Query psy2161
Match_columns 155
No_of_seqs 118 out of 1530
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 17:53:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f6b_A SAR1; gtpases, N-termin 100.0 8.2E-29 2.8E-33 171.4 14.9 154 2-155 45-198 (198)
2 1fzq_A ADP-ribosylation factor 100.0 5E-28 1.7E-32 165.2 15.1 141 2-154 36-176 (181)
3 1r8s_A ADP-ribosylation factor 100.0 7.6E-28 2.6E-32 161.1 14.6 139 4-154 22-160 (164)
4 4dkx_A RAS-related protein RAB 100.0 9.9E-29 3.4E-33 173.4 9.4 134 3-154 34-174 (216)
5 1m2o_B GTP-binding protein SAR 100.0 1.7E-27 6E-32 163.7 14.6 148 2-154 43-190 (190)
6 1zj6_A ADP-ribosylation factor 100.0 1.9E-27 6.4E-32 162.8 14.1 141 2-154 36-176 (187)
7 1upt_A ARL1, ADP-ribosylation 100.0 4E-27 1.4E-31 158.4 15.2 140 3-154 28-167 (171)
8 2h17_A ADP-ribosylation factor 100.0 2.5E-27 8.7E-32 161.4 14.4 141 2-154 41-181 (181)
9 1ksh_A ARF-like protein 2; sma 100.0 5.8E-27 2E-31 160.0 15.8 141 2-154 38-178 (186)
10 2x77_A ADP-ribosylation factor 99.9 5.4E-27 1.8E-31 160.6 14.7 142 1-154 41-182 (189)
11 2b6h_A ADP-ribosylation factor 99.9 2.6E-27 9.1E-32 163.0 12.9 141 2-154 49-189 (192)
12 1moz_A ARL1, ADP-ribosylation 99.9 1E-26 3.4E-31 158.2 13.9 141 2-154 38-178 (183)
13 2h57_A ADP-ribosylation factor 99.9 1.9E-26 6.5E-31 158.1 14.7 141 2-154 41-185 (190)
14 1zd9_A ADP-ribosylation factor 99.9 3.4E-26 1.2E-30 156.8 15.2 139 4-154 44-183 (188)
15 4bas_A ADP-ribosylation factor 99.9 1.4E-26 4.9E-31 159.4 12.6 141 2-154 37-187 (199)
16 3lvq_E ARF-GAP with SH3 domain 99.9 2.2E-25 7.6E-30 173.2 13.5 141 2-154 342-482 (497)
17 3o47_A ADP-ribosylation factor 99.9 3.1E-25 1.1E-29 164.5 12.9 142 1-154 184-325 (329)
18 3q72_A GTP-binding protein RAD 99.9 1.8E-24 6.2E-29 144.8 12.3 135 3-154 23-162 (166)
19 1cip_A Protein (guanine nucleo 99.9 3.2E-25 1.1E-29 165.4 9.5 136 9-154 176-342 (353)
20 3ohm_A Guanine nucleotide-bind 99.9 5.8E-25 2E-29 162.2 7.6 145 10-154 151-316 (327)
21 2nzj_A GTP-binding protein REM 99.9 7.7E-24 2.6E-28 142.8 12.0 135 3-154 25-167 (175)
22 2hup_A RAS-related protein RAB 99.9 1E-23 3.5E-28 146.0 12.6 129 8-154 56-191 (201)
23 3t1o_A Gliding protein MGLA; G 99.9 1.8E-24 6.1E-29 148.4 8.6 126 10-154 53-190 (198)
24 2fu5_C RAS-related protein RAB 99.9 2.6E-24 8.9E-29 146.4 8.7 135 2-154 28-169 (183)
25 3ihw_A Centg3; RAS, centaurin, 99.9 8.1E-24 2.8E-28 144.7 10.4 126 8-154 47-178 (184)
26 1x3s_A RAS-related protein RAB 99.9 3.3E-23 1.1E-27 142.0 13.4 130 8-154 42-176 (195)
27 2yc2_C IFT27, small RAB-relate 99.9 1.2E-23 4.2E-28 145.5 11.3 130 8-154 49-190 (208)
28 3t5g_A GTP-binding protein RHE 99.9 1E-23 3.6E-28 143.1 10.4 131 7-154 32-167 (181)
