSLL 76 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~---~ad~ii~v~D~~~-~~~~~~~~~~l~~~~ 76 (155)
+|..|....++|.+.++...+.++.-..++.|.||+.+.+.....+++ .+.+++||+|+.- +.....+..++-.++
T Consensus 57 qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil 136 (238)
T KOG0090|consen 57 QLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDIL 136 (238)
T ss_pred ehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHH
Confidence 466778888999999999999999888999999999999998888888 7999999999853 445566666776666
Q ss_pred hCC--CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCc------------cC----------CCcc-cccccccCccEE
Q psy2161 77 ADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL------------TT----------GKEF-TSREILQMRPIE 131 (155)
Q Consensus 77 ~~~--~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~------------~~----------~~~~-~~~~~~~~~~~~ 131 (155)
... ..+.+|+++.+||.|+..+.+.+.|.+.++.+-. +. .++. +.+..+....+.
T Consensus 137 ~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~ 216 (238)
T KOG0090|consen 137 LDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVT 216 (238)
T ss_pred HhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeE
Confidence 544 3456899999999999877777777666653211 00 0111 233344556788
Q ss_pred EEEeeeccCCChHHHHHHHHhhc
Q psy2161 132 LFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 132 ~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.++|+++| +++++.+|+.+.+
T Consensus 217 F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 217 FAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred EeecccCcC-ChHHHHHHHHHhC
Confidence 999999999 9999999998754
No 165
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.67 E-value=1.9e-15 Score=100.83 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=79.5
Q ss_pred CceeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
.....+.+++..+.+|||||...+.. .+..+++++|++++|+|++++.+... .++...+.. .+.|++
T Consensus 35 ~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~--~~~~~~~~~---~~~pii 109 (157)
T cd01894 35 RIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPAD--EEIAKYLRK---SKKPVI 109 (157)
T ss_pred ceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccH--HHHHHHHHh---cCCCEE
Confidence 34566777889999999999876433 44567889999999999976544432 223333322 258999
Q ss_pred EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+||+|+.+.... ...+.. .+. .++++||++|.|++++++++.+.+
T Consensus 110 iv~nK~D~~~~~~~---~~~~~~-----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 110 LVVNKVDNIKEEDE---AAEFYS-----------------LGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEECcccCChHHH---HHHHHh-----------------cCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 99999998653211 111111 112 578999999999999999998764
No 166
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.67 E-value=5e-15 Score=102.45 Aligned_cols=126 Identities=18% Similarity=0.252 Sum_probs=88.6
Q ss_pred CCCCceeEEE--ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 13 TLHPTSEELS--MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 13 T~~~~~~~~~--~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
|+......+. .++..++++||||+..|.......++.+|++|+|+|+.+.-.. .....+..+.. .++|+++++
T Consensus 55 ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~----~~~p~ivvl 129 (188)
T PF00009_consen 55 TIDLSFISFEKNENNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE----LGIPIIVVL 129 (188)
T ss_dssp SSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH----TT-SEEEEE
T ss_pred ccccccccccccccccceeecccccccceeecccceecccccceeeeeccccccc-ccccccccccc----cccceEEee
Confidence 4445566777 7789999999999999999888889999999999999865332 22333333322 268899999
Q ss_pred eCCCcCCcC---CHHHHHhhh-cccCccCCCcccccccccC-ccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 91 NKIDIFDAA---SEDEVRHFF-GLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 91 nK~Dl~~~~---~~~~i~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
||+|+.... ..+++...+ ...+ ... ..++++++||++|.|++++++.+.+.+|
T Consensus 130 NK~D~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 130 NKMDLIEKELEEIIEEIKEKLLKEYG------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ETCTSSHHHHHHHHHHHHHHHHHHTT------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred eeccchhhhHHHHHHHHHHHhccccc------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 999987311 112222111 1100 111 3589999999999999999999999876
No 167
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.66 E-value=1.6e-15 Score=117.64 Aligned_cols=127 Identities=24% Similarity=0.290 Sum_probs=87.0
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChh----hHHh---HHhhcCCCCEEEEEEECCCC----CchHHHHHHHHHHHhCC
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQ----ARRV---WRDYFPAVDAIVFIIDASDR----SRFPESKYELDSLLADD 79 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~----~~~~---~~~~~~~ad~ii~v~D~~~~----~~~~~~~~~l~~~~~~~ 79 (155)
.+|+.++...+.+++.+|++||+||... ...+ ....+..|+++++|+|+++. +.++....+..++....
T Consensus 191 fTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~ 270 (500)
T PRK12296 191 FTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYA 270 (500)
T ss_pred cccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhh
Confidence 4788888888999999999999999521 1111 22346789999999999753 34444444444443222
Q ss_pred ----------CCCCCcEEEEEeCCCcCCcCCHH-HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161 80 ----------ALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 80 ----------~~~~~piilv~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 148 (155)
.+.++|+++|+||+|+.+..... .+...+.. ..+.++++||+++.|+++++.
T Consensus 271 ~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-----------------~g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 271 PALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-----------------RGWPVFEVSAASREGLRELSF 333 (500)
T ss_pred hcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHH
Confidence 23578999999999986432211 12222221 346899999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
+|.+.+
T Consensus 334 ~L~ell 339 (500)
T PRK12296 334 ALAELV 339 (500)
T ss_pred HHHHHH
Confidence 998764
No 168
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.66 E-value=2.8e-15 Score=116.90 Aligned_cols=120 Identities=14% Similarity=0.104 Sum_probs=81.4
Q ss_pred eeEEEECCEEEEEEEcCCC----------hhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 18 SEELSMGDIVFTTHDLGGH----------VQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~----------~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
...+.+++..+.+|||||. +.+... ...++++||++++|+|+++..++.... ++..+.. .++|+
T Consensus 251 ~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~pi 325 (472)
T PRK03003 251 DSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRAL 325 (472)
T ss_pred eEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCE
Confidence 5667788999999999995 223332 234678999999999999887776653 4444432 36899
Q ss_pred EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+||+|+.+.............. .......+++++||++|.|++++|+.+.+.+
T Consensus 326 IiV~NK~Dl~~~~~~~~~~~~i~~~------------l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 326 VLAFNKWDLVDEDRRYYLEREIDRE------------LAQVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred EEEEECcccCChhHHHHHHHHHHHh------------cccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999996422112221111110 0011234689999999999999999987643
No 169
>PRK04213 GTP-binding protein; Provisional
Probab=99.65 E-value=2.5e-15 Score=104.81 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=77.0
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcC----CCCEEEEEEECCCCCch-HH------
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFP----AVDAIVFIIDASDRSRF-PE------ 67 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~----~ad~ii~v~D~~~~~~~-~~------ 67 (155)
+.|+.......+.++ .+++||||| ++.++..+..+++ .++++++|+|.++...+ +.
T Consensus 38 ~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~ 115 (201)
T PRK04213 38 KRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGE 115 (201)
T ss_pred CCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCC
Confidence 445444444444444 689999999 5677777777764 45788899988653221 00
Q ss_pred --HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCCh
Q psy2161 68 --SKYELDSLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF 143 (155)
Q Consensus 68 --~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 143 (155)
....+...+.. .++|+++|+||+|+.+.. ...++.+.++... ........++++||++| |+
T Consensus 116 ~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~SA~~g-gi 180 (201)
T PRK04213 116 IPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP-----------PWRQWQDIIAPISAKKG-GI 180 (201)
T ss_pred cHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc-----------cccccCCcEEEEecccC-CH
Confidence 00111222221 368999999999986532 1222333222200 00000125899999999 99
Q ss_pred HHHHHHHHhhc
Q psy2161 144 GNGFRWLANYI 154 (155)
Q Consensus 144 ~~~~~~l~~~i 154 (155)
++++++|.+.+
T Consensus 181 ~~l~~~l~~~~ 191 (201)
T PRK04213 181 EELKEAIRKRL 191 (201)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 170
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.65 E-value=3.7e-15 Score=105.12 Aligned_cols=150 Identities=22% Similarity=0.267 Sum_probs=97.3
Q ss_pred CCCCCC-CcccCCCCCce--eEEEEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPTS--EELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~ 75 (155)
|..+.+ ..+.||++... ...... .+++.+|||+|+++++..|..|+.+++++++|+|.++..++ +....|+..+
T Consensus 25 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l 104 (219)
T COG1100 25 LVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEEL 104 (219)
T ss_pred HhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHH
Confidence 344554 45778887652 222223 48899999999999999999999999999999999985444 5556787777
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhc-ccCccCCCcccccccccCccEEEEEeeec--cCCChHHHHHHHH
Q psy2161 76 LADDALTDVPILILGNKIDIFDAASE-DEVRHFFG-LYGLTTGKEFTSREILQMRPIELFMCSVL--KRQGFGNGFRWLA 151 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~ 151 (155)
.... ....|+++++||+|+...... ..+...+. .... ................+++||++ ++.++.++|..+.
T Consensus 105 ~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~ 181 (219)
T COG1100 105 RELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVL--LVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELL 181 (219)
T ss_pred HHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcch--hhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHH
Confidence 5433 246899999999999763221 11111110 0000 00000000011123348999999 9999999998877
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 182 ~~~ 184 (219)
T COG1100 182 RKL 184 (219)
T ss_pred HHH
Confidence 643
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=5.6e-15 Score=113.08 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=87.2
Q ss_pred cCCCCCceeEEEEC-CEEEEEEEcCCChh----hHHhHH---hhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCC
Q psy2161 11 MPTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARRVWR---DYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADD 79 (155)
Q Consensus 11 ~pT~~~~~~~~~~~-~~~~~~~Dt~G~~~----~~~~~~---~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~ 79 (155)
-+|..++...+.++ +.++.+||+||... ...+.. ..+..++++++|+|+++. +.++....|..++....
T Consensus 190 fTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~ 269 (424)
T PRK12297 190 FTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN 269 (424)
T ss_pred cceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc
Confidence 35666777777777 68999999999632 222333 335579999999999864 56666666666665432
Q ss_pred -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.++|+++|+||+|+.+. ...+...... + ...++++||+++.|++++++++.+.+
T Consensus 270 ~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~--------------l---~~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 270 PRLLERPQIVVANKMDLPEA--EENLEEFKEK--------------L---GPKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred hhccCCcEEEEEeCCCCcCC--HHHHHHHHHH--------------h---CCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 2357899999999998432 2222222222 1 14789999999999999999998754
No 172
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.64 E-value=2.9e-15 Score=116.02 Aligned_cols=112 Identities=16% Similarity=0.198 Sum_probs=82.4
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
|..+....+.+++..+.+|||||.+.+.. ....+++++|++++|+|++++.+++....|.. ..++
T Consensus 250 T~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~ 322 (449)
T PRK05291 250 TRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-------LKDK 322 (449)
T ss_pred ccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-------cCCC
Confidence 44445677888999999999999865332 13346889999999999998877765433322 3468
Q ss_pred cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+..... .. ....++++||++|.|++++++++.+.+
T Consensus 323 piiiV~NK~DL~~~~~~~------~~-----------------~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 323 PVIVVLNKADLTGEIDLE------EE-----------------NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred CcEEEEEhhhccccchhh------hc-----------------cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 999999999986422111 11 124689999999999999999998754
No 173
>KOG0082|consensus
Probab=99.64 E-value=2e-15 Score=111.87 Aligned_cols=145 Identities=21% Similarity=0.317 Sum_probs=114.0
Q ss_pred CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHh
Q psy2161 8 AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLA 77 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~ 77 (155)
...+||.|+....+.+++..+.++|+|||++-+..|.++|.+++++|||+++++ .+.+.+...+++.+.+
T Consensus 177 ~~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n 256 (354)
T KOG0082|consen 177 RSRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN 256 (354)
T ss_pred hhccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999999999999999875 3445667789999999
Q ss_pred CCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------cccc---cCccEEEEEeeeccCCChHHH
Q psy2161 78 DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------REIL---QMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
+....+.+++|++||.|+.. .+....+...++.+.+... .... +.++ ..+.+.++.++|.+..+++.+
T Consensus 257 ~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~-~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~v 335 (354)
T KOG0082|consen 257 NKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNT-YEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFV 335 (354)
T ss_pred CcccccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCC-hHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHH
Confidence 99999999999999999876 4444445555555544311 1111 1111 125678889999999999999
Q ss_pred HHHHHhh
Q psy2161 147 FRWLANY 153 (155)
Q Consensus 147 ~~~l~~~ 153 (155)
|+.+.+.
T Consensus 336 f~av~d~ 342 (354)
T KOG0082|consen 336 FDAVTDT 342 (354)
T ss_pred HHHHHHH
Confidence 9988764
No 174
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.63 E-value=1.1e-14 Score=106.08 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=75.8
Q ss_pred EEECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 21 LSMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 21 ~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
...++.++.+|||||.... ......+++++|++++|+|+++..+.. ..++..+ .. .+.|+++|+||
T Consensus 43 ~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l-~~---~~~p~ilV~NK 116 (270)
T TIGR00436 43 HTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKL-QN---LKRPVVLTRNK 116 (270)
T ss_pred EEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHH-Hh---cCCCEEEEEEC
Confidence 3445688999999996431 223456788999999999998866554 2333333 22 36899999999
Q ss_pred CCcCCcCCH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 93 IDIFDAASE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 93 ~Dl~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+|+.+.... ..+...... . ....++++||++|.|++++++++.+.++
T Consensus 117 ~Dl~~~~~~~~~~~~~~~~---------------~-~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 117 LDNKFKDKLLPLIDKYAIL---------------E-DFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred eeCCCHHHHHHHHHHHHhh---------------c-CCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 998532111 111111111 0 1126899999999999999999988764
No 175
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=1.8e-14 Score=111.27 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=78.9
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...+.+++..+++|||||...+.. ....+++++|++++|+|++++.+++.. |+..+. ..++|+++|
T Consensus 243 ~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV 316 (442)
T TIGR00450 243 EGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILV 316 (442)
T ss_pred EEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEE
Confidence 567788999999999999865432 234678999999999999988777654 665553 136899999
Q ss_pred EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+||+|+... ... ..... .+..++.+||++ .|+.++++.+.+.+
T Consensus 317 ~NK~Dl~~~-~~~---~~~~~-----------------~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 317 LNKIDLKIN-SLE---FFVSS-----------------KVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred EECccCCCc-chh---hhhhh-----------------cCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 999998643 111 11111 123578999998 68889888877643
No 176
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.61 E-value=1.7e-14 Score=114.55 Aligned_cols=121 Identities=21% Similarity=0.190 Sum_probs=83.0
Q ss_pred eeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 18 SEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
...+.+++ .+++||||||+..|..++..+++.+|++++|+|+++...-+. ...+... ...++|+++++||+|+.
T Consensus 126 ~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT-~e~i~~~----~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 126 AYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQT-IEAISHA----KAANVPIIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhH-HHHHHHH----HHcCCCEEEEEECcccc
Confidence 45566655 499999999999999999999999999999999876422211 1222222 12368999999999986
Q ss_pred CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 97 DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 97 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+. ..+.+...+...++.. ........++++||++|.|++++++++..
T Consensus 201 ~~-~~e~v~~~L~~~g~~~--------~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 201 EA-NPDRVKQELSEYGLVP--------EDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred cC-CHHHHHHHHHHhhhhH--------HhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 52 3444444443211000 00012357999999999999999999853
No 177
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.61 E-value=2.3e-14 Score=95.56 Aligned_cols=108 Identities=20% Similarity=0.219 Sum_probs=78.9
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH--------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~--------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...+..++.++.+|||||...+.. ....++..+|++++|+|++++.+......+.. ..++|+++|
T Consensus 41 ~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v 113 (157)
T cd04164 41 EESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVV 113 (157)
T ss_pred EEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEE
Confidence 456667789999999999644321 23346779999999999998776655433322 347899999
Q ss_pred EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+||+|+.+.... . ......+++++||+++.|+++++++|.+.+
T Consensus 114 ~nK~D~~~~~~~--------~--------------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 114 LNKSDLLPDSEL--------L--------------SLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEchhcCCcccc--------c--------------cccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 999998653221 1 111245799999999999999999998765
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.61 E-value=1.9e-14 Score=110.55 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=82.6
Q ss_pred cCCCCCceeEEEECC-EEEEEEEcCCChh--hHHhH------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ--ARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~--~~~~~------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
-+|..+....+.+.+ ..+.+|||+|..+ ....+ ...++.||++++|+|++++.+++....|.. ++.....
T Consensus 229 ~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~-iL~el~~ 307 (426)
T PRK11058 229 FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNT-VLEEIDA 307 (426)
T ss_pred CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHH-HHHHhcc
Confidence 467777777888776 4899999999733 12222 334689999999999999877766533322 2222223
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+... ..+.. ... +.+ ++.+||++|.|++++++++.+.+
T Consensus 308 ~~~pvIiV~NKiDL~~~~~-~~~~~-~~~------------------~~~~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 308 HEIPTLLVMNKIDMLDDFE-PRIDR-DEE------------------NKPIRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCEEEEEEcccCCCchh-HHHHH-Hhc------------------CCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 4689999999999864211 11111 000 112 57899999999999999998754
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.61 E-value=1e-14 Score=112.50 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=80.7
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH-----------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR-----------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~-----------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
...+.+++..+.+|||||..+... ....+++.||++++|+|++++.+.... .++..+.. .++|+
T Consensus 212 ~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~i 286 (429)
T TIGR03594 212 DIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKAL 286 (429)
T ss_pred eEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcE
Confidence 456677888999999999644321 123468899999999999987665543 33333332 36899
Q ss_pred EEEEeCCCcC-CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 87 LILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 87 ilv~nK~Dl~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++|+||+|+. +.....++...+... -......+++++||++|.|++++++++.+.
T Consensus 287 iiv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 287 VIVVNKWDLVKDEKTREEFKKELRRK------------LPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHh------------cccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999986 222223333333210 001134689999999999999999998753
No 180
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.60 E-value=8.8e-15 Score=116.37 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=84.3
Q ss_pred CceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCC
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKID 94 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~D 94 (155)
.....+.+++..+.+||+||++.|...+..++.++|++++|+|+++... ......+..+ .. .++| +++|+||+|
T Consensus 40 ~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~-~qT~ehl~il-~~---lgi~~iIVVlNK~D 114 (581)
T TIGR00475 40 LGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVM-TQTGEHLAVL-DL---LGIPHTIVVITKAD 114 (581)
T ss_pred eEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEECCC
Confidence 3456677888999999999999999999999999999999999987321 1122222222 21 2566 999999999
Q ss_pred cCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 95 IFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 95 l~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+... .+++.+.+...+ ...+.+++++||++|.|++++++++...+
T Consensus 115 lv~~~~~~~~~~ei~~~l~~~~-------------~~~~~~ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 115 RVNEEEIKRTEMFMKQILNSYI-------------FLKNAKIFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-------------CCCCCcEEEEeCCCCCCchhHHHHHHHHH
Confidence 865221 122333222210 01246899999999999999999887643
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.59 E-value=6e-14 Score=108.29 Aligned_cols=114 Identities=21% Similarity=0.276 Sum_probs=80.4
Q ss_pred ceeEEEECCEEEEEEEcCCC--------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 17 TSEELSMGDIVFTTHDLGGH--------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~--------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
....+.+++.++.+|||||. +.+......+++.||++++|+|+++..+... ..+...++. .++|+++
T Consensus 38 ~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piil 112 (429)
T TIGR03594 38 KYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPED--EEIAKWLRK---SGKPVIL 112 (429)
T ss_pred eEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEE
Confidence 35677788999999999995 4456667788999999999999986433322 222233222 2689999
Q ss_pred EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+||+|+.+.... ..+.... ..-.++++||++|.|+.++++++.+.+
T Consensus 113 VvNK~D~~~~~~~--~~~~~~l-----------------g~~~~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 113 VANKIDGKKEDAV--AAEFYSL-----------------GFGEPIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred EEECccCCccccc--HHHHHhc-----------------CCCCeEEEeCCcCCChHHHHHHHHHhc
Confidence 9999998652211 1111111 112589999999999999999998765
No 182
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.59 E-value=1.3e-14 Score=97.77 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=71.1
Q ss_pred EEEcCCChh----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHH
Q psy2161 30 THDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105 (155)
Q Consensus 30 ~~Dt~G~~~----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~ 105 (155)
+|||||... +.......+++||++++|+|+++..++.. .|+..+. .++|+++++||+|+.+ .....+.
T Consensus 41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~-----~~~~ii~v~nK~Dl~~-~~~~~~~ 112 (158)
T PRK15467 41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLP--AGLLDIG-----VSKRQIAVISKTDMPD-ADVAATR 112 (158)
T ss_pred cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCcccccC--HHHHhcc-----CCCCeEEEEEccccCc-ccHHHHH
Confidence 699999722 22222334789999999999998766522 3444431 3579999999999864 3344444
Q ss_pred hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 106 HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+...+ ...+++++||++|.|++++++++.+.+
T Consensus 113 ~~~~~~~---------------~~~p~~~~Sa~~g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 113 KLLLETG---------------FEEPIFELNSHDPQSVQQLVDYLASLT 146 (158)
T ss_pred HHHHHcC---------------CCCCEEEEECCCccCHHHHHHHHHHhc
Confidence 4443311 124799999999999999999998765
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.59 E-value=2.4e-14 Score=116.45 Aligned_cols=121 Identities=19% Similarity=0.147 Sum_probs=83.8
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
...+.+++.+++||||||+..|..++..+++.+|++|+|+|+++...-.. ...+... ...++|+++++||+|+.+
T Consensus 329 a~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT-~e~i~~a----~~~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 329 AYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQT-IEAINHA----KAAGVPIIVAINKIDKPG 403 (787)
T ss_pred EEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhH-HHHHHHH----HhcCCcEEEEEECccccc
Confidence 45677788999999999999999999999999999999999987322111 1112222 124689999999999864
Q ss_pred cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 98 AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
. ....+...+...+.. .......++++++||++|.|+++++++|..
T Consensus 404 a-~~e~V~~eL~~~~~~--------~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 404 A-NPDRVKQELSEYGLV--------PEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred c-CHHHHHHHHHHhccc--------HHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 2 333333333221100 000112468999999999999999999864
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.58 E-value=4.4e-14 Score=114.12 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
+..+.||||||+..|..++..+++.+|++++|+|+++...... ...+..+ ...++|+++++||+|+.+. ...++
T Consensus 294 ~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~-~~e~v 367 (742)
T CHL00189 294 NQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANA-NTERI 367 (742)
T ss_pred ceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCcccc-CHHHH
Confidence 4899999999999999999999999999999999976422211 1122222 1246899999999998652 33444
Q ss_pred HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...+...++. .......++++++||++|.|++++++++...
T Consensus 368 ~~eL~~~~ll--------~e~~g~~vpvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 368 KQQLAKYNLI--------PEKWGGDTPMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred HHHHHHhccc--------hHhhCCCceEEEEECCCCCCHHHHHHhhhhh
Confidence 4433221100 0000124689999999999999999998753
No 185
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=2.6e-14 Score=101.21 Aligned_cols=118 Identities=18% Similarity=0.140 Sum_probs=78.4
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc---h---HHHHHHHHHHHhCCCCCCCc
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---F---PESKYELDSLLADDALTDVP 85 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~---~---~~~~~~l~~~~~~~~~~~~p 85 (155)
.|+......+.+++.++++|||||+..+...+...++.+|++++|+|+++... + ......+... . ....+|
T Consensus 63 ~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~ 139 (219)
T cd01883 63 VTIDVGLAKFETEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-R--TLGVKQ 139 (219)
T ss_pred cCeecceEEEeeCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-H--HcCCCe
Confidence 34555567788899999999999999888888888889999999999987421 1 1111222111 1 122468
Q ss_pred EEEEEeCCCcCCc-CC---HHHHHhh----hcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 86 ILILGNKIDIFDA-AS---EDEVRHF----FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 86 iilv~nK~Dl~~~-~~---~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
+++++||+|+... .+ ...+.+. +...+ ....+++++++||++|.|++
T Consensus 140 iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 140 LIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEEEEEccccccccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCC
Confidence 9999999998631 12 1222222 22210 12235889999999999986
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.58 E-value=3.3e-14 Score=115.71 Aligned_cols=128 Identities=20% Similarity=0.208 Sum_probs=83.7
Q ss_pred CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHH
Q psy2161 2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESK 69 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~ 69 (155)
|.+++.....++.|++ ....++++..+.+|||||... +......+++.||++++|+|+++. +....
T Consensus 295 l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d 372 (712)
T PRK09518 295 ILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTD 372 (712)
T ss_pred HhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHH
Confidence 3444444445566654 334456789999999999652 445566788999999999999763 22222
Q ss_pred -HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161 70 -YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 70 -~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 148 (155)
.|...+ .. .++|+++|+||+|+.... ......... . . -..+++||++|.|+.++++
T Consensus 373 ~~i~~~L-r~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l---------------g-~-~~~~~iSA~~g~GI~eLl~ 429 (712)
T PRK09518 373 ERIVRML-RR---AGKPVVLAVNKIDDQASE--YDAAEFWKL---------------G-L-GEPYPISAMHGRGVGDLLD 429 (712)
T ss_pred HHHHHHH-Hh---cCCCEEEEEECcccccch--hhHHHHHHc---------------C-C-CCeEEEECCCCCCchHHHH
Confidence 233333 22 478999999999985421 112222111 0 0 1247899999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 430 ~i~~~l 435 (712)
T PRK09518 430 EALDSL 435 (712)
T ss_pred HHHHhc
Confidence 998765
No 187
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.58 E-value=1.3e-14 Score=111.94 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=78.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~~~~piilv~ 90 (155)
|+......+..+++++++|||||++.|......+++.+|++++|+|+++.+++.. ...++ .+.+.. ...|+++++
T Consensus 72 Tid~~~~~~~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~-~~~~~~--~~~~iIVvi 148 (426)
T TIGR00483 72 TIDVAHWKFETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHA-FLARTL--GINQLIVAI 148 (426)
T ss_pred eEEEEEEEEccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHH-HHHHHc--CCCeEEEEE
Confidence 3334456677788999999999999988777778899999999999988643311 11111 122211 235899999
Q ss_pred eCCCcCCcCC------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 91 NKIDIFDAAS------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 91 nK~Dl~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
||+|+.+... ..++...+...+ +....++++++||++|.|+.+
T Consensus 149 NK~Dl~~~~~~~~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 149 NKMDSVNYDEEEFEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred EChhccCccHHHHHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence 9999864111 123333332211 122357899999999999986
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.58 E-value=5.7e-14 Score=108.62 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=78.3
Q ss_pred CceeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
.....+.+++.++.+|||||... +......+++.+|++++|+|++++.+... .++...+.. .++|++
T Consensus 39 ~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~--~~~~~~l~~---~~~pii 113 (435)
T PRK00093 39 RIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVI 113 (435)
T ss_pred ceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEE
Confidence 34667788899999999999876 34445677889999999999987533321 222233322 268999
Q ss_pred EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHh
Q psy2161 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+|+||+|+.+. .....+.... ++ .++++||++|.|+.++++++.+
T Consensus 114 lv~NK~D~~~~--~~~~~~~~~l------------------g~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 114 LVVNKVDGPDE--EADAYEFYSL------------------GLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred EEEECccCccc--hhhHHHHHhc------------------CCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 99999997541 1222222221 11 3789999999999999999876
No 189
>KOG1673|consensus
Probab=99.57 E-value=2e-14 Score=94.18 Aligned_cols=131 Identities=21% Similarity=0.281 Sum_probs=100.5
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
+.+..|.|++ .+++...+ +.+.+||.+|++++..+.+-..+++-+|+|+||++.+.++..++.|.......+ ...
T Consensus 47 e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktA 125 (205)
T KOG1673|consen 47 EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTA 125 (205)
T ss_pred HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Ccc
Confidence 5667788887 57777776 889999999999999999999999999999999999999999999998885332 234
Q ss_pred CcEEEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 84 VPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+|+ +|++|.|+.-..+++ ++..... ...+..+-..+.||+....|+..+|..+...
T Consensus 126 iPi-lvGTKyD~fi~lp~e~Q~~I~~qar-------------~YAk~mnAsL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 126 IPI-LVGTKYDLFIDLPPELQETISRQAR-------------KYAKVMNASLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred ceE-EeccchHhhhcCCHHHHHHHHHHHH-------------HHHHHhCCcEEEeeccccccHHHHHHHHHHH
Confidence 565 569999975433332 1211111 1234456688999999999999999886543
No 190
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.57 E-value=7.5e-14 Score=111.15 Aligned_cols=127 Identities=18% Similarity=0.227 Sum_probs=91.7
Q ss_pred CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
+......+.++++++++|||||+..|...+..+++.+|++++|+|+++. .......++..... .++|+++|+||+
T Consensus 52 I~~~~~~v~~~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKi 126 (594)
T TIGR01394 52 ILAKNTAIRYNGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKI 126 (594)
T ss_pred EEeeeEEEEECCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECC
Confidence 3334567888999999999999999999999999999999999999763 34444566666543 358999999999
Q ss_pred CcCCcCC---HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhcC
Q psy2161 94 DIFDAAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYID 155 (155)
Q Consensus 94 Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 155 (155)
|+.+... ..++...+...+. .-....++++.+||++|. |+..+|+.+.+.+|
T Consensus 127 D~~~a~~~~v~~ei~~l~~~~g~----------~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 127 DRPSARPDEVVDEVFDLFAELGA----------DDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred CCCCcCHHHHHHHHHHHHHhhcc----------ccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 9865322 2333333322100 001134679999999996 79999999988764
No 191
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.55 E-value=5.2e-14 Score=107.95 Aligned_cols=113 Identities=19% Similarity=0.202 Sum_probs=78.4
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS---- 100 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~---- 100 (155)
+..+++|||||++.|...+......+|++++|+|+++..........+..+ .. ...+|+++++||+|+.+...
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHHHHHHH
Confidence 478999999999999999988889999999999998643112222223222 11 12357999999999864211
Q ss_pred HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..++...+.. .....++++++||++|.|+++++++|...+
T Consensus 156 ~~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 156 YEEIKEFVKG--------------TVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHHHhhhhh--------------cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 1222222221 112356899999999999999999998754
No 192
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.55 E-value=5.1e-13 Score=90.29 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=79.6
Q ss_pred eeEEEECCEEEEEEEcCCChhh----------H-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQA----------R-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~----------~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
...+..++..+.+|||||.... . .....+++++|++++|+|++++.+.... .++..... .+.|+
T Consensus 42 ~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~ 116 (174)
T cd01895 42 DVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKAL 116 (174)
T ss_pred eeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCE
Confidence 4566778888999999996322 1 1123456799999999999887665443 23333321 35899
Q ss_pred EEEEeCCCcCCc--CCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 87 LILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 87 ilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++++||+|+.+. .....+.+.+... +. .....++++||+++.|++++++++.+.
T Consensus 117 iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 117 VIVVNKWDLVEKDSKTMKEFKKEIRRK-------------LPFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEEeccccCCccHHHHHHHHHHHHhh-------------cccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 999999998653 2333333333220 11 123579999999999999999998764
No 193
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.54 E-value=1.5e-13 Score=104.56 Aligned_cols=131 Identities=17% Similarity=0.219 Sum_probs=88.0
Q ss_pred cCCCCCceeEEEECC-EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECC---CCCchHHHHHHHHHHHhCC
Q psy2161 11 MPTLHPTSEELSMGD-IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDAS---DRSRFPESKYELDSLLADD 79 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~-~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~---~~~~~~~~~~~l~~~~~~~ 79 (155)
.+|..++...+.+++ .++.|+||||... ........++.++++++|+|++ ..+.++....|+.++....
T Consensus 191 ~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~ 270 (390)
T PRK12298 191 FTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS 270 (390)
T ss_pred CCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh
Confidence 467777777788775 6799999999642 1112223578999999999998 4456666667777765432
Q ss_pred -CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 80 -ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 80 -~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.+.++|+++|+||+|+.+.....+....+.. .......++.+||+++.|++++++++.+.++
T Consensus 271 ~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~--------------~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 271 PKLAEKPRWLVFNKIDLLDEEEAEERAKAIVE--------------ALGWEGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred hhhcCCCEEEEEeCCccCChHHHHHHHHHHHH--------------HhCCCCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 2346899999999998642211111111111 0001125899999999999999999987663
No 194
>PRK10218 GTP-binding protein; Provisional
Probab=99.54 E-value=2.9e-13 Score=107.87 Aligned_cols=130 Identities=15% Similarity=0.153 Sum_probs=90.2
Q ss_pred cCCCCCc----eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 11 MPTLHPT----SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 11 ~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
..+.|.+ ...+.++++++++|||||+..|...+..+++.+|++++|+|+++.... ....++..... .++|.
T Consensus 49 E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~ 123 (607)
T PRK10218 49 EKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKP 123 (607)
T ss_pred cccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCE
Confidence 3455654 356677889999999999999999999999999999999999864322 22333343332 36899
Q ss_pred EEEEeCCCcCCcCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhh
Q psy2161 87 LILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANY 153 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 153 (155)
++++||+|+.+..... ++...+..... . -....++++.+||++|. |+..+++.+.+.
T Consensus 124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~---------~-~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 124 IVVINKVDRPGARPDWVVDQVFDLFVNLDA---------T-DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred EEEEECcCCCCCchhHHHHHHHHHHhccCc---------c-ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 9999999987533322 33333321000 0 01134779999999998 588888888877
Q ss_pred cC
Q psy2161 154 ID 155 (155)
Q Consensus 154 i~ 155 (155)
+|
T Consensus 194 iP 195 (607)
T PRK10218 194 VP 195 (607)
T ss_pred CC
Confidence 64
No 195
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.53 E-value=6.1e-14 Score=111.77 Aligned_cols=112 Identities=19% Similarity=0.186 Sum_probs=77.5
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHh------HHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRV------WRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~------~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...+++++.++++|||||+.++... ++.++. ++|++++|+|+++.+. ...+..++.+ .++|+++|
T Consensus 33 ~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~~----~~~PiIIV 105 (591)
T TIGR00437 33 EGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLLE----LGIPMILA 105 (591)
T ss_pred EEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHHh----cCCCEEEE
Confidence 4567788899999999998776432 444543 7999999999987432 2233333322 36899999
Q ss_pred EeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 90 GNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 90 ~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+||+|+.+... ..+.....+. .+++++++||++|.|++++++++.+.
T Consensus 106 lNK~Dl~~~~~i~~d~~~L~~~-----------------lg~pvv~tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 106 LNLVDEAEKKGIRIDEEKLEER-----------------LGVPVVPTSATEGRGIERLKDAIRKA 153 (591)
T ss_pred EehhHHHHhCCChhhHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 99999854221 1122221111 23579999999999999999999764
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.53 E-value=7.3e-14 Score=107.77 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=77.9
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~~~piilv~ 90 (155)
.|+......++.+++++.+|||||++.|.......++.+|++++|+|++++..+.. ....+. ++... ...|+++++
T Consensus 70 ~T~d~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~-~~~~~--~~~~iivvi 146 (425)
T PRK12317 70 VTIDLAHKKFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVF-LARTL--GINQLIVAI 146 (425)
T ss_pred ccceeeeEEEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHH-HHHHc--CCCeEEEEE
Confidence 45555667788888999999999998887666666789999999999986322211 122222 22211 235799999
Q ss_pred eCCCcCCcC------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 91 NKIDIFDAA------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 91 nK~Dl~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
||+|+.+.. ..+++...+...+ +....++++++||++|.|+++
T Consensus 147 NK~Dl~~~~~~~~~~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCccc
Confidence 999986411 1123333332211 111246899999999999986
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=2.1e-13 Score=90.47 Aligned_cols=121 Identities=24% Similarity=0.255 Sum_probs=82.7
Q ss_pred ceeEEEEC-CEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 17 TSEELSMG-DIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 17 ~~~~~~~~-~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
....+..+ +..+.+|||||..... ..+..+++.+|++++|+|+++........ +..... ..+.|+++
T Consensus 35 ~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~iv 109 (163)
T cd00880 35 VEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR----ERGKPVLL 109 (163)
T ss_pred eEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEE
Confidence 34444544 6899999999975532 35556888999999999999876665543 233332 24789999
Q ss_pred EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+||+|+............... .........++++||+++.|++++++++.+.+
T Consensus 110 v~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 110 VLNKIDLLPEEEEEELLELRLL------------ILLLLLGLPVIAVSALTGEGIDELREALIEAL 163 (163)
T ss_pred EEEccccCChhhHHHHHHHHHh------------hcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence 9999998653332222110011 01223456899999999999999999998753
No 198
>KOG4423|consensus
Probab=99.53 E-value=1.4e-15 Score=102.22 Aligned_cols=129 Identities=17% Similarity=0.165 Sum_probs=102.6
Q ss_pred cccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC-
Q psy2161 9 QHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT- 82 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~- 82 (155)
.|..|+|+. ..-+.++. +++++||.+||+++-.+..-||+.+.+..+|||++++.+|+.+..|..++.+...++
T Consensus 53 ~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpn 132 (229)
T KOG4423|consen 53 HYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPN 132 (229)
T ss_pred HHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCC
Confidence 355777764 45556655 789999999999999999999999999999999999999999999999987655443
Q ss_pred --CCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 83 --DVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 83 --~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..|+++..||||... ......+..+...++ ...++++|+|.+.|+.|+.+.|++.