29 1u8z_A RAS-related protein RAL 99.9 2.4E-23 8.2E-28 139.1 11.8 130 8-154 31-165 (168)
30 2efe_B Small GTP-binding prote 99.9 1.1E-22 3.6E-27 137.9 15.0 129 8-154 39-173 (181)
31 1zcb_A G alpha I/13; GTP-bindi 99.9 4.4E-24 1.5E-28 159.8 8.9 138 10-154 185-351 (362)
32 1r2q_A RAS-related protein RAB 99.9 8.4E-23 2.9E-27 136.8 14.1 130 8-155 33-168 (170)
33 2g6b_A RAS-related protein RAB 99.9 1.5E-23 5.1E-28 142.0 10.4 129 8-154 38-172 (180)
34 2ew1_A RAS-related protein RAB 99.9 3.1E-23 1E-27 143.8 11.9 129 8-154 53-187 (201)
35 3kkq_A RAS-related protein M-R 99.9 2.7E-23 9.2E-28 141.3 11.4 131 7-154 44-180 (183)
36 1c1y_A RAS-related protein RAP 99.9 1.8E-23 6.1E-28 139.8 10.3 131 8-154 30-165 (167)
37 1z06_A RAS-related protein RAB 99.9 7.6E-23 2.6E-27 140.0 13.7 130 8-154 47-186 (189)
38 2fg5_A RAB-22B, RAS-related pr 99.9 2.9E-23 1E-27 142.6 11.6 129 8-154 50-184 (192)
39 2bov_A RAla, RAS-related prote 99.9 5.7E-23 2E-27 142.0 13.0 131 7-154 40-175 (206)
40 2iwr_A Centaurin gamma 1; ANK 99.9 2.4E-23 8E-28 141.0 10.7 132 2-154 27-167 (178)
41 1ek0_A Protein (GTP-binding pr 99.9 1.1E-22 3.7E-27 136.3 13.8 129 8-154 30-167 (170)
42 1zbd_A Rabphilin-3A; G protein 99.9 4.8E-23 1.6E-27 142.4 12.4 133 4-154 30-169 (203)
43 4fid_A G protein alpha subunit 99.9 1.5E-24 5E-29 160.6 4.9 144 10-154 145-326 (340)
44 3cbq_A GTP-binding protein REM 99.9 8.5E-23 2.9E-27 140.9 12.9 129 9-154 51-186 (195)
45 3bc1_A RAS-related protein RAB 99.9 9.9E-23 3.4E-27 139.2 13.1 130 8-154 38-183 (195)
46 2fn4_A P23, RAS-related protei 99.9 3.1E-23 1.1E-27 140.3 10.4 131 7-154 35-170 (181)
47 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.3E-22 4.5E-27 137.0 13.5 131 8-154 34-172 (177)
48 2a9k_A RAS-related protein RAL 99.9 5.4E-23 1.8E-27 139.8 11.7 130 8-154 45-179 (187)
49 3q85_A GTP-binding protein REM 99.9 4E-23 1.4E-27 138.6 10.8 126 12-154 35-165 (169)
50 1z0f_A RAB14, member RAS oncog 99.9 8.7E-23 3E-27 137.9 12.5 130 7-154 41-176 (179)
51 2il1_A RAB12; G-protein, GDP, 99.9 2.8E-23 9.7E-28 142.7 10.2 135 3-154 47-188 (192)
52 2bme_A RAB4A, RAS-related prot 99.9 1.4E-22 4.8E-27 138.0 13.5 129 8-154 37-171 (186)
53 2hxs_A RAB-26, RAS-related pro 99.9 2.3E-23 8E-28 140.8 9.3 130 8-154 33-171 (178)
54 3tw8_B RAS-related protein RAB 99.9 3.1E-23 1.1E-27 140.3 9.9 133 3-154 30-169 (181)
55 3tkl_A RAS-related protein RAB 99.9 1.1E-22 3.6E-27 139.6 12.6 130 7-154 42-177 (196)
56 4dsu_A GTPase KRAS, isoform 2B 99.9 1.1E-22 3.8E-27 138.6 12.2 130 8-154 31-164 (189)
57 3q3j_B RHO-related GTP-binding 99.9 4.6E-23 1.6E-27 144.1 10.4 129 7-154 53-201 (214)
58 1azs_C GS-alpha; complex (lyas 99.9 3.2E-23 1.1E-27 156.5 10.0 145 10-154 201-383 (402)