T Consensus 133 g~Pv~~vllankCd~e~~a~~~~~~~~d~f~keng----------------f~gwtets~Kenkni~Ea~r~lVe~ 192 (229)
T KOG4423|consen 133 GTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENG----------------FEGWTETSAKENKNIPEAQRELVEK 192 (229)
T ss_pred CCcchheeccchhccChHhhhhhHHHHHHHHhccC----------------ccceeeeccccccChhHHHHHHHHH
Confidence 478999999999754 122345555554432 2468999999999999999988764
No 199
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.52 E-value=3e-13 Score=95.03 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=75.0
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+++++.++.+|||||+..|...+...++.+|++++|+|+++...-. ....+ .++... ..+++++|+||
T Consensus 64 T~~~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~-~~~~~~--~~~~iIvviNK 139 (208)
T cd04166 64 TIDVAYRYFSTPKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHS-YILSLL--GIRHVVVAVNK 139 (208)
T ss_pred CeecceeEEecCCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHH-HHHHHc--CCCcEEEEEEc
Confidence 444456677778899999999999988777777889999999999998653221 11111 122211 12468889999
Q ss_pred CCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 93 IDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 93 ~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
+|+.+... ...+...+... ...+......++++||++|.|+.+
T Consensus 140 ~D~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 140 MDLVDYSEEVFEEIVADYLAF----------AAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hhcccCCHHHHHHHHHHHHHH----------HHHcCCCCceEEEEeCCCCCCCcc
Confidence 99864211 11222222110 001222345799999999999875
No 200
>PRK00089 era GTPase Era; Reviewed
Probab=99.52 E-value=5.1e-13 Score=98.36 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=75.4
Q ss_pred EECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 22 SMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 22 ~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
..++.++.+|||||.... .......+.++|++++|+|+++. +.....++...+. ..+.|+++|+||+
T Consensus 49 ~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKi 123 (292)
T PRK00089 49 TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKI 123 (292)
T ss_pred EcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECC
Confidence 335589999999996432 23445567899999999999873 2222333333332 2368999999999
Q ss_pred CcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 94 DIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 94 Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
|+.. ...++....... . .......++++||++|.|++++++++.+.++
T Consensus 124 Dl~~--~~~~l~~~~~~l-----------~-~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 124 DLVK--DKEELLPLLEEL-----------S-ELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred cCCC--CHHHHHHHHHHH-----------H-hhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 9863 112222222110 0 0012357899999999999999999988763
No 201
>KOG0462|consensus
Probab=99.51 E-value=2.5e-13 Score=104.57 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=87.4
Q ss_pred eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 18 SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 18 ~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
...+-+.+ +.++++||||+-.|..-...-+.-|+|+++|+|++..-.-+........+. .+..+|.|+||+|
T Consensus 114 tasify~~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKID 188 (650)
T KOG0462|consen 114 TASIFYKDGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKID 188 (650)
T ss_pred eeEEEEEcCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccC
Confidence 44555544 999999999999999988888999999999999987544443333333331 3678999999999
Q ss_pred cCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
++..-+.....+..+.+. ...-+++.+|||+|.|++++++.+.+.+|
T Consensus 189 lp~adpe~V~~q~~~lF~--------------~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 189 LPSADPERVENQLFELFD--------------IPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred CCCCCHHHHHHHHHHHhc--------------CCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 987543333333333321 13347999999999999999999999875
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.50 E-value=8.7e-13 Score=94.39 Aligned_cols=137 Identities=15% Similarity=0.158 Sum_probs=93.0
Q ss_pred CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
+......+.+++.++++|||||+..|...+..+++.+|++++|+|+++.... ....++....+ .++|+++++||+
T Consensus 52 i~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~ 126 (237)
T cd04168 52 IFSAVASFQWEDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKI 126 (237)
T ss_pred eeeeeEEEEECCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECc
Confidence 3334677788899999999999999999999999999999999999875433 22344444422 368999999999
Q ss_pred CcCCc---CCHHHHHhhhcccCcc--CCC---------------------------------cccc--------ccc-cc
Q psy2161 94 DIFDA---ASEDEVRHFFGLYGLT--TGK---------------------------------EFTS--------REI-LQ 126 (155)
Q Consensus 94 Dl~~~---~~~~~i~~~~~~~~~~--~~~---------------------------------~~~~--------~~~-~~ 126 (155)
|+... ...+++...++...++ .+. +... ... ..
T Consensus 127 D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~ 206 (237)
T cd04168 127 DRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAK 206 (237)
T ss_pred cccCCCHHHHHHHHHHHHCCCeEEEECCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 98642 2233444444332111 000 0000 000 01
Q ss_pred CccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
..-++++..||.++.|+..+++.+.+.+|
T Consensus 207 ~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 207 RKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred CCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 23467889999999999999999998875
No 203
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.50 E-value=5.3e-13 Score=102.46 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=75.3
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---- 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---- 101 (155)
.++++|||||+..|..........+|++++|+|++++.........+..+ ... ...|+++|+||+|+.+....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMAL-DII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 68999999999998877777777889999999998643111111222222 111 23579999999998652111
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++...+.. ......+++++||++|.|+++++++|.+.+
T Consensus 162 ~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 162 EQIKEFVKG--------------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHHhcc--------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 222222221 112346899999999999999999998754
No 204
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.49 E-value=7e-13 Score=108.02 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=81.4
Q ss_pred CceeEEEECCEEEEEEEcCCCh----------hhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHV----------QARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
.....+.+++..+.+|||||.. .+..+ ...+++.||++++|+|+++..+..... ++..+.. .++
T Consensus 488 ~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~ 562 (712)
T PRK09518 488 PVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGR 562 (712)
T ss_pred cceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCC
Confidence 3456677888899999999953 12222 234578999999999999887776543 3444432 368
Q ss_pred cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
|+++|+||+|+.+......+...+... -......+++.+||++|.|++++++.+.+.
T Consensus 563 piIiV~NK~DL~~~~~~~~~~~~~~~~------------l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 563 ALVLVFNKWDLMDEFRRQRLERLWKTE------------FDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred CEEEEEEchhcCChhHHHHHHHHHHHh------------ccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 999999999986532222232222210 001123467899999999999999998764
No 205
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.49 E-value=5.3e-13 Score=92.52 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=80.0
Q ss_pred CCcccCCCCCce--eEEEECCEEEEEEEcCCC----------hhhHHhHHhhcCCC---CEEEEEEECCCCCchHHHHHH
Q psy2161 7 TAQHMPTLHPTS--EELSMGDIVFTTHDLGGH----------VQARRVWRDYFPAV---DAIVFIIDASDRSRFPESKYE 71 (155)
Q Consensus 7 ~~~~~pT~~~~~--~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~~~~~ 71 (155)
...+.|+.|.+. ..+.. +.++.+|||||. +.+......+++.+ +++++|+|.+.+.+... .+
T Consensus 50 ~~~~~~~~~~t~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~ 126 (196)
T PRK00454 50 LARTSKTPGRTQLINFFEV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELD--LQ 126 (196)
T ss_pred cccccCCCCceeEEEEEec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHH--HH
Confidence 455667776542 11222 478999999993 44555666666654 67888999876543322 22
Q ss_pred HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+...+.. .+.|+++++||+|+.+....+.....+.. .+......++++||++|.|++++++++.
T Consensus 127 i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-------------~l~~~~~~~~~~Sa~~~~gi~~l~~~i~ 190 (196)
T PRK00454 127 MIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-------------ALKFGDDEVILFSSLKKQGIDELRAAIA 190 (196)
T ss_pred HHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-------------HHHhcCCceEEEEcCCCCCHHHHHHHHH
Confidence 2222222 36899999999998642222221111111 0111245789999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 191 ~~~ 193 (196)
T PRK00454 191 KWL 193 (196)
T ss_pred HHh
Confidence 765
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.49 E-value=3.6e-13 Score=107.03 Aligned_cols=116 Identities=17% Similarity=0.187 Sum_probs=74.5
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC---
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--- 100 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--- 100 (155)
.+.+|||||++.|..++..+++.+|++++|+|+++ +++++.+ ..+ . ..++|+++++||+|+.+...
T Consensus 70 ~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l-~---~~~vpiIVv~NK~Dl~~~~~~~~ 141 (590)
T TIGR00491 70 GLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEAL----NIL-R---MYKTPFVVAANKIDRIPGWRSHE 141 (590)
T ss_pred cEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHH-H---HcCCCEEEEEECCCccchhhhcc
Confidence 48999999999999999999999999999999986 3333332 222 1 13689999999999864211
Q ss_pred -----------HHHHHh-----------hhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 101 -----------EDEVRH-----------FFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 101 -----------~~~i~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
...+.. .+...++..... ....-.....+++++||++|.|+++++.++..
T Consensus 142 ~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~--~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 142 GRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERF--DRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred CchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhh--hhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 011111 011101000000 00000123578999999999999999998753
No 207
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.48 E-value=3.2e-13 Score=90.26 Aligned_cols=111 Identities=23% Similarity=0.354 Sum_probs=75.5
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChh------hHHhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQ------ARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~------~~~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
|+......+.+++..+.++|+||..+ .......++ ...|++++|+|+++ ++.......+++.. ++
T Consensus 34 Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~---l~r~l~l~~ql~e~----g~ 106 (156)
T PF02421_consen 34 TVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN---LERNLYLTLQLLEL----GI 106 (156)
T ss_dssp SSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG---HHHHHHHHHHHHHT----TS
T ss_pred CeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC---HHHHHHHHHHHHHc----CC
Confidence 44445678888999999999999422 223445554 58999999999986 33334444555422 69
Q ss_pred cEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 85 PILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 85 piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
|+++++||+|... .+..+.+.+.++ ++++.+||+++.|++++++.+
T Consensus 107 P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg--------------------~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 107 PVVVVLNKMDEAERKGIEIDAEKLSERLG--------------------VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp SEEEEEETHHHHHHTTEEE-HHHHHHHHT--------------------S-EEEEBTTTTBTHHHHHHHH
T ss_pred CEEEEEeCHHHHHHcCCEECHHHHHHHhC--------------------CCEEEEEeCCCcCHHHHHhhC
Confidence 9999999999754 234455555554 489999999999999999864
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.48 E-value=1.4e-12 Score=93.16 Aligned_cols=122 Identities=19% Similarity=0.178 Sum_probs=82.0
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHH----------
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASDRSR-FPESKYELD---------- 73 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~---------- 73 (155)
+|..+....+.+++.++++||+||..+.. .....+++++|++++|+|++++.. ...+...++
T Consensus 33 tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~ 112 (233)
T cd01896 33 TTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRP 112 (233)
T ss_pred ccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCC
Confidence 46666677888899999999999974321 234467899999999999987542 222222221
Q ss_pred ------------------------------HHHhC------------------------CCCCCCcEEEEEeCCCcCCcC
Q psy2161 74 ------------------------------SLLAD------------------------DALTDVPILILGNKIDIFDAA 99 (155)
Q Consensus 74 ------------------------------~~~~~------------------------~~~~~~piilv~nK~Dl~~~~ 99 (155)
.+++. ....-+|+++|+||+|+.+
T Consensus 113 ~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-- 190 (233)
T cd01896 113 PNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-- 190 (233)
T ss_pred CeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCC--
Confidence 11100 0112369999999999843
Q ss_pred CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 100 SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 100 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.++....... ..++++||++|.|++++++.+.+.++
T Consensus 191 -~~~~~~~~~~-------------------~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 191 -IEELDLLARQ-------------------PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred -HHHHHHHhcC-------------------CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 3333332211 24889999999999999999998764
No 209
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.47 E-value=1.9e-12 Score=86.73 Aligned_cols=114 Identities=20% Similarity=0.228 Sum_probs=74.7
Q ss_pred EEECCEEEEEEEcCCChhh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 21 LSMGDIVFTTHDLGGHVQA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 21 ~~~~~~~~~~~Dt~G~~~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
+...+..+.+|||||.... .......+..+|++++|+|++++. .....++...+.. .+.|+++|+||
T Consensus 46 ~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK 120 (168)
T cd04163 46 YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNK 120 (168)
T ss_pred EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEc
Confidence 3445689999999996432 224456688999999999998762 2222233232222 25899999999
Q ss_pred CCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 93 IDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 93 ~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+.. .....+....+.. ......++++|++++.|+++++++|.+.+
T Consensus 121 ~Dl~~~~~~~~~~~~~~~~---------------~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 121 IDLVKDKEDLLPLLEKLKE---------------LGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred hhccccHHHHHHHHHHHHh---------------ccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 99863 1112222222221 11135789999999999999999998754
No 210
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.47 E-value=1.4e-12 Score=100.89 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=77.8
Q ss_pred eEEEECCEEEEEEEcCCChh----------hH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 19 EELSMGDIVFTTHDLGGHVQ----------AR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~----------~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
..+.+++..+.+|||||... +. .....+++.+|++++|+|++++.+.... .++..+.. .++|++
T Consensus 214 ~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~----~~~~~i 288 (435)
T PRK00093 214 TPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDL-RIAGLALE----AGRALV 288 (435)
T ss_pred EEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCcEE
Confidence 44566889999999999532 11 1123467899999999999987665443 23333322 368999
Q ss_pred EEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 88 lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+++||+|+.+.....++.+.+... -......+++++||++|.|++++++++.+
T Consensus 289 vv~NK~Dl~~~~~~~~~~~~~~~~------------l~~~~~~~i~~~SA~~~~gv~~l~~~i~~ 341 (435)
T PRK00093 289 IVVNKWDLVDEKTMEEFKKELRRR------------LPFLDYAPIVFISALTGQGVDKLLEAIDE 341 (435)
T ss_pred EEEECccCCCHHHHHHHHHHHHHh------------cccccCCCEEEEeCCCCCCHHHHHHHHHH
Confidence 999999986422222333322210 00113457999999999999999998765
No 211
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.47 E-value=8e-13 Score=90.69 Aligned_cols=117 Identities=19% Similarity=0.269 Sum_probs=71.6
Q ss_pred CCcccCCCCCc--eeEEEECCEEEEEEEcCCC----------hhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHH
Q psy2161 7 TAQHMPTLHPT--SEELSMGDIVFTTHDLGGH----------VQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYE 71 (155)
Q Consensus 7 ~~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~ 71 (155)
...+.++.|.+ ...+..++ .+.+|||||. ..+......|++. ++++++|+|++++-+.... .+
T Consensus 44 ~~~~~~~~~~t~~~~~~~~~~-~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~ 121 (179)
T TIGR03598 44 LARTSKTPGRTQLINFFEVND-GFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EM 121 (179)
T ss_pred cccccCCCCcceEEEEEEeCC-cEEEEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HH
Confidence 34556676654 22333343 7999999994 2344444556654 5799999999875443332 22
Q ss_pred HHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 72 LDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
+. .+.. .++|+++++||+|+..... ..++.+.+... ...+.++++||++|+|++
T Consensus 122 ~~-~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~---------------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 122 LE-WLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD---------------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc---------------cCCCceEEEECCCCCCCC
Confidence 22 2222 3689999999999864221 22333333321 123579999999999974
No 212
>COG1159 Era GTPase [General function prediction only]
Probab=99.46 E-value=3.4e-12 Score=92.18 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=85.5
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
++|...-...+..++.++.|.||||-.. ........+.++|+++||+|++....- ...++-+.++. .
T Consensus 39 QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~ 113 (298)
T COG1159 39 QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGP--GDEFILEQLKK---T 113 (298)
T ss_pred chhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCc--cHHHHHHHHhh---c
Confidence 3444444566666789999999999432 334456678899999999999874333 22344444332 3
Q ss_pred CCcEEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 83 DVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+.|+++++||+|...... ...+...+.. ......++++||++|.|++.+.+.+...+|
T Consensus 114 ~~pvil~iNKID~~~~~~~l~~~~~~~~~---------------~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 114 KTPVILVVNKIDKVKPKTVLLKLIAFLKK---------------LLPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred CCCeEEEEEccccCCcHHHHHHHHHHHHh---------------hCCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 579999999999765333 2233333322 112348999999999999999999988775
No 213
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.2e-12 Score=100.81 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=83.5
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE 101 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 101 (155)
.-.+.|.||||++.|..+...-.+=+|.+++|+|+++ |++.+.+ ++....+.|++++.||+|..+ ..+
T Consensus 54 ~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI--------~hak~a~vP~iVAiNKiDk~~-~np 124 (509)
T COG0532 54 IPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAI--------NHAKAAGVPIVVAINKIDKPE-ANP 124 (509)
T ss_pred CceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHH--------HHHHHCCCCEEEEEecccCCC-CCH
Confidence 3789999999999999999999999999999999987 3333332 222335799999999999875 445
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..+...+...++.+ +.......++++||++|.|+.+++..+.-
T Consensus 125 ~~v~~el~~~gl~~--------E~~gg~v~~VpvSA~tg~Gi~eLL~~ill 167 (509)
T COG0532 125 DKVKQELQEYGLVP--------EEWGGDVIFVPVSAKTGEGIDELLELILL 167 (509)
T ss_pred HHHHHHHHHcCCCH--------hhcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence 55555555433221 12234578999999999999999988753
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.45 E-value=7.5e-13 Score=105.91 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=80.3
Q ss_pred CCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEE
Q psy2161 12 PTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILIL 89 (155)
Q Consensus 12 pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv 89 (155)
+|+......+.. ++..+.+|||||++.|...+...+.++|++++|+|+++... ......+. ++... ++| +++|
T Consensus 36 iTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~-~qT~ehl~-il~~l---gi~~iIVV 110 (614)
T PRK10512 36 MTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVM-AQTREHLA-ILQLT---GNPMLTVA 110 (614)
T ss_pred ceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCc-HHHHHHHH-HHHHc---CCCeEEEE
Confidence 333333334433 45789999999999998888888999999999999976321 12222222 22221 345 6899
Q ss_pred EeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 90 GNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 90 ~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+||+|+.+.... .++...+.. ......+++++||++|.|+++++++|.+.
T Consensus 111 lNKiDlv~~~~~~~v~~ei~~~l~~--------------~~~~~~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 111 LTKADRVDEARIAEVRRQVKAVLRE--------------YGFAEAKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred EECCccCCHHHHHHHHHHHHHHHHh--------------cCCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 999998642211 223333222 11123579999999999999999998764
No 215
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=6.8e-13 Score=100.83 Aligned_cols=108 Identities=19% Similarity=0.242 Sum_probs=82.3
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC---HH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS---ED 102 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~ 102 (155)
+.++++||||+-.|.--....+..|.|.++|+|+++.-.-+.+.+....+- .+..++-|+||+||+...+ ..
T Consensus 76 Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 76 YVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred EEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCHHHHHH
Confidence 999999999999887766777888999999999987544444444444442 3678999999999986322 23
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
++...++. ..-..+.||||+|.||+++++.+.+.+|
T Consensus 151 eIe~~iGi-----------------d~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 151 EIEDIIGI-----------------DASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred HHHHHhCC-----------------CcchheeEecccCCCHHHHHHHHHhhCC
Confidence 44444444 3346799999999999999999998876
No 216
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.43 E-value=6.1e-13 Score=95.61 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=72.2
Q ss_pred hhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-HHHHhhhcccCcc
Q psy2161 37 VQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLT 114 (155)
Q Consensus 37 ~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~i~~~~~~~~~~ 114 (155)
+++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+||.+.... .+....+.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~----- 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR----- 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-----
Confidence 556777778999999999999999877 88888888876532 47899999999999642111 11122221
Q ss_pred CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..++.++++||++|.|++++|+.+.+
T Consensus 95 ------------~~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 ------------NIGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred ------------HCCCeEEEEecCCchhHHHHHhhhcC
Confidence 13468999999999999999998865
No 217
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.43 E-value=7e-12 Score=87.24 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=72.6
Q ss_pred ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCc
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDI 95 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl 95 (155)
....++.++.++.+.||||+..|.......+..+|++++|+|++..-.- .....+..+.. .++| +++++||+|+
T Consensus 56 ~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~----~~~~~iIvviNK~D~ 130 (195)
T cd01884 56 AHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ----VGVPYIVVFLNKADM 130 (195)
T ss_pred eeeEecCCCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCcEEEEEeCCCC
Confidence 3455566779999999999999888788888999999999999764221 12223333321 2455 7899999998
Q ss_pred CCcC-----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCCh
Q psy2161 96 FDAA-----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF 143 (155)
Q Consensus 96 ~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 143 (155)
.... ..+++...+...+ +.....+++++||++|.|+
T Consensus 131 ~~~~~~~~~~~~~i~~~l~~~g------------~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 131 VDDEELLELVEMEVRELLSKYG------------FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCcHHHHHHHHHHHHHHHHHhc------------ccccCCeEEEeeCccccCC
Confidence 5311 1123333333211 1224578999999999985
No 218
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.42 E-value=2.4e-13 Score=103.84 Aligned_cols=145 Identities=21% Similarity=0.359 Sum_probs=103.7
Q ss_pred ccCCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhC
Q psy2161 10 HMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLAD 78 (155)
Q Consensus 10 ~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~ 78 (155)
..+|.|+....+.+ ++..+.++|+||++..+..|.+++.++++||||+++++ .+.+.+....++.+.+.
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 46899999999999 99999999999999999999999999999999999864 24467778889999988
Q ss_pred CCCCCCcEEEEEeCCCcCC-cCCHHH-HHhhhcccCccC-CCcccc-------ccc---ccC--ccEEEEEeeeccCCCh
Q psy2161 79 DALTDVPILILGNKIDIFD-AASEDE-VRHFFGLYGLTT-GKEFTS-------REI---LQM--RPIELFMCSVLKRQGF 143 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~-~~~~~~-i~~~~~~~~~~~-~~~~~~-------~~~---~~~--~~~~~~~~Sa~~~~~i 143 (155)
..+.+.|++|++||.|+.. ++.... +...+..+.+.. ...... +.. ... +.+.++.++|.+..++
T Consensus 299 ~~~~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~ 378 (389)
T PF00503_consen 299 PWFKNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENI 378 (389)
T ss_dssp GGGTTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHH
T ss_pred cccccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHH
Confidence 8888999999999999754 221111 344444432220 111100 011 111 6778899999999999
Q ss_pred HHHHHHHHhhc
Q psy2161 144 GNGFRWLANYI 154 (155)
Q Consensus 144 ~~~~~~l~~~i 154 (155)
..+|..+.+.|
T Consensus 379 ~~v~~~v~~~i 389 (389)
T PF00503_consen 379 RKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhcCcC
Confidence 99999887653
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.40 E-value=4.8e-12 Score=100.82 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=73.6
Q ss_pred EEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----
Q psy2161 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS---- 100 (155)
Q Consensus 28 ~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~---- 100 (155)
+.+|||||+..|..++...++.+|++++|+|+++ +++++.+ ..+ .. .++|+++++||+|+.....
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~-~~---~~vpiIvviNK~D~~~~~~~~~~ 144 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NIL-KR---RKTPFVVAANKIDRIPGWKSTED 144 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHH-HH---cCCCEEEEEECcCCchhhhhhcC
Confidence 7899999999999999999999999999999986 3444332 222 11 3689999999999853111
Q ss_pred ----------HHH-----------HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 101 ----------EDE-----------VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 101 ----------~~~-----------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
... +...+...++....... . .-....++++++||++|.|++++++.+.
T Consensus 145 ~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~-~-~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 145 APFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDR-V-KDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhh-h-hccCCCceEeeccCCCCCChHHHHHHHH
Confidence 011 11122211111000000 0 0012357899999999999999888765
No 220
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.40 E-value=4.2e-12 Score=100.03 Aligned_cols=87 Identities=23% Similarity=0.299 Sum_probs=63.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
...++++++++++|||||+..|......+++.+|++++|+|+++.... ....++.... ..++|+++++||+|+..
T Consensus 71 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 71 VMQFPYRDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred eEEEEECCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence 566888899999999999999988777789999999999999864322 2233333332 24789999999999865
Q ss_pred cCC---HHHHHhhhc
Q psy2161 98 AAS---EDEVRHFFG 109 (155)
Q Consensus 98 ~~~---~~~i~~~~~ 109 (155)
... ..++.+.++
T Consensus 146 a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 146 REPLELLDEIEEVLG 160 (526)
T ss_pred cCHHHHHHHHHHHhC
Confidence 332 244544444
No 221
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.39 E-value=5.2e-12 Score=95.84 Aligned_cols=130 Identities=22% Similarity=0.233 Sum_probs=88.1
Q ss_pred CCCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEECCCCCchHH
Q psy2161 1 MLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDASDRSRFPE 67 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~ 67 (155)
||.+.+.....-+-|++ ....++.+..|.+.||||-.. .+......+..||++|||+|+...-+ .
T Consensus 22 RL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git--~ 99 (444)
T COG1160 22 RLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGIT--P 99 (444)
T ss_pred HHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCC--H
Confidence 34455554445555554 677888899999999999542 22344566779999999999965322 2
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161 68 SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 68 ~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
....+.+.+. ..++|++||+||+|... ......++..+ ..-..+.+||..|.|+.+++
T Consensus 100 ~D~~ia~~Lr---~~~kpviLvvNK~D~~~--~e~~~~efysl-----------------G~g~~~~ISA~Hg~Gi~dLl 157 (444)
T COG1160 100 ADEEIAKILR---RSKKPVILVVNKIDNLK--AEELAYEFYSL-----------------GFGEPVPISAEHGRGIGDLL 157 (444)
T ss_pred HHHHHHHHHH---hcCCCEEEEEEcccCch--hhhhHHHHHhc-----------------CCCCceEeehhhccCHHHHH
Confidence 2334444443 23699999999999753 22223333332 11268999999999999999
Q ss_pred HHHHhhc
Q psy2161 148 RWLANYI 154 (155)
Q Consensus 148 ~~l~~~i 154 (155)
+++.+.+
T Consensus 158 d~v~~~l 164 (444)
T COG1160 158 DAVLELL 164 (444)
T ss_pred HHHHhhc
Confidence 9998875
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.39 E-value=2.5e-11 Score=86.18 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=79.5
Q ss_pred eEEEECCEEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
..++.++..+++.||||++.|.......+. .+|++++|+|++.... .....++..+.. .++|+++|+||+|+.
T Consensus 77 ~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~ 151 (224)
T cd04165 77 EICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLA 151 (224)
T ss_pred eeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 445667899999999999998766555554 6899999999876432 222333333321 258999999999985
Q ss_pred CcCC----HHHHHhhhcccCccC-CC-----cc---cccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 97 DAAS----EDEVRHFFGLYGLTT-GK-----EF---TSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 97 ~~~~----~~~i~~~~~~~~~~~-~~-----~~---~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+... ..++...+...+... +. .. +..+.......+++.+||++|.|++++...|..
T Consensus 152 ~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 152 PANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred CHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 4211 223333333211100 00 00 000111123458999999999999999988754
No 223
>PRK13351 elongation factor G; Reviewed
Probab=99.39 E-value=2e-11 Score=99.31 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=67.6
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
+.+|+......+.++++++++|||||+..|...+..+++.+|++++|+|+++.........| .... ..++|++++
T Consensus 57 r~~ti~~~~~~~~~~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~----~~~~p~iiv 131 (687)
T PRK13351 57 RGITIESAATSCDWDNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQAD----RYGIPRLIF 131 (687)
T ss_pred cCCCcccceEEEEECCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----hcCCCEEEE
Confidence 55677777788999999999999999999999999999999999999999886665543333 3332 136899999
Q ss_pred EeCCCcCC
Q psy2161 90 GNKIDIFD 97 (155)
Q Consensus 90 ~nK~Dl~~ 97 (155)
+||+|+.+
T Consensus 132 iNK~D~~~ 139 (687)
T PRK13351 132 INKMDRVG 139 (687)
T ss_pred EECCCCCC
Confidence 99999875
No 224
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.37 E-value=2.4e-11 Score=86.12 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=53.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++++++|||||+..|......+++.+|++++|+|+++...... ...+..... .++|+++++||+|+.
T Consensus 72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 6899999999999999999999999999999999987654433 233333322 257999999999975
No 225
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.37 E-value=2.6e-13 Score=86.92 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=55.2
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH---HHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK---YELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~---~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
..+.+||++|+..+...+..+++++|++++|||++++.+++.+. .|+..+.+. ..+.|+++|+||.|
T Consensus 50 ~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 50 QSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred eEEEEEecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 57999999999988888887899999999999999999998864 456666432 24599999999998
No 226
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.35 E-value=1.3e-11 Score=102.91 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=74.2
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--H
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS--E 101 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~--~ 101 (155)
.+.||||||+..|..+....++.+|++++|+|+++ +++++. +..+. . .++|+++|+||+|+..... .
T Consensus 527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~----I~~lk-~---~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEA----INILR-Q---YKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHH----HHHHH-H---cCCCEEEEEECCCCcccccccc
Confidence 38999999999999888888899999999999986 333332 22222 1 2589999999999864211 0
Q ss_pred ------------HHHHhhh-----------cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 102 ------------DEVRHFF-----------GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 102 ------------~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+...+.+ ...++.+... ...+-....++++++||++|.|+++++.++..
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~--~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRF--DRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhh--hhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1111111 1111000000 00001134678999999999999999988753
No 227
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.35 E-value=1e-11 Score=96.26 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=76.3
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----H
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----E 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~ 101 (155)
.++.|+|+||++.|...+...+..+|++++|+|++...........+... .. ..-.|+++|+||+|+.+... .
T Consensus 117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~--lgi~~iIVvlNKiDlv~~~~~~~~~ 193 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EI--MKLKHIIILQNKIDLVKEAQAQDQY 193 (460)
T ss_pred ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HH--cCCCcEEEEEecccccCHHHHHHHH
Confidence 57999999999999888777788999999999998631111112222211 11 12357999999999864211 1
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+++.+.+.. ......+++++||++|.|++++++.|.+.++
T Consensus 194 ~ei~~~l~~--------------~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 194 EEIRNFVKG--------------TIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHh--------------hccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 222222211 1124568999999999999999999986543
No 228
>KOG1145|consensus
Probab=99.35 E-value=2.2e-11 Score=94.07 Aligned_cols=124 Identities=18% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
-+|-...++. +|.+++|.||||+..|..|+..-.+-+|++++|+.+.|.-.- +.++.+ ++....++|+++.+||
T Consensus 189 hIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmp----QT~EaI-khAk~A~VpiVvAinK 262 (683)
T KOG1145|consen 189 HIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDGVMP----QTLEAI-KHAKSANVPIVVAINK 262 (683)
T ss_pred eeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCCccH----hHHHHH-HHHHhcCCCEEEEEec
Confidence 3444455555 779999999999999999999999999999999988763211 122222 2333468999999999
Q ss_pred CCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 93 IDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 93 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+|.++. +++.+...+-.+++. -+--....+++++||++|.|++.+-+.+.
T Consensus 263 iDkp~a-~pekv~~eL~~~gi~--------~E~~GGdVQvipiSAl~g~nl~~L~eail 312 (683)
T KOG1145|consen 263 IDKPGA-NPEKVKRELLSQGIV--------VEDLGGDVQVIPISALTGENLDLLEEAIL 312 (683)
T ss_pred cCCCCC-CHHHHHHHHHHcCcc--------HHHcCCceeEEEeecccCCChHHHHHHHH
Confidence 998764 444444444433221 01122467899999999999998887764
No 229
>KOG0085|consensus
Probab=99.33 E-value=4.1e-13 Score=93.92 Aligned_cols=146 Identities=18% Similarity=0.330 Sum_probs=118.9
Q ss_pred CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHH
Q psy2161 7 TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLL 76 (155)
Q Consensus 7 ~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~ 76 (155)
....+||.|+....++..++.|.+.|.||+++-+..|-+++.+.-.++|.+.++ +.+.+++.+.++..++
T Consensus 180 LRvRvPTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi 259 (359)
T KOG0085|consen 180 LRVRVPTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII 259 (359)
T ss_pred heeecCcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999999887554 3667788889999999
Q ss_pred hCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCccccccc-------cc---CccEEEEEeeeccCCChHH
Q psy2161 77 ADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREI-------LQ---MRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~Sa~~~~~i~~ 145 (155)
..+...+.++|+.+||.|+.+ ++....+..++..+.+|+.+..++..- .+ .+.+.-+.++|.+..||.-
T Consensus 260 ~yPWF~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRf 339 (359)
T KOG0085|consen 260 TYPWFQNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRF 339 (359)
T ss_pred ccccccCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHH
Confidence 999999999999999999876 677788889998887775444433221 11 2344567889999999998
Q ss_pred HHHHHHh
Q psy2161 146 GFRWLAN 152 (155)
Q Consensus 146 ~~~~l~~ 152 (155)
+|..+.+
T Consensus 340 VFaaVkD 346 (359)
T KOG0085|consen 340 VFAAVKD 346 (359)
T ss_pred HHHHHHH
Confidence 8877654
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=99.33 E-value=3.3e-11 Score=92.26 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=77.2
Q ss_pred eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcCC
Q psy2161 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIFD 97 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~~ 97 (155)
..+..++.++.++||||++.|.......+..+|++++|+|++....- .....+..+.. .++| +++++||+|+.+
T Consensus 68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~----~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 68 VEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ----VGVPYLVVFLNKVDLVD 142 (394)
T ss_pred eEecCCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH----cCCCEEEEEEEecCCcc
Confidence 34444668999999999999887777778899999999999763221 22233333321 2567 678999999863
Q ss_pred cCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHhhc
Q psy2161 98 AAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLANYI 154 (155)
Q Consensus 98 ~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i 154 (155)
... .+++...+...+ ......+++++||++|. ++.++++.+.+.+
T Consensus 143 ~~~~~~~i~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 143 DEELLELVEMEVRELLSEYD------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred hHHHHHHHHHHHHHHHHHhC------------CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 111 112333322211 11234689999999983 5788888887654
No 231
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.33 E-value=1.9e-11 Score=94.78 Aligned_cols=116 Identities=18% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchH-------HHHHHHHHHHhCCCCCCC-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFP-------ESKYELDSLLADDALTDV- 84 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~-------~~~~~l~~~~~~~~~~~~- 84 (155)
|+......++.+++.++++|+||++.|.......++.+|++|+|+|+++. .|+ ..+..+... .. .++
T Consensus 72 Ti~~~~~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~~---~gi~ 146 (447)
T PLN00043 72 TIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-FT---LGVK 146 (447)
T ss_pred eEEEEEEEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-HH---cCCC
Confidence 34344566677789999999999999999999999999999999999862 221 222222222 11 245
Q ss_pred cEEEEEeCCCcCC-cCC-------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 85 PILILGNKIDIFD-AAS-------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 85 piilv~nK~Dl~~-~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
++++++||+|+.+ ... .+++..++...+ +....++++++||++|.|+.+
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence 5788999999752 111 233444433311 122357899999999999853
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.33 E-value=2.4e-11 Score=93.28 Aligned_cols=119 Identities=18% Similarity=0.170 Sum_probs=74.9
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+++++.++.++||||+..|.......+..+|++++|+|++....-.....+ . +.... ...++++++||
T Consensus 67 Tid~~~~~~~~~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~-~~~~~--~~~~iivviNK 142 (406)
T TIGR02034 67 TIDVAYRYFSTDKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-Y-IASLL--GIRHVVLAVNK 142 (406)
T ss_pred CeEeeeEEEccCCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-H-HHHHc--CCCcEEEEEEe
Confidence 44445667777889999999999999987777788999999999999754221111111 1 11111 23479999999
Q ss_pred CCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 93 IDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 93 ~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
+|+.+... .+++...+... .........+++++||++|.|+.+
T Consensus 143 ~D~~~~~~~~~~~i~~~~~~~----------~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 143 MDLVDYDEEVFENIKKDYLAF----------AEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cccccchHHHHHHHHHHHHHH----------HHHcCCCCccEEEeecccCCCCcc
Confidence 99864111 11222222110 000111346799999999999875
No 233
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.33 E-value=3.7e-11 Score=91.50 Aligned_cols=116 Identities=15% Similarity=0.166 Sum_probs=81.7
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhH--------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQAR--------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
+|..+-...++++|+.+.+.||+|.+... ......+++||.++||+|++.+.+-... ..+. ....+
T Consensus 251 TTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~-----~~~~~ 324 (454)
T COG0486 251 TTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDL-ALIE-----LLPKK 324 (454)
T ss_pred CccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhH-HHHH-----hcccC
Confidence 55666688999999999999999965421 2234457899999999999885222211 1122 12347
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+|+++|.||.|+......... +.. ...+++.+|+++|.|++.+.+.+.+.
T Consensus 325 ~~~i~v~NK~DL~~~~~~~~~-~~~-------------------~~~~~i~iSa~t~~Gl~~L~~~i~~~ 374 (454)
T COG0486 325 KPIIVVLNKADLVSKIELESE-KLA-------------------NGDAIISISAKTGEGLDALREAIKQL 374 (454)
T ss_pred CCEEEEEechhcccccccchh-hcc-------------------CCCceEEEEecCccCHHHHHHHHHHH
Confidence 899999999999764432222 111 12368999999999999999988764
No 234
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.32 E-value=1.5e-11 Score=100.59 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=76.2
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH----------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR----------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p 85 (155)
...+.+++.++++|||||..++.. ....++ ..+|++++|+|+++.++. ..+..++.+ .++|
T Consensus 42 ~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giP 114 (772)
T PRK09554 42 EGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIP 114 (772)
T ss_pred EEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCC
Confidence 445667789999999999876532 133443 489999999999875432 334444432 2689
Q ss_pred EEEEEeCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 86 ILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 86 iilv~nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+++++||+|+.+... ..+.....+. .+++++++||++|.|++++++.+.+.
T Consensus 115 vIvVlNK~Dl~~~~~i~id~~~L~~~-----------------LG~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 115 CIVALNMLDIAEKQNIRIDIDALSAR-----------------LGCPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred EEEEEEchhhhhccCcHHHHHHHHHH-----------------hCCCEEEEEeecCCCHHHHHHHHHHh
Confidence 999999999864221 1222222121 23579999999999999999988653
No 235
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.31 E-value=7.1e-11 Score=79.25 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=77.5
Q ss_pred CCcccCCCCCce--eEEEECCEEEEEEEcCCC----------hhhHHhHHhhcC---CCCEEEEEEECCCCCchH--HHH
Q psy2161 7 TAQHMPTLHPTS--EELSMGDIVFTTHDLGGH----------VQARRVWRDYFP---AVDAIVFIIDASDRSRFP--ESK 69 (155)
Q Consensus 7 ~~~~~pT~~~~~--~~~~~~~~~~~~~Dt~G~----------~~~~~~~~~~~~---~ad~ii~v~D~~~~~~~~--~~~ 69 (155)
.....+|.+.+. ..+... ..+.+|||||. +.+...+..|++ .++++++++|.+...+.. .+.
T Consensus 25 ~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~ 103 (170)
T cd01876 25 LARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEML 103 (170)
T ss_pred eeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHH
Confidence 344556666542 223333 39999999993 234555566665 356889999987653222 222
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc--cCccEEEEEeeeccCCChHHHH
Q psy2161 70 YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL--QMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 70 ~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
.|+... +.|+++++||+|+............+.. .+ .....+++++||+++.|+.+++
T Consensus 104 ~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~Sa~~~~~~~~l~ 163 (170)
T cd01876 104 DWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKK-------------ELKLFEIDPPIILFSSLKGQGIDELR 163 (170)
T ss_pred HHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHH-------------HHHhccCCCceEEEecCCCCCHHHHH
Confidence 333322 4799999999998542211111111111 01 1234578899999999999999
Q ss_pred HHHHhhc
Q psy2161 148 RWLANYI 154 (155)
Q Consensus 148 ~~l~~~i 154 (155)
++|.+.+
T Consensus 164 ~~l~~~~ 170 (170)
T cd01876 164 ALIEKWL 170 (170)
T ss_pred HHHHHhC
Confidence 9998764
No 236
>KOG1489|consensus
Probab=99.31 E-value=2.5e-11 Score=88.29 Aligned_cols=123 Identities=20% Similarity=0.306 Sum_probs=84.4
Q ss_pred CCCCCceeEEEECC-EEEEEEEcCCChh----hHHhHHh---hcCCCCEEEEEEECCCC---CchHHHHHHHHHHHh-CC
Q psy2161 12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRD---YFPAVDAIVFIIDASDR---SRFPESKYELDSLLA-DD 79 (155)
Q Consensus 12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~~~~~~---~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~-~~ 79 (155)
+|+-++...+.+++ .++.+.|.||--. .+.+... -+..|++++||+|++.+ +.++.+..+..++-. ..
T Consensus 229 TTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek 308 (366)
T KOG1489|consen 229 TTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK 308 (366)
T ss_pred eeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh
Confidence 44445555777777 4599999999432 2222222 25689999999999987 666666555544432 23
Q ss_pred CCCCCcEEEEEeCCCcCCcC-CH-HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 80 ALTDVPILILGNKIDIFDAA-SE-DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+.+.|.++|+||+|+.+.. .. .++...++. -+++++||++++|+++++..|.+.
T Consensus 309 ~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~-------------------~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 309 GLADRPALIVANKIDLPEAEKNLLSSLAKRLQN-------------------PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred hhccCceEEEEeccCchhHHHHHHHHHHHHcCC-------------------CcEEEeeeccccchHHHHHHHhhc
Confidence 55789999999999986422 11 334444333 269999999999999999988754
No 237
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.30 E-value=5.8e-11 Score=83.69 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=53.0
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+.+++|||||+..+...+..+++.+|++++|+|+++..+... ..++..... .++|+++|+||+|+.
T Consensus 71 ~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 71 YLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred EEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 899999999999998888899999999999999987655532 334443321 258999999999975
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.30 E-value=1e-10 Score=87.85 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=89.4
Q ss_pred cccCCCCCceeEEEEC-CEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 9 QHMPTLHPTSEELSMG-DIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~-~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
..-.|..++.+.+.+. |..+.+-||-|- ..|++.... ...||++++|+|+++|...+.+ ....+++..
T Consensus 222 ~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE-~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~e 299 (411)
T COG2262 222 QLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEE-VKEADLLLHVVDASDPEILEKL-EAVEDVLAE 299 (411)
T ss_pred cccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHH-hhcCCEEEEEeecCChhHHHHH-HHHHHHHHH
Confidence 4557888889999987 599999999993 346665555 5589999999999998544443 334445555
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.....+|+++|.||+|+..... ....+.. . .+ ..+.+||++|.|++.+++.|.+.+
T Consensus 300 l~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---------------~-~~-~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 300 IGADEIPIILVLNKIDLLEDEE---ILAELER---------------G-SP-NPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred cCCCCCCEEEEEecccccCchh---hhhhhhh---------------c-CC-CeEEEEeccCcCHHHHHHHHHHHh
Confidence 5566799999999999754221 1111111 0 11 579999999999999999988765
No 239
>PRK12740 elongation factor G; Reviewed
Probab=99.30 E-value=1.1e-10 Score=94.90 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=65.1
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...|++.....+.++++.+++|||||+..+...+..+++.+|++++|+|++........ ..+..... .++|+++|
T Consensus 44 rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~-~~~~~~~~----~~~p~iiv 118 (668)
T PRK12740 44 RGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTE-TVWRQAEK----YGVPRIIF 118 (668)
T ss_pred cCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHH-HHHHHHHH----cCCCEEEE
Confidence 34566666788889999999999999998888888899999999999999876554433 23333321 36899999
Q ss_pred EeCCCcCC
Q psy2161 90 GNKIDIFD 97 (155)
Q Consensus 90 ~nK~Dl~~ 97 (155)
+||+|+..
T Consensus 119 ~NK~D~~~ 126 (668)
T PRK12740 119 VNKMDRAG 126 (668)
T ss_pred EECCCCCC
Confidence 99999865
No 240
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=6.6e-11 Score=90.59 Aligned_cols=118 Identities=17% Similarity=0.179 Sum_probs=73.0
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~ 96 (155)
...++.++.++.+|||||++.|..........+|++++|+|++..... .....+..+.. .++|. ++++||+|+.
T Consensus 67 ~~~~~~~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~----~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ----VGVPYIVVFLNKCDMV 141 (394)
T ss_pred EEEEcCCCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEecccC
Confidence 344445668999999999999987777777889999999999863222 22233333321 14565 5789999986
Q ss_pred CcCC-H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHh
Q psy2161 97 DAAS-E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLAN 152 (155)
Q Consensus 97 ~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~ 152 (155)
+... . +++...+...+ .....++++++||++|. ++.++++.+.+
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 142 DDEELLELVEMEVRELLSEYD------------FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred CHHHHHHHHHHHHHHHHHhcC------------CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 4211 1 12333333211 11124789999999875 24455555543
No 241
>PRK12735 elongation factor Tu; Reviewed
Probab=99.28 E-value=1.2e-10 Score=89.32 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=76.5
Q ss_pred eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcCC
Q psy2161 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIFD 97 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~~ 97 (155)
..++.++.++.|+||||++.|.......+..+|++++|+|+..... ......+..+. . .++|.+ +++||+|+.+
T Consensus 68 ~~~~~~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~-~---~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 68 VEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMVD 142 (396)
T ss_pred eEEcCCCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEEecCCcc
Confidence 3445567899999999999888777777889999999999976322 22223333332 1 256755 6799999864
Q ss_pred cC-CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhc
Q psy2161 98 AA-SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYI 154 (155)
Q Consensus 98 ~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i 154 (155)
.. ..+ ++...+...+ ....+.+++++||++|. ++.++++.|...+
T Consensus 143 ~~~~~~~~~~ei~~~l~~~~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 143 DEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred hHHHHHHHHHHHHHHHHHcC------------CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11 111 2333332211 11125789999999984 5677887776543
No 242
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.27 E-value=1.6e-10 Score=91.23 Aligned_cols=75 Identities=21% Similarity=0.239 Sum_probs=57.0
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
...++++++++++|||||+..|......+++.+|++++|+|+++.-. .....++. .... .++|+++++||+|+..
T Consensus 72 ~~~~~~~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 72 VMQFPYRDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred EEEEeeCCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence 46677889999999999999888877778899999999999976421 22233333 3222 4689999999999854
No 243
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.27 E-value=5.8e-11 Score=86.40 Aligned_cols=89 Identities=24% Similarity=0.306 Sum_probs=64.3
Q ss_pred ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
....++++++++++|||||+..|......+++.+|++++|+|+++.... ....++... . ..++|+++++||+|+.
T Consensus 62 ~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~ 136 (267)
T cd04169 62 SVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDRE 136 (267)
T ss_pred EEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccC
Confidence 3557888899999999999999888777789999999999999865332 222333322 2 2368999999999986
Q ss_pred CcCC---HHHHHhhhcc
Q psy2161 97 DAAS---EDEVRHFFGL 110 (155)
Q Consensus 97 ~~~~---~~~i~~~~~~ 110 (155)
.... .+++.+.++.
T Consensus 137 ~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 137 GRDPLELLDEIEEELGI 153 (267)
T ss_pred CCCHHHHHHHHHHHHCC
Confidence 5332 3455555543
No 244
>KOG1423|consensus
Probab=99.27 E-value=1.2e-10 Score=84.45 Aligned_cols=140 Identities=21% Similarity=0.207 Sum_probs=81.6
Q ss_pred cccCCCCCceeEEEECCEEEEEEEcCCChh------h------HHhHHhhcCCCCEEEEEEECCCCCch--HHHHHHHHH
Q psy2161 9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ------A------RRVWRDYFPAVDAIVFIIDASDRSRF--PESKYELDS 74 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~------~------~~~~~~~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~ 74 (155)
...+|..-....+..+.+++.|+||||... + .....+.+..||.+++|+|++++... ..+.+.+..
T Consensus 103 K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ 182 (379)
T KOG1423|consen 103 KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE 182 (379)
T ss_pred cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH
Confidence 344555555666777779999999999421 1 12234557789999999999864332 233344444
Q ss_pred HHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccCCCcccc------------cccccC-ccEEEEEeeeccC
Q psy2161 75 LLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTS------------REILQM-RPIELFMCSVLKR 140 (155)
Q Consensus 75 ~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~------------~~~~~~-~~~~~~~~Sa~~~ 140 (155)
. ..+|-++|+||.|.... ...-.....+..-.+...+.+.. .....- ..-.+|.+||++|
T Consensus 183 y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G 256 (379)
T KOG1423|consen 183 Y------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYG 256 (379)
T ss_pred H------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccc
Confidence 4 36899999999996431 11111111111111110011100 000111 1224899999999
Q ss_pred CChHHHHHHHHhhc
Q psy2161 141 QGFGNGFRWLANYI 154 (155)
Q Consensus 141 ~~i~~~~~~l~~~i 154 (155)
+||+++.+||..+.
T Consensus 257 ~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 257 EGIKDLKQYLMSQA 270 (379)
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999998764
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.26 E-value=9.5e-11 Score=90.90 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=76.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch---HHHHHHHHHHHhCCCCCCCc-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDSLLADDALTDVP- 85 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~---~~~~~~l~~~~~~~~~~~~p- 85 (155)
|+......++++++.++++||||+..|.......+..+|++++|+|++... .+ ...+..+... .. .++|
T Consensus 72 Tid~~~~~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~ 147 (446)
T PTZ00141 72 TIDIALWKFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQ 147 (446)
T ss_pred eEEeeeEEEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCe
Confidence 333345667778899999999999999988888899999999999997632 01 1122222222 11 2455
Q ss_pred EEEEEeCCCcCC----cCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 86 ILILGNKIDIFD----AAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 86 iilv~nK~Dl~~----~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
+++++||+|... ... ..++...+...+ +...+++++++||.+|.|+.+
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence 779999999532 111 223333333211 122358899999999999864
No 246
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=1e-12 Score=89.69 Aligned_cols=108 Identities=23% Similarity=0.398 Sum_probs=65.4
Q ss_pred CCCCCCCcccCCCCCceeEEEE---CCEEEEEEEcCCChhhHHhHHh---hcCCCCEEEEEEECCC-CCchHHHHHHHHH
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARRVWRD---YFPAVDAIVFIIDASD-RSRFPESKYELDS 74 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~---~~~~~~~~Dt~G~~~~~~~~~~---~~~~ad~ii~v~D~~~-~~~~~~~~~~l~~ 74 (155)
|.+|....+.+.+..+ ..+.+ .+..+.++|+||+.+.+..... +...+.+||||+|++. +....++...|-+
T Consensus 23 L~~~~~~~T~tS~e~n-~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~ 101 (181)
T PF09439_consen 23 LVNGKTVPTVTSMENN-IAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYD 101 (181)
T ss_dssp HHHSS---B---SSEE-EECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHH
T ss_pred HhcCCcCCeeccccCC-ceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHH
Confidence 3455556666666333 23333 3478999999999987764443 4889999999999974 3445556666666
Q ss_pred HHhCC--CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 75 LLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 75 ~~~~~--~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
++... ....+|+++++||+|+....+...+...++.
T Consensus 102 iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~ 139 (181)
T PF09439_consen 102 ILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEK 139 (181)
T ss_dssp HHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHH
T ss_pred HHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHH
Confidence 65332 2357899999999999887777777766654
No 247
>PRK13768 GTPase; Provisional
Probab=99.26 E-value=3.3e-11 Score=87.10 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=74.9
Q ss_pred EEEEEEEcCCChhh---HHhHHhhcCC-----CCEEEEEEECCCCCchHHH-H-HHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 26 IVFTTHDLGGHVQA---RRVWRDYFPA-----VDAIVFIIDASDRSRFPES-K-YELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~---~~~~~~~~~~-----ad~ii~v~D~~~~~~~~~~-~-~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
..+.+||+||+.+. +..++.+++. ++++++++|++...+.... . .|+..... ...++|+++|+||+|+
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~--~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ--LRLGLPQIPVLNKADL 174 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH--HHcCCCEEEEEEhHhh
Confidence 47899999998663 4455444443 8999999999754333222 1 22221111 1136899999999998
Q ss_pred CCcCCHHHHHhhhcc----------cCccCCCccc-ccccccC--ccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 96 FDAASEDEVRHFFGL----------YGLTTGKEFT-SREILQM--RPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 96 ~~~~~~~~i~~~~~~----------~~~~~~~~~~-~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.+....+.....+.. .....+.... +...+.. ...+++++||+++.|++++.+++.+.++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 764333333333321 0000000000 0011111 2247899999999999999999988763
No 248
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.25 E-value=6.1e-11 Score=92.62 Aligned_cols=119 Identities=20% Similarity=0.181 Sum_probs=73.7
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-HHHHHHhCCCCCCCcEEEEEe
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-~l~~~~~~~~~~~~piilv~n 91 (155)
|+......++.++.++.|+||||+..|.......++.+|++++|+|++....-..... .+...+ ...|+++++|
T Consensus 94 Tid~~~~~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-----g~~~iIvvvN 168 (474)
T PRK05124 94 TIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-----GIKHLVVAVN 168 (474)
T ss_pred CeEeeEEEeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-----CCCceEEEEE
Confidence 3334455667778999999999999887666666899999999999975321111111 111221 1358999999
Q ss_pred CCCcCCcC--CHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHH
Q psy2161 92 KIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 92 K~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~ 146 (155)
|+|+.+.. ...++...+... ..... ....+++++||++|.|+.++
T Consensus 169 KiD~~~~~~~~~~~i~~~l~~~----------~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 169 KMDLVDYSEEVFERIREDYLTF----------AEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred eeccccchhHHHHHHHHHHHHH----------HHhcCCCCCceEEEEEeecCCCcccc
Confidence 99986411 112222222110 00011 13468999999999998764
No 249
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.24 E-value=2.2e-10 Score=93.32 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.+++.++++|||||+..+...+..+++.+|++++|+|+++....... .++..+. ..++|+++++||
T Consensus 62 ti~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~~~p~ivviNK 136 (689)
T TIGR00484 62 TITSAATTVFWKGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RYEVPRIAFVNK 136 (689)
T ss_pred CEecceEEEEECCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----HcCCCEEEEEEC
Confidence 34344678888999999999999998888899999999999999999875444322 2333332 135899999999
Q ss_pred CCcCC
Q psy2161 93 IDIFD 97 (155)
Q Consensus 93 ~Dl~~ 97 (155)
+|+.+
T Consensus 137 ~D~~~ 141 (689)
T TIGR00484 137 MDKTG 141 (689)
T ss_pred CCCCC
Confidence 99875
No 250
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.23 E-value=3.4e-10 Score=86.10 Aligned_cols=134 Identities=15% Similarity=0.128 Sum_probs=89.7
Q ss_pred CCCCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCChh----------hH-HhHHhhcCCCCEEEEEEECCCCCchH
Q psy2161 2 LKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ----------AR-RVWRDYFPAVDAIVFIIDASDRSRFP 66 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~~----------~~-~~~~~~~~~ad~ii~v~D~~~~~~~~ 66 (155)
|.+++.....|.-|.+ ...+++++.++.++||+|-++ |. ......+..|+++++|+|++.+-+-+
T Consensus 198 ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~q 277 (444)
T COG1160 198 ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQ 277 (444)
T ss_pred hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHH
Confidence 4556666666666664 567778899999999999543 11 12344577899999999998764433
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 67 ESKYELDSLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
.. .....+. ..+.++++|.||+|+.+. ...++....+... -..-...+++.+||++|.++.
T Consensus 278 D~-~ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~------------l~~l~~a~i~~iSA~~~~~i~ 340 (444)
T COG1160 278 DL-RIAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRK------------LPFLDFAPIVFISALTGQGLD 340 (444)
T ss_pred HH-HHHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHH------------hccccCCeEEEEEecCCCChH
Confidence 32 2333332 236899999999998664 3444443333320 011234578999999999999
Q ss_pred HHHHHHHh
Q psy2161 145 NGFRWLAN 152 (155)
Q Consensus 145 ~~~~~l~~ 152 (155)
.+++.+.+
T Consensus 341 ~l~~~i~~ 348 (444)
T COG1160 341 KLFEAIKE 348 (444)
T ss_pred HHHHHHHH
Confidence 99998765
No 251
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.23 E-value=1e-10 Score=76.81 Aligned_cols=99 Identities=20% Similarity=0.319 Sum_probs=70.4
Q ss_pred EEEEcCCC----hhhHHhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC-CcCCHH
Q psy2161 29 TTHDLGGH----VQARRVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDALTDVPILILGNKIDIF-DAASED 102 (155)
Q Consensus 29 ~~~Dt~G~----~~~~~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~ 102 (155)
.++||||. +.+.........+||+|+++.|++++.+ |... +... -++|++-|+||+|+. +....+
T Consensus 39 ~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~---fa~~------f~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 39 NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPG---FASM------FNKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCch---hhcc------cCCCEEEEEECccCccchhhHH
Confidence 45999994 4444444555669999999999998643 3221 1111 258999999999998 344556
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
...+.+... ... .++++|+.+|+|++++.++|.+
T Consensus 110 ~a~~~L~~a--------------G~~--~if~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 110 RAKKWLKNA--------------GVK--EIFEVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred HHHHHHHHc--------------CCC--CeEEEECCCCcCHHHHHHHHhC
Confidence 666666652 223 4699999999999999999863
No 252
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.23 E-value=3.2e-10 Score=82.62 Aligned_cols=93 Identities=19% Similarity=0.172 Sum_probs=66.7
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.+++.++++|||||+..+...+..+++.+|++++|+|+++...-. ....+.... ..++|+++++||
T Consensus 51 ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~----~~~~p~ivviNK 125 (270)
T cd01886 51 TIQSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQAD----RYNVPRIAFVNK 125 (270)
T ss_pred CeeccEEEEEECCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHH----HcCCCEEEEEEC
Confidence 444446788889999999999999999999999999999999999997643222 223333332 236899999999
Q ss_pred CCcCCcC---CHHHHHhhhcc
Q psy2161 93 IDIFDAA---SEDEVRHFFGL 110 (155)
Q Consensus 93 ~Dl~~~~---~~~~i~~~~~~ 110 (155)
+|+.+.. ...++.+.++.
T Consensus 126 ~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 126 MDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred CCCCCCCHHHHHHHHHHHhCC
Confidence 9986521 23455555443
No 253
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.21 E-value=9.4e-11 Score=81.19 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=65.0
Q ss_pred hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccCccC
Q psy2161 37 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTT 115 (155)
Q Consensus 37 ~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~~~~ 115 (155)
..++.++..+++++|++++|+|++++..- |...+.. ...++|+++|+||+|+... .....+........
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~--- 91 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA--- 91 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH---
Confidence 33688999999999999999999875421 1112211 1246899999999998642 22222322220000
Q ss_pred CCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 116 GKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..........++.+||++|.|++++++++.+.+
T Consensus 92 ------~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 92 ------AAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred ------HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000111113589999999999999999998754
No 254
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.21 E-value=1.7e-10 Score=84.05 Aligned_cols=83 Identities=18% Similarity=0.118 Sum_probs=63.6
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
.+|+......+.++++++++|||||...+...+..+++.+|++++|+|+++........ .+..+. ..++|.++++
T Consensus 49 ~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~~----~~~~p~iivv 123 (268)
T cd04170 49 KMSISTSVAPLEWKGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEK-LWEFAD----EAGIPRIIFI 123 (268)
T ss_pred cccccceeEEEEECCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHH----HcCCCEEEEE
Confidence 34555567788888999999999999988888889999999999999998765443222 222222 2368999999
Q ss_pred eCCCcCCc
Q psy2161 91 NKIDIFDA 98 (155)
Q Consensus 91 nK~Dl~~~ 98 (155)
||+|+...
T Consensus 124 NK~D~~~~ 131 (268)
T cd04170 124 NKMDRERA 131 (268)
T ss_pred ECCccCCC
Confidence 99998753
No 255
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.20 E-value=4.6e-11 Score=80.18 Aligned_cols=93 Identities=18% Similarity=0.179 Sum_probs=61.5
Q ss_pred HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcc
Q psy2161 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 119 (155)
Q Consensus 40 ~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 119 (155)
+.++++..+++|++++|+|++++..... .. +...+. ..++|+++|+||+|+.+.............
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~--------- 68 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RK-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKES--------- 68 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HH-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHh---------
Confidence 5678888999999999999987543322 11 222221 135899999999998532111111111111
Q ss_pred cccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 120 TSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 120 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+..++.+||++|.|++++++.+.+.+
T Consensus 69 --------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 --------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred --------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 234689999999999999999998754
No 256
>PRK09866 hypothetical protein; Provisional
Probab=99.19 E-value=7.1e-10 Score=88.01 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=74.4
Q ss_pred EEEEEEEcCCChh-----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC-
Q psy2161 26 IVFTTHDLGGHVQ-----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA- 99 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~- 99 (155)
.++.|.||||-.. ........+..||+|+||+|++...+... ..+.+.++... .+.|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 7899999999633 23455668999999999999987544333 22333332221 135999999999985421
Q ss_pred -CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 100 -SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 100 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..+.+....... + .......-.++++||+.|.|++++++.+..
T Consensus 307 ddkE~Lle~V~~~---------L-~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGT---------L-MKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHH---------H-HhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 244444443210 0 001112347999999999999999999876
No 257
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.18 E-value=3.9e-10 Score=91.11 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=73.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+++++.++.|+||||++.|.......+..+|++++|+|++....-.. ...+..+ ... ..+|+++++||
T Consensus 91 Tid~~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~-~~~--~~~~iivvvNK 166 (632)
T PRK05506 91 TIDVAYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIA-SLL--GIRHVVLAVNK 166 (632)
T ss_pred CceeeeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHH-HHh--CCCeEEEEEEe
Confidence 3334456677788999999999999887777777889999999999975422111 1111111 111 23689999999
Q ss_pred CCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 93 IDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 93 ~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
+|+.+ ....+++...+... .........+++++||++|.|+.+
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~----------~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAF----------AAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cccccchhHHHHHHHHHHHHH----------HHHcCCCCccEEEEecccCCCccc
Confidence 99864 11112222222110 000111345789999999999874
No 258
>CHL00071 tufA elongation factor Tu
Probab=99.17 E-value=7.3e-10 Score=85.27 Aligned_cols=108 Identities=21% Similarity=0.247 Sum_probs=70.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
...++.++.++.+.||||+..|.......+..+|++++|+|++.... ......+..+. . .++| +++++||+|+.
T Consensus 67 ~~~~~~~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~-~---~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 67 HVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAK-Q---VGVPNIVVFLNKEDQV 141 (409)
T ss_pred EEEEccCCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHH-H---cCCCEEEEEEEccCCC
Confidence 34555677899999999999888777778889999999999975322 22223333332 1 2567 77899999986
Q ss_pred CcCC-H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161 97 DAAS-E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142 (155)
Q Consensus 97 ~~~~-~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 142 (155)
+... . .++...+...+ +.....+++.+||++|.|
T Consensus 142 ~~~~~~~~~~~~l~~~l~~~~------------~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 142 DDEELLELVELEVRELLSKYD------------FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CHHHHHHHHHHHHHHHHHHhC------------CCCCcceEEEcchhhccc
Confidence 4211 1 12333332211 112347899999999874
No 259
>PRK00049 elongation factor Tu; Reviewed
Probab=99.16 E-value=1.1e-09 Score=83.95 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=76.6
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~ 96 (155)
...++.++.++.+.||||+..|.......+..+|++++|+|++.... ......+..+. . .++|.+ +++||+|+.
T Consensus 67 ~~~~~~~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~-~---~g~p~iiVvvNK~D~~ 141 (396)
T PRK00049 67 HVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR-Q---VGVPYIVVFLNKCDMV 141 (396)
T ss_pred EEEEcCCCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHH-H---cCCCEEEEEEeecCCc
Confidence 34455567899999999999888777777899999999999976422 22223333332 1 257875 689999986
Q ss_pred CcC-CH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhh
Q psy2161 97 DAA-SE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANY 153 (155)
Q Consensus 97 ~~~-~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 153 (155)
+.. .. .++...+...+ +...+.+++.+||++|. ++..+++.|...
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 142 DDEELLELVEMEVRELLSKYD------------FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred chHHHHHHHHHHHHHHHHhcC------------CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 411 11 12333332211 11235789999999875 456777777654
No 260
>KOG0099|consensus
Probab=99.14 E-value=2.6e-10 Score=81.26 Aligned_cols=144 Identities=19% Similarity=0.313 Sum_probs=102.7
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCCC
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADDA 80 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~~ 80 (155)
+-|.|.....+.++.+.|.++|.|||+..+..|-.++.+..+||||+..++ .+.+.+...++..+.+...
T Consensus 187 vlTsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRw 266 (379)
T KOG0099|consen 187 VLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRW 266 (379)
T ss_pred hhccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhH
Confidence 346677788888899999999999999999999999999999999997654 3445667788888888888
Q ss_pred CCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCc---cC----C----------Cccc--cccc---cc---CccEEE
Q psy2161 81 LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGL---TT----G----------KEFT--SREI---LQ---MRPIEL 132 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~---~~----~----------~~~~--~~~~---~~---~~~~~~ 132 (155)
+..+.+|+.+||.|+.. ......+..++..+.- +. . |... .+.. .+ .+-+..
T Consensus 267 L~tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYp 346 (379)
T KOG0099|consen 267 LRTISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYP 346 (379)
T ss_pred HhhhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceeccc
Confidence 88899999999999864 2234445555543311 10 0 0000 0001 11 123456
Q ss_pred EEeeeccCCChHHHHHHHHhhc
Q psy2161 133 FMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 133 ~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.++|.+.+||..+|.-+.+.|
T Consensus 347 HFTcAvDTenIrrVFnDcrdiI 368 (379)
T KOG0099|consen 347 HFTCAVDTENIRRVFNDCRDII 368 (379)
T ss_pred ceeEeechHHHHHHHHHHHHHH
Confidence 7899999999999998766543
No 261
>PLN03126 Elongation factor Tu; Provisional
Probab=99.14 E-value=1.4e-09 Score=85.04 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=71.1
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
...++.++.++.++|+||++.|.......+..+|++++|+|+.....- ....++..+. . .++| +++++||+|+.
T Consensus 136 ~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~-~---~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 136 TVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAK-Q---VGVPNMVVFLNKQDQV 210 (478)
T ss_pred EEEEecCCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHH-H---cCCCeEEEEEeccccc
Confidence 344566789999999999999988888888899999999999864322 2233333332 1 2567 78899999986
Q ss_pred CcC-CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161 97 DAA-SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142 (155)
Q Consensus 97 ~~~-~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 142 (155)
+.. ..+ ++...+...+ +.....+++.+||.+|.|
T Consensus 211 ~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 211 DDEELLELVELEVRELLSSYE------------FPGDDIPIISGSALLALE 249 (478)
T ss_pred CHHHHHHHHHHHHHHHHHhcC------------CCcCcceEEEEEcccccc
Confidence 411 112 2222222211 122467899999998854
No 262
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.14 E-value=4.3e-10 Score=79.94 Aligned_cols=131 Identities=13% Similarity=0.216 Sum_probs=75.9
Q ss_pred ccCCCCCceeEEEEC-CEEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCchHH---HHHHHHHHHhCCC
Q psy2161 10 HMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSRFPE---SKYELDSLLADDA 80 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~-~~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~~~~---~~~~l~~~~~~~~ 80 (155)
..||..++...+... +..+++||+||+..+.. .....+++++++|||+|+.+.+-.+. ....+..+.+.
T Consensus 31 L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-- 108 (232)
T PF04670_consen 31 LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-- 108 (232)
T ss_dssp -----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH--
T ss_pred cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh--
Confidence 357888887777755 48999999999976533 36778999999999999985443222 23334444332
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHH----hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVR----HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.++..+.++++|+|+.......++. +.+... ........+.++.+|..+ ..+-+++..+++.
T Consensus 109 sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~----------~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 109 SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDE----------LEDLGIEDITFFLTSIWD-ESLYEAWSKIVQK 174 (232)
T ss_dssp STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHH----------HHHTT-TSEEEEEE-TTS-THHHHHHHHHHHT
T ss_pred CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHH----------hhhccccceEEEeccCcC-cHHHHHHHHHHHH
Confidence 2578999999999985422222221 111110 000111248899988887 5888888777654
No 263
>PLN03127 Elongation factor Tu; Provisional
Probab=99.13 E-value=1.7e-09 Score=83.99 Aligned_cols=125 Identities=18% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN 91 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n 91 (155)
|+......++.++.++.|.||||+..|..........+|++++|+|++.... ......+..+. . .++| +++++|
T Consensus 111 Ti~~~~~~~~~~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~-~---~gip~iIvviN 185 (447)
T PLN03127 111 TIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLAR-Q---VGVPSLVVFLN 185 (447)
T ss_pred eeeeeEEEEcCCCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHH-H---cCCCeEEEEEE
Confidence 4444455566677899999999999887766667778999999999875422 22222333332 1 2578 578899
Q ss_pred CCCcCCcC-CHHHHH----hhhcccCccCCCcccccccccCccEEEEEeeec---cCCC-------hHHHHHHHHhhc
Q psy2161 92 KIDIFDAA-SEDEVR----HFFGLYGLTTGKEFTSREILQMRPIELFMCSVL---KRQG-------FGNGFRWLANYI 154 (155)
Q Consensus 92 K~Dl~~~~-~~~~i~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i 154 (155)
|+|+.+.. ..+.+. +.+... .+....++++.+||. +|.| +.++++.+.+.+
T Consensus 186 KiDlv~~~~~~~~i~~~i~~~l~~~------------~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 186 KVDVVDDEELLELVEMELRELLSFY------------KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHh------------CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 99986411 111121 222110 011234678888775 5555 678888877654
No 264
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=79.88 Aligned_cols=125 Identities=19% Similarity=0.135 Sum_probs=86.6
Q ss_pred CCccc-CCCCCceeEEEECCEEEEEEEcCCChh----------hHH-hHHhhcCCCCEEEEEEECCCC--CchHHHHHHH
Q psy2161 7 TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARR-VWRDYFPAVDAIVFIIDASDR--SRFPESKYEL 72 (155)
Q Consensus 7 ~~~~~-pT~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~-~~~~~~~~ad~ii~v~D~~~~--~~~~~~~~~l 72 (155)
+.+|. +|.++++..+++++.++|++||||--. -++ ..-.++ +++|+|++|+|.. -+.+....++
T Consensus 195 vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~ 272 (346)
T COG1084 195 VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL--AGVILFLFDPSETCGYSLEEQISLL 272 (346)
T ss_pred cCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh--cCeEEEEEcCccccCCCHHHHHHHH
Confidence 44454 788889999999999999999999311 011 112222 6799999999754 4456667888
Q ss_pred HHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 73 DSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 73 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.++.... ..|+++|+||+|..+....+++...+... .......+++..+.+++.+.+.+..
T Consensus 273 ~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 273 EEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEE----------------GGEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred HHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhh----------------ccccccceeeeehhhHHHHHHHHHH
Confidence 8886433 38999999999987655555555544331 2234678888889988877665543
No 265
>PRK12739 elongation factor G; Reviewed
Probab=99.12 E-value=3.2e-09 Score=86.62 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=61.8
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
-|+......+.+++.+++++||||+..+...+...++.+|++++|+|++....-.. ...+..... .++|+++++|
T Consensus 59 iti~~~~~~~~~~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~----~~~p~iv~iN 133 (691)
T PRK12739 59 ITITSAATTCFWKGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK----YGVPRIVFVN 133 (691)
T ss_pred CCccceeEEEEECCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH----cCCCEEEEEE
Confidence 34444567788899999999999999998889999999999999999976533222 223333321 3589999999
Q ss_pred CCCcCC
Q psy2161 92 KIDIFD 97 (155)
Q Consensus 92 K~Dl~~ 97 (155)
|+|+.+
T Consensus 134 K~D~~~ 139 (691)
T PRK12739 134 KMDRIG 139 (691)
T ss_pred CCCCCC
Confidence 999875
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.1e-10 Score=85.27 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=79.9
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch-----HHHHHHHHHHHhCCCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF-----PESKYELDSLLADDALTDV 84 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~-----~~~~~~l~~~~~~~~~~~~ 84 (155)
|+......++.+.+.|++.|+||++.|...+-.-+.+||+.|+|+|+++.+ .| ..-...+...+ .-.