59 2a5j_A RAS-related protein RAB 99.9 7.3E-23 2.5E-27 140.4 11.0 129 8-154 48-182 (191)
60 1z08_A RAS-related protein RAB 99.9 4.8E-23 1.6E-27 138.2 9.7 129 8-154 33-167 (170)
61 1z0j_A RAB-22, RAS-related pro 99.9 2.2E-22 7.6E-27 134.8 12.9 130 7-154 32-167 (170)
62 1kao_A RAP2A; GTP-binding prot 99.9 5.8E-23 2E-27 137.1 9.9 130 8-154 30-164 (167)
63 2atx_A Small GTP binding prote 99.9 9.8E-23 3.4E-27 139.9 11.3 128 8-154 45-191 (194)
64 2f7s_A C25KG, RAS-related prot 99.9 3.7E-23 1.3E-27 144.4 9.1 130 8-154 52-197 (217)
65 2bcg_Y Protein YP2, GTP-bindin 99.9 2E-22 6.8E-27 139.6 12.5 129 8-154 35-169 (206)
66 2g3y_A GTP-binding protein GEM 99.9 3.9E-22 1.3E-26 139.4 14.0 130 8-154 65-201 (211)
67 3oes_A GTPase rhebl1; small GT 99.9 4.4E-23 1.5E-27 142.6 8.8 131 7-154 50-185 (201)
68 2o52_A RAS-related protein RAB 99.9 8E-23 2.7E-27 141.3 10.1 129 8-154 52-186 (200)
69 3dz8_A RAS-related protein RAB 99.9 5.4E-23 1.8E-27 141.0 9.0 129 8-154 50-184 (191)
70 2gf9_A RAS-related protein RAB 99.9 2.4E-22 8.1E-27 137.5 12.1 129 8-154 49-183 (189)
71 2oil_A CATX-8, RAS-related pro 99.9 4.1E-22 1.4E-26 136.7 13.2 129 8-154 52-186 (193)
72 1z2a_A RAS-related protein RAB 99.9 1.3E-22 4.5E-27 135.7 10.4 128 8-154 32-165 (168)
73 3clv_A RAB5 protein, putative; 99.9 3.7E-22 1.3E-26 137.3 12.9 109 26-154 93-202 (208)
74 3cpj_B GTP-binding protein YPT 99.9 1.3E-22 4.4E-27 142.5 10.7 129 8-154 40-174 (223)
75 3reg_A RHO-like small GTPase; 99.9 1.4E-22 4.9E-27 139.1 10.7 128 8-154 50-186 (194)
76 2y8e_A RAB-protein 6, GH09086P 99.9 3E-22 1E-26 135.2 11.8 129 8-154 41-175 (179)
77 2fh5_B SR-beta, signal recogni 99.9 4.5E-22 1.5E-26 138.6 12.9 152 3-154 28-214 (214)
78 2atv_A RERG, RAS-like estrogen 99.9 2E-22 7E-27 138.7 10.8 129 8-154 55-189 (196)
79 2p5s_A RAS and EF-hand domain 99.9 1.2E-22 4.3E-27 140.1 9.6 129 8-154 55-195 (199)
80 2q3h_A RAS homolog gene family 99.9 2.4E-22 8.1E-27 138.7 10.7 128 8-154 47-193 (201)
81 1ky3_A GTP-binding protein YPT 99.9 2.9E-22 9.8E-27 135.7 10.7 131 8-154 35-176 (182)
82 1g16_A RAS-related protein SEC 99.9 8.6E-23 2.9E-27 136.9 7.9 129 8-154 30-163 (170)
83 3c5c_A RAS-like protein 12; GD 99.9 1.2E-22 4E-27 139.1 8.3 130 7-154 47-184 (187)
84 3con_A GTPase NRAS; structural 99.9 1.1E-21 3.9E-26 134.1 12.9 130 8-154 48-181 (190)
85 2gco_A H9, RHO-related GTP-bin 99.9 1.3E-21 4.5E-26 135.2 13.1 128 7-153 51-197 (201)
86 1vg8_A RAS-related protein RAB 99.9 3.1E-22 1.1E-26 138.5 9.9 131 8-154 35-173 (207)
87 4djt_A GTP-binding nuclear pro 99.9 2.7E-22 9.4E-27 140.1 9.7 135 2-154 31-173 (218)
88 3cph_A RAS-related protein SEC 99.9 5.1E-22 1.7E-26 138.0 11.0 129 8-154 47-180 (213)
89 2ce2_X GTPase HRAS; signaling 99.9 9.6E-22 3.3E-26 130.9 11.8 130 8-154 30-163 (166)