T Consensus 72 Ti~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-----Gi~ 146 (428)
T COG5256 72 TIDVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-----GIK 146 (428)
T ss_pred EEEEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-----CCc
Confidence 444556777778899999999999999998888899999999999997642 11 11122333332 345
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCccccccc--ccCccEEEEEeeeccCCChHH
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREI--LQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
.++++.||+|+.+ +.-.+++.+.+.. ++.. +...+..+++|||..|.|+.+
T Consensus 147 ~lIVavNKMD~v~wde~rf~ei~~~v~~----------l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 147 QLIVAVNKMDLVSWDEERFEEIVSEVSK----------LLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred eEEEEEEcccccccCHHHHHHHHHHHHH----------HHHHcCCCccCCeEEecccccCCcccc
Confidence 7999999999875 2122233332221 0111 233468899999999999753
No 267
>KOG1707|consensus
Probab=99.08 E-value=1.6e-10 Score=89.77 Aligned_cols=134 Identities=15% Similarity=0.191 Sum_probs=95.0
Q ss_pred CCCCcccCCCCCc---eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCC-
Q psy2161 5 DRTAQHMPTLHPT---SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADD- 79 (155)
Q Consensus 5 ~~~~~~~pT~~~~---~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~- 79 (155)
+++.+.+|-.-.. ...+.-.++...+.|++....-+....+-++.||++.++|+.+++.+++.+ ..|+..+.+..
T Consensus 32 eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~ 111 (625)
T KOG1707|consen 32 EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFG 111 (625)
T ss_pred hhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccC
Confidence 4445555554442 233333457799999998777677777889999999999999999999888 58999886433
Q ss_pred CCCCCcEEEEEeCCCcCCcCCH--HH-HHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 80 ALTDVPILILGNKIDIFDAASE--DE-VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~~~--~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...+.|+|||+||.|+.+..+. +. +.-.+..+ ..--.+++|||++-.|+.|+|.+..+.
T Consensus 112 ~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f---------------~EiEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 112 DYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAF---------------AEIETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred CCccCCEEEEeeccCCccccccchhHHHHHHHHHh---------------HHHHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 2257899999999998763322 22 22222211 112258999999999999999987764
No 268
>PRK12289 GTPase RsgA; Reviewed
Probab=99.06 E-value=8.9e-10 Score=82.93 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=62.7
Q ss_pred hHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccc
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 120 (155)
+.+..++++|.+++|+|+.++. ....+..|+.... ..++|+++|+||+|+.+......+...+..
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~---------- 147 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQ---------- 147 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHh----------
Confidence 3445588999999999998765 3344556665552 246899999999998532111222222222
Q ss_pred ccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 121 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.++.++.+||++|.|++++++++..
T Consensus 148 -------~g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 148 -------WGYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred -------cCCeEEEEEcCCCCCHHHHhhhhcc
Confidence 3457899999999999999998865
No 269
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.04 E-value=6.8e-10 Score=82.03 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=81.2
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH--HHHHHHHHhCCCCCCCcEEEE
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES--KYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~--~~~l~~~~~~~~~~~~piilv 89 (155)
-|+.+..+.+...+.+|.+.||||++.|...+-.-...||+.|+++|+... -++.. +..+..++ .-..+++.
T Consensus 72 ITIDVAYRyFsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvA 145 (431)
T COG2895 72 ITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVA 145 (431)
T ss_pred ceEEEEeeecccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEE
Confidence 456666777777889999999999999999888889999999999999531 11111 23333333 34689999
Q ss_pred EeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChH
Q psy2161 90 GNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 90 ~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
.||+||.+ +...++|...+..+ ...+......++++||..|+|+-
T Consensus 146 VNKmDLvdy~e~~F~~I~~dy~~f----------a~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 146 VNKMDLVDYSEEVFEAIVADYLAF----------AAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred EeeecccccCHHHHHHHHHHHHHH----------HHHcCCCcceEEechhccCCccc
Confidence 99999976 32333333322211 12244455689999999999964
No 270
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.02 E-value=2e-09 Score=79.25 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=79.2
Q ss_pred CCCCCceeEEEE-CCEEEEEEEcCCChh----hHHhHHhh---cCCCCEEEEEEECCCCCc---hHHHHHHHHHHHhC-C
Q psy2161 12 PTLHPTSEELSM-GDIVFTTHDLGGHVQ----ARRVWRDY---FPAVDAIVFIIDASDRSR---FPESKYELDSLLAD-D 79 (155)
Q Consensus 12 pT~~~~~~~~~~-~~~~~~~~Dt~G~~~----~~~~~~~~---~~~ad~ii~v~D~~~~~~---~~~~~~~l~~~~~~-~ 79 (155)
+|+-++...+.+ .+..|.+.|.||--. -..+...| +..+.++++|+|++..+. .+.......++.++ .
T Consensus 192 TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~ 271 (369)
T COG0536 192 TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP 271 (369)
T ss_pred ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH
Confidence 444445444444 457899999998532 12222222 558999999999986443 45555555555443 3
Q ss_pred CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEE-EeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELF-MCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.++|.++|+||+|+.. ....+...+.+... ..+... .+||.++.|++++...+.+.+
T Consensus 272 ~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~----------------~~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 272 KLAEKPRIVVLNKIDLPLDEEELEELKKALAEA----------------LGWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred HhccCceEEEEeccCCCcCHHHHHHHHHHHHHh----------------cCCCcceeeehhcccCHHHHHHHHHHHH
Confidence 556899999999999643 22333333333321 122222 299999999999998887654
No 271
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.00 E-value=1.5e-08 Score=75.40 Aligned_cols=55 Identities=20% Similarity=0.169 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH-HHHhhcC
Q psy2161 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR-WLANYID 155 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~-~l~~~i~ 155 (155)
.+|+++|+||.|+.+ .++....+.. ......++.+||+.+.+++++.+ .+.+++|
T Consensus 214 ~KPvI~VlNK~Dl~~---~~~~~~~l~~---------------~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 214 SKPMVIAANKADIPD---AENNISKLRL---------------KYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred CCcEEEEEEHHHccC---hHHHHHHHHh---------------hCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 579999999999743 2222222211 11235789999999999999997 6887764
No 272
>PRK00007 elongation factor G; Reviewed
Probab=98.98 E-value=3.1e-08 Score=80.95 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=59.4
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.+++.++++.||||+..|.......++.+|++++|+|+...-.-.. ...+..... .++|.++++||
T Consensus 62 ti~~~~~~~~~~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK 136 (693)
T PRK00007 62 TITSAATTCFWKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNK 136 (693)
T ss_pred CEeccEEEEEECCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEEC
Confidence 3334467788889999999999999887777888899999999999875433322 222333322 25799999999
Q ss_pred CCcCC
Q psy2161 93 IDIFD 97 (155)
Q Consensus 93 ~Dl~~ 97 (155)
+|+.+
T Consensus 137 ~D~~~ 141 (693)
T PRK00007 137 MDRTG 141 (693)
T ss_pred CCCCC
Confidence 99875
No 273
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.97 E-value=5.9e-09 Score=79.65 Aligned_cols=126 Identities=18% Similarity=0.265 Sum_probs=89.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
...+.|+++++++.||||+-.|-.-....++=+|++++++|+... .+...+-.+.+.+.. +.+-|+|.||+|.++
T Consensus 60 nTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~ 134 (603)
T COG1217 60 NTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALAL----GLKPIVVINKIDRPD 134 (603)
T ss_pred cceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHc----CCCcEEEEeCCCCCC
Confidence 567888999999999999999988888889999999999999762 233334445555432 466778899999988
Q ss_pred cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC----------ChHHHHHHHHhhcC
Q psy2161 98 AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ----------GFGNGFRWLANYID 155 (155)
Q Consensus 98 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~i~ 155 (155)
.-+..-+.+.+.++- .+...-....++++..|+..|. +...+|+.+.+.+|
T Consensus 135 Arp~~Vvd~vfDLf~-------~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 135 ARPDEVVDEVFDLFV-------ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CCHHHHHHHHHHHHH-------HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 666555555554420 0001112256789999998874 47788888887664
No 274
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.96 E-value=5.4e-09 Score=70.26 Aligned_cols=89 Identities=16% Similarity=0.220 Sum_probs=56.5
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL 125 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (155)
.+++||++++|+|++++.... ...+.+.+... ..++|+++|+||+|+.+ ..++...+..+ .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~~-~~~~p~ilVlNKiDl~~---~~~~~~~~~~~-------------~ 65 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKKE-KPHKHLIFVLNKCDLVP---TWVTARWVKIL-------------S 65 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc--CHHHHHHHHhc-cCCCCEEEEEEchhcCC---HHHHHHHHHHH-------------h
Confidence 367899999999998763221 12233333321 23589999999999853 22222222221 0
Q ss_pred cCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 126 QMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.......+.+||+.+.|++++++++.+.
T Consensus 66 ~~~~~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 66 KEYPTIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred cCCcEEEEEeeccccccHHHHHHHHHHH
Confidence 0122346889999999999999998754
No 275
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=4.7e-09 Score=77.24 Aligned_cols=89 Identities=15% Similarity=0.080 Sum_probs=63.9
Q ss_pred HHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccc
Q psy2161 43 WRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 121 (155)
.+..++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+. .. .......
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~--~~-~~~~~~~----------- 133 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD--EE-EELELVE----------- 133 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh--HH-HHHHHHH-----------
Confidence 344588999999999999887 77777777776642 36899999999998643 11 1111111
Q ss_pred cccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 122 REILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 122 ~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+...+..++.+||+++.|+++++.++..
T Consensus 134 ---~~~~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 134 ---ALALGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred ---HHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence 1113457899999999999999988764
No 276
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.94 E-value=4.2e-09 Score=71.79 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=62.5
Q ss_pred cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161 33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111 (155)
Q Consensus 33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 111 (155)
.||+.. ........+++||++++|+|++.+..... ..++... .++|+++|+||+|+.+........+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~------~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL------GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh------cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 356543 34455677889999999999987643321 1122211 35799999999998532111111122221
Q ss_pred CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....++.+||+++.|++++.+.+...+
T Consensus 74 ----------------~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 ----------------KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ----------------cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123578999999999999999887653
No 277
>PRK12288 GTPase RsgA; Reviewed
Probab=98.94 E-value=6.2e-09 Score=78.34 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=64.3
Q ss_pred cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc
Q psy2161 47 FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ 126 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (155)
..++|.+++|++.+...++..+..|+.... ..++|.++|+||+|+.+......+...... +.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--------------y~ 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--------------YR 179 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--------------HH
Confidence 467999999999887788888888876542 246899999999999653222222222221 12
Q ss_pred CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..++.++.+||+++.|++++++++...
T Consensus 180 ~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 234689999999999999999998753
No 278
>PRK00098 GTPase RsgA; Reviewed
Probab=98.91 E-value=5.6e-09 Score=77.23 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=60.0
Q ss_pred cCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc
Q psy2161 47 FPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL 125 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (155)
.+++|++++|+|++++..+... ..|+..+.. .++|+++|+||+|+.+. .......... +
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~--~~~~~~~~~~--------------~ 137 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD--LEEARELLAL--------------Y 137 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC--HHHHHHHHHH--------------H
Confidence 5899999999999887665443 566665532 36899999999998531 1222111111 1
Q ss_pred cCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 126 QMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
...++.++.+||+++.|++++++++..
T Consensus 138 ~~~g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 138 RAIGYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred HHCCCeEEEEeCCCCccHHHHHhhccC
Confidence 112457899999999999999998754
No 279
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.91 E-value=4.6e-09 Score=79.60 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=66.2
Q ss_pred ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCcc
Q psy2161 36 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT 114 (155)
Q Consensus 36 ~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~ 114 (155)
++.|..+...+++.++++++|+|+.+.... |..++.+.. .++|+++|+||+|+.. ....+.+..++...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s-----~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~--- 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS-----LIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR--- 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC-----ccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH---
Confidence 567888999999999999999999764321 223332221 2679999999999864 33444444332210
Q ss_pred CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..........++.+||++|.|++++++.+.+
T Consensus 120 -------~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 120 -------AKELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred -------HHHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 0001111125889999999999999999865
No 280
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.4e-08 Score=74.47 Aligned_cols=113 Identities=17% Similarity=0.181 Sum_probs=81.5
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC----cCCH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD----AASE 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~----~~~~ 101 (155)
.++.|.|.||++-....+..-..=.|+.++|++++.+-.-...+.-|..+ ... .-+.++++-||+|+.. ....
T Consensus 86 R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIi--gik~iiIvQNKIDlV~~E~AlE~y 162 (415)
T COG5257 86 RRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EII--GIKNIIIVQNKIDLVSRERALENY 162 (415)
T ss_pred EEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhh--ccceEEEEecccceecHHHHHHHH
Confidence 68999999999977776665566678999999998643333333333222 111 2467999999999865 2345
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+++.++... --..+-+++++||..+.||+-+++++.+.|+
T Consensus 163 ~qIk~FvkG--------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 163 EQIKEFVKG--------------TVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHHHhcc--------------cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 566666554 2234568999999999999999999998875
No 281
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.89 E-value=3.1e-08 Score=72.68 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=42.3
Q ss_pred CCccc-CCCCCceeEEEECCEEEEEEEcCCChhh----H---HhHHhhcCCCCEEEEEEECCCCC
Q psy2161 7 TAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQA----R---RVWRDYFPAVDAIVFIIDASDRS 63 (155)
Q Consensus 7 ~~~~~-pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~---~~~~~~~~~ad~ii~v~D~~~~~ 63 (155)
..+|. +|..+....++|+|.++|+.|+||--.. + ...-...++||.+++|+|+..+.
T Consensus 90 va~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 90 VADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred ccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCCh
Confidence 44555 6777778899999999999999974322 1 12345678999999999997543
No 282
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.86 E-value=3.5e-08 Score=78.51 Aligned_cols=109 Identities=20% Similarity=0.247 Sum_probs=79.0
Q ss_pred ceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
....+.+++.++++.|.||.-+.. ...++|+. +.|+++-|+|+++.++--. .--+++. -+.|+++
T Consensus 41 keg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeRnLy---ltlQLlE----~g~p~il 113 (653)
T COG0370 41 KEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLIVNVVDATNLERNLY---LTLQLLE----LGIPMIL 113 (653)
T ss_pred EEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEEEEEcccchHHHHHH---HHHHHHH----cCCCeEE
Confidence 366777788999999999964422 23444444 5799999999987543322 2222321 1689999
Q ss_pred EEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 89 LGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 89 v~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
++|++|... .++.+.+.+.++. +++++||++|.|++++++.+.+
T Consensus 114 aLNm~D~A~~~Gi~ID~~~L~~~LGv--------------------PVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 114 ALNMIDEAKKRGIRIDIEKLSKLLGV--------------------PVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred EeccHhhHHhcCCcccHHHHHHHhCC--------------------CEEEEEeecCCCHHHHHHHHHH
Confidence 999999754 4566666666654 8999999999999999998865
No 283
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.85 E-value=1.7e-08 Score=73.92 Aligned_cols=96 Identities=23% Similarity=0.293 Sum_probs=62.8
Q ss_pred CCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccC
Q psy2161 34 GGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG 112 (155)
Q Consensus 34 ~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~ 112 (155)
||+.. ........++.||++++|+|+..+.+... ..+.+.+ .++|+++|+||+|+.+........+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~-- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE-- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH--
Confidence 67653 33445667889999999999987644322 2233333 25799999999998532111222222211
Q ss_pred ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+..++.+||+++.|++++.+.+.+.
T Consensus 76 ---------------~~~~vi~iSa~~~~gi~~L~~~i~~~ 101 (276)
T TIGR03596 76 ---------------KGIKALAINAKKGKGVKKIIKAAKKL 101 (276)
T ss_pred ---------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 12367899999999999998887654
No 284
>KOG0458|consensus
Probab=98.82 E-value=7.6e-09 Score=80.68 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=79.0
Q ss_pred CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHH--HHHHHHHHHhCCCCCCCcEEE
Q psy2161 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPE--SKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~--~~~~l~~~~~~~~~~~~piil 88 (155)
+.+....++.+...+++.|+||+..|.+.+..-...||+.++|+|++.. ..|+. ..+....+++.. .-..+++
T Consensus 243 m~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L--gi~qliv 320 (603)
T KOG0458|consen 243 MDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL--GISQLIV 320 (603)
T ss_pred EEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc--CcceEEE
Confidence 3334566666779999999999999999988889999999999999741 12211 112233343333 3567999
Q ss_pred EEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccc--cccCccEEEEEeeeccCCChH
Q psy2161 89 LGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSRE--ILQMRPIELFMCSVLKRQGFG 144 (155)
Q Consensus 89 v~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~ 144 (155)
++||+|+.+ +.--++|...+..+ +.. .+...++.|++||+.+|+|+-
T Consensus 321 aiNKmD~V~Wsq~RF~eIk~~l~~f---------L~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 321 AINKMDLVSWSQDRFEEIKNKLSSF---------LKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred EeecccccCccHHHHHHHHHHHHHH---------HHHhcCcccCCcceEecccccCCccc
Confidence 999999865 22223333333221 101 133456789999999999964
No 285
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=3.8e-08 Score=72.48 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=63.4
Q ss_pred cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161 33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111 (155)
Q Consensus 33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 111 (155)
.||+.. ........++.||++++|+|+..+.+... .++.+.+ .++|+++|+||+|+.+.........++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~- 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEE- 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHH-
Confidence 477653 23345566889999999999987644332 2334443 15899999999998532111222222221
Q ss_pred CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+..++.+||+++.|++++++.+.+.
T Consensus 79 ----------------~~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 79 ----------------QGIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred ----------------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 12467899999999999998887654
No 286
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.75 E-value=4.5e-08 Score=64.66 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=47.7
Q ss_pred hhcCCCCEEEEEEECCCCCchH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccc
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFP--ESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSR 122 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~--~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 122 (155)
..++.||++++|+|++++.+.. .+..++... . .++|+++|+||+|+.+........+.++.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~------------ 69 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----D-PRKKNILLLNKADLLTEEQRKAWAEYFKK------------ 69 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----c-CCCcEEEEEechhcCCHHHHHHHHHHHHh------------
Confidence 4478999999999998875543 223333222 1 46899999999998542222222233322
Q ss_pred ccccCccEEEEEeeeccCCC
Q psy2161 123 EILQMRPIELFMCSVLKRQG 142 (155)
Q Consensus 123 ~~~~~~~~~~~~~Sa~~~~~ 142 (155)
....++.+||+++.+
T Consensus 70 -----~~~~ii~iSa~~~~~ 84 (141)
T cd01857 70 -----EGIVVVFFSALKENA 84 (141)
T ss_pred -----cCCeEEEEEecCCCc
Confidence 224678889988764
No 287
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.73 E-value=9.2e-08 Score=78.50 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCCCCceeE----EEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 12 PTLHPTSEE----LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 12 pT~~~~~~~----~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
+|+...... ++.+++++++|||||+..|.......++.+|++++|+|+........ ...+....+ .+.|++
T Consensus 68 ~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~~----~~~p~i 142 (720)
T TIGR00490 68 ITINAANVSMVHEYEGNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQALK----ENVKPV 142 (720)
T ss_pred chhhcccceeEEeecCCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHHH----cCCCEE
Confidence 455543222 45567999999999999988888889999999999999976422222 122222221 256888
Q ss_pred EEEeCCCcCC
Q psy2161 88 ILGNKIDIFD 97 (155)
Q Consensus 88 lv~nK~Dl~~ 97 (155)
+++||+|...
T Consensus 143 vviNKiD~~~ 152 (720)
T TIGR00490 143 LFINKVDRLI 152 (720)
T ss_pred EEEEChhccc
Confidence 9999999753
No 288
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=9.1e-08 Score=64.16 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=52.4
Q ss_pred CEEEEEEECCCCCchHHHHHHHH-HHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCcc
Q psy2161 51 DAIVFIIDASDRSRFPESKYELD-SLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRP 129 (155)
Q Consensus 51 d~ii~v~D~~~~~~~~~~~~~l~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (155)
|++++|+|++++.+... .++. ..+. ..++|+++|+||+|+.+ ..++...+..+ .....
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~---~~~~~~~~~~~-------------~~~~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVP---KEVLRKWLAYL-------------RHSYP 59 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCC---HHHHHHHHHHH-------------HhhCC
Confidence 78999999988755532 2333 2222 23689999999999853 22222221110 00013
Q ss_pred EEEEEeeeccCCChHHHHHHHHh
Q psy2161 130 IELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 130 ~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..++.+||++|.|++++++.+.+
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~ 82 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTK 82 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHH
Confidence 46889999999999999998764
No 289
>KOG1144|consensus
Probab=98.71 E-value=9.2e-08 Score=76.76 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=75.5
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC---cCC
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFD---AAS 100 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~---~~~ 100 (155)
-+-++||||+++|..+......-||.+|+|+|+.. +++++.+ . +++ ..+.|+++.+||+|..- ..+
T Consensus 541 g~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~-lLR---~rktpFivALNKiDRLYgwk~~p 612 (1064)
T KOG1144|consen 541 GLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----N-LLR---MRKTPFIVALNKIDRLYGWKSCP 612 (1064)
T ss_pred eeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----H-HHH---hcCCCeEEeehhhhhhcccccCC
Confidence 47889999999999999999999999999999964 4444432 2 222 23689999999999542 122
Q ss_pred HHHHHhhhcccCc----------------cCCCcccccccc----cCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 101 EDEVRHFFGLYGL----------------TTGKEFTSREIL----QMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 101 ~~~i~~~~~~~~~----------------~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...+...+..+.- .+.++--....+ ....+.++++||.+|+||-+++-||++.
T Consensus 613 ~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 613 NAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred CchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 2222221111000 000000000111 1134678999999999999999988763
No 290
>KOG1191|consensus
Probab=98.71 E-value=1.4e-07 Score=72.52 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=82.9
Q ss_pred CCCCCcccCCCCC----ceeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEEC--CCCCchHHH
Q psy2161 4 NDRTAQHMPTLHP----TSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDA--SDRSRFPES 68 (155)
Q Consensus 4 ~~~~~~~~pT~~~----~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~--~~~~~~~~~ 68 (155)
++++...-|--|. -...++++|+++.+.||+|-++ ........+..||++++|+|+ +..++-..+
T Consensus 290 ~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i 369 (531)
T KOG1191|consen 290 REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKI 369 (531)
T ss_pred cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHH
Confidence 3444434444444 4788899999999999999655 112345567799999999999 333333333
Q ss_pred HHHHHHHHh-----CCCCCCCcEEEEEeCCCcCCcCC---HHHHHhhhcccCccCCCcccccccccCccEEE-EEeeecc
Q psy2161 69 KYELDSLLA-----DDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTSREILQMRPIEL-FMCSVLK 139 (155)
Q Consensus 69 ~~~l~~~~~-----~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sa~~ 139 (155)
...+..... .+.....|++++.||.|+....+ ...+. +.+. .....+++ .++|+++
T Consensus 370 ~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~--------------~~~~~~~i~~~vs~~t 434 (531)
T KOG1191|consen 370 ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSA--------------EGRSVFPIVVEVSCTT 434 (531)
T ss_pred HHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-cccc--------------ccCcccceEEEeeech
Confidence 334443321 11223479999999999865311 11100 1110 01123444 4599999
Q ss_pred CCChHHHHHHHHhhc
Q psy2161 140 RQGFGNGFRWLANYI 154 (155)
Q Consensus 140 ~~~i~~~~~~l~~~i 154 (155)
++|++++.+.+.+.+
T Consensus 435 keg~~~L~~all~~~ 449 (531)
T KOG1191|consen 435 KEGCERLSTALLNIV 449 (531)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999998887653
No 291
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.69 E-value=1.4e-06 Score=60.19 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=77.9
Q ss_pred CcccCCCCCc--eeEEEECCEEEEEEEcCC----------ChhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHHH
Q psy2161 8 AQHMPTLHPT--SEELSMGDIVFTTHDLGG----------HVQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYEL 72 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~l 72 (155)
.-+.-|-|.+ ..-+++++. +.+.|.|| ++....+..+|++. -.++++++|+..+..-.+ ..+
T Consensus 51 ArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D--~em 127 (200)
T COG0218 51 ARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLD--REM 127 (200)
T ss_pred eecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHH--HHH
Confidence 4455666765 344455443 88999999 23445556667764 458888899976433322 122
Q ss_pred HHHHhCCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHH
Q psy2161 73 DSLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 73 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 148 (155)
-+.+.. .++|+++++||+|....... ..+.+.+... .....+ ++..|+.++.|++++..
T Consensus 128 ~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~-------------~~~~~~-~~~~ss~~k~Gi~~l~~ 190 (200)
T COG0218 128 IEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP-------------PPDDQW-VVLFSSLKKKGIDELKA 190 (200)
T ss_pred HHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC-------------CCccce-EEEEecccccCHHHHHH
Confidence 222222 37999999999997652212 3344344331 111122 88899999999999998
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
.|.+.+
T Consensus 191 ~i~~~~ 196 (200)
T COG0218 191 KILEWL 196 (200)
T ss_pred HHHHHh
Confidence 887653
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.1e-07 Score=70.75 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=81.9
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
|+.........++..+.|.|.||++.+...+-..+...|..++|+|.++. ++-+.+ ..-+ .+.....++|
T Consensus 37 TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL--~iLd-----llgi~~giiv 109 (447)
T COG3276 37 TIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHL--LILD-----LLGIKNGIIV 109 (447)
T ss_pred eEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHH--HHHH-----hcCCCceEEE
Confidence 33334555666678999999999999998888888999999999999642 222221 1111 2234567999
Q ss_pred EeCCCcCCcCCHH-HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 90 GNKIDIFDAASED-EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 90 ~nK~Dl~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+||+|..+..-.+ .+.+.+.. ..-.+.+++.+|+++|.||+++...|.+..
T Consensus 110 ltk~D~~d~~r~e~~i~~Il~~--------------l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 110 LTKADRVDEARIEQKIKQILAD--------------LSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred EeccccccHHHHHHHHHHHHhh--------------cccccccccccccccCCCHHHHHHHHHHhh
Confidence 9999987532111 12222211 112345679999999999999999988754
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.65 E-value=5.6e-07 Score=74.08 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=50.7
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++++++++||||+..|.......++.+|++++|+|+...-... ....+....+. +.|.++++||+|+.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence 3689999999999999888888899999999999987642222 22223332221 46789999999975
No 294
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.5e-07 Score=66.52 Aligned_cols=122 Identities=20% Similarity=0.258 Sum_probs=81.0
Q ss_pred CCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCC-cEEEE
Q psy2161 14 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDV-PILIL 89 (155)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~-piilv 89 (155)
+......++..+.++-..|+||+..|...+..-..+.|+.|+|+.+++ |++-+.+ ++... -++ .++++
T Consensus 63 Intahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi--Llarq------vGvp~ivvf 134 (394)
T COG0050 63 INTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI--LLARQ------VGVPYIVVF 134 (394)
T ss_pred eccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh--hhhhh------cCCcEEEEE
Confidence 333355566678999999999999998888877889999999999887 3333321 12221 244 57788
Q ss_pred EeCCCcCC-----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--------ChHHHHHHHHhhcC
Q psy2161 90 GNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--------GFGNGFRWLANYID 155 (155)
Q Consensus 90 ~nK~Dl~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~i~~~~~~l~~~i~ 155 (155)
+||+|+.+ .....++.+.+..+++ .....+++.-||+..- .|.++++.+-.+++
T Consensus 135 lnK~Dmvdd~ellelVemEvreLLs~y~f------------~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip 201 (394)
T COG0050 135 LNKVDMVDDEELLELVEMEVRELLSEYGF------------PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIP 201 (394)
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHcCC------------CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCC
Confidence 89999975 2334566666666432 2235667777766422 26777777766654
No 295
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.62 E-value=2.5e-07 Score=64.47 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=65.4
Q ss_pred EEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCCc-
Q psy2161 26 IVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFDA- 98 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~~- 98 (155)
..+.+|||||...... +....+.++|+++++.|. ++.... .++..+. .. ++|+++|+||+|+...
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~-~~---~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQ-CM---GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHH-Hh---CCCEEEEEecccchhhh
Confidence 4799999999643211 122236789999998532 343333 4444443 22 5899999999998421
Q ss_pred C--------CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec--cCCChHHHHHHHHhhcC
Q psy2161 99 A--------SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL--KRQGFGNGFRWLANYID 155 (155)
Q Consensus 99 ~--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--~~~~i~~~~~~l~~~i~ 155 (155)
. ..+++.+.+...- ...........-.++.+|+. .+.|+..+.+.+...|+
T Consensus 124 ~~~~~~~~~~~~~~l~~i~~~~------~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~ 184 (197)
T cd04104 124 EQRSKPRSFNREQVLQEIRDNC------LENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLP 184 (197)
T ss_pred hhccccccccHHHHHHHHHHHH------HHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhh
Confidence 0 0122222111100 00000011123468899998 67899999998887664
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.59 E-value=1.1e-07 Score=68.25 Aligned_cols=125 Identities=17% Similarity=0.046 Sum_probs=58.2
Q ss_pred EEEEEEcCCChhhHHhHHhhc--------CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 27 VFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~--------~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.+.++|||||.++...|.... ...-++++++|+....+.... ..++.... ....-+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s-~~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLS-IMLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHH-HHHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHH-HHhhCCCCEEEeeeccCccc
Confidence 689999999988655444333 456699999998654332211 12221111 00112689999999999975
Q ss_pred cCCHHHHHhhhccc-Ccc------CCCccccccc-ccC--ccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 98 AASEDEVRHFFGLY-GLT------TGKEFTSREI-LQM--RPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 98 ~~~~~~i~~~~~~~-~~~------~~~~~~~~~~-~~~--~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.. .+...+.+... .+. ..+....+.+ +.. ....++.+|+++++|+++++..+-+.
T Consensus 171 ~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 171 KY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred ch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 22 22111111100 000 0000001111 111 22379999999999999999988654
No 297
>KOG1490|consensus
Probab=98.55 E-value=1.7e-07 Score=72.34 Aligned_cols=122 Identities=13% Similarity=0.093 Sum_probs=80.9
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChh----------hHHh-HHhhcCCCCEEEEEEECCC--CCchHHHHHHHHHHHhC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRV-WRDYFPAVDAIVFIIDASD--RSRFPESKYELDSLLAD 78 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~-~~~~~~~ad~ii~v~D~~~--~~~~~~~~~~l~~~~~~ 78 (155)
+|.+..+..++++-.++++.||||.-. ..+. .-.-+ -.+++|++|+|. ..+..+...++..+.
T Consensus 201 TTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALAHL--raaVLYfmDLSe~CGySva~QvkLfhsIK-- 276 (620)
T KOG1490|consen 201 TTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALAHL--RSAVLYFMDLSEMCGYSVAAQVKLYHSIK-- 276 (620)
T ss_pred ccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHHHh--hhhheeeeechhhhCCCHHHHHHHHHHhH--
Confidence 444455666666668999999999421 1110 00112 237899999975 456666667777775
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 79 DALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..+.++|+|+|+||+|+....+.. ++.+.+.. ..++.++.+|..+.+|+.++....++.
T Consensus 277 pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~----------------~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 277 PLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIID----------------DGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred HHhcCCceEEEeecccccCccccCHHHHHHHHHHHh----------------ccCceEEEecccchhceeeHHHHHHHH
Confidence 445789999999999986633222 33333322 245789999999999999987766543
No 298
>KOG1532|consensus
Probab=98.55 E-value=1.3e-07 Score=68.08 Aligned_cols=126 Identities=16% Similarity=0.216 Sum_probs=69.9
Q ss_pred EEEEEEEcCCChh-hH-----HhHHhhcC--CCCEEEEEEECC---CCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 26 IVFTTHDLGGHVQ-AR-----RVWRDYFP--AVDAIVFIIDAS---DRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-~~-----~~~~~~~~--~ad~ii~v~D~~---~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
....++|||||-. |. ...-..++ .--+++|++|.. +|..|-...-+-..++ .....|+++|.||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil---yktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL---YKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH---HhccCCeEEEEeccc
Confidence 6688999999743 11 11111222 344889999974 3444533322223333 334689999999999
Q ss_pred cCCcCCHHHHHhhhcccCc---------cC--CCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 95 IFDAASEDEVRHFFGLYGL---------TT--GKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 95 l~~~~~~~~i~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.+..=..++..-++.+.. .. ...-.+..+-..+++..+.|||.+|.|.+++|..+-+.+
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESV 263 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHH
Confidence 9763222222111111100 00 000011122233567899999999999999998876543
No 299
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.7e-06 Score=66.05 Aligned_cols=87 Identities=24% Similarity=0.263 Sum_probs=63.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.+++|++..+++.||||++.|..-....+.-+|.++.|+|+...-.- ....+ .++. .+.+.||+-++||.|...
T Consensus 73 VMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KL-feVc---rlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 73 VMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKL-FEVC---RLRDIPIFTFINKLDREG 147 (528)
T ss_pred EEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccH-HHHHH-HHHH---hhcCCceEEEeecccccc
Confidence 678899999999999999999988777778889999999999753211 11233 3333 235899999999999765
Q ss_pred cCCH---HHHHhhhc
Q psy2161 98 AASE---DEVRHFFG 109 (155)
Q Consensus 98 ~~~~---~~i~~~~~ 109 (155)
..+. +++.+.+.
T Consensus 148 rdP~ELLdEiE~~L~ 162 (528)
T COG4108 148 RDPLELLDEIEEELG 162 (528)
T ss_pred CChHHHHHHHHHHhC
Confidence 3332 35555554
No 300
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.51 E-value=1.9e-06 Score=66.12 Aligned_cols=35 Identities=26% Similarity=0.456 Sum_probs=27.4
Q ss_pred EEEEEEEcCCC----hhhHHhHHhh---cCCCCEEEEEEECC
Q psy2161 26 IVFTTHDLGGH----VQARRVWRDY---FPAVDAIVFIIDAS 60 (155)
Q Consensus 26 ~~~~~~Dt~G~----~~~~~~~~~~---~~~ad~ii~v~D~~ 60 (155)
..+++||+||. .....+...+ +++||++++|+|..
T Consensus 72 ~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 72 IPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred eeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 67999999994 3344454455 88999999999996
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.49 E-value=4.3e-07 Score=67.98 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=67.6
Q ss_pred EEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC
Q psy2161 21 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS 100 (155)
Q Consensus 21 ~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~ 100 (155)
++..|+.+.|.||+|...-... ...-||.++++.+......+...+. .++ ...-++|+||+|+.+...
T Consensus 144 ~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiVVNKaDl~~~~~ 211 (332)
T PRK09435 144 CEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIVINKADGDNKTA 211 (332)
T ss_pred HhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEEeehhcccchhH
Confidence 3446789999999997632222 3557999999986443333333222 121 122389999999865322
Q ss_pred H----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 E----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 ~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. .++...+.... .......-+++.+||++|.|++++++.+.+.+
T Consensus 212 a~~~~~el~~~L~l~~----------~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 212 ARRAAAEYRSALRLLR----------PKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHHHHhccc----------ccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 23333332200 00000113689999999999999999988753
No 302
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.47 E-value=4.7e-07 Score=63.25 Aligned_cols=101 Identities=16% Similarity=0.272 Sum_probs=63.4
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE--EEEEeCCCcCCc--CC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI--LILGNKIDIFDA--AS 100 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi--ilv~nK~Dl~~~--~~ 100 (155)
+....+.++.|..-..... ..+ ++.++.|+|+.+..+... ... ..... ++++||+|+.+. ..
T Consensus 91 ~~D~iiIEt~G~~l~~~~~-~~l--~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATFS-PEL--ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCCEEEEECCCCCcccccc-hhh--hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccccccc
Confidence 4567788999942211222 122 688999999976443211 000 12334 889999999753 22
Q ss_pred HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+.+.+.. + ....+++++||++|.|++++++|+.++.
T Consensus 157 ~~~~~~~~~~--------------~-~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 157 LGVMERDAKK--------------M-RGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHHHH--------------h-CCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333333332 1 1346799999999999999999998753
No 303
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.47 E-value=4.7e-06 Score=52.96 Aligned_cols=73 Identities=25% Similarity=0.385 Sum_probs=48.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChh----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
|.......+.+++..+.++||||-.. +...... +..+|+++||+|++++.. +.....+..+ + .