90 2j1l_A RHO-related GTP-binding 99.9 2.2E-22 7.5E-27 140.5 8.9 128 8-154 61-207 (214)
91 1mh1_A RAC1; GTP-binding, GTPa 99.9 8.4E-22 2.9E-26 133.9 11.4 129 7-154 31-178 (186)
92 2j0v_A RAC-like GTP-binding pr 99.9 2.2E-22 7.4E-27 140.0 8.7 129 7-154 35-178 (212)
93 3gj0_A GTP-binding nuclear pro 99.9 1.7E-22 5.8E-27 141.5 8.0 129 7-154 41-173 (221)
94 2xtz_A Guanine nucleotide-bind 99.9 6.5E-23 2.2E-27 153.0 5.9 133 12-154 163-343 (354)
95 1m7b_A RND3/RHOE small GTP-bin 99.9 3.6E-22 1.2E-26 136.1 8.9 128 8-153 34-180 (184)
96 2erx_A GTP-binding protein DI- 99.9 7.7E-22 2.6E-26 132.3 10.3 130 8-154 30-165 (172)
97 4gzl_A RAS-related C3 botulinu 99.9 9.2E-22 3.1E-26 136.4 10.5 129 8-154 57-203 (204)
98 3l0i_B RAS-related protein RAB 99.9 1.9E-23 6.3E-28 144.3 1.9 135 2-154 53-194 (199)
99 2gf0_A GTP-binding protein DI- 99.9 1.3E-21 4.5E-26 134.5 10.9 130 8-154 35-169 (199)
100 1gwn_A RHO-related GTP-binding 99.9 7.7E-22 2.6E-26 137.1 8.7 128 8-153 55-201 (205)
101 2fv8_A H6, RHO-related GTP-bin 99.9 3.1E-21 1.1E-25 133.9 11.8 142 8-154 52-198 (207)
102 3bwd_D RAC-like GTP-binding pr 99.9 2.6E-22 9E-27 136.1 5.8 128 8-154 35-179 (182)
103 2cjw_A GTP-binding protein GEM 99.9 5.2E-21 1.8E-25 131.6 11.2 130 8-154 34-170 (192)
104 3l82_B F-box only protein 4; T 99.9 3.9E-21 1.3E-25 132.4 9.9 108 33-154 109-221 (227)
105 3th5_A RAS-related C3 botulinu 99.7 1.3E-22 4.5E-27 140.4 0.0 148 2-154 50-203 (204)
106 3r7w_B Gtpase2, GTP-binding pr 99.8 6.9E-21 2.4E-25 140.1 8.4 133 9-154 30-172 (331)
107 2wkq_A NPH1-1, RAS-related C3 99.8 3.3E-20 1.1E-24 136.8 10.5 129 7-154 181-328 (332)
108 3llu_A RAS-related GTP-binding 99.8 3.6E-20 1.2E-24 127.5 8.1 118 26-154 69-195 (196)
109 1u0l_A Probable GTPase ENGC; p 99.8 9.2E-21 3.1E-25 138.9 5.1 129 3-153 38-170 (301)
110 2zej_A Dardarin, leucine-rich 99.8 1.5E-20 5E-25 128.3 4.9 132 8-154 31-176 (184)
111 2lkc_A Translation initiation 99.8 2.2E-19 7.6E-24 121.1 10.1 132 9-154 36-169 (178)
112 3r7w_A Gtpase1, GTP-binding pr 99.8 2.6E-19 8.9E-24 131.5 10.7 128 9-153 34-178 (307)
113 2dyk_A GTP-binding protein; GT 99.8 3.6E-19 1.2E-23 118.2 9.7 115 16-155 39-161 (161)
114 3l2o_B F-box only protein 4; s 99.8 1E-19 3.6E-24 130.8 7.1 108 33-154 194-306 (312)
115 2qu8_A Putative nucleolar GTP- 99.8 5.7E-18 1.9E-22 119.1 13.8 125 13-154 63-203 (228)
116 2wji_A Ferrous iron transport 99.8 3.3E-18 1.1E-22 114.6 11.9 119 9-154 31-163 (165)
117 2f9l_A RAB11B, member RAS onco 99.8 1.9E-18 6.7E-23 119.1 11.1 129 8-154 32-166 (199)
118 1svi_A GTP-binding protein YSX 99.8 1E-18 3.6E-23 119.6 9.6 126 7-154 49-193 (195)
119 2gj8_A MNME, tRNA modification 99.8 8.9E-19 3E-23 118.3 9.1 116 15-154 41-164 (172)