T Consensus 34 T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~-~~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~ 106 (116)
T PF01926_consen 34 TRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQ-ISKSDLIIYVVDASNPIT-EDDKNILREL-K----N 106 (116)
T ss_dssp SSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHH-HCTESEEEEEEETTSHSH-HHHHHHHHHH-H----T
T ss_pred eeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHH-HHHCCEEEEEEECCCCCC-HHHHHHHHHH-h----c
Confidence 33333456678899999999999521 1223344 489999999999776221 2223344444 2 4
Q ss_pred CCcEEEEEeC
Q psy2161 83 DVPILILGNK 92 (155)
Q Consensus 83 ~~piilv~nK 92 (155)
++|+++|+||
T Consensus 107 ~~~~i~v~NK 116 (116)
T PF01926_consen 107 KKPIILVLNK 116 (116)
T ss_dssp TSEEEEEEES
T ss_pred CCCEEEEEcC
Confidence 7899999998
No 304
>PRK13796 GTPase YqeH; Provisional
Probab=98.45 E-value=1.3e-06 Score=66.45 Aligned_cols=99 Identities=19% Similarity=0.357 Sum_probs=59.3
Q ss_pred hhhHHhHHhhcCCCC-EEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCcc
Q psy2161 37 VQARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT 114 (155)
Q Consensus 37 ~~~~~~~~~~~~~ad-~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~ 114 (155)
..|...... +..++ .|++|+|+.+...- ....+.+.. .+.|+++|+||+|+.. ....+.+..++....
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~-- 126 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFNGS--WIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA-- 126 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCCCc--hhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH--
Confidence 345555444 44555 99999999774311 112233332 2679999999999964 233344433322100
Q ss_pred CCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 115 TGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.........++.+||++|.|++++++.+.+.
T Consensus 127 --------k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 --------KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred --------HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011111258899999999999999998653
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.44 E-value=1.4e-06 Score=55.60 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=66.2
Q ss_pred EEEcCCChhhHHhH----HhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 30 THDLGGHVQARRVW----RDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 30 ~~Dt~G~~~~~~~~----~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
..||||.--..+.| ......+|++++|-.++++++. ..- +. ....+|+|-|.+|.||.+.......
T Consensus 41 ~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~---f~------~~~~k~vIgvVTK~DLaed~dI~~~ 111 (148)
T COG4917 41 DIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFPPG---FL------DIGVKKVIGVVTKADLAEDADISLV 111 (148)
T ss_pred ccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCCcc---cc------cccccceEEEEecccccchHhHHHH
Confidence 57999954333333 3445689999999999887443 210 11 1235689999999999853333344
Q ss_pred HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..++... ..-++|++|+.+..|+++++++|..
T Consensus 112 ~~~L~ea----------------Ga~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 112 KRWLREA----------------GAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHc----------------CCcceEEEeccCcccHHHHHHHHHh
Confidence 4444331 2347999999999999999999875
No 306
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.42 E-value=1.9e-06 Score=71.98 Aligned_cols=67 Identities=16% Similarity=0.196 Sum_probs=52.4
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++.++++||||+..|.......++.+|++|+|+|+...-.... ...+..... .++|+++++||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 5889999999999999888888999999999999986433222 223333322 368999999999986
No 307
>KOG3886|consensus
Probab=98.40 E-value=1.2e-06 Score=61.65 Aligned_cols=85 Identities=20% Similarity=0.350 Sum_probs=60.7
Q ss_pred CCCCCceeEEEECC-EEEEEEEcCCChhhHH-----hHHhhcCCCCEEEEEEECCCCCc---hHHHHHHHHHHHhCCCCC
Q psy2161 12 PTLHPTSEELSMGD-IVFTTHDLGGHVQARR-----VWRDYFPAVDAIVFIIDASDRSR---FPESKYELDSLLADDALT 82 (155)
Q Consensus 12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~-----~~~~~~~~ad~ii~v~D~~~~~~---~~~~~~~l~~~~~~~~~~ 82 (155)
+|+.+....+.+-| .-+.+||.+||+.+.. .-.+.+++.+++++|||++..+- +......++.++++ .+
T Consensus 38 ~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP 115 (295)
T KOG3886|consen 38 ATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SP 115 (295)
T ss_pred CcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CC
Confidence 56666666666644 8999999999986543 34567889999999999976432 23333445555543 35
Q ss_pred CCcEEEEEeCCCcCCc
Q psy2161 83 DVPILILGNKIDIFDA 98 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~ 98 (155)
...+.+..+|.|+...
T Consensus 116 ~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 116 EAKIFCLLHKMDLVQE 131 (295)
T ss_pred cceEEEEEeechhccc
Confidence 6789999999998753
No 308
>PTZ00416 elongation factor 2; Provisional
Probab=98.39 E-value=2.2e-06 Score=71.51 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=52.0
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++.++++||||+..|.......++.+|++|+|+|++..-... ....+..+.. .++|+++++||+|+.
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 578999999999999888888899999999999997642222 2233344432 258999999999986
No 309
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.38 E-value=2.6e-06 Score=63.15 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=65.6
Q ss_pred EECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH
Q psy2161 22 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE 101 (155)
Q Consensus 22 ~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 101 (155)
+..++.+.|.||+|..... ......+|.++++.+.... +++......+ ..+|.++|+||+|+.+....
T Consensus 123 ~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 123 DAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNV 190 (300)
T ss_pred HhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHH
Confidence 3457999999999954211 2245668888888544322 2322222222 25788999999998753322
Q ss_pred HHHHhhh--cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 102 DEVRHFF--GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 102 ~~i~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..+...+ ....+ .........+++.+||++|.|++++++++.+.
T Consensus 191 ~~~~~~~~~~l~~l--------~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 191 TIARLMLALALEEI--------RRREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred HHHHHHHHHHHhhc--------cccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 2212111 00000 00000111258999999999999999999764
No 310
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=2.9e-06 Score=69.07 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=64.9
Q ss_pred ceeEEEECC-EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 17 TSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 17 ~~~~~~~~~-~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
...++.+.+ ++++++||||+-.|..-....++-+|++++|+|+...-..+.-.-| ... ...++|.+++.||+|.
T Consensus 66 aa~s~~~~~~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~-rqa----~~~~vp~i~fiNKmDR 140 (697)
T COG0480 66 AATTLFWKGDYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVW-RQA----DKYGVPRILFVNKMDR 140 (697)
T ss_pred eeeEEEEcCceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHH-HHH----hhcCCCeEEEEECccc
Confidence 356777886 9999999999999999999999999999999999763222221222 222 1247999999999997
Q ss_pred CC---cCCHHHHHhhhcc
Q psy2161 96 FD---AASEDEVRHFFGL 110 (155)
Q Consensus 96 ~~---~~~~~~i~~~~~~ 110 (155)
.. .....++...+..
T Consensus 141 ~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 141 LGADFYLVVEQLKERLGA 158 (697)
T ss_pred cccChhhhHHHHHHHhCC
Confidence 65 3455566555553
No 311
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.34 E-value=1.1e-05 Score=56.16 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=52.3
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhh-----------HHhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQA-----------RRVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADD 79 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~ 79 (155)
.|.........+++.++.++||||-... ...+.....++|++++|+|+..... ...+..++.+.....
T Consensus 35 ~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~ 114 (196)
T cd01852 35 VTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK 114 (196)
T ss_pred cccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH
Confidence 3555556677778999999999994321 1123334568999999999876221 122233333332111
Q ss_pred CCCCCcEEEEEeCCCcCC
Q psy2161 80 ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~ 97 (155)
.-.++++|.|++|...
T Consensus 115 --~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 115 --VLDHTIVLFTRGDDLE 130 (196)
T ss_pred --hHhcEEEEEECccccC
Confidence 1258999999999654
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.31 E-value=2.9e-06 Score=59.60 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=62.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--CHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--SED 102 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~ 102 (155)
+..+.+.||.|.-.... .+....+..+.|+|+.+...... . ... ....|.++++||+|+.+.. ...
T Consensus 102 ~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~------~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 102 DIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL--K-YPG------MFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh--h-hHh------HHhhCCEEEEEHHHccccchhhHH
Confidence 45788889888311111 11123556667888865432211 0 011 1246889999999996532 223
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++.+.+.. .. ...+++++||++|.|++++++|+.+..
T Consensus 170 ~~~~~l~~--------------~~-~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKK--------------IN-PEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHH--------------hC-CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 33333322 11 236799999999999999999998753
No 313
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.30 E-value=7.1e-06 Score=60.16 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=48.2
Q ss_pred ccCCCCCc--eeEEEECC--EEEEEEEcCCChh------------------hHH--------hHHhhcC--CCCEEEEEE
Q psy2161 10 HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ------------------ARR--------VWRDYFP--AVDAIVFII 57 (155)
Q Consensus 10 ~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~------------------~~~--------~~~~~~~--~ad~ii~v~ 57 (155)
+.+|.+.. ...++.+| .++++|||||-.. |.. .+...++ .+|+++|++
T Consensus 43 ~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i 122 (276)
T cd01850 43 IDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFI 122 (276)
T ss_pred cCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEE
Confidence 45565554 34455566 6899999999311 111 1112333 478889998
Q ss_pred ECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 58 DASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 58 D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.+.. .+... ...+..+. ..+|+++|+||+|+..
T Consensus 123 ~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 123 EPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred eCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 87642 22222 23334442 2589999999999854
No 314
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=1.2e-05 Score=60.95 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=55.4
Q ss_pred cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccccc
Q psy2161 47 FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQ 126 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (155)
..++|.+++|+++..+-....+..++.... ..++|.++|+||+||.+. ..+....+.. .
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~----~~~i~piIVLNK~DL~~~--~~~~~~~~~~--------------~- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAW----ESGAEPVIVLTKADLCED--AEEKIAEVEA--------------L- 168 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHH----HcCCCEEEEEEChhcCCC--HHHHHHHHHH--------------h-
Confidence 578999999999964333333344444432 236778899999999653 2112222221 1
Q ss_pred CccEEEEEeeeccCCChHHHHHHHH
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
..+..++.+|+++|.|++++..++.
T Consensus 169 ~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCcEEEEECCCCccHHHHHHHhh
Confidence 1346789999999999999999885
No 315
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.11 E-value=2.4e-05 Score=56.62 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=77.7
Q ss_pred EECCEEEEEEEcCCCh-------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 22 SMGDIVFTTHDLGGHV-------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 22 ~~~~~~~~~~Dt~G~~-------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.+++..+.+||+||-. +++.....++...|.+++++++.++.--.. .+.+.++.- ...+.+++++.|.+|
T Consensus 83 ~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~--~~~~~~~i~~VtQ~D 159 (296)
T COG3596 83 SYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVII--LGLDKRVLFVVTQAD 159 (296)
T ss_pred hccccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHH--hccCceeEEEEehhh
Confidence 4466889999999843 478889999999999999999977532211 133344431 123489999999999
Q ss_pred cCCc---------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 95 IFDA---------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 95 l~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.... .+...+.++.+. +-......++ .--+++..|+-.+.|++++...+.+.+|
T Consensus 160 ~a~p~~~W~~~~~~p~~a~~qfi~~------k~~~~~~~~q-~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 160 RAEPGREWDSAGHQPSPAIKQFIEE------KAEALGRLFQ-EVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hhccccccccccCCCCHHHHHHHHH------HHHHHHHHHh-hcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 6432 112222222221 0000011111 1235677777899999999999988764
No 316
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.08 E-value=1.2e-05 Score=44.27 Aligned_cols=43 Identities=33% Similarity=0.519 Sum_probs=28.0
Q ss_pred CCEEEEEEECCCC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 50 VDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 50 ad~ii~v~D~~~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.++++|++|+|.. -+.+.....+.++... ..++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 6799999999864 4556666777777533 35899999999998
No 317
>KOG0461|consensus
Probab=98.07 E-value=4.2e-05 Score=57.16 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=69.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCCc----CC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFDA----AS 100 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~~----~~ 100 (155)
.++.+.|+||+.+..........-.|..++|+|+.....-+.+ .-.+.+++ -+..++|+||+|+..+ ..
T Consensus 70 lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~sk 143 (522)
T KOG0461|consen 70 LQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASK 143 (522)
T ss_pred ceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhH
Confidence 6789999999988777666656667889999999753222221 12233332 3567888899986431 11
Q ss_pred HH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccC----CChHHHHHHHHhhc
Q psy2161 101 ED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR----QGFGNGFRWLANYI 154 (155)
Q Consensus 101 ~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~----~~i~~~~~~l~~~i 154 (155)
.+ .+.+.++.. -...+.+++++||+.| ++|.|+.+.|..++
T Consensus 144 i~k~~kk~~KtLe~t-------------~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 144 IEKSAKKVRKTLEST-------------GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred HHHHHHHHHHHHHhc-------------CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 12 222223221 1223568999999999 78888888776543
No 318
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.05 E-value=2.8e-05 Score=55.35 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=58.0
Q ss_pred ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcCCcC-C
Q psy2161 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIFDAA-S 100 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~~~~-~ 100 (155)
.++.++.++||||.. ..+ ....+.+|++++++|++....... ...+..+ .. .+.|. ++|+||+|+.+.. .
T Consensus 80 ~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllviDa~~~~~~~~-~~i~~~l-~~---~g~p~vi~VvnK~D~~~~~~~ 151 (225)
T cd01882 80 GKKRRLTFIECPNDI--NAM-IDIAKVADLVLLLIDASFGFEMET-FEFLNIL-QV---HGFPRVMGVLTHLDLFKKNKT 151 (225)
T ss_pred cCCceEEEEeCCchH--HHH-HHHHHhcCEEEEEEecCcCCCHHH-HHHHHHH-HH---cCCCeEEEEEeccccCCcHHH
Confidence 356899999999864 222 334678999999999975433222 2222222 21 24674 5599999986421 1
Q ss_pred HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC
Q psy2161 101 EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142 (155)
Q Consensus 101 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 142 (155)
..++.+.+... .... .....+++.+||++...
T Consensus 152 ~~~~~~~l~~~---------~~~~-~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 152 LRKTKKRLKHR---------FWTE-VYQGAKLFYLSGIVHGR 183 (225)
T ss_pred HHHHHHHHHHH---------HHHh-hCCCCcEEEEeeccCCC
Confidence 22222222110 0000 11245899999998744
No 319
>KOG0466|consensus
Probab=98.02 E-value=9.1e-06 Score=59.68 Aligned_cols=109 Identities=15% Similarity=0.149 Sum_probs=72.7
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA-- 99 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~-- 99 (155)
..+.|.|+||++-....+..-..-.|++++.+..+. |++-+.+.. -++. .-+.++++-||+|+....
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM-----~LkhiiilQNKiDli~e~~A 197 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM-----KLKHIIILQNKIDLIKESQA 197 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh-----hhceEEEEechhhhhhHHHH
Confidence 578999999998665555444445678888887754 233333221 1121 236799999999986521
Q ss_pred --CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 100 --SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 100 --~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
..+++..+... -...+-+++++||--+.||+-+.+++++.+|
T Consensus 198 ~eq~e~I~kFi~~--------------t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 198 LEQHEQIQKFIQG--------------TVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHhc--------------cccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 22344444433 2334568999999999999999999998875
No 320
>KOG0468|consensus
Probab=98.01 E-value=1.1e-05 Score=64.67 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=52.3
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+-+++.||||+..|..-....++-+|++++|+|+...-.+.. ...+ ++.-..+.|+++|+||.|..
T Consensus 197 ~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~i----khaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERII----KHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred eeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHH----HHHHhccCcEEEEEehhHHH
Confidence 789999999999999888888999999999999986554432 2223 33334578999999999954
No 321
>KOG0460|consensus
Probab=97.87 E-value=0.0001 Score=54.97 Aligned_cols=113 Identities=19% Similarity=0.292 Sum_probs=72.9
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH--HHHHHHHhCCCCCCCcEEEEEeCCCcCC----
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK--YELDSLLADDALTDVPILILGNKIDIFD---- 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~--~~l~~~~~~~~~~~~piilv~nK~Dl~~---- 97 (155)
...++-=.|+||+-.|...+-.-..+-|+.|+|+.+++..- ...+ -++.... .-..+++.+||.|+.+
T Consensus 115 a~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV-----GV~~ivvfiNKvD~V~d~e~ 188 (449)
T KOG0460|consen 115 AKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV-----GVKHIVVFINKVDLVDDPEM 188 (449)
T ss_pred cccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc-----CCceEEEEEecccccCCHHH
Confidence 45888899999999999888888889999999999987422 2222 2222221 2356888999999873
Q ss_pred -cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec---cCCC-------hHHHHHHHHhhc
Q psy2161 98 -AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL---KRQG-------FGNGFRWLANYI 154 (155)
Q Consensus 98 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------i~~~~~~l~~~i 154 (155)
.....++++.+..++ +...+.+++.-||+ .|.+ |..+++.+-.+|
T Consensus 189 leLVEmE~RElLse~g------------f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 189 LELVEMEIRELLSEFG------------FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred HHHHHHHHHHHHHHcC------------CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 223446666666543 33345677766654 5533 445555544433
No 322
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.83 E-value=5.8e-05 Score=50.88 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=44.2
Q ss_pred EEEEEEEcCCChh----hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 26 IVFTTHDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 26 ~~~~~~Dt~G~~~----~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
..+.++||||-.. ....+..|++.+|++++|.+++....-.....+.... .. ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence 6799999999643 3467888999999999999998754444333333333 22 234499999984
No 323
>KOG0459|consensus
Probab=97.82 E-value=2.1e-05 Score=59.66 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=82.1
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEE
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPIL 87 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~pii 87 (155)
--|+++-.+.++....++++.|+||+..|.+.+-.-..+||+-++|+.+.. ...|+.-.+.-+...-.....-...+
T Consensus 142 gKtvEvGrA~FEte~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lV 221 (501)
T KOG0459|consen 142 GKTVEVGRAYFETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLI 221 (501)
T ss_pred cceeeeeeEEEEecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEE
Confidence 356777778888888999999999999998888877889999999987732 12232221222222211222346789
Q ss_pred EEEeCCCcCC-cCCH---HHHHhhhcccCccCCCccccc-cccc-CccEEEEEeeeccCCChHHHH
Q psy2161 88 ILGNKIDIFD-AASE---DEVRHFFGLYGLTTGKEFTSR-EILQ-MRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 88 lv~nK~Dl~~-~~~~---~~i~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
+++||+|.+. +.+. +++.+.+..+ ++ ..++ .....+++||..+|.++.+..
T Consensus 222 v~vNKMddPtvnWs~eRy~E~~~k~~~f---------Lr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 222 VLINKMDDPTVNWSNERYEECKEKLQPF---------LRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred EEEEeccCCccCcchhhHHHHHHHHHHH---------HHHhcccCCCCceeeecccccccchhhcc
Confidence 9999999765 3332 3333333221 00 0011 245689999999999987654
No 324
>KOG0464|consensus
Probab=97.72 E-value=8.9e-06 Score=62.06 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=63.1
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
-.+++|+|++++++||||+..|+-....+++--|+++.|||++-.-.-+.+.-|- .....++|-...+||+|...
T Consensus 94 av~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwr-----qadk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 94 AVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWR-----QADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred eeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeeh-----hccccCCchhhhhhhhhhhh
Confidence 4567888999999999999999999999999999999999997532222222332 12334689999999999654
Q ss_pred ---cCCHHHHHhhhc
Q psy2161 98 ---AASEDEVRHFFG 109 (155)
Q Consensus 98 ---~~~~~~i~~~~~ 109 (155)
....+.+.+.++
T Consensus 169 anfe~avdsi~ekl~ 183 (753)
T KOG0464|consen 169 ANFENAVDSIEEKLG 183 (753)
T ss_pred hhhhhHHHHHHHHhC
Confidence 223344555544
No 325
>KOG3905|consensus
Probab=97.68 E-value=0.00084 Score=50.05 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=83.8
Q ss_pred cccCCCCCceeEEEECC------EEEEEEEcCCChhhHHhHHhhcCCC----CEEEEEEECCCCCch-HHHHHHHHHH--
Q psy2161 9 QHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPAV----DAIVFIIDASDRSRF-PESKYELDSL-- 75 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~~------~~~~~~Dt~G~~~~~~~~~~~~~~a----d~ii~v~D~~~~~~~-~~~~~~l~~~-- 75 (155)
.+.+-.|.....+++++ .++.+|=.-|......+.+..+... -.+|+++|.++|+.. +.+..|..-+
T Consensus 77 ~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlviltasms~Pw~~lesLqkWa~Vl~e 156 (473)
T KOG3905|consen 77 TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVILTASMSNPWTLLESLQKWASVLRE 156 (473)
T ss_pred ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 45555666666666643 7899999999988888887766643 278889999998553 3333333200
Q ss_pred --------------------------Hh---C-------C----------------------CCCCCcEEEEEeCCCcCC
Q psy2161 76 --------------------------LA---D-------D----------------------ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 76 --------------------------~~---~-------~----------------------~~~~~piilv~nK~Dl~~ 97 (155)
.. . . ...++|+++|++|+|...
T Consensus 157 hidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s 236 (473)
T KOG3905|consen 157 HIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVS 236 (473)
T ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhh
Confidence 00 0 0 001479999999999743
Q ss_pred cC-----CHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 98 AA-----SED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 98 ~~-----~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.. -.+ .+.+.+.. -+-..+-..+.+|+|...|++-+..+|...
T Consensus 237 ~leke~eyrDehfdfiq~~lRk-------------FCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 237 VLEKEHEYRDEHFDFIQSHLRK-------------FCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred HhhhcchhhHHHHHHHHHHHHH-------------HHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 11 111 11112211 122345678999999999999999999865
No 326
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.67 E-value=0.00049 Score=50.73 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=56.9
Q ss_pred hhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccc
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSRE 123 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 123 (155)
.-..+.|-+++|+.+.+|+--.. +...|-.. ...++.-++++||+||.+...... .+.+..
T Consensus 75 p~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~------------- 136 (301)
T COG1162 75 PPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAV-KELLRE------------- 136 (301)
T ss_pred CcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHH-HHHHHH-------------
Confidence 33446777888887777643322 22332222 224666677799999976433332 222222
Q ss_pred cccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 124 ILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 124 ~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+...++..+.+|++++.+++++..++...
T Consensus 137 -y~~~gy~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 137 -YEDIGYPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred -HHhCCeeEEEecCcCcccHHHHHHHhcCC
Confidence 23356789999999999999999988754
No 327
>KOG0465|consensus
Probab=97.64 E-value=0.00017 Score=57.38 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=53.1
Q ss_pred eEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 19 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
..+.+.+++++++||||+-.|.--....++--|+.++++|+...-.-....-|.... ..++|.+...||.|..+
T Consensus 97 t~~~w~~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~-----ry~vP~i~FiNKmDRmG 170 (721)
T KOG0465|consen 97 TYFTWRDYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMK-----RYNVPRICFINKMDRMG 170 (721)
T ss_pred eeeeeccceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHH-----hcCCCeEEEEehhhhcC
Confidence 344566899999999999888777777788899999999886432222222232222 24799999999999765
No 328
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.62 E-value=0.0011 Score=52.22 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=84.1
Q ss_pred CCcccCCCCCceeEEEECC------EEEEEEEcCCChhhHHhHHhhcCCC----CEEEEEEECCCCCchH-HHHHHHH--
Q psy2161 7 TAQHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPAV----DAIVFIIDASDRSRFP-ESKYELD-- 73 (155)
Q Consensus 7 ~~~~~pT~~~~~~~~~~~~------~~~~~~Dt~G~~~~~~~~~~~~~~a----d~ii~v~D~~~~~~~~-~~~~~l~-- 73 (155)
.+.+.+|.|....-+++.+ .++.+|-.+|...+..+.+..+... -.+|+|+|.+.|+.+- .+..|+.
T Consensus 48 ~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 48 IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 3456677776544444422 6899999999888888777666532 3889999999987652 2223222
Q ss_pred -----H------------------HHh------CC-----------------C-------------CCCCcEEEEEeCCC
Q psy2161 74 -----S------------------LLA------DD-----------------A-------------LTDVPILILGNKID 94 (155)
Q Consensus 74 -----~------------------~~~------~~-----------------~-------------~~~~piilv~nK~D 94 (155)
. +.+ .. . .-++|++||++|+|
T Consensus 128 ~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~~lpl~~g~l~~nlGipi~VV~tksD 207 (472)
T PF05783_consen 128 REHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESVLLPLGEGVLTENLGIPIVVVCTKSD 207 (472)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccccCCCCCcccccccCcceEEEEeccc
Confidence 0 000 00 0 00379999999999
Q ss_pred cCCcCC------HH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 95 IFDAAS------ED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 95 l~~~~~------~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...... .+ -+.+++.. -+-..+...+.||++...|++-++++|...+
T Consensus 208 ~~~~Lek~~~~~~e~~DfIqq~LR~-------------~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l 263 (472)
T PF05783_consen 208 KIETLEKETDWKEEHFDFIQQYLRT-------------FCLKYGASLIYTSVKEEKNLDLLYKYILHRL 263 (472)
T ss_pred HHHHHhhhcccchhhHHHHHHHHHH-------------HHHhcCCeEEEeeccccccHHHHHHHHHHHh
Confidence 643111 11 22222222 1233566789999999999999999987654
No 329
>PTZ00258 GTP-binding protein; Provisional
Probab=97.62 E-value=0.001 Score=51.10 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=24.5
Q ss_pred EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECC
Q psy2161 26 IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
.+++++||||-.. ........++.||++++|+|..
T Consensus 85 aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 85 AQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 3599999999432 1112333467899999999974
No 330
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.61 E-value=0.0003 Score=48.57 Aligned_cols=100 Identities=11% Similarity=0.137 Sum_probs=63.0
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-CCCCCCCcEEEEEeCCCcCCcC--CHH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-DDALTDVPILILGNKIDIFDAA--SED 102 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-~~~~~~~piilv~nK~Dl~~~~--~~~ 102 (155)
..+.|.+.+|+-.-. ....+ ..+.-|+|+|.+..+.... + .+.... .=++|+||.|+...+ +.+
T Consensus 97 ~Dll~iEs~GNL~~~--~sp~L-~d~~~v~VidvteGe~~P~---------K~gP~i~~-aDllVInK~DLa~~v~~dle 163 (202)
T COG0378 97 LDLLFIESVGNLVCP--FSPDL-GDHLRVVVIDVTEGEDIPR---------KGGPGIFK-ADLLVINKTDLAPYVGADLE 163 (202)
T ss_pred CCEEEEecCcceecc--cCcch-hhceEEEEEECCCCCCCcc---------cCCCceeE-eeEEEEehHHhHHHhCccHH
Confidence 578888888833211 11111 3448889999986432211 1 111112 557899999997733 335
Q ss_pred HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+.+.... -..+.+++.+|+++|.|++++++|+...
T Consensus 164 vm~~da~~---------------~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 164 VMARDAKE---------------VNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHH---------------hCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 55544332 1145689999999999999999999764
No 331
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.58 E-value=0.00068 Score=48.76 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=45.0
Q ss_pred EEEEEEEcCCCh-------------hhHHhHHhhcC-CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 26 IVFTTHDLGGHV-------------QARRVWRDYFP-AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 26 ~~~~~~Dt~G~~-------------~~~~~~~~~~~-~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
..|.++||||-. ....+...|++ ..+++++|+|++..-.-.........+ ...++|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 789999999953 12345677888 456999999986432222222222222 224689999999
Q ss_pred CCCcCC
Q psy2161 92 KIDIFD 97 (155)
Q Consensus 92 K~Dl~~ 97 (155)
|.|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999865
No 332
>KOG1424|consensus
Probab=97.57 E-value=0.00023 Score=55.65 Aligned_cols=78 Identities=22% Similarity=0.310 Sum_probs=55.0
Q ss_pred hHHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCC
Q psy2161 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG 116 (155)
Q Consensus 39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~ 116 (155)
.+.+|+- +..+|+|+.++|+.+|--|.. +..+..++ ...+..+|+.||+||..........+++..
T Consensus 165 WRQLWRV-lErSDivvqIVDARnPllfr~~dLe~Yvke~-----d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~------ 232 (562)
T KOG1424|consen 165 WRQLWRV-LERSDIVVQIVDARNPLLFRSPDLEDYVKEV-----DPSKANVLLVNKADLLPPEQRVAWAEYFRQ------ 232 (562)
T ss_pred HHHHHHH-HhhcceEEEEeecCCccccCChhHHHHHhcc-----ccccceEEEEehhhcCCHHHHHHHHHHHHh------
Confidence 4566665 678999999999999866633 33333333 245789999999999765555556666665
Q ss_pred CcccccccccCccEEEEEeeecc
Q psy2161 117 KEFTSREILQMRPIELFMCSVLK 139 (155)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~Sa~~ 139 (155)
.+++++.-||..
T Consensus 233 -----------~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 233 -----------NNIPVVFFSALA 244 (562)
T ss_pred -----------cCceEEEEeccc
Confidence 457888888876
No 333
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.51 E-value=0.0028 Score=48.38 Aligned_cols=122 Identities=17% Similarity=0.164 Sum_probs=71.1
Q ss_pred CCEEEEEEEcCCChhhHHh--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC----
Q psy2161 24 GDIVFTTHDLGGHVQARRV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD---- 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~---- 97 (155)
.+.-+.|.||.|++.+-.. .-..=++.|-.++++.+++.-+.. .+.-+.-.+ .-..|++++.+|+|+..
T Consensus 199 aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~ 273 (527)
T COG5258 199 ADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKIDMVPDDRF 273 (527)
T ss_pred cccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEecccCcHHHH
Confidence 4467899999999876442 222334788899999887642221 122222221 12689999999999865
Q ss_pred cCCHHHHHhhhcc---cCccCCCccc-----ccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 98 AASEDEVRHFFGL---YGLTTGKEFT-----SREILQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 98 ~~~~~~i~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
+-..+++...+.. .++..+.... .+...+..-.+++.+|+.+|.|++-+.+.+
T Consensus 274 ~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 274 QGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 2233444444432 1222121111 122223345789999999999976555443
No 334
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.40 E-value=0.00055 Score=43.40 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=41.7
Q ss_pred hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+......+++.++.++.|++.++.++++.. |...++.. ...+.|.++++||.|+.+
T Consensus 36 ~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 36 IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEE 91 (124)
T ss_pred hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHh
Confidence 444556678899999999999988887654 66666533 235689999999999843
No 335
>KOG0705|consensus
Probab=97.38 E-value=0.00083 Score=53.14 Aligned_cols=129 Identities=18% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCCCCcccCCCCC-ceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 4 NDRTAQHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 4 ~~~~~~~~pT~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
.|....-+.+.|. ..+.+..++ ..+.+.|.+|.. -..|...+|++||||...+.++|+.+..+...+-....
T Consensus 52 tgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~ 126 (749)
T KOG0705|consen 52 TGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRN 126 (749)
T ss_pred cceeccccCCcCccceeeEEeeccceEeeeecccCCc-----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccc
Confidence 3444444545554 344444443 778888988844 33456679999999999999999888766666644444
Q ss_pred CCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 81 LTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
....|+++++++--... ..........+ .....+.+++.+|.+|.+++.+|+.++..
T Consensus 127 r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~----------------~~~krcsy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 127 ISDLPLILVGTQDHISAKRPRVITDDRARQLS----------------AQMKRCSYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred cccchHHhhcCcchhhcccccccchHHHHHHH----------------HhcCccceeecchhhhhhHHHHHHHHHHH
Confidence 56789999988643221 12222222222 23356789999999999999999987753
No 336
>KOG0447|consensus
Probab=97.37 E-value=0.0083 Score=47.87 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCCceeEEEECC---EEEEEEEcCCC-------------hhhHHhHHhhcCCCCEEEEEEE-CCCCCchHHHHHHHHHH
Q psy2161 13 TLHPTSEELSMGD---IVFTTHDLGGH-------------VQARRVWRDYFPAVDAIVFIID-ASDRSRFPESKYELDSL 75 (155)
Q Consensus 13 T~~~~~~~~~~~~---~~~~~~Dt~G~-------------~~~~~~~~~~~~~ad~ii~v~D-~~~~~~~~~~~~~l~~~ 75 (155)
|+......+.+.| -+..+.|.||- +...++..+|..+.++||+|+- .+ .+.-+.....+
T Consensus 396 TVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS----VDAERSnVTDL 471 (980)
T KOG0447|consen 396 TVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS----VDAERSIVTDL 471 (980)
T ss_pred ccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC----cchhhhhHHHH
Confidence 4444566677766 78999999993 3456788899999999999983 32 22223344555
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcc
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGL 110 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~ 110 (155)
.......+.-.|+|++|.|+.+ ..++..|.+.++.
T Consensus 472 Vsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 472 VSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred HHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 5555667889999999999987 3577788887764
No 337
>KOG0410|consensus
Probab=97.36 E-value=0.00038 Score=51.71 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=71.4
Q ss_pred CCCCCceeEEEE-CCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 12 PTLHPTSEELSM-GDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 12 pT~~~~~~~~~~-~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
.|..++.+.... +|..+-+.||-|- ..|+....+ ...||.++.|+|++.|+--.. .......++....
T Consensus 211 ATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee-VaeadlllHvvDiShP~ae~q-~e~Vl~vL~~igv 288 (410)
T KOG0410|consen 211 ATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE-VAEADLLLHVVDISHPNAEEQ-RETVLHVLNQIGV 288 (410)
T ss_pred eeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH-HhhcceEEEEeecCCccHHHH-HHHHHHHHHhcCC
Confidence 466665555555 4588999999983 235555554 568999999999998854332 3444455555555
Q ss_pred CCCcEEE----EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 82 TDVPILI----LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piil----v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+..|.+. |-||+|...... .-+. + ..+.+||++|.|++++...+-.
T Consensus 289 ~~~pkl~~mieVdnkiD~e~~~~------e~E~------------------n-~~v~isaltgdgl~el~~a~~~ 338 (410)
T KOG0410|consen 289 PSEPKLQNMIEVDNKIDYEEDEV------EEEK------------------N-LDVGISALTGDGLEELLKAEET 338 (410)
T ss_pred CcHHHHhHHHhhccccccccccC------cccc------------------C-CccccccccCccHHHHHHHHHH
Confidence 4445444 445555432111 0111 1 2678999999999999887654
No 338
>KOG1707|consensus
Probab=97.35 E-value=0.0034 Score=49.97 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=51.1
Q ss_pred eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 18 SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 18 ~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
+..+...| ..+.+-|.+-. ....+...- ..||+++++||++++.+|.........- ......|++.|+.|+|+
T Consensus 464 vn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~YDsS~p~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dl 538 (625)
T KOG1707|consen 464 VNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLVYDSSNPRSFEYLAEVYNKY---FDLYKIPCLMVATKADL 538 (625)
T ss_pred eeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEecccCCchHHHHHHHHHHHh---hhccCCceEEEeecccc
Confidence 44444444 67888887754 222222222 6899999999999999997765444433 22257899999999999
Q ss_pred CC
Q psy2161 96 FD 97 (155)
Q Consensus 96 ~~ 97 (155)
.+
T Consensus 539 De 540 (625)
T KOG1707|consen 539 DE 540 (625)
T ss_pred ch
Confidence 65
No 339
>KOG1143|consensus
Probab=97.26 E-value=0.0031 Score=48.01 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=71.7
Q ss_pred EEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH-
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASED- 102 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~- 102 (155)
.-++|+|.+|+.+|....-+.+. ..|..++|+.+...-.. ..+..+.-+.. -++|++++.+|+|+.+....+
T Consensus 249 KlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~ 323 (591)
T KOG1143|consen 249 KLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIAA----LNIPFFVLVTKMDLVDRQGLKK 323 (591)
T ss_pred ceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHHH----hCCCeEEEEEeeccccchhHHH
Confidence 56899999999998765444333 35677788877543221 11223333321 268999999999998743333
Q ss_pred ---HHHhhhcccCccC-C-------CcccccccccC-ccEEEEEeeeccCCChHHHHHHH
Q psy2161 103 ---EVRHFFGLYGLTT-G-------KEFTSREILQM-RPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 103 ---~i~~~~~~~~~~~-~-------~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
++...+...+.++ + +...+.+++.. .-.+++.+|+.+|+|+.-+...|
T Consensus 324 tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 324 TVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 3333333333332 1 11122333333 45689999999999987665443
No 340
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.26 E-value=0.0057 Score=45.58 Aligned_cols=77 Identities=6% Similarity=0.094 Sum_probs=44.0
Q ss_pred eEEEECCEEEEEEEcCCChhhH-------HhHHhhc--CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCC-CCCCcEE
Q psy2161 19 EELSMGDIVFTTHDLGGHVQAR-------RVWRDYF--PAVDAIVFIIDASDRSRFPES-KYELDSLLADDA-LTDVPIL 87 (155)
Q Consensus 19 ~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~-~~~~pii 87 (155)
.....+|.+++++||||..... .....++ .+.|+++||..++.. .+... ...++.+..... .--.+++
T Consensus 79 ~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~I 157 (313)
T TIGR00991 79 VSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSL 157 (313)
T ss_pred EEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEE
Confidence 3345688999999999965321 1222222 269999999665432 12211 223333322111 0125799
Q ss_pred EEEeCCCcC
Q psy2161 88 ILGNKIDIF 96 (155)
Q Consensus 88 lv~nK~Dl~ 96 (155)
+|.|+.|..
T Consensus 158 VVfTh~d~~ 166 (313)
T TIGR00991 158 VVLTHAQFS 166 (313)
T ss_pred EEEECCccC
Confidence 999999965
No 341
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.26 E-value=0.003 Score=45.69 Aligned_cols=78 Identities=5% Similarity=0.043 Sum_probs=45.1
Q ss_pred ceeEEEECCEEEEEEEcCCChhhH----------HhHHhhcC--CCCEEEEEEECCCCC-chH--HHHHHHHHHHhCCCC
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQAR----------RVWRDYFP--AVDAIVFIIDASDRS-RFP--ESKYELDSLLADDAL 81 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~~--~ad~ii~v~D~~~~~-~~~--~~~~~l~~~~~~~~~ 81 (155)
.......++.++++|||||-.... .....|++ ..++++||..++... ... .+...+.+.....
T Consensus 70 ~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~-- 147 (249)
T cd01853 70 REVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS-- 147 (249)
T ss_pred EEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--
Confidence 344555678999999999954321 11233443 678899987665422 222 2223333332111
Q ss_pred CCCcEEEEEeCCCcC
Q psy2161 82 TDVPILILGNKIDIF 96 (155)
Q Consensus 82 ~~~piilv~nK~Dl~ 96 (155)
--.++++|.||+|..
T Consensus 148 i~~~~ivV~T~~d~~ 162 (249)
T cd01853 148 IWRNAIVVLTHAASS 162 (249)
T ss_pred hHhCEEEEEeCCccC
Confidence 114799999999974
No 342
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.22 E-value=0.00045 Score=50.89 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=39.5
Q ss_pred CCcEEEEEeCCCcCCcC--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 83 DVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..+-++|+||+|+.... ..+.+.+.+.. + .....++.+||++|.|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~--------------l-np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACARE--------------V-NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHh--------------h-CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999996422 23333333322 1 134679999999999999999999864
No 343
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.18 E-value=0.0011 Score=47.92 Aligned_cols=107 Identities=12% Similarity=0.095 Sum_probs=63.3
Q ss_pred CCEEEEEEEcCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCH
Q psy2161 24 GDIVFTTHDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASE 101 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~ 101 (155)
-|+.+.+.+|.|-- +-... ..-||.+++|+-..-.+..+..+.=+.++ .=++|.||+|... ....
T Consensus 120 aG~D~IiiETVGvGQsE~~I----~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~vVNKaD~~gA~~~~ 186 (266)
T PF03308_consen 120 AGFDVIIIETVGVGQSEVDI----ADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFVVNKADRPGADRTV 186 (266)
T ss_dssp TT-SEEEEEEESSSTHHHHH----HTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEEEE--SHHHHHHHH
T ss_pred cCCCEEEEeCCCCCccHHHH----HHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEEEeCCChHHHHHHH
Confidence 46889999998732 22222 34599999999776555554444344444 3478899999755 2234
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.++...+.... .....-..+++.|||.++.|++++++.+.+.
T Consensus 187 ~~l~~~l~l~~----------~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 187 RDLRSMLHLLR----------EREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHHHCS----------TSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHhhcc----------ccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 45555444310 0001113479999999999999999988753
No 344
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.17 E-value=0.00081 Score=45.94 Aligned_cols=44 Identities=23% Similarity=0.294 Sum_probs=28.0
Q ss_pred CEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 51 d~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
|++++|+|+..+.+... ..+.+... ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999987633321 12222211 1123589999999999954
No 345
>KOG2484|consensus
Probab=97.14 E-value=0.001 Score=50.58 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=49.5
Q ss_pred CChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 35 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 35 G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
....|..-....+..+|+||.|+|+.+|.+-... ..++.+.. ...++..|+|+||+||......+++..++..
T Consensus 132 s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~-~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~ 204 (435)
T KOG2484|consen 132 SKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQ-AHGNKKLILVLNKIDLVPREVVEKWLVYLRR 204 (435)
T ss_pred hHHHHHHHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHh-ccCCceEEEEeehhccCCHHHHHHHHHHHHh
Confidence 3445666677778899999999999998665332 12222211 1235899999999999665556666666665
No 346
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.09 E-value=0.0027 Score=47.69 Aligned_cols=92 Identities=25% Similarity=0.358 Sum_probs=60.9
Q ss_pred cCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161 33 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111 (155)
Q Consensus 33 t~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 111 (155)
.+|+. ++.......+..+|+++-|+|+.+|.+... ..++.+. .++|.++|+||+|+.+.....+..+.+...
T Consensus 17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~ 89 (322)
T COG1161 17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIV-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKE 89 (322)
T ss_pred CCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHH-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhc
Confidence 36664 456677788899999999999998765533 2344553 245669999999997644455555555542
Q ss_pred CccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161 112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
.+...+.++++.+.+...+.
T Consensus 90 ----------------~~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 90 ----------------EGIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred ----------------CCCccEEEEeecccCccchH
Confidence 13445667777666644444
No 347
>KOG0467|consensus
Probab=97.07 E-value=0.0013 Score=53.85 Aligned_cols=77 Identities=18% Similarity=0.181 Sum_probs=55.4
Q ss_pred cCCCCCcee----EEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCC
Q psy2161 11 MPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 11 ~pT~~~~~~----~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
+.|.|.+++ ....+++.++++|+||+..|.+......+=+|+.++.+|+.. +++..-++ ... ..+
T Consensus 53 eq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlr----q~~----~~~ 124 (887)
T KOG0467|consen 53 EQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLR----QAW----IEG 124 (887)
T ss_pred hhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHH----HHH----Hcc
Confidence 346666532 233367999999999999999999888899999999999864 34443332 221 124
Q ss_pred CcEEEEEeCCCc
Q psy2161 84 VPILILGNKIDI 95 (155)
Q Consensus 84 ~piilv~nK~Dl 95 (155)
...++|+||+|.
T Consensus 125 ~~~~lvinkidr 136 (887)
T KOG0467|consen 125 LKPILVINKIDR 136 (887)
T ss_pred CceEEEEehhhh
Confidence 578899999993
No 348
>KOG3887|consensus
Probab=96.77 E-value=0.012 Score=42.43 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=45.3
Q ss_pred EEEEEEEcCCChhhH-H--hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh--CCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQAR-R--VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA--DDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~-~--~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~--~~~~~~~piilv~nK~Dl~ 96 (155)
+.|++||.|||..+- + -....++++.+++||+|+.+. +.++..-+..+.. ..-.+++.+=+.+.|.|-.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGL 148 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL 148 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence 679999999997642 2 245668899999999999652 2222222222211 1223578888999999954
No 349
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.73 E-value=0.021 Score=38.88 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE 103 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 103 (155)
+++.+.++|||+.... .....+..||.+++++..+. .+...+..+++.+.+ .+.|+.+|+||+|.... ...+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~-~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH----FGIPVGVVINKYDLNDE-IAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc-hHHH
Confidence 4689999999975432 23345678999999998763 455566666655532 24678999999997542 2334
Q ss_pred HHhhhcc
Q psy2161 104 VRHFFGL 110 (155)
Q Consensus 104 i~~~~~~ 110 (155)
+.+.++.
T Consensus 163 ~~~~~~~ 169 (179)
T cd03110 163 IEDYCEE 169 (179)
T ss_pred HHHHHHH
Confidence 4444443
No 350
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.72 E-value=0.026 Score=39.78 Aligned_cols=84 Identities=13% Similarity=0.057 Sum_probs=47.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChh-------hHH----hHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQ-------ARR----VWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDA 80 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~-------~~~----~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~ 80 (155)
|.........++|..+.++||||-.. ... .......+.+++++|+....... -.....++..+.....
T Consensus 36 t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~ 115 (212)
T PF04548_consen 36 TQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI 115 (212)
T ss_dssp -SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG
T ss_pred ccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH
Confidence 44455666688999999999999311 111 12234568999999999873221 1222344555543221
Q ss_pred CCCCcEEEEEeCCCcCCc
Q psy2161 81 LTDVPILILGNKIDIFDA 98 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~ 98 (155)
-..+++|.+..|....
T Consensus 116 --~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 116 --WKHTIVVFTHADELED 131 (212)
T ss_dssp --GGGEEEEEEEGGGGTT
T ss_pred --HhHhhHHhhhcccccc
Confidence 2468999999986553
No 351
>KOG1954|consensus
Probab=96.62 E-value=0.007 Score=46.04 Aligned_cols=68 Identities=26% Similarity=0.236 Sum_probs=48.2
Q ss_pred EEEEEEEcCCChh-----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 26 IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.+++++||||.-+ |.....=|...+|.|+++||+...+--++....+..+..+ .=.+-+|+||+|
T Consensus 147 e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----EdkiRVVLNKAD 222 (532)
T KOG1954|consen 147 ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKIRVVLNKAD 222 (532)
T ss_pred hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cceeEEEecccc
Confidence 4799999999422 3445566778999999999987655445555555555322 347888999999
Q ss_pred cCC
Q psy2161 95 IFD 97 (155)
Q Consensus 95 l~~ 97 (155)
..+
T Consensus 223 qVd 225 (532)
T KOG1954|consen 223 QVD 225 (532)
T ss_pred ccC
Confidence 643
No 352
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.54 E-value=0.063 Score=41.86 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=31.3
Q ss_pred HhhcC-CCCEEEEEE-ECC--C--CCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 44 RDYFP-AVDAIVFII-DAS--D--RSRFPES-KYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 44 ~~~~~-~ad~ii~v~-D~~--~--~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
+..+. .++..++|. |.+ + .+.+... ..++.++.+ .++|+++|+||+|
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~d 191 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTH 191 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcC
Confidence 34455 799999888 774 1 2233333 456666642 3799999999999
No 353
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=96.43 E-value=0.0099 Score=45.46 Aligned_cols=113 Identities=18% Similarity=0.116 Sum_probs=53.8
Q ss_pred EEEEEEEcCCChhhHHhH-----HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC--C-
Q psy2161 26 IVFTTHDLGGHVQARRVW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF--D- 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~-----~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~--~- 97 (155)
-.+.+||.||.....-.. ..-+..-|.+|++.+ ..|.....++...+... ++|+.+|-+|+|.. +
T Consensus 86 pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fiii~s----~rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~ 158 (376)
T PF05049_consen 86 PNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFIIISS----ERFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNE 158 (376)
T ss_dssp TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEEEES----SS--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHH
T ss_pred CCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEEEeC----CCCchhhHHHHHHHHHc---CCcEEEEEecccccHhhh
Confidence 359999999953321112 223557888888763 46766666665554433 68999999999951 1
Q ss_pred ------cCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC--ChHHHHHHHHhhcC
Q psy2161 98 ------AASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ--GFGNGFRWLANYID 155 (155)
Q Consensus 98 ------~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--~i~~~~~~l~~~i~ 155 (155)
.... +++++.+... .+......-.+|.+|+.+-. ++..+.+.|.+.||
T Consensus 159 ~~~~p~~f~~e~~L~~IR~~c~~~----------L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 159 RRRKPRTFNEEKLLQEIRENCLEN----------LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp HCC-STT--HHTHHHHHHHHHHHH----------HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred hccCCcccCHHHHHHHHHHHHHHH----------HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 1122 2222222110 00012233468888887644 47777777766553
No 354
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.40 E-value=0.032 Score=41.29 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=66.2
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHH
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASED 102 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~ 102 (155)
.|+-+.|.+|.|--...--. ..-||.++++.=..-.+..+.++.=+.++ -=++|+||.|..+ .....
T Consensus 142 aG~DvIIVETVGvGQsev~I---~~~aDt~~~v~~pg~GD~~Q~iK~GimEi---------aDi~vINKaD~~~A~~a~r 209 (323)
T COG1703 142 AGYDVIIVETVGVGQSEVDI---ANMADTFLVVMIPGAGDDLQGIKAGIMEI---------ADIIVINKADRKGAEKAAR 209 (323)
T ss_pred cCCCEEEEEecCCCcchhHH---hhhcceEEEEecCCCCcHHHHHHhhhhhh---------hheeeEeccChhhHHHHHH
Confidence 46889999998853222111 23488888887554445555555444444 3478899999655 22333
Q ss_pred HHHhhhcccCccCCCcccccccccCc--cEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 103 EVRHFFGLYGLTTGKEFTSREILQMR--PIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++...+.... ...... ..+++.+||.+|+|++++++.+.+.
T Consensus 210 ~l~~al~~~~----------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 210 ELRSALDLLR----------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred HHHHHHHhhc----------ccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 4444444310 001112 3369999999999999999988753
No 355
>KOG0463|consensus
Probab=96.31 E-value=0.029 Score=42.96 Aligned_cols=118 Identities=20% Similarity=0.121 Sum_probs=65.1
Q ss_pred EEEEEEEcCCChhhHHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE 103 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 103 (155)
.-++|+|.+|+++|-...-.-.. -.|..++++-++-. -....+..+...+ .-++|+++|.+|+|++.....++
T Consensus 219 KviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL----aL~VPVfvVVTKIDMCPANiLqE 293 (641)
T KOG0463|consen 219 KVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL----ALHVPVFVVVTKIDMCPANILQE 293 (641)
T ss_pred eeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh----hhcCcEEEEEEeeccCcHHHHHH
Confidence 56899999999987553211111 35667777765421 1111122232222 12689999999999986322222
Q ss_pred H----HhhhcccCccCCCccccccc-----------ccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 104 V----RHFFGLYGLTTGKEFTSREI-----------LQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 104 i----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
- ...+... ...+.+.+.++ -..+-+++|-+|-.+|.|+.-+...|
T Consensus 294 tmKll~rllkS~--gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 294 TMKLLTRLLKSP--GCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred HHHHHHHHhcCC--CcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 2 2222211 01222222211 12345789999999999987665544
No 356
>KOG2423|consensus
Probab=96.09 E-value=0.051 Score=41.91 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=42.8
Q ss_pred HHhHHhhcC---CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc
Q psy2161 40 RRVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 109 (155)
Q Consensus 40 ~~~~~~~~~---~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 109 (155)
...|...|+ .+|++|-|+|+.+|-.-.. ..+++.++. ..+.+..++|+||+||............+.
T Consensus 201 kRIW~ELyKViDSSDVvvqVlDARDPmGTrc--~~ve~ylkk-e~phKHli~vLNKvDLVPtwvt~~Wv~~lS 270 (572)
T KOG2423|consen 201 KRIWGELYKVIDSSDVVVQVLDARDPMGTRC--KHVEEYLKK-EKPHKHLIYVLNKVDLVPTWVTAKWVRHLS 270 (572)
T ss_pred hHHHHHHHHhhcccceeEEeeeccCCccccc--HHHHHHHhh-cCCcceeEEEeeccccccHHHHHHHHHHHh
Confidence 345655544 8999999999988743322 234444432 235789999999999976444444444444
No 357
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.42 E-value=0.034 Score=39.81 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=44.6
Q ss_pred EEECCEEEEEEEc-CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 21 LSMGDIVFTTHDL-GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 21 ~~~~~~~~~~~Dt-~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+..+.+.+.+.|| +|-+.|. +...+++|.+|.|+|.+. .++..+.. +.++.+.. .-+++.+|+||.|-.
T Consensus 129 l~~~~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 129 LILNRYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred HhcccCcEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHh--CCceEEEEEeeccch
Confidence 3345578899998 6766543 344679999999999874 23333222 23332222 148999999999953
No 358
>KOG2486|consensus
Probab=95.42 E-value=0.074 Score=39.08 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=60.1
Q ss_pred CEEEEEEEcCCC----------hhhHHhHHhhcCCCC---EEEEEEECCCC-CchHH-HHHHHHHHHhCCCCCCCcEEEE
Q psy2161 25 DIVFTTHDLGGH----------VQARRVWRDYFPAVD---AIVFIIDASDR-SRFPE-SKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 25 ~~~~~~~Dt~G~----------~~~~~~~~~~~~~ad---~ii~v~D~~~~-~~~~~-~~~~l~~~~~~~~~~~~piilv 89 (155)
+.++.+.|.||- ..+......|+.+-+ -+.+.+|++.+ +..+. ...|+ ...++|+.+|
T Consensus 182 ~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~-------ge~~VP~t~v 254 (320)
T KOG2486|consen 182 GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL-------GENNVPMTSV 254 (320)
T ss_pred cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH-------hhcCCCeEEe
Confidence 578999999991 223344555555433 34455676543 22211 12332 2347999999
Q ss_pred EeCCCcCCcCC---HHHHHhhhc-ccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 90 GNKIDIFDAAS---EDEVRHFFG-LYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 90 ~nK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.||||...... ......... .+++ ......-..+++.+|+.++.|+++++-.++
T Consensus 255 fTK~DK~k~~~~~~kKp~~~i~~~f~~l--------~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~ 312 (320)
T KOG2486|consen 255 FTKCDKQKKVKRTGKKPGLNIKINFQGL--------IRGVFLVDLPWIYVSSVTSLGRDLLLLHIA 312 (320)
T ss_pred eehhhhhhhccccccCccccceeehhhc--------cccceeccCCceeeecccccCceeeeeehh
Confidence 99999643111 111111111 1111 111222234578999999999998865554
No 359
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=95.22 E-value=0.091 Score=34.40 Aligned_cols=65 Identities=12% Similarity=0.204 Sum_probs=43.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
+.+.++|+|+.. .......++.+|.++++++.+ ..++......++.+.... ...++.+|.|+++.
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 789999998754 233345688899999999876 344544444555543222 34578899999974
No 360
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=95.18 E-value=0.18 Score=41.62 Aligned_cols=77 Identities=6% Similarity=-0.026 Sum_probs=45.0
Q ss_pred EEECCEEEEEEEcCCChhh----------HHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC-CCCcEE
Q psy2161 21 LSMGDIVFTTHDLGGHVQA----------RRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDAL-TDVPIL 87 (155)
Q Consensus 21 ~~~~~~~~~~~Dt~G~~~~----------~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~-~~~pii 87 (155)
...++.++.++||||-... ......+++ +.|++|||..++......+-..++..+....+. --..+|
T Consensus 161 ~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tI 240 (763)
T TIGR00993 161 GLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAI 240 (763)
T ss_pred EEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEE
Confidence 3457899999999995431 112233444 589999998875433221222333333221111 124799
Q ss_pred EEEeCCCcCC
Q psy2161 88 ILGNKIDIFD 97 (155)
Q Consensus 88 lv~nK~Dl~~ 97 (155)
+|.++.|...
T Consensus 241 VVFThgD~lp 250 (763)
T TIGR00993 241 VTLTHAASAP 250 (763)
T ss_pred EEEeCCccCC
Confidence 9999999753
No 361
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=95.16 E-value=0.07 Score=39.24 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=33.5
Q ss_pred cCCCCCceeEEEECCE-----------------EEEEEEcCCChh----hHH---hHHhhcCCCCEEEEEEECC
Q psy2161 11 MPTLHPTSEELSMGDI-----------------VFTTHDLGGHVQ----ARR---VWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~-----------------~~~~~Dt~G~~~----~~~---~~~~~~~~ad~ii~v~D~~ 60 (155)
-+|+.++...+.+.+. +++++|+||-.. ... .....++.+|++++|+|..
T Consensus 30 ftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 30 FCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 3566777666666542 599999999422 122 2333467899999999874
No 362
>KOG0469|consensus
Probab=94.77 E-value=0.096 Score=41.69 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=52.2
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC--C-c
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILILGNKIDIF--D-A 98 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~--~-~ 98 (155)
++-++++|.||+-.|.+.....++-.|+.+.|+|--+. ++-. .+...+..+ -+| ++++||.|.. + +
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTET----VLrQA~~ER---IkP-vlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTET----VLRQAIAER---IKP-VLVMNKMDRALLELQ 168 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHH----HHHHHHHhh---ccc-eEEeehhhHHHHhhc
Confidence 48899999999999999999999999999999986432 2222 222222221 245 4568999942 2 5
Q ss_pred CCHHHHHhhhc
Q psy2161 99 ASEDEVRHFFG 109 (155)
Q Consensus 99 ~~~~~i~~~~~ 109 (155)
.+.+++-+.+.
T Consensus 169 ~~~EeLyqtf~ 179 (842)
T KOG0469|consen 169 LSQEELYQTFQ 179 (842)
T ss_pred CCHHHHHHHHH
Confidence 56665555443
No 363
>KOG2485|consensus
Probab=94.73 E-value=0.11 Score=38.67 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=49.0
Q ss_pred EEEEcCCChhh-HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhh
Q psy2161 29 TTHDLGGHVQA-RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHF 107 (155)
Q Consensus 29 ~~~Dt~G~~~~-~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~ 107 (155)
..-+.||++.- -...+.-++..|.||=|-|+.-|-+-.. ..+++++ +.+|-|+|.||+||.+......+.+.
T Consensus 25 ~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~-----~~k~riiVlNK~DLad~~~~k~~iq~ 97 (335)
T KOG2485|consen 25 PRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL-----PPKPRIIVLNKMDLADPKEQKKIIQY 97 (335)
T ss_pred ccccCchHHHHHHHHHHhhcccccEEEEeeccccCCcccc--HHHHHhc-----CCCceEEEEecccccCchhhhHHHHH
Confidence 33456787642 2345566889999999999875533322 3455554 26899999999999885444455555
Q ss_pred hcc
Q psy2161 108 FGL 110 (155)
Q Consensus 108 ~~~ 110 (155)
++.
T Consensus 98 ~~~ 100 (335)
T KOG2485|consen 98 LEW 100 (335)
T ss_pred HHh
Confidence 443
No 364
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.55 E-value=0.19 Score=36.93 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=39.2
Q ss_pred CCEEEEEEEcCCChhhHHhH-------Hhhc-----CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 24 GDIVFTTHDLGGHVQARRVW-------RDYF-----PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~-------~~~~-----~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
+++.+.++||||........ .... ..+|.+++|+|++.. .+... ......+.. .+.-+|.|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 56899999999975432211 1111 248899999999642 22222 222222111 25678889
Q ss_pred CCCcCC
Q psy2161 92 KIDIFD 97 (155)
Q Consensus 92 K~Dl~~ 97 (155)
|.|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999643
No 365
>PHA02518 ParA-like protein; Provisional
Probab=94.33 E-value=0.17 Score=35.17 Aligned_cols=68 Identities=7% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchH---HHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFP---ESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~---~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
..+.+.++||||.. .......+..||.+|+++..+. .++. ....++..... . ....| ..++.|+.+-.
T Consensus 75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~iv~n~~~~~ 146 (211)
T PHA02518 75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQE-V-TDGLPKFAFIISRAIKN 146 (211)
T ss_pred ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHh-h-CCCCceEEEEEeccCCc
Confidence 34789999999874 4456667788999999987763 2333 33334443321 1 12343 45667876543
No 366
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=94.17 E-value=0.32 Score=30.25 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=39.9
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC-CCcEEEEEeC
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT-DVPILILGNK 92 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~-~~piilv~nK 92 (155)
.+.+.|+|+.... .....+..||.++++++.+. .++.....+++.+.... .. ..++.+|+|+
T Consensus 44 D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~~-~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVLD-YSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHcC-CCCcCceEEEecC
Confidence 7899999986543 23345678999999987653 44555555555553322 22 4567788875
No 367
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=93.91 E-value=0.67 Score=34.26 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=26.2
Q ss_pred CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
..|+++|.++++.. .+.... ..+..+ + ..+++|-|+.|+|...
T Consensus 113 RVH~cLYfI~pt~~-~L~~~Di~~mk~L-s----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGH-GLKPLDIEFMKRL-S----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSS-SS-HHHHHHHHHH-T----TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCc-cchHHHHHHHHHh-c----ccccEEeEEecccccC
Confidence 57899999998752 333332 333444 2 2478999999999754
No 368
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=93.57 E-value=0.26 Score=43.42 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=45.5
Q ss_pred EEEEEEEcCCCh--------hhHHhHHhhcC---------CCCEEEEEEECCCCCc-----h----HHHHHHHHHHHhCC
Q psy2161 26 IVFTTHDLGGHV--------QARRVWRDYFP---------AVDAIVFIIDASDRSR-----F----PESKYELDSLLADD 79 (155)
Q Consensus 26 ~~~~~~Dt~G~~--------~~~~~~~~~~~---------~ad~ii~v~D~~~~~~-----~----~~~~~~l~~~~~~~ 79 (155)
-+-.++||+|.. .....|..++. ..+|||+++|+++.-. . ..++..+.++....
T Consensus 161 ~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l 240 (1169)
T TIGR03348 161 DEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL 240 (1169)
T ss_pred CCEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355699999932 23345655544 5899999999865211 1 23344555554333
Q ss_pred CCCCCcEEEEEeCCCcCC
Q psy2161 80 ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~ 97 (155)
. -..||.++.+|+|+..
T Consensus 241 g-~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 241 G-ARFPVYLVLTKADLLA 257 (1169)
T ss_pred C-CCCCEEEEEecchhhc
Confidence 2 3689999999999863
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.48 E-value=0.4 Score=36.09 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=37.5
Q ss_pred CCEEEEEEEcCCChhhHH----hHHhh--------cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 24 GDIVFTTHDLGGHVQARR----VWRDY--------FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~----~~~~~--------~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.++.+.++||||...... ....+ -...+..++|+|++.. .+.+... ....+. -.+.-+|.|
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~----~~~~giIlT 267 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEA----VGLTGIILT 267 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhh----CCCCEEEEE
Confidence 568899999999643211 11111 1246789999999743 2222211 222111 135678899
Q ss_pred CCCcC
Q psy2161 92 KIDIF 96 (155)
Q Consensus 92 K~Dl~ 96 (155)
|.|..
T Consensus 268 KlD~t 272 (318)
T PRK10416 268 KLDGT 272 (318)
T ss_pred CCCCC
Confidence 99953
No 370
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=93.40 E-value=0.53 Score=36.01 Aligned_cols=83 Identities=18% Similarity=0.212 Sum_probs=60.9
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
.+.+.++|.| .-.......++.++|-+++|++.+= -++...++.++.+. ....+..+..+|+||.+.....+..++
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~-~~r~~~~~p~lv~n~~~~~~~~~~~dl 292 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELK-RLRPNDPKPILVLNRVGVPKRPEPSDL 292 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHH-HhCCCCCCceEEeeecCCCCCCCHHHH
Confidence 3779999999 3335667788999999999998753 35566677777774 344567888899999987655556677
Q ss_pred Hhhhccc
Q psy2161 105 RHFFGLY 111 (155)
Q Consensus 105 ~~~~~~~ 111 (155)
...++..
T Consensus 293 ~~~~~i~ 299 (366)
T COG4963 293 EEILGIE 299 (366)
T ss_pred HHHhCCc
Confidence 7766653
No 371
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=93.18 E-value=0.48 Score=34.71 Aligned_cols=48 Identities=13% Similarity=0.366 Sum_probs=30.3
Q ss_pred CCCEEEEEEECCC-----CC--chH----HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 49 AVDAIVFIIDASD-----RS--RFP----ESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 49 ~ad~ii~v~D~~~-----~~--~~~----~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
..+|||+++|+.+ .. .+. .++.-+.++..... ...||.+|+||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg-~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLG-VRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhC-CCCCeEeeeECCCccc
Confidence 5689999999753 11 121 22334444433222 4689999999999864
No 372
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=93.14 E-value=0.37 Score=36.95 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=33.1
Q ss_pred cCCCCCceeEEEECC-----------------EEEEEEEcCCChh----hHHh---HHhhcCCCCEEEEEEECC
Q psy2161 11 MPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQ----ARRV---WRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~----~~~~---~~~~~~~ad~ii~v~D~~ 60 (155)
.+|+.++...+.+.+ .++++.|+||-.. ...+ ....++.||++++|+|..
T Consensus 34 ftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 34 FCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred cccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 356667666665544 2699999999422 1222 233467899999999984
No 373
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.11 E-value=1.2 Score=29.93 Aligned_cols=65 Identities=9% Similarity=0.004 Sum_probs=42.7
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.+.++|+|+..... ....+..+|.++++++.+. .++..+..+++.+.. . ......+|.|+.+...
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~-~--~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA-L--GIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH-c--CCceEEEEEeCCcccc
Confidence 79999999865332 3344678999999997763 345555555555432 1 2345778999998654
No 374
>PRK14974 cell division protein FtsY; Provisional
Probab=93.03 E-value=0.99 Score=34.28 Aligned_cols=67 Identities=16% Similarity=0.116 Sum_probs=37.9
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.++.+.++||+|..... ....... .+.|.+++|+|++..+........+... -..--+++||.|...
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~~~giIlTKlD~~~ 293 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VGIDGVILTKVDADA 293 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CCCCEEEEeeecCCC
Confidence 35679999999975321 1112222 2578999999986543221111111111 124667789999754
No 375
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=92.96 E-value=0.22 Score=33.43 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=36.4
Q ss_pred CEEEEEEEcCCChhhHHhHHh--------hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRD--------YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~--------~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
+....+.|++|-......... ..-..+++++++|+............+...+.. -=++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~------ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF------ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH------CCEEEEecccC
Confidence 467789999997543332221 223588999999986432221111222222221 23558999995
No 376
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=92.12 E-value=0.6 Score=36.65 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=38.4
Q ss_pred CCEEEEEEEcCCChhhHH----hHHhh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~----~~~~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+++.+.++||+|...... ....+ ....+-+++|+|++..+.-.....-+.+. -.+.-+|+||.|-.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLDGH 252 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECccCC
Confidence 358899999999654321 11121 22578899999986543222221222211 23677888999953
No 377
>KOG0448|consensus
Probab=91.96 E-value=0.54 Score=38.72 Aligned_cols=65 Identities=20% Similarity=0.215 Sum_probs=43.2
Q ss_pred EEEEEEcCCCh---hhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 27 VFTTHDLGGHV---QARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 27 ~~~~~Dt~G~~---~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
-+.+.|.||-. ...+....+...+|++|||+.+.+ .+... ++.+...-+. .+.++++-||+|...
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~~----KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSEE----KPNIFILNNKWDASA 275 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhcc----CCcEEEEechhhhhc
Confidence 58899999953 345566777889999999998754 33222 4444444221 345677778889764
No 378
>KOG1486|consensus
Probab=91.82 E-value=0.68 Score=33.86 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=34.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCCch
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRSRF 65 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~~~ 65 (155)
...++++|..+++.|.||.-...+ ..-...+.||.++.|.|++.++.-
T Consensus 101 pGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 101 PGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQ 155 (364)
T ss_pred cceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhH
Confidence 566788999999999998533211 122345689999999999875443
No 379
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=91.60 E-value=3.3 Score=31.75 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=46.7
Q ss_pred ccCCCCCceeEEEE--CC--EEEEEEEcCCChh--------------hHHhHHhhcC--------------CCCEEEEEE
Q psy2161 10 HMPTLHPTSEELSM--GD--IVFTTHDLGGHVQ--------------ARRVWRDYFP--------------AVDAIVFII 57 (155)
Q Consensus 10 ~~pT~~~~~~~~~~--~~--~~~~~~Dt~G~~~--------------~~~~~~~~~~--------------~ad~ii~v~ 57 (155)
+.||+........+ ++ ..+++.||||--. .......|+. .+++++|.+
T Consensus 62 ~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI 141 (373)
T COG5019 62 TSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFI 141 (373)
T ss_pred CCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEe
Confidence 55777665444444 44 7899999999211 0111111111 578999999
Q ss_pred ECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 58 DASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 58 D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.++. +.+..+. ..+..+ + ..+.+|-|+-|+|+..
T Consensus 142 ~Ptg-h~l~~~DIe~Mk~l-s----~~vNlIPVI~KaD~lT 176 (373)
T COG5019 142 RPTG-HGLKPLDIEAMKRL-S----KRVNLIPVIAKADTLT 176 (373)
T ss_pred cCCC-CCCCHHHHHHHHHH-h----cccCeeeeeeccccCC
Confidence 8764 3343332 233333 2 2356777778999754
No 380
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=91.46 E-value=0.56 Score=31.12 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=36.6
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.++.+.+.||+|.. .. ...++..||-++++...+-.+.+.-.+..+. ..-=+++.||+|
T Consensus 90 ~~~D~iiIDtaG~~--~~-~~~~~~~Ad~~ivv~tpe~~D~y~~~k~~~~---------~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG--QS-EVDIASMADTTVVVMAPGAGDDIQAIKAGIM---------EIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC--hh-hhhHHHhCCEEEEEECCCchhHHHHhhhhHh---------hhcCEEEEeCCC
Confidence 46889999999954 22 2347889999999986652222222221111 223467789987
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.56 E-value=2.2 Score=28.68 Aligned_cols=67 Identities=12% Similarity=0.105 Sum_probs=39.2
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+++.+.+.|++|..... .....+. ...+.+++|+|..... ..........+.. + ..-+|.||.|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 45778999999974321 1111111 3489999999985432 2223344443222 2 3667779999754
No 382
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=89.89 E-value=3.2 Score=28.48 Aligned_cols=86 Identities=15% Similarity=0.187 Sum_probs=55.7
Q ss_pred CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCccccccccc
Q psy2161 49 AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQ 126 (155)
Q Consensus 49 ~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (155)
..|.|+|++|.+...++..+..-+..+-... .-++ +.++.+-....+ .+...++.+....
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f-flGK-VCfl~t~a~~~~~~sv~~~~V~kla~~---------------- 125 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF-FLGK-VCFLATNAGRESHCSVHPNEVRKLAAT---------------- 125 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhh-hccc-eEEEEcCCCcccccccCHHHHHHHHHH----------------
Confidence 5899999999999999988877766663222 2244 444444444333 5677777777665
Q ss_pred CccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...+++.+.-.+..+...+-+.|.+.
T Consensus 126 -y~~plL~~~le~~~~~~~lAqRLL~~ 151 (176)
T PF11111_consen 126 -YNSPLLFADLENEEGRTSLAQRLLRM 151 (176)
T ss_pred -hCCCEEEeecccchHHHHHHHHHHHH
Confidence 34567777777777766666655543
No 383
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=89.28 E-value=1.9 Score=30.85 Aligned_cols=68 Identities=9% Similarity=0.107 Sum_probs=43.3
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~piilv~nK~D 94 (155)
+++.+.++||||... ......+..||.+|..+..+. ..+......+..+... ....+.|..++.|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~-~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTP-LDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 458999999999764 444556778999988876642 3343333443333211 1123578889999986
No 384
>KOG1487|consensus
Probab=89.19 E-value=0.28 Score=35.93 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=35.6
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|.+.++||+|-.. .++..- -....+.+.+||-.+.|++++++-+.+++
T Consensus 232 Vp~iyvLNkIdsIS---iEELdi-------------------i~~iphavpISA~~~wn~d~lL~~mweyL 280 (358)
T KOG1487|consen 232 VPCIYVLNKIDSIS---IEELDI-------------------IYTIPHAVPISAHTGWNFDKLLEKMWEYL 280 (358)
T ss_pred eeeeeeecccceee---eeccce-------------------eeeccceeecccccccchHHHHHHHhhcc
Confidence 68999999998532 222211 12335789999999999999999887765
No 385
>KOG0780|consensus
Probab=89.03 E-value=2.3 Score=33.10 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=32.9
Q ss_pred ECCEEEEEEEcCCChhh-HHhHHhh-----cCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 23 MGDIVFTTHDLGGHVQA-RRVWRDY-----FPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~-~~~~~~~-----~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
-+++.+.+.||+|.... .++.... .-+-|-+|||+|++-.+.-+.....+.+.
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 35689999999996442 2222211 12588999999998655544444444433
No 386
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.79 E-value=1.9 Score=30.67 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=43.3
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.+.++|+|+.. .......+..||.+++++..+. .++..+...+..+.... ....++-+|.|+.|...