120 3pqc_A Probable GTP-binding pr 99.8 9.1E-19 3.1E-23 119.6 7.9 133 3-155 44-193 (195)
121 3c5h_A Glucocorticoid receptor 99.8 1.7E-19 5.8E-24 129.2 3.2 114 25-154 94-253 (255)
122 3iev_A GTP-binding protein ERA 99.8 1.5E-17 5.1E-22 122.2 13.4 125 13-155 45-181 (308)
123 1oix_A RAS-related protein RAB 99.7 9.5E-18 3.2E-22 115.1 9.5 129 8-154 56-190 (191)
124 2wjg_A FEOB, ferrous iron tran 99.7 3.3E-17 1.1E-21 111.5 9.6 119 9-154 35-167 (188)
125 2cxx_A Probable GTP-binding pr 99.7 3.8E-18 1.3E-22 116.2 4.2 134 8-154 28-182 (190)
126 4dhe_A Probable GTP-binding pr 99.7 4E-17 1.4E-21 114.0 9.5 117 24-155 77-210 (223)
127 1wf3_A GTP-binding protein; GT 99.7 1E-16 3.5E-21 117.4 11.9 117 18-154 47-171 (301)
128 3dpu_A RAB family protein; roc 99.7 4.6E-18 1.6E-22 133.2 4.4 125 8-154 68-206 (535)
129 3iby_A Ferrous iron transport 99.7 1.8E-17 6.1E-22 118.9 7.0 117 10-153 30-164 (256)
130 1xzp_A Probable tRNA modificat 99.7 1.9E-16 6.5E-21 122.4 13.1 117 13-154 278-403 (482)
131 3gee_A MNME, tRNA modification 99.7 1.2E-16 3.9E-21 123.5 11.1 118 13-154 268-396 (476)
132 3sjy_A Translation initiation 99.7 2.1E-16 7.3E-21 119.9 11.5 112 26-154 75-190 (403)
133 3cb4_D GTP-binding protein LEP 99.7 3E-16 1E-20 124.0 12.3 119 18-155 58-181 (599)
134 2ywe_A GTP-binding protein LEP 99.7 4E-16 1.4E-20 123.2 12.6 111 26-155 73-183 (600)
135 1mky_A Probable GTP-binding pr 99.7 1.7E-16 5.7E-21 121.7 10.0 115 16-154 39-164 (439)
136 3a1s_A Iron(II) transport prot 99.7 1.1E-16 3.9E-21 114.8 8.3 109 18-153 44-164 (258)
137 1lnz_A SPO0B-associated GTP-bi 99.7 6.3E-17 2.1E-21 120.3 6.7 126 12-154 191-328 (342)
138 3qq5_A Small GTP-binding prote 99.7 1.4E-16 4.7E-21 121.4 8.3 118 13-154 69-194 (423)
139 3i8s_A Ferrous iron transport 99.7 7.1E-17 2.4E-21 116.8 6.5 111 17-154 41-167 (274)
140 1s0u_A EIF-2-gamma, translatio 99.7 1.9E-15 6.6E-20 114.8 14.3 112 26-154 81-196 (408)
141 4dcu_A GTP-binding protein ENG 99.7 2.4E-16 8.2E-21 121.4 9.4 121 17-154 234-367 (456)
142 2e87_A Hypothetical protein PH 99.7 5.7E-16 2E-20 115.8 11.1 124 12-154 200-334 (357)
143 3tr5_A RF-3, peptide chain rel 99.7 2.1E-15 7.3E-20 117.8 14.1 82 12-98 68-149 (528)
144 3b1v_A Ferrous iron uptake tra 99.7 2.3E-16 7.8E-21 114.0 8.0 103 25-154 48-162 (272)
145 2hjg_A GTP-binding protein ENG 99.6 4.3E-17 1.5E-21 124.9 3.4 126 4-154 25-163 (436)
146 1wb1_A Translation elongation 99.6 1.2E-15 4E-20 118.3 10.4 124 12-154 59-187 (482)
147 2hjg_A GTP-binding protein ENG 99.6 4E-16 1.4E-20 119.5 7.5 121 16-153 213-346 (436)
148 1nrj_B SR-beta, signal recogni 99.6 2.8E-17 9.5E-22 114.5 0.9 129 24-153 53-217 (218)
149 1kk1_A EIF2gamma; initiation o 99.6 3.8E-15 1.3E-19 113.3 11.8 112 26-154 83-198 (410)