T Consensus 115 ~D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~~-~s~~~~~~~~~~l~~~~-~~~~~~~iv~n~~~~~~ 182 (246)
T TIGR03371 115 RDWVLIDVPRGP--SPITRQALAAADLVLVVVNADA-ACYATLHQQALALFAGS-GPRIGPHFLINQFDPAR 182 (246)
T ss_pred CCEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCCH-HHHHHHHHHHHHHhhcc-cccccceEEeeccCcch
Confidence 479999999854 3445566778999999997642 33444443333333311 12456778999998643
No 387
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=88.60 E-value=4.6 Score=27.08 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=42.9
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
.++.+.+.|+|+...-.. ...+ ..+|.++++...+ +.+...+..+++.+.+. .....-+|.|+.+.
T Consensus 66 ~~yD~VIiD~pp~~~~~~--~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~---~~~~~gvv~N~~~~ 133 (169)
T cd02037 66 GELDYLVIDMPPGTGDEH--LTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKV---NIPILGVVENMSYF 133 (169)
T ss_pred CCCCEEEEeCCCCCcHHH--HHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhc---CCCeEEEEEcCCcc
Confidence 568899999998643222 1222 5789999998765 35566666666666432 12345578899874
No 388
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=87.82 E-value=2.1 Score=31.09 Aligned_cols=69 Identities=12% Similarity=0.102 Sum_probs=39.7
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl 95 (155)
++.+.+.||+|...... ....+..||.+++++..+ ..++..+...+..+.......+.++ -+|.|+.+.
T Consensus 115 ~yD~vIIDt~g~~~~~~-~~~al~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCGG-FAAPLNYADYALIVTDND-FDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccccc-chhhhhhcCEEEEEecCC-cccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 47899999987643221 222367899999988664 3344444443333321111134443 477899984
No 389
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=87.80 E-value=1.9 Score=31.35 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~D 94 (155)
+++.+.++||+|...... ....+..||.+|+++..+ ..++..+...+..+.......+.+++ ++.|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 358899999987643222 223366799999988653 44455544444433221112345543 7889976
No 390
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=87.76 E-value=2.3 Score=25.93 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=31.0
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD 73 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~ 73 (155)
+.+.++|+|+..... ....+..+|.++++++.+ ..++.....+++
T Consensus 40 ~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 40 YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 678999999875332 235667799999999775 345555555544
No 391
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=87.47 E-value=4.7 Score=30.55 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcC--------CCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~--------~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
+....+++|.|--...+....+.. .-|+++-|+|+...... ......+.+.+. .-=++++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence 356788999996544443333322 46789999999764332 223344444432 234678999999
Q ss_pred CCcCCHHHHHhhhc
Q psy2161 96 FDAASEDEVRHFFG 109 (155)
Q Consensus 96 ~~~~~~~~i~~~~~ 109 (155)
.+......+...+.
T Consensus 158 v~~~~l~~l~~~l~ 171 (323)
T COG0523 158 VDAEELEALEARLR 171 (323)
T ss_pred CCHHHHHHHHHHHH
Confidence 77443444444433
No 392
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=86.29 E-value=3.1 Score=29.78 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=41.6
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
+.+.++|+|+.... .....+..||.+++++..+ ..++..+...++.+.. .. ..++.++.|+++.
T Consensus 112 ~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~-~~--~~~~~iviN~~~~ 175 (261)
T TIGR01968 112 FDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEA-KG--IEKIHLIVNRLRP 175 (261)
T ss_pred CCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHH-cC--CCceEEEEeCcCc
Confidence 78999999886532 2334466799999998764 3445555555544432 22 2367888999975
No 393
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=85.85 E-value=4.4 Score=28.05 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=41.0
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.+.+.++|+|..... .......+.+|.+++|++... .+...+...++.+.+ . ....+-+|+||.+..
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~-~--~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGE-IKKRDVQKAKEQLEQ-T--GSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh-C--CCCEEEEEEeCcccc
Confidence 477899999863211 112234457999999998753 344555555444432 1 223567788999864
No 394
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=85.05 E-value=2 Score=31.28 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=25.6
Q ss_pred CccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
..-.+++..||+++.|++++++.+.+.+|
T Consensus 238 ~~~~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 238 GLLVPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred CCEEEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 34578999999999999999999998875
No 395
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=84.03 E-value=5.3 Score=28.41 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=40.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++.+.++|+|+.... .....+..||.++++++.+- .++.......+.. ... ......++.|+.+..
T Consensus 108 ~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~-~~~--~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEI-SSITDALKTKIVA-EKL--GTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHH-Hhc--CCceEEEEEECCCch
Confidence 478999999986543 22334557999999998753 3444433333222 222 122456899999863
No 396
>CHL00175 minD septum-site determining protein; Validated
Probab=83.58 E-value=4.4 Score=29.63 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=46.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-----cC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-----AA 99 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-----~~ 99 (155)
.+.+.++|||+... ......+..||.+++|++.+ +.++..+...+..+.. .. ...+-+|.|+.+... ..
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~-~~--~~~~~lvvN~~~~~~~~~~~~~ 199 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEA-NG--IYNVKLLVNRVRPDMIQANDMM 199 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHH-cC--CCceEEEEeccChhhhhhhccc
Confidence 57899999998653 23334456799999998764 3444444444444432 22 234667889997421 22
Q ss_pred CHHHHHhhhc
Q psy2161 100 SEDEVRHFFG 109 (155)
Q Consensus 100 ~~~~i~~~~~ 109 (155)
...++.+.++
T Consensus 200 ~~~~l~~~~~ 209 (281)
T CHL00175 200 SVRDVQEMLG 209 (281)
T ss_pred cHHHHHHHhC
Confidence 3445555554
No 397
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=83.21 E-value=4.1 Score=28.47 Aligned_cols=72 Identities=11% Similarity=-0.071 Sum_probs=39.0
Q ss_pred CCEEEEEEEcCCChhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC-cEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV-PILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~-piilv~nK~Dl~ 96 (155)
+.+.+.++|++|......... ...+.||.++.+++.+. .++..+...++.+.......+. ...++.|+.+..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~-~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEF-MALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccccccccccCcEEEEEecccH-HHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 358999999987553222211 11247999999987642 2333333333322211111233 355899999853
No 398
>KOG2655|consensus
Probab=82.67 E-value=20 Score=27.68 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.+++++|.+..+. ..+.... ..+..+ . ..+.+|-|+-|+|...
T Consensus 129 RVH~cLYFI~P~g-hgL~p~Di~~Mk~l-~----~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 129 RVHCCLYFISPTG-HGLKPLDIEFMKKL-S----KKVNLIPVIAKADTLT 172 (366)
T ss_pred ceEEEEEEeCCCC-CCCcHhhHHHHHHH-h----ccccccceeeccccCC
Confidence 6889999998763 2333332 223333 1 2456777777999754
No 399
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=82.04 E-value=12 Score=27.72 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=45.4
Q ss_pred EEEEEEEcC-CChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 26 IVFTTHDLG-GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 26 ~~~~~~Dt~-G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
..+.+.|+| |.- -+ .-..+.+||.+++|--.|- -.+...+..++-. ++. ++|..+|+||.+.-.. ++
T Consensus 164 ~~~~IIDsaaG~g--Cp-Vi~sl~~aD~ai~VTEPTp-~glhD~kr~~el~-~~f---~ip~~iViNr~~~g~s----~i 231 (284)
T COG1149 164 ADLLIIDSAAGTG--CP-VIASLKGADLAILVTEPTP-FGLHDLKRALELV-EHF---GIPTGIVINRYNLGDS----EI 231 (284)
T ss_pred cceeEEecCCCCC--Ch-HHHhhccCCEEEEEecCCc-cchhHHHHHHHHH-HHh---CCceEEEEecCCCCch----HH
Confidence 367788875 322 11 2234779999999976652 3334444333333 332 7999999999964322 56
Q ss_pred HhhhcccCc
Q psy2161 105 RHFFGLYGL 113 (155)
Q Consensus 105 ~~~~~~~~~ 113 (155)
.++...+++
T Consensus 232 e~~~~e~gi 240 (284)
T COG1149 232 EEYCEEEGI 240 (284)
T ss_pred HHHHHHcCC
Confidence 666665443
No 400
>KOG1547|consensus
Probab=81.97 E-value=12 Score=27.39 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=23.6
Q ss_pred CCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 49 AVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 49 ~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.++.++|.+..+. .++..+. ..+..+ . .-+.++-|+-|.|...
T Consensus 155 RVHcclyFi~ptG-hsLrplDieflkrL-t----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 155 RVHCCLYFIPPTG-HSLRPLDIEFLKRL-T----EVVNVVPVIAKADTLT 198 (336)
T ss_pred eEEEEEEEeCCCC-CccCcccHHHHHHH-h----hhheeeeeEeeccccc
Confidence 5678888887764 3333222 222222 1 1245666777999644
No 401
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.94 E-value=9 Score=23.27 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=33.4
Q ss_pred CEEEEEE-EcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 25 DIVFTTH-DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 25 ~~~~~~~-Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
|.++... -.+|........+..++.||++|++.|.-+-.....+ .+.. ...++|++.+
T Consensus 23 G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~v----k~~a---kk~~ip~~~~ 81 (97)
T PF10087_consen 23 GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKV----KKAA---KKYGIPIIYS 81 (97)
T ss_pred CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHH----HHHH---HHcCCcEEEE
Confidence 3445555 1123333344577779999999999987653333322 2222 2237898885
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.82 E-value=5.2 Score=31.61 Aligned_cols=64 Identities=16% Similarity=0.056 Sum_probs=35.5
Q ss_pred EEEEEEEcCCChhhHHh----HH--hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQARRV----WR--DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~----~~--~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
..+.++||+|....... .. .....+|.+++|+|++... ............ -...-+|.||.|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~----l~i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEA----VGIGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhc----CCCCEEEEecccCC
Confidence 47899999997553221 11 1133688999999986542 111222222110 11345667888853
No 403
>PRK10818 cell division inhibitor MinD; Provisional
Probab=81.37 E-value=6.6 Score=28.47 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=42.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC-----CCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD-----DALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~-----~~~~~~piilv~nK~Dl~ 96 (155)
.+.+.+.|+|+..... ....+..||.++++++.+ ..++..+...++.+... ....+.+..++.|+.|..
T Consensus 113 ~yd~viiD~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 5889999998766433 233457799999998776 34454554555444211 111123457788988854
No 404
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=81.29 E-value=4.6 Score=31.81 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=35.5
Q ss_pred CCEEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
.++.+.+.||||...... .... .-..+.+++|+|++..+ ............. ...=+|.||.|-
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~-~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v----~i~giIlTKlD~ 251 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKE-ILNPDEILLVVDAMTGQ---DAVNTAKTFNERL----GLTGVVLTKLDG 251 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHH-hhCCceEEEEEeccchH---HHHHHHHHHHhhC----CCCEEEEeCccC
Confidence 457899999999533211 1112 22578899999986432 2222223322111 134556788884
No 405
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=81.24 E-value=4.8 Score=29.21 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=39.9
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
+++.+.++||+|....... ...+..||.+++++..+ ..++..+...+..+.......+.+ ..+|.|+.+..
T Consensus 114 ~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~-~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~ 185 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAAND-FDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDAT 185 (268)
T ss_pred ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCc-hhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCChH
Confidence 3588999999875432211 12356799999887543 334444444443332211113444 45788999754
No 406
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.75 E-value=6.7 Score=29.11 Aligned_cols=69 Identities=13% Similarity=0.087 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl 95 (155)
++.+.++||+|....... ...+..||.++++++.+ +.++..+...++.+.......+.+ .-++.|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCcceechh-hhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 578999999876322222 22356799999988664 334444433333222111122333 3478899874
No 407
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=80.74 E-value=2.2 Score=29.04 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=44.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.+.+.|+|+..... ....+..+|.+|++++.+. .+......++..+.... .....+-+|.|+.+...
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~-~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLG-KKLKIIGVVINRVDPGN 162 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHT-HTEEEEEEEEEEETSCC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhc-cccceEEEEEeeeCCCc
Confidence 778999999865433 5556778999999998864 33555555554443211 11236788999998653
No 408
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.28 E-value=3.9 Score=36.29 Aligned_cols=71 Identities=17% Similarity=0.247 Sum_probs=44.2
Q ss_pred EEEEEEEcCCCh--------hhHHhHHhh---------cCCCCEEEEEEECCCCCc---h------HHHHHHHHHHHhCC
Q psy2161 26 IVFTTHDLGGHV--------QARRVWRDY---------FPAVDAIVFIIDASDRSR---F------PESKYELDSLLADD 79 (155)
Q Consensus 26 ~~~~~~Dt~G~~--------~~~~~~~~~---------~~~ad~ii~v~D~~~~~~---~------~~~~~~l~~~~~~~ 79 (155)
-+-.++||+|.. .-...|..+ .+.-+|||+.+|+++.-+ - ..++.-+.++....
T Consensus 174 deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL 253 (1188)
T COG3523 174 DEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL 253 (1188)
T ss_pred cceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 567889999842 234556644 236889999999865211 1 11223344443222
Q ss_pred CCCCCcEEEEEeCCCcCC
Q psy2161 80 ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~ 97 (155)
....|+.+++||.|+..
T Consensus 254 -~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 254 -HARLPVYLVLTKADLLP 270 (1188)
T ss_pred -ccCCceEEEEecccccc
Confidence 24689999999999753
No 409
>KOG1534|consensus
Probab=79.46 E-value=5.9 Score=28.36 Aligned_cols=121 Identities=12% Similarity=0.213 Sum_probs=62.5
Q ss_pred EEEEEEEcCCChh-------hHHhHHhhc--CCCCEEEEEEECC---CCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 26 IVFTTHDLGGHVQ-------ARRVWRDYF--PAVDAIVFIIDAS---DRSRF-PESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-------~~~~~~~~~--~~ad~ii~v~D~~---~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
-.+-++|+|||-. .....++.- .---+++|++|+. +...| .....-+.... .-..|-|=|++|
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi----~lE~P~INvlsK 173 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMI----SLEVPHINVLSK 173 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHH----HhcCcchhhhhH
Confidence 4578999999844 122222211 1123567777763 22222 22222222221 125899999999
Q ss_pred CCcCCcCCHHHHHhhhcccCc----------cCCCccccccc----ccCc-cEEEEEeeeccCCChHHHHHHH
Q psy2161 93 IDIFDAASEDEVRHFFGLYGL----------TTGKEFTSREI----LQMR-PIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 93 ~Dl~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~~----~~~~-~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
.||....+.+++..++..... ..+|+..+.+. .... -+.+++...-+.++++.++..+
T Consensus 174 MDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~I 246 (273)
T KOG1534|consen 174 MDLLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYI 246 (273)
T ss_pred HHHhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHH
Confidence 999877777777777653211 11222222111 1111 2356666666666666665554
No 410
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.35 E-value=10 Score=29.99 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCEEEEEEEcCCChhhHH-hH-----HhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 24 GDIVFTTHDLGGHVQARR-VW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-~~-----~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
+++.+.++||+|...... ++ -+-.-+.|-+++|+|+.-.+.--.....|.+-
T Consensus 181 ~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 181 EGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred cCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 347899999999755322 11 12233788999999997654444433444433
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=77.15 E-value=11 Score=29.81 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=34.8
Q ss_pred CCEEEEEEEcCCChhhH----Hh---HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQAR----RV---WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~---~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
.++.+.++||+|..... .. .... -..+.+++|+|++.. .........+.... ...-+|.||.|-
T Consensus 182 ~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~-v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~ 252 (433)
T PRK10867 182 NGYDVVIVDTAGRLHIDEELMDELKAIKAA-VNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDG 252 (433)
T ss_pred cCCCEEEEeCCCCcccCHHHHHHHHHHHHh-hCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccC
Confidence 35789999999954321 11 1121 256788999998642 22222223332111 134566699984
No 412
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=77.05 E-value=15 Score=27.48 Aligned_cols=78 Identities=10% Similarity=0.079 Sum_probs=49.2
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
.+.+.++|+|+... ......+..||.++++++.+ ..++..+..++..+... +..+-+|.|+.. ......+++
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~~~----~~~~~lVv~~~~-~~~~~~~~i 275 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPAD-VRAVAAAARVCPELGRR----NPDLRLVVRGPA-PAGLDPEEI 275 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHhhh----CCCeEEEEeCCC-CCCCCHHHH
Confidence 37899999998753 33556678899999998664 34455555666555321 224455567543 234566777
Q ss_pred Hhhhcc
Q psy2161 105 RHFFGL 110 (155)
Q Consensus 105 ~~~~~~ 110 (155)
.+.++.
T Consensus 276 ~~~lg~ 281 (322)
T TIGR03815 276 AESLGL 281 (322)
T ss_pred HHHhCC
Confidence 776654
No 413
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=77.03 E-value=19 Score=25.32 Aligned_cols=67 Identities=9% Similarity=-0.000 Sum_probs=42.3
Q ss_pred EEEEEEEcCCChh-hHHhHHhhcCC--CCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQ-ARRVWRDYFPA--VDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-~~~~~~~~~~~--ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+.+.++|+|.... ........+.. ++.+++|+..+ ..+...+...++.+.... -...-+|+|+....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~-~~s~~~~~~~l~~l~~~~---~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPE-KLPLYETERAITELALYG---IPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCC-ccHHHHHHHHHHHHHHCC---CCCCEEEEeCCcCc
Confidence 8899999986432 23333444444 47899998765 455666666666664322 22456888998653
No 414
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=76.87 E-value=8.7 Score=26.77 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=35.2
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+++.+.++||+|..... ..+..+++ ..+-+++|++++... +..... ....+.. .+-=++.+|.|-..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~-~~~~~~~----~~~~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQA-LAFYEAF----GIDGLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHH-HHHHHHS----STCEEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHH-HHHhhcc----cCceEEEEeecCCC
Confidence 45779999999953322 11111111 577899999987532 222222 2221111 13346689999643
No 415
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=76.66 E-value=5.2 Score=29.36 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=25.5
Q ss_pred CccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 127 MRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 127 ~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
..-++++..||.++.|+..+++.+.+.+|
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 34578999999999999999999998875
No 416
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=76.11 E-value=16 Score=27.90 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=25.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhc----C---CCCEEEEEEECCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYF----P---AVDAIVFIIDASD 61 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~----~---~ad~ii~v~D~~~ 61 (155)
+....+.+++|--...+....+. . .-++++.|+|+.+
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 35678899999765544444331 1 4678999999964
No 417
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=75.73 E-value=10 Score=29.34 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=34.0
Q ss_pred CCCCCceeEEEECC-----------------EEEEEEEcCCChhh-------HHhHHhhcCCCCEEEEEEECC
Q psy2161 12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA-------RRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~-------~~~~~~~~~~ad~ii~v~D~~ 60 (155)
.|+.++...+.+.+ .++++.|.||-..- -......++.+|++++|+|..
T Consensus 36 tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 36 TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred CCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 45677766666544 47899999995431 123444578999999999984
No 418
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=74.54 E-value=8.3 Score=27.74 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=43.2
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch--HHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF--PESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
++.|.+.|+.|..+ ......+..+|.+|+=+-.+..+-- .....|+.+..+ .....+|.-++.++..-
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~-~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEK-AERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHH-hhCCCCCeeEEEecCCc
Confidence 47899999988663 3344556679988887655532211 222355555542 22356899999999874
No 419
>PRK13556 azoreductase; Provisional
Probab=73.48 E-value=11 Score=26.30 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=36.2
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC------------CCCCCcEEEEEeC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD------------ALTDVPILILGNK 92 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~------------~~~~~piilv~nK 92 (155)
....++.||++|+++..-+..--..++.|++.+.... .+.++|++++.+-
T Consensus 83 ~~~~l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~ts 144 (208)
T PRK13556 83 YLNQFLEADKVVFAFPLWNFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHHHHCCEEEEeccccccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeC
Confidence 4455779999999998876544566788998887531 2457888888763
No 420
>PRK13555 azoreductase; Provisional
Probab=72.55 E-value=11 Score=26.47 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK 92 (155)
.+...++.||.+++++..-+..--..++.|++.+... ..+.++|++++.+.
T Consensus 82 ~~~~~~~~AD~lvi~~P~~n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~ 144 (208)
T PRK13555 82 QYLNQFLEADKVVFAFPLWNFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGAR 144 (208)
T ss_pred HHHHHHHHcCEEEEEcCcccccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcC
Confidence 3456677999999999887655556678899888753 12457888887663
No 421
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=71.74 E-value=6.9 Score=29.03 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=41.7
Q ss_pred EEEEEEEcC---CChhhHHhHHhhcCCCC-EEEEEEEC-CCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 26 IVFTTHDLG---GHVQARRVWRDYFPAVD-AIVFIIDA-SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~---G~~~~~~~~~~~~~~ad-~ii~v~D~-~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.+++++=-| |+...+...+..++.|. +|.+|+|. ||.+ ++.+++.-....++||.++++...+.
T Consensus 119 Tr~~vy~qPp~~~~p~IKE~vR~~I~~A~kVIAIVMD~FTD~d-------If~DLleAa~kR~VpVYiLLD~~~~~ 187 (284)
T PF07894_consen 119 TRATVYFQPPKDGQPHIKEVVRRMIQQAQKVIAIVMDVFTDVD-------IFCDLLEAANKRGVPVYILLDEQNLP 187 (284)
T ss_pred ceEEEEeCCCCCCCCCHHHHHHHHHHHhcceeEEEeeccccHH-------HHHHHHHHHHhcCCcEEEEechhcCh
Confidence 566666655 45556777788888776 67777887 5543 33333332334579999999988753
No 422
>KOG1486|consensus
Probab=71.59 E-value=12 Score=27.64 Aligned_cols=49 Identities=18% Similarity=0.122 Sum_probs=37.5
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+++-|.||+|- ++.+++....... .-+.+|+-..-|++.+++.+.+.+
T Consensus 239 ~~ClYvYnKID~---vs~eevdrlAr~P-------------------nsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ---VSIEEVDRLARQP-------------------NSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EEEEEEeeccce---ecHHHHHHHhcCC-------------------CcEEEEeccccCHHHHHHHHHHHh
Confidence 699999999994 6677776655541 246678888899999999888765
No 423
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=70.90 E-value=14 Score=26.69 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCChhhHHhH-HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCC
Q psy2161 25 DIVFTTHDLGGHVQARRVW-RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKI 93 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~-~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~ 93 (155)
++.+.++||+|........ .....-||.+++++..+. .++..+...+..+.......+.++. ++.|+.
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~-~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~ 185 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM-MALYAANNICKGILKYAKSGGVRLGGLICNSR 185 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCch-HHHHHHHHHHHHHHHhCccCCCceEEEEEecC
Confidence 4889999998864222221 122335999999987653 3444444444333221112245554 444653
No 424
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=70.52 E-value=2.6 Score=26.59 Aligned_cols=9 Identities=33% Similarity=0.331 Sum_probs=5.6
Q ss_pred EEeCCCcCC
Q psy2161 89 LGNKIDIFD 97 (155)
Q Consensus 89 v~nK~Dl~~ 97 (155)
++||+|++.
T Consensus 1 AaNK~D~~~ 9 (109)
T PF08438_consen 1 AANKADLPA 9 (109)
T ss_dssp EEE-GGG-S
T ss_pred CCccccccc
Confidence 589999854
No 425
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=70.32 E-value=5.7 Score=29.10 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=25.2
Q ss_pred ccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 128 RPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 128 ~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.-++++..||.++.|+..+++.+.+.+|
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHCC
Confidence 4578999999999999999999998875
No 426
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=69.81 E-value=10 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=24.9
Q ss_pred EEEEEEEcCCChh----hHHh---HHhhcCCCCEEEEEEECC
Q psy2161 26 IVFTTHDLGGHVQ----ARRV---WRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 26 ~~~~~~Dt~G~~~----~~~~---~~~~~~~ad~ii~v~D~~ 60 (155)
..++|+|.+|--. ...+ ...-++.+|+|+.|+|..
T Consensus 67 ~~ve~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 67 APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred eeeEEEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 5799999998422 2222 334467899999999886
No 427
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=69.13 E-value=13 Score=28.11 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=36.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcC--------CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~--------~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
....+.+|.|--...+....++. .-++++.|+|+.+..............+. .-=++|+||+|+.+
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~------~AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG------YADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH------hCCEEEEeccccCC
Confidence 45678999997655444444322 24789999999653221111111212211 23367789999865
No 428
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=68.32 E-value=30 Score=22.50 Aligned_cols=70 Identities=21% Similarity=0.146 Sum_probs=41.7
Q ss_pred CEEEEEEEcCCCh---------------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH--hCCCCCCCcEE
Q psy2161 25 DIVFTTHDLGGHV---------------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL--ADDALTDVPIL 87 (155)
Q Consensus 25 ~~~~~~~Dt~G~~---------------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~--~~~~~~~~pii 87 (155)
+.++.++|..... ..-..+...+..||++|++...-...--...+..++.+. ......++|+.
T Consensus 31 g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~~~~~~~~K~~~ 110 (152)
T PF03358_consen 31 GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCWFRRALRGKPVA 110 (152)
T ss_dssp TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHTHTTTTTTSEEE
T ss_pred CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccccccccCCCEEE
Confidence 5677888877631 111223455678999999987654333333444444442 24556789998
Q ss_pred EEEeCCC
Q psy2161 88 ILGNKID 94 (155)
Q Consensus 88 lv~nK~D 94 (155)
++.+=-.
T Consensus 111 ~i~~~g~ 117 (152)
T PF03358_consen 111 IIAVGGG 117 (152)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 8865433
No 429
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=68.09 E-value=40 Score=23.90 Aligned_cols=54 Identities=6% Similarity=-0.132 Sum_probs=33.7
Q ss_pred cCCCCCceeEEEE---CCEEEEEEEcCCChhh------HHhHHhhcCC--CCEEEEEEECCCCCc
Q psy2161 11 MPTLHPTSEELSM---GDIVFTTHDLGGHVQA------RRVWRDYFPA--VDAIVFIIDASDRSR 64 (155)
Q Consensus 11 ~pT~~~~~~~~~~---~~~~~~~~Dt~G~~~~------~~~~~~~~~~--ad~ii~v~D~~~~~~ 64 (155)
..|.|+-...... .+..+.++||+|.... .......+.. ++++||..+.+....
T Consensus 42 ~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 42 QTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred CCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEEEeccCcccHH
Confidence 4556665444444 3589999999995432 2223334444 899999988765433
No 430
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=67.99 E-value=11 Score=25.46 Aligned_cols=50 Identities=18% Similarity=0.053 Sum_probs=32.4
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
.+...+..||++|++...-+..--..++.+++.+. ...+.++|++++.+-
T Consensus 61 ~~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~-~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 61 RILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVD-PNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC-HhHhCCCEEEEEEec
Confidence 34455778999999986654333344566666542 234568999998873
No 431
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=66.36 E-value=23 Score=20.42 Aligned_cols=64 Identities=9% Similarity=-0.012 Sum_probs=35.5
Q ss_pred EEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 27 VFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.+.+.|+++....... .......+|.++++++.+.. +........+...........+..++.|
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 6789999987543321 24446689999999977543 3333333322232222333455655554
No 432
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=65.69 E-value=40 Score=23.00 Aligned_cols=86 Identities=15% Similarity=0.124 Sum_probs=51.1
Q ss_pred cCCCCEEEEEEECCC-------CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcc
Q psy2161 47 FPAVDAIVFIIDASD-------RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 119 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~-------~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~ 119 (155)
++....=.+++|..+ .+-..++..|+.++.+.. ....+++|-|-.-..+.....++......
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~d~~~~~a~~~~~~--------- 104 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSDDPDGERAEALEKA--------- 104 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC--CCCeEEEEECCCCcccCccHHHHHHHHHh---------
Confidence 555666667777755 222366778888886432 12368999997643322223333333222
Q ss_pred cccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 120 TSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 120 ~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.+++++.-+++...+..++..++.
T Consensus 105 --------lgIpvl~h~~kKP~~~~~i~~~~~ 128 (168)
T PF09419_consen 105 --------LGIPVLRHRAKKPGCFREILKYFK 128 (168)
T ss_pred --------hCCcEEEeCCCCCccHHHHHHHHh
Confidence 235677777888877777777764
No 433
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=65.58 E-value=13 Score=25.03 Aligned_cols=50 Identities=20% Similarity=0.096 Sum_probs=32.2
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
.+...+..||++|++...-+..--..++.+++.+ ....+.++|+.++.+-
T Consensus 58 ~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~-~~~~l~~K~v~~~~~g 107 (171)
T TIGR03567 58 AATAQVAQADGVVVATPVYKASYSGVLKALLDLL-PQRALRGKVVLPIATG 107 (171)
T ss_pred HHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhC-ChhhhCCCEEEEEEcC
Confidence 3455577899999998665433334456666655 2234567899888764
No 434
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=64.16 E-value=27 Score=27.10 Aligned_cols=73 Identities=12% Similarity=0.008 Sum_probs=36.6
Q ss_pred CCEEEEEEEcCCChhhHHh---HHhhc---CCCCEEEEEEECCC-CCchHHHHHHHHHHHhCCCCC-CCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRV---WRDYF---PAVDAIVFIIDASD-RSRFPESKYELDSLLADDALT-DVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~---~~~~~---~~ad~ii~v~D~~~-~~~~~~~~~~l~~~~~~~~~~-~~piilv~nK~Dl 95 (155)
.+..+.++||+|....... ....+ ....-.++|++++. .+...++..-+.......... ..+-=++.+|.|-
T Consensus 214 ~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 214 RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 4578999999996532221 11112 23445688998865 333333322233321111000 0134566799995
Q ss_pred C
Q psy2161 96 F 96 (155)
Q Consensus 96 ~ 96 (155)
.
T Consensus 294 t 294 (374)
T PRK14722 294 A 294 (374)
T ss_pred C
Confidence 3
No 435
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=63.79 E-value=38 Score=28.76 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=44.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.+.+.++|+|+....... .....-+|++++|+.. +......+...++.+... .....-+|.|+.|..
T Consensus 655 ~yD~IiID~pp~~~~~d~-~~l~~~~D~vl~v~~~-~~~~~~~~~~~~~~l~~~---~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 655 YSDCVVVDVGTADPVRDM-RAAARLAIIMLLVTAY-DRVVVECGRADAQGISRL---NGEVTGVFLNMLDPN 721 (754)
T ss_pred hCCEEEEcCCCcchhHHH-HHhhhhCCeEEEEEEe-CceeHHHHHHHHHHHHhc---CCceEEEEecCCChh
Confidence 488999999987653332 2334569999999875 345566666666666422 123455889999854
No 436
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=62.81 E-value=29 Score=24.00 Aligned_cols=49 Identities=22% Similarity=0.051 Sum_probs=35.2
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC--------CCCCCcEEEEEeC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD--------ALTDVPILILGNK 92 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~--------~~~~~piilv~nK 92 (155)
...+..||.|||.+..-.-..-..++.|++.+.... .+.+++++++.+-
T Consensus 56 q~~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~ 112 (184)
T PRK04930 56 QALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVITT 112 (184)
T ss_pred HHHHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEEC
Confidence 345778999999998865555566789999988531 2457777777663
No 437
>KOG4273|consensus
Probab=62.66 E-value=7 Score=28.68 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 50 VDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 50 ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
..+++.|||++....+..+..|+...- .+. ---.+.++||.|..
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htd-ins--fdillcignkvdrv 122 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTD-INS--FDILLCIGNKVDRV 122 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhccccc-ccc--chhheecccccccc
Confidence 457889999999888888888876542 111 12466778999964
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.17 E-value=37 Score=25.99 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=37.3
Q ss_pred CCEEEEEEEcCCChhhHH-------hHHhhcCCCCE-----EEEEEECCCC-CchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 24 GDIVFTTHDLGGHVQARR-------VWRDYFPAVDA-----IVFIIDASDR-SRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~-----ii~v~D~~~~-~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
.++-+.+.||+|+..... .....++..+. +++++|++-. +.+..++ .+.+... --=+++
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk-~F~eav~-------l~GiIl 291 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAK-IFNEAVG-------LDGIIL 291 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHH-HHHHhcC-------CceEEE
Confidence 358899999999754221 12233333443 8888899753 4555543 3444421 233567
Q ss_pred eCCCc
Q psy2161 91 NKIDI 95 (155)
Q Consensus 91 nK~Dl 95 (155)
+|.|-
T Consensus 292 TKlDg 296 (340)
T COG0552 292 TKLDG 296 (340)
T ss_pred Eeccc
Confidence 99994
No 439
>PRK00170 azoreductase; Reviewed
Probab=61.69 E-value=25 Score=24.15 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=33.9
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNK 92 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK 92 (155)
...+..||++|++...-.-.--..++.|++.+... ..+.+++++++.+-
T Consensus 81 ~~~i~~AD~iV~~sP~y~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 141 (201)
T PRK00170 81 LEEFLAADKIVIAAPMYNFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSR 141 (201)
T ss_pred HHHHHHCCEEEEeecccccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeC
Confidence 45577899999999876544445667888887531 12467888888864
No 440
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=60.84 E-value=29 Score=23.85 Aligned_cols=52 Identities=21% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--------CCCCCCcEEEEEeCCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--------DALTDVPILILGNKID 94 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--------~~~~~~piilv~nK~D 94 (155)
-...+..||.+|+.+....-.--..++.|++++... ..+.+++++++.+--.
T Consensus 49 eq~~l~~aD~iV~~fP~~w~~~Pa~lK~wiD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~ 108 (176)
T PRK00871 49 EQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLWAVTTGG 108 (176)
T ss_pred HHHHHHhCCEEEEEcChhhccccHHHHHHHHHHhhCCccccCCCCCcCCCEEEEEEeCCC
Confidence 344477899999999886544456678899988852 1245677777776443
No 441
>PRK09739 hypothetical protein; Provisional
Probab=59.92 E-value=25 Score=24.37 Aligned_cols=52 Identities=15% Similarity=-0.056 Sum_probs=35.2
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC-------CCCCCCcEEEEEeCC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD-------DALTDVPILILGNKI 93 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~-------~~~~~~piilv~nK~ 93 (155)
.+...+..||++|+++..-.-.--..++.|++.+... ..+.+++++++.+--
T Consensus 72 ~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g 130 (199)
T PRK09739 72 QLYSELLEHDALVFVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVG 130 (199)
T ss_pred HHHHHHHhCCEEEEECchhhhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecC
Confidence 3445577899999999776544446668888887531 224567887777533
No 442
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=59.67 E-value=22 Score=29.01 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=20.8
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
-++|+++++||.|.......+.+.+++..
T Consensus 371 FGvPvVVAINKFd~DTe~Ei~~I~~~c~e 399 (557)
T PRK13505 371 FGVPVVVAINKFVTDTDAEIAALKELCEE 399 (557)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 47999999999997543344556666654
No 443
>KOG1249|consensus
Probab=59.39 E-value=22 Score=28.97 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.1
Q ss_pred EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 131 ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 131 ~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+|+++|.|++++.-.+.+..
T Consensus 187 ~~~~~r~ktgyg~eeLI~~lvd~~ 210 (572)
T KOG1249|consen 187 HVDLIRAKTGYGIEELIVMLVDIV 210 (572)
T ss_pred hhhhhhhhhcccHHHHHHHhhhee
Confidence 356789999999999999887654
No 444
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=58.32 E-value=11 Score=25.58 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=38.3
Q ss_pred CEEEEEEEcCCChhhHHh------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc
Q psy2161 25 DIVFTTHDLGGHVQARRV------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA 98 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~ 98 (155)
+....+.+++|-...... +...+ ..+.++.|+|+.+..........+...+.. -=++++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~-~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDF-RLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHE-SESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccc-cccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCCh
Confidence 346677888885443333 22223 468999999997643333333444444422 23677999998653
No 445
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=57.47 E-value=16 Score=23.49 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=23.7
Q ss_pred cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 126 QMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.++.+||-+++.+.+.++...++|
T Consensus 93 e~eRv~~~wiSa~E~ekf~e~~~efv~~i 121 (132)
T COG1908 93 EPERVRVLWISAAEGEKFAETINEFVERI 121 (132)
T ss_pred CcceEEEEEEehhhHHHHHHHHHHHHHHH
Confidence 44678999999999999988888776654
No 446
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=56.83 E-value=23 Score=24.55 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=31.4
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
.+...++.||++|++...-+..--..++.+++.+ ....+.++|++++++-
T Consensus 59 ~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l-~~~~l~~K~v~iiat~ 108 (191)
T PRK10569 59 TFTEQLAQADGLIVATPVYKASFSGALKTLLDLL-PERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC-ChhhhCCCEEEEEEec
Confidence 3445577899999998665432223334555444 2234568899998885
No 447
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=56.60 E-value=19 Score=27.83 Aligned_cols=17 Identities=29% Similarity=0.215 Sum_probs=14.0
Q ss_pred CCCCcEEEEEeCCCcCC
Q psy2161 81 LTDVPILILGNKIDIFD 97 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~ 97 (155)
+..+|++.++||.|...
T Consensus 204 lt~KP~lyvaN~~e~~~ 220 (372)
T COG0012 204 LTAKPMLYVANVSEDDL 220 (372)
T ss_pred hhcCCeEEEEECCcccc
Confidence 34689999999999754
No 448
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=56.37 E-value=26 Score=27.14 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.0
Q ss_pred CCCCCcEEEEEeCCCc
Q psy2161 80 ALTDVPILILGNKIDI 95 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl 95 (155)
.+..+|+++++|+.|.
T Consensus 196 llt~KP~i~v~N~~e~ 211 (364)
T PRK09601 196 LLTAKPVLYVANVDED 211 (364)
T ss_pred ccccCCeEEEEECCcc
Confidence 3456999999999984
No 449
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=54.79 E-value=73 Score=23.12 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=32.5
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
.+-+.++|+|..... .........+|++++|+... ..+...+...+..+.
T Consensus 212 ~yD~ViiD~pp~~~~-~d~~~~~~~~d~vilV~~~~-~t~~~~~~~~~~~l~ 261 (274)
T TIGR03029 212 DYDVVIVDTPSAEHS-SDAQIVATRARGTLIVSRVN-ETRLHELTSLKEHLS 261 (274)
T ss_pred cCCEEEEeCCCcccc-cHHHHHHHhCCeEEEEEECC-CCCHHHHHHHHHHHH
Confidence 377999999864322 22333456799999999764 345566666666654
No 450
>PRK10037 cell division protein; Provisional
Probab=54.51 E-value=57 Score=23.38 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
+++.+.++|||+... ......+..||.+++++..+ .+. .+... .. ..+....++.|+.+
T Consensus 116 ~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~---~~~----~i~~~-~~--~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVD---ANC----HIRLH-QQ--ALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcC---HHH----HHhhh-cc--ccCCCeEEEEecCC
Confidence 458999999998763 34555677899999999663 222 12222 11 12334566778886
No 451
>KOG0781|consensus
Probab=54.37 E-value=42 Score=27.22 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=43.2
Q ss_pred CCEEEEEEEcCCChhhH-Hh---HHhh--cCCCCEEEEEEEC-CCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR-RV---WRDY--FPAVDAIVFIIDA-SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~-~~---~~~~--~~~ad~ii~v~D~-~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+|+-+.++||+|.+.-. ++ ...+ ...-|.|+||-.+ -..++.+.++..-..+. +...+..-=-++++|+|..
T Consensus 465 ~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~-~~~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 465 QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALA-DHSTPRLIDGILLTKFDTV 543 (587)
T ss_pred cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHh-cCCCccccceEEEEeccch
Confidence 56889999999976532 11 1222 3478999999654 23455566555544443 3323333334567999965
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
+
T Consensus 544 ~ 544 (587)
T KOG0781|consen 544 D 544 (587)
T ss_pred h
Confidence 4
No 452
>KOG2743|consensus
Probab=54.07 E-value=60 Score=24.77 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=26.4
Q ss_pred EEEEEEEcCCChhhHHhHHhhcC--------CCCEEEEEEECC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDAS 60 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~--------~ad~ii~v~D~~ 60 (155)
+-..+.+|.|--...+....|+. .-|+|+-|+|.-
T Consensus 146 fD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K 188 (391)
T KOG2743|consen 146 FDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAK 188 (391)
T ss_pred cceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehh
Confidence 67889999997666665555554 468999999984
No 453
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.44 E-value=56 Score=26.86 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=36.1
Q ss_pred CCEEEEEEEcCCChhhHHh-------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRV-------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~-------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.|+||+|....... ... .. ....++|++.+. +.......+..+.. ..+.-+|+||.|..
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~-~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt 497 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLNWLRA-AR-QVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDET 497 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHHHHHH-hh-cCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCc
Confidence 3578999999996432211 111 11 234667777753 33333333433321 24677899999964
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 498 ~ 498 (559)
T PRK12727 498 G 498 (559)
T ss_pred c
Confidence 3
No 454
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.82 E-value=25 Score=25.95 Aligned_cols=66 Identities=15% Similarity=0.013 Sum_probs=37.3
Q ss_pred CEEEEEEEcCCChhh----HHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQA----RRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~----~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
++.+.++||+|.... ...+..+++ ..+-+++|+|++.. .+....++.... . -.+-=++.+|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~-~----~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D----IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC-C----CCCCEEEEEeecCCC
Confidence 578999999996531 112223222 45678999988632 222333333331 1 234556789999644
No 455
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.94 E-value=95 Score=24.50 Aligned_cols=66 Identities=15% Similarity=-0.007 Sum_probs=34.8
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+++.+.++||+|..... .....+.. ..+.+++|++++ .........+... . .-.+--++.||.|-.
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f----~-~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKL----A-EIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhc----C-cCCCCEEEEEcccCC
Confidence 35789999999973221 12222222 346667777653 2233333332222 1 112456678999964
No 456
>PRK13660 hypothetical protein; Provisional
Probab=51.91 E-value=53 Score=22.76 Aligned_cols=49 Identities=16% Similarity=0.246 Sum_probs=31.7
Q ss_pred hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 38 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 38 ~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
.++..-...+..+|++|.++|...+.+- ...+....+.....+.|+.++
T Consensus 118 q~~~rn~fmv~~sd~~i~~YD~e~~Ggt---~y~~~~A~k~~~~~~y~i~~I 166 (182)
T PRK13660 118 QFRQYNQFMLEHTDGALLVYDEENEGSP---KYFYEAAKKKQEKEDYPLDLI 166 (182)
T ss_pred HHHHHHHHHHHccCeEEEEEcCCCCCCh---HHHHHHHHHhhhccCceEEEe
Confidence 3566666777899999999998654322 344444444333457788876
No 457
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=51.18 E-value=59 Score=23.66 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=37.5
Q ss_pred CCEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~D 94 (155)
+++-+.++||+|....... ....+.-||.+++++.. ++.++..+...++.+.......+.++. ++.|+..
T Consensus 116 ~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~-e~~sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 116 WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSG-EMMAMYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred CCCCEEEEECCCCCccCCcccccccccccEEEEEecC-chhHHHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 4588999999774321111 11122368888888854 345565555444433221112345543 6678653
No 458
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=50.88 E-value=63 Score=25.31 Aligned_cols=70 Identities=10% Similarity=-0.031 Sum_probs=39.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHH-------HHHHhCCCCCCCcE-EEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL-------DSLLADDALTDVPI-LILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l-------~~~~~~~~~~~~pi-ilv~nK~Dl~ 96 (155)
.+-+.++|||+...+.. ...+.-||.+|+.+..+. .++..+...+ ..+..........+ -++.|+.|..
T Consensus 251 ~yD~IiIDtpP~l~~~t--~~al~aAd~viiPv~p~~-~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~ 327 (405)
T PRK13869 251 DYDVVVIDCPPQLGFLT--LSGLCAATSMVITVHPQM-LDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQ 327 (405)
T ss_pred cCCEEEEECCCchhHHH--HHHHHHcCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCC
Confidence 48899999999876543 334556999999886542 2233332222 22222111111223 3788999865
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 328 ~ 328 (405)
T PRK13869 328 D 328 (405)
T ss_pred C
Confidence 4
No 459
>PRK11670 antiporter inner membrane protein; Provisional
Probab=50.34 E-value=1.1e+02 Score=23.77 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~ 96 (155)
+.+-+.++|+|..-.........+-.+|++++|...... ++..+...+.... ..+.|++ +|.|+.+..
T Consensus 214 ~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~-s~~da~~~i~~~~----~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 214 PDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI-ALIDAKKGIVMFE----KVEVPVLGIVENMSMHI 282 (369)
T ss_pred ccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchh-HHHHHHHHHHHHh----ccCCCeEEEEEcCCccc
Confidence 347899999986432222222223358988888755432 2333334443332 1356664 778998743
No 460
>KOG4530|consensus
Probab=50.23 E-value=80 Score=21.57 Aligned_cols=48 Identities=21% Similarity=0.322 Sum_probs=30.7
Q ss_pred HHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 40 RRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 40 ~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
...|..-+..+|+++||-.--+ +..+.++.+|+-. ...++|-++|..=
T Consensus 77 t~aw~~ki~~aD~ivFvtPqYN~gypA~LKNAlD~lyh-----eW~gKPalivSyG 127 (199)
T KOG4530|consen 77 TEAWRQKILEADSIVFVTPQYNFGYPAPLKNALDWLYH-----EWAGKPALIVSYG 127 (199)
T ss_pred HHHHHHHHhhcceEEEecccccCCCchHHHHHHHHhhh-----hhcCCceEEEEec
Confidence 4568888899999999954332 3334444444322 2568999888653
No 461
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=49.74 E-value=31 Score=25.06 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=27.7
Q ss_pred CEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELD 73 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~ 73 (155)
++.+.++||+|....... ......-||.+++++..+ +.++..+...++
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~-~~sl~~~~~l~~ 163 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICK 163 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch-HHHHHHHHHHHH
Confidence 478999999875422221 111123589999998654 334444444433
No 462
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=47.57 E-value=81 Score=21.87 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=28.2
Q ss_pred EEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 27 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
.+.++|+|...... ........+|.+++|+.... .+...+...+..+
T Consensus 150 D~IiiD~pp~~~~~-~~~~l~~~aD~viiV~~~~~-~~~~~~~~~~~~l 196 (207)
T TIGR03018 150 RIIIIDTPPLLVFS-EARALARLVGQIVLVVEEGR-TTQEAVKEALSAL 196 (207)
T ss_pred CEEEEECCCCcchh-HHHHHHHhCCEEEEEEECCC-CCHHHHHHHHHHh
Confidence 58899998655322 22233456899999987753 3444445555444
No 463
>PRK07116 flavodoxin; Provisional
Probab=47.31 E-value=82 Score=20.89 Aligned_cols=61 Identities=10% Similarity=-0.045 Sum_probs=36.9
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
-+...|.+++++..--......++.++... .+.+++++++++-..-.......++.+.++.
T Consensus 73 ~l~~~D~Iiig~Pv~~~~~p~~v~~fl~~~----~l~~k~v~~f~T~g~~~~g~~~~~~~~~~~~ 133 (160)
T PRK07116 73 NIAEYDVIFLGFPIWWYVAPRIINTFLESY----DFSGKTVIPFATSGGSGIGNAEKELKKSYPD 133 (160)
T ss_pred hHHhCCEEEEECChhccccHHHHHHHHHhc----CCCCCEEEEEEeCCCCCcCcHHHHHHHHCCc
Confidence 356789999998664333334445555433 4567899999986543223445566665543
No 464
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=46.12 E-value=52 Score=25.61 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH---HHHHHHHhCCC--CCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK---YELDSLLADDA--LTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~---~~l~~~~~~~~--~~~~piilv~nK~Dl~~ 97 (155)
.+-+.++|||....... ...+.-||.+|+.+..+ ..++..+. ..+..+..... ..+..+-++.|+.|...
T Consensus 234 ~YD~IiIDtpP~l~~~t--~nal~AaD~viiP~~~~-~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~ 308 (388)
T PRK13705 234 DYDVIVIDSAPNLGIGT--INVVCAADVLIVPTPAE-LFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSN 308 (388)
T ss_pred cCCEEEEECCCchhHHH--HHHHHHcCEEEEecCCc-HHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCC
Confidence 47899999998765432 33344689888887553 22333322 33333322100 01233446889988653
No 465
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=46.11 E-value=1.8e+02 Score=24.48 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=41.6
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.+++|.++|..- .+ +-...+-||.+++.+|.+-.-.++. .. +.+++.+.+ -..++-|+++.|+..
T Consensus 113 RRiTflEcp~Dl--~~-miDvaKIaDLVlLlIdgnfGfEMET-mE-FLnil~~HG--mPrvlgV~ThlDlfk 177 (1077)
T COG5192 113 RRITFLECPSDL--HQ-MIDVAKIADLVLLLIDGNFGFEMET-ME-FLNILISHG--MPRVLGVVTHLDLFK 177 (1077)
T ss_pred eEEEEEeChHHH--HH-HHhHHHhhheeEEEeccccCceehH-HH-HHHHHhhcC--CCceEEEEeeccccc
Confidence 899999999432 33 3344567999999999975322221 22 334433322 234788999999976
No 466
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=44.99 E-value=76 Score=25.45 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=22.9
Q ss_pred EEEEEEECCC----CCchHHH-HHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 52 AIVFIIDASD----RSRFPES-KYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 52 ~ii~v~D~~~----~~~~~~~-~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
|+++--|.|= .+.+..+ .+.+.++.. -++|+++++|-.+
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~ 191 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTK 191 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCC
Confidence 6666667652 2333333 234444422 2799999999886
No 467
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=44.60 E-value=47 Score=25.88 Aligned_cols=71 Identities=17% Similarity=0.015 Sum_probs=38.8
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH---HHHHHHHHHhCC--CCCCCcEEEEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE---SKYELDSLLADD--ALTDVPILILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~---~~~~l~~~~~~~--~~~~~piilv~nK~Dl~~ 97 (155)
+++-+.++|||+...+.. ...+.-||.+|+.+..+- .++.. ....+.++.... ...+..+-++.|+.|...
T Consensus 233 ~~YD~IlID~pPslg~lt--~nAL~AAd~vliPv~~~~-~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~ 308 (387)
T PHA02519 233 DNYDIIVIDSAPNLGTGT--INVVCAADVIVVATPAEL-FDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTV 308 (387)
T ss_pred ccCCEEEEECCCCccHHH--HHHHHHhCEEEEecCCcH-HHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCC
Confidence 348899999999876533 333455788888875432 22222 222232322110 001334457889998653
No 468
>PRK06756 flavodoxin; Provisional
Probab=43.91 E-value=82 Score=20.45 Aligned_cols=44 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred cCCCCEEEEEEECCCCCchH-HHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 47 FPAVDAIVFIIDASDRSRFP-ESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~-~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
+.++|++++.........+. ....++..+. ...+.++|+.++++
T Consensus 47 ~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~-~~~l~~k~~~~fgt 91 (148)
T PRK06756 47 LEQYDGIILGAYTWGDGDLPDDFLDFYDAMD-SIDLTGKKAAVFGS 91 (148)
T ss_pred HhcCCeEEEEeCCCCCCCCcHHHHHHHHHHh-cCCCCCCEEEEEeC
Confidence 56789999998543323333 3566666653 23457899999988
No 469
>PRK01355 azoreductase; Reviewed
Probab=43.56 E-value=87 Score=21.68 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=25.0
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+...+..||++|++...-.-.--..++.|++.+.
T Consensus 71 ~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 71 YINQLKSVDKVVISCPMTNFNVPATLKNYLDHIA 104 (199)
T ss_pred HHHHHHhCCEEEEEcCccccCChHHHHHHHHHHH
Confidence 4456779999999998765444456677888775
No 470
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=41.86 E-value=65 Score=22.08 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=34.6
Q ss_pred HHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 40 RRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 40 ~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
-..|...++.||+++++..--+ +--+..+.+|+..- .+.++|+++++..--..
T Consensus 58 v~~~~~~i~~aD~li~~tPeYn~s~pg~lKnaiD~l~~~----~~~~Kpv~~~~~s~g~~ 113 (184)
T COG0431 58 VQALREAIAAADGLIIATPEYNGSYPGALKNAIDWLSRE----ALGGKPVLLLGTSGGGA 113 (184)
T ss_pred HHHHHHHHHhCCEEEEECCccCCCCCHHHHHHHHhCCHh----HhCCCcEEEEecCCCch
Confidence 4567788889999999965433 33334444443322 45689999999877543
No 471
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=41.30 E-value=79 Score=20.51 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=28.9
Q ss_pred CCCEEEEEEECCCCCchHHHHHHHHHHHhC-CCCCCCcEEEE
Q psy2161 49 AVDAIVFIIDASDRSRFPESKYELDSLLAD-DALTDVPILIL 89 (155)
Q Consensus 49 ~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~-~~~~~~piilv 89 (155)
.-|+.||.+-++...+-..+..|+..+.+. ..+.++||++=
T Consensus 83 q~dGti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~Fr 124 (126)
T PF14784_consen 83 QEDGTIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLFR 124 (126)
T ss_pred eccceEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEEE
Confidence 567778777777666667778898887653 35567888763
No 472
>COG2403 Predicted GTPase [General function prediction only]
Probab=40.63 E-value=83 Score=24.72 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=51.8
Q ss_pred CCCcccCCCCCceeEEEECC--------EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 6 RTAQHMPTLHPTSEELSMGD--------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 6 ~~~~~~pT~~~~~~~~~~~~--------~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
+.+.+.||.+.-..-+++.. -.+.+||-+|.. + + +-..|.-|.++|+..| ..++.+
T Consensus 197 eye~~I~tg~~vlAGvdy~~vlke~~~~aD~IlwdGgnnd-f----P--fvkpd~~Ivvvda~rp---------g~ei~~ 260 (449)
T COG2403 197 EYESYIPTGGGVLAGVDYGTVLKEGEKEADFILWDGGNND-F----P--FVKPDLHIVVVDALRP---------GEEIGS 260 (449)
T ss_pred HHhhccccccceEeeeeHHHHHHHHhhhccEEEEeCCCCC-C----C--cccCCeeEEEecCCCC---------chhhcc
Confidence 45678888887777776632 469999977754 1 1 2247888999998765 222322
Q ss_pred CCCCC--CCcEEEEEeCCCcCCcCCHHHHHhhh
Q psy2161 78 DDALT--DVPILILGNKIDIFDAASEDEVRHFF 108 (155)
Q Consensus 78 ~~~~~--~~piilv~nK~Dl~~~~~~~~i~~~~ 108 (155)
....- ..-=+++.||+|-.......++....
T Consensus 261 ~pGe~~irlAD~VIItkveea~~~kvrkI~~~I 293 (449)
T COG2403 261 FPGELRIRLADLVIITKVEEAMAEKVRKIVRNI 293 (449)
T ss_pred CCCceeeeeccEEEEecccccchHHHHHHHHHH
Confidence 22211 12346778999965433333444433
No 473
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=40.37 E-value=93 Score=22.22 Aligned_cols=50 Identities=4% Similarity=-0.068 Sum_probs=29.4
Q ss_pred hHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHh-CCCCCCCcEEEEEe
Q psy2161 42 VWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLA-DDALTDVPILILGN 91 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~-~~~~~~~piilv~n 91 (155)
.+...++.||++|++-.--+ +-.+.++.+|+..-.. ...+.++|+.+++.
T Consensus 83 ~l~~~v~~ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~Kpvaivga 136 (219)
T TIGR02690 83 ELRQLSEWSEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQV 136 (219)
T ss_pred HHHHHHHhCCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEe
Confidence 46677889999999954332 3333444444432210 01356899999875
No 474
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=40.03 E-value=53 Score=23.84 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=35.0
Q ss_pred CEEEEEEEcCCChhhHHhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKI 93 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~ 93 (155)
.+-+.++||+|......+... + .-||.+++++..+ +.++..+...++.+.......+.+++ +|.|+.
T Consensus 118 ~yD~iliD~~~~~~~~al~~~-~~~~aad~viIp~~p~-~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 118 DLDFVFFDVLGDVVCGGFAMP-IRDGKAQEVYIVASGE-MMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCEEEEecCCceeecccccc-chhccCceEEEecccc-HHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 478899999774321111100 0 2588888888654 34455444444333211112345544 778865
No 475
>KOG0052|consensus
Probab=39.79 E-value=38 Score=26.42 Aligned_cols=71 Identities=20% Similarity=0.093 Sum_probs=43.9
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC-----CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-----RSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~-----~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.+.+++.|.+|+..+...+..-...||..++++.+.. ..+.....+....+ ...+.-.+.++-+||+|...
T Consensus 81 k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehall--a~tlgv~qliv~v~k~D~~~ 156 (391)
T KOG0052|consen 81 KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL--AFTLGVKQLIVGVNKMDSTE 156 (391)
T ss_pred eEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhh--hccccceeeeEEeecccccC
Confidence 3889999999999887766665778887777776621 11111111111111 12223468888899999654
No 476
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=38.28 E-value=52 Score=22.58 Aligned_cols=49 Identities=18% Similarity=0.053 Sum_probs=34.8
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--------------CCCCCCcEEEEEeCC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--------------DALTDVPILILGNKI 93 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--------------~~~~~~piilv~nK~ 93 (155)
..+..||.+|+++..-.-.--..++.|++.+... ..+.+++++++.+--
T Consensus 74 ~~l~~AD~iV~~~Pl~~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g 136 (199)
T PF02525_consen 74 EELLWADHIVFAFPLYWFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSG 136 (199)
T ss_dssp HHHHHSSEEEEEEEEBTTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEES
T ss_pred HHHHHcCcceEeccceecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCC
Confidence 5677999999999887655556678899988542 133567777777643
No 477
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=38.15 E-value=1.4e+02 Score=22.14 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 48 PAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 48 ~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
..+++++++++.+..++.+... +.+++..-.....+--++|++.|.|
T Consensus 62 t~~QiaVv~vpSt~g~~IE~ya~rlfd~W~lG~k~~~dGvLLlVa~~d 109 (271)
T COG1512 62 TGAQIAVVTVPSTGGETIEQYATRLFDKWKLGDKAQDDGVLLLVAMND 109 (271)
T ss_pred cCCeEEEEEecCCCCCCHHHHHHHHHHhcCCCccccCCCEEEEEEcCC
Confidence 3788999999999888887664 4444422111123446999999999
No 478
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=38.08 E-value=1.2e+02 Score=23.51 Aligned_cols=34 Identities=9% Similarity=0.005 Sum_probs=24.7
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
.+-+.++|||+..... ....+.-||.+|+.+..+
T Consensus 234 ~yD~IiiD~pp~~~~~--~~~al~aad~viipv~p~ 267 (387)
T TIGR03453 234 DYDVVVIDCPPQLGFL--TLSALCAATGVLITVHPQ 267 (387)
T ss_pred cCCEEEEeCCccHhHH--HHHHHHHcCeeEEcCCCc
Confidence 4789999999976543 333455689999888654
No 479
>PRK06242 flavodoxin; Provisional
Probab=37.55 E-value=62 Score=20.95 Aligned_cols=60 Identities=8% Similarity=-0.055 Sum_probs=34.7
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 109 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 109 (155)
-+.++|.+++....-...-...++.+++.+. ...+++++++++-- .........+...+.
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~---~~~~k~~~~f~t~g-~~~~~~~~~l~~~l~ 99 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLP---PVSGKKAFIFSTSG-LPFLKYHKALKKKLK 99 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhh---hhcCCeEEEEECCC-CCcchHHHHHHHHHH
Confidence 3567899999876543333455566666552 23578999998843 322112344455444
No 480
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=37.28 E-value=1.1e+02 Score=19.25 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=30.0
Q ss_pred eCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 91 NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 91 nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
|.....+..+..++....... .....+++.-...+|.+-..++.||.
T Consensus 62 nqFg~QEp~~~~ei~~~~~~~--------------~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 62 NQFGNQEPGSNEEIKEFCKEK--------------FGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp STTTTTTSSCHHHHHHHHCHC--------------HT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HHhccccCCCHHHHHHHHHhc--------------cCCcccceEEEEecCCCCcHHHHHhC
Confidence 444444455677777776651 12345778888889999999999873
No 481
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.23 E-value=1.2e+02 Score=24.16 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=35.1
Q ss_pred CCEEEEEEEcCCChh----hHHhHHhhcC-----CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQ----ARRVWRDYFP-----AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~----~~~~~~~~~~-----~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.++.+.++||+|... ....+..+++ ...-.++|+|++... .......... +. --+-=++.+|.|
T Consensus 298 ~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLD 370 (432)
T PRK12724 298 DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLD 370 (432)
T ss_pred CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEccc
Confidence 467889999999642 1122333332 234678899986532 2222222222 11 124456679999
Q ss_pred cC
Q psy2161 95 IF 96 (155)
Q Consensus 95 l~ 96 (155)
-.
T Consensus 371 Et 372 (432)
T PRK12724 371 EA 372 (432)
T ss_pred CC
Confidence 54
No 482
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=35.66 E-value=82 Score=23.36 Aligned_cols=69 Identities=12% Similarity=0.086 Sum_probs=35.6
Q ss_pred CCEEEEEEEcCCChhhHHhHHh-hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRD-YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKI 93 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~-~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~ 93 (155)
+++-+.++||+|.......... ....||.+|+++..+ +.++..+...++.+.......+..+ -++.|+.
T Consensus 118 ~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe-~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~ 188 (295)
T PRK13234 118 DDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGE-MMALYAANNIAKGILKYANSGGVRLGGLICNER 188 (295)
T ss_pred ccCCEEEEEcCCCceECCCccccccccCceEEEecCcc-HHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 3578899999763211121111 013789988888653 3455555444444432211123333 4677854
No 483
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.26 E-value=65 Score=25.60 Aligned_cols=66 Identities=15% Similarity=0.013 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCChhh----HHhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQA----RRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~----~~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
++.+.++||+|.... ...+..+++ ..+.+++|+|++.. ............ . -..-=++++|.|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~-~----~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK-D----IHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhc-C----CCCCEEEEEcccCCC
Confidence 468999999996431 111233332 35678899987532 222233333331 1 124456779999644
No 484
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=35.20 E-value=64 Score=23.54 Aligned_cols=48 Identities=8% Similarity=-0.090 Sum_probs=28.0
Q ss_pred CCEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHH
Q psy2161 24 GDIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYEL 72 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l 72 (155)
.++.+.++||+|....... ....+.-||.+++++..+ +.++..+...+
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~-~~si~~~~~ll 163 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD-PMAIYAANNIC 163 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccch-HHHHHHHHHHH
Confidence 3588999999874322121 222334589999998764 34444444333
No 485
>PRK05569 flavodoxin; Provisional
Probab=34.52 E-value=1e+02 Score=19.66 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=28.7
Q ss_pred hcCCCCEEEEEEECCCCCch--HHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 46 YFPAVDAIVFIIDASDRSRF--PESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~--~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
-+.++|++++....-....+ .....+++.+. .....++++.++++-
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~-~~~~~~K~v~~f~t~ 92 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFK-LTPNENKKCILFGSY 92 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHHhh-ccCcCCCEEEEEeCC
Confidence 35579999999765332222 34556666653 223468899999984
No 486
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.47 E-value=2.3e+02 Score=22.41 Aligned_cols=67 Identities=12% Similarity=0.102 Sum_probs=35.7
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhcC---CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~~---~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.++||+|..... .....++. ...-+.+|++++.. ........... +. -+ +-=++.+|.|-.
T Consensus 298 ~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet 370 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDET 370 (424)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEeccccc
Confidence 35789999999964321 22333333 23466788887532 22222222322 11 11 235778999964
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 371 ~ 371 (424)
T PRK05703 371 S 371 (424)
T ss_pred c
Confidence 3
No 487
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=34.10 E-value=2.3e+02 Score=22.23 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=36.6
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhcCC--CC-EEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYFPA--VD-AIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~~~--ad-~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.+.||+|..... .....++.. .+ -+++|+|++.. ...+...+.... . -.+-=++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~---~--~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS---P--FSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc---C--CCCCEEEEEeccCC
Confidence 46889999999964321 122233332 23 58899998753 233333333331 1 12455677999953
No 488
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=33.39 E-value=1e+02 Score=18.97 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=27.3
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
...+++||++|..+|...+. . .....+..... .++|++++.+....
T Consensus 56 ~~~i~~~D~via~l~~~~~d-~-Gt~~ElG~A~a----lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPD-S-GTAFELGYAYA----LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHSSEEEEEECSSS---H-HHHHHHHHHHH----TTSEEEEEECCCCT
T ss_pred HHHHHHCCEEEEECCCCCCC-C-cHHHHHHHHHH----CCCEEEEEEcCCcc
Confidence 34577899999999874321 1 11112222211 26899999987764
No 489
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=32.60 E-value=2.4e+02 Score=22.34 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=35.5
Q ss_pred CCEEEEEEEcCCChhh----HHhHHhhcCCC--CEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQA----RRVWRDYFPAV--DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~----~~~~~~~~~~a--d~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.++||.|...+ ..-...++..+ .-+-+|++++. ..+..+..+... ..-+ .-=++++|.|-.
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f----~~~~-i~~~I~TKlDET 351 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQF----SLFP-IDGLIFTKLDET 351 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHh----ccCC-cceeEEEccccc
Confidence 3468999999996443 33344444433 34455666653 334444444444 2112 233557999943
No 490
>PRK13236 nitrogenase reductase; Reviewed
Probab=32.48 E-value=1.2e+02 Score=22.52 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=35.7
Q ss_pred CCEEEEEEEcCCChhhHHhH-HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRVW-RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~-~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl 95 (155)
+++-+.++|++|.-...... ...+..||.+++++.. ++.++..+...+..+.+.....+.++ -+|.|+.+.
T Consensus 120 ~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttp-e~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~ 192 (296)
T PRK13236 120 QDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSG-EMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNV 192 (296)
T ss_pred ccCCEEEEeccccceeccccccchhccCCEEEEecCc-chHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCC
Confidence 35778899997642111111 1114578888888754 34455444433332222211234444 466788654
No 491
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=32.00 E-value=1.6e+02 Score=20.85 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=28.2
Q ss_pred HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 40 ~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
...+...+.++|++++.=|.++....+.....+..+. . .....+++.||+
T Consensus 32 ~~~~~~~~~~~D~viiaGDl~~~~~~~~~~~~l~~l~-~--l~~~v~~V~GNH 81 (232)
T cd07393 32 KENWDNVVAPEDIVLIPGDISWAMKLEEAKLDLAWID-A--LPGTKVLLKGNH 81 (232)
T ss_pred HHHHHhcCCCCCEEEEcCCCccCCChHHHHHHHHHHH-h--CCCCeEEEeCCc
Confidence 3445555668999999999886544443333333332 1 122245666774
No 492
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=30.54 E-value=1.6e+02 Score=21.99 Aligned_cols=69 Identities=13% Similarity=-0.020 Sum_probs=35.7
Q ss_pred CEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHH---HHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPE---SKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~---~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
++.+.++|++|...-... .......||.++.+...+ ..++.. +...+..+.+ ....-.+.-+|.|+.+.
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e-~~sl~~a~~l~k~v~~~~~-~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSND-RQSLYVANNICNAVEYFRK-LGGRVGLLGLVVNRDDG 194 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecch-HHHHHHHHHHHHHHHHHHH-cCCCCcceEEEEeCCCC
Confidence 589999998774310000 111123588888887543 223332 2333333322 11112356788999975
No 493
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=30.34 E-value=2.2e+02 Score=20.78 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred CCEEEEEEEcCCChhhHHhHHh-hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRD-YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~-~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.|+.+.+..+.+.......... .-+++||+|++ .... ..+. +....+. +.|++++....+..
T Consensus 30 ~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~--s~~~-~~~~----l~~~~~~----~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 30 HGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILA--SSEN-DDEE----LRRLIKS----GIPVVLIDRYIDNP 92 (279)
T ss_dssp TTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEE--SSSC-TCHH----HHHHHHT----TSEEEEESS-SCTT
T ss_pred cCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEe--cccC-ChHH----HHHHHHc----CCCEEEEEeccCCc
Confidence 5788999998887654432222 22489999988 2222 2222 3333221 68999998886654
No 494
>COG4474 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.10 E-value=1.7e+02 Score=20.14 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=22.2
Q ss_pred hHHhHHhhcCCCCEEEEEEECCCCCchHHH
Q psy2161 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPES 68 (155)
Q Consensus 39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~ 68 (155)
++..-...+.++|+++++||..++.+....
T Consensus 119 f~q~nqf~le~sdg~ll~YD~ekegs~ky~ 148 (180)
T COG4474 119 FRQYNQFLLEKSDGALLFYDEEKEGSPKYF 148 (180)
T ss_pred HHHhhhhhhccCceeEEEEcCcccCChHHH
Confidence 455556667799999999999877666443
No 495
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=28.77 E-value=2.7e+02 Score=21.29 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=38.9
Q ss_pred EEEEEEEcCCCh---hhHHhHHhh-------------cCCCCEEEEEEECCCCCc----hHHHHHHHHHHHhCCCCCCCc
Q psy2161 26 IVFTTHDLGGHV---QARRVWRDY-------------FPAVDAIVFIIDASDRSR----FPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 26 ~~~~~~Dt~G~~---~~~~~~~~~-------------~~~ad~ii~v~D~~~~~~----~~~~~~~l~~~~~~~~~~~~p 85 (155)
+-+.+||++... ..+...... --+||.|-+.+..++++. -++....++.+... .+.|
T Consensus 50 ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~ea---vd~P 126 (319)
T PRK04452 50 IAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQA---VDVP 126 (319)
T ss_pred EEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHh---CCCC
Confidence 779999998643 222222211 338999999987777753 23334444555422 4789
Q ss_pred EEEEEeC
Q psy2161 86 ILILGNK 92 (155)
Q Consensus 86 iilv~nK 92 (155)
+++.++.
T Consensus 127 L~Id~s~ 133 (319)
T PRK04452 127 LIIGGSG 133 (319)
T ss_pred EEEecCC
Confidence 9876663
No 496
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.68 E-value=1.6e+02 Score=25.43 Aligned_cols=69 Identities=12% Similarity=-0.024 Sum_probs=34.2
Q ss_pred CCEEEEEEEcCCChh----hHHhHHhh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQ----ARRVWRDY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~----~~~~~~~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.++||+|... ........ ....+-+++|+|++.. .+.+............ -.+-=+|++|.|-.
T Consensus 262 ~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~--~~i~glIlTKLDEt 336 (767)
T PRK14723 262 GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG--EDVDGCIITKLDEA 336 (767)
T ss_pred cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc--CCCCEEEEeccCCC
Confidence 346899999999422 11111111 2235578899988642 2222222222211000 01345667999953
No 497
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=28.53 E-value=1e+02 Score=19.28 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=26.6
Q ss_pred CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 48 PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 48 ~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
..+++..+|+|.. ..........+..+.... .++|++++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~--~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRERN--FGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS--TT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHhC--CCCCEEEEecCC
Confidence 3678888888765 223333445556654322 479999999866
No 498
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=28.04 E-value=26 Score=21.89 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=22.1
Q ss_pred EEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 28 ~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
+++||.-|+..-+......-..+.+++++++.+
T Consensus 38 lTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~ 70 (104)
T PF12098_consen 38 LTVLDAYGQWRDRATGRLIRERSKVVIIVHPDT 70 (104)
T ss_pred ceEEeccceEecCCCCcEeecccEEEEEEeCCC
Confidence 788999998866444444444677777777543
No 499
>KOG3859|consensus
Probab=27.93 E-value=1.1e+02 Score=23.11 Aligned_cols=30 Identities=13% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCCcccCCCCCceeEEEE--CC--EEEEEEEcCC
Q psy2161 6 RTAQHMPTLHPTSEELSM--GD--IVFTTHDLGG 35 (155)
Q Consensus 6 ~~~~~~pT~~~~~~~~~~--~~--~~~~~~Dt~G 35 (155)
......|+++....++++ .+ .++++.||.|
T Consensus 71 p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 71 PSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred CCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 344556776665444444 44 7899999998
No 500
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=27.80 E-value=1.3e+02 Score=21.77 Aligned_cols=69 Identities=12% Similarity=0.008 Sum_probs=37.6
Q ss_pred CCEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~D 94 (155)
+++-+.++||+|....... ....+..||.+++++... +.++..+...++.+.... ..+.++. +|.|+.+
T Consensus 115 ~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~-~~sl~~~~~~~k~l~~~~-~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 115 DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGE-LMAIYAANNICKGLAKFA-KGGARLGGIICNSRN 185 (273)
T ss_pred ccCCEEEEecCCCeeECCEeccccccccceEEEecCch-HHHHHHHHHHHHHHHHHh-CCCCceeEEEEeCCC
Confidence 3478999999876421111 111134689888888643 344444444444443211 1345554 7778765
Done!