150 3k53_A Ferrous iron transport 99.6 3.1E-15 1.1E-19 107.9 10.2 118 10-153 32-163 (271)
151 2elf_A Protein translation elo 99.6 2.3E-15 7.8E-20 113.1 9.4 124 10-154 44-178 (370)
152 1jny_A EF-1-alpha, elongation 99.6 1.3E-16 4.3E-21 122.3 2.6 118 12-145 70-202 (435)
153 1zun_B Sulfate adenylate trans 99.6 1.6E-14 5.6E-19 110.5 13.5 116 13-146 91-214 (434)
154 3geh_A MNME, tRNA modification 99.6 1.1E-15 3.9E-20 117.6 6.6 112 17-154 263-382 (462)
155 3j2k_7 ERF3, eukaryotic polype 99.6 7.3E-15 2.5E-19 112.6 10.8 120 13-148 82-217 (439)
156 1d2e_A Elongation factor TU (E 99.6 4.1E-15 1.4E-19 112.7 8.8 126 13-155 53-194 (397)
157 3p26_A Elongation factor 1 alp 99.6 4.8E-15 1.7E-19 114.9 8.8 122 13-145 98-227 (483)
158 2c78_A Elongation factor TU-A; 99.6 6.7E-15 2.3E-19 111.7 9.3 125 13-154 62-210 (405)
159 3izy_P Translation initiation 99.6 4.3E-16 1.5E-20 121.6 2.5 121 17-154 42-166 (537)
160 1r5b_A Eukaryotic peptide chai 99.6 7.9E-16 2.7E-20 118.8 2.8 122 10-147 105-243 (467)
161 2qtf_A Protein HFLX, GTP-bindi 99.6 9.1E-14 3.1E-18 104.2 13.5 128 10-154 210-352 (364)
162 1ega_A Protein (GTP-binding pr 99.6 4.3E-14 1.5E-18 103.4 11.2 116 18-154 48-173 (301)
163 4dcu_A GTP-binding protein ENG 99.5 1.6E-15 5.5E-20 116.7 3.3 122 9-154 50-183 (456)
164 1g7s_A Translation initiation 99.5 1.6E-14 5.5E-19 114.2 7.3 119 26-154 70-216 (594)
165 3izq_1 HBS1P, elongation facto 99.5 1.2E-14 4E-19 115.4 6.3 119 13-146 232-362 (611)
166 1zo1_I IF2, translation initia 99.5 2.9E-15 9.9E-20 116.1 2.1 118 18-152 43-163 (501)
167 1dar_A EF-G, elongation factor 99.5 5.7E-13 2E-17 107.2 14.4 85 9-98 60-144 (691)
168 3avx_A Elongation factor TS, e 99.5 1.8E-13 6.2E-18 113.9 11.1 120 18-154 351-484 (1289)
169 1f60_A Elongation factor EEF1A 99.5 1.7E-14 6E-19 111.1 4.3 118 12-145 71-201 (458)
170 2ged_A SR-beta, signal recogni 99.5 5.8E-15 2E-19 100.8 0.9 86 24-109 89-182 (193)
171 1mky_A Probable GTP-binding pr 99.5 2.2E-13 7.4E-18 104.5 9.5 121 16-153 218-352 (439)
172 2h5e_A Peptide chain release f 99.5 5.8E-13 2E-17 104.1 11.9 81 13-98 69-149 (529)
173 2aka_B Dynamin-1; fusion prote 99.5 2.3E-13 8E-18 98.9 8.5 110 25-152 124-249 (299)
174 3mca_A HBS1, elongation factor 99.4 1E-14 3.5E-19 115.4 0.7 126 13-154 242-395 (592)
175 2dy1_A Elongation factor G; tr 99.4 2.9E-12 9.8E-17 102.7 14.3 79 13-96 61-139 (665)
176 2xtp_A GTPase IMAP family memb 99.4 4.2E-13 1.4E-17 95.9 8.5 125 13-154 58-206 (260)
177 2rdo_7 EF-G, elongation factor 99.4 3.6E-12 1.2E-16 102.7 14.5 81 12-97 61-148 (704)
178 3t5d_A Septin-7; GTP-binding p 99.4 2E-13 6.9E-18 98.5 6.5 127 11-155 46-203 (274)
179 2yv5_A YJEQ protein; hydrolase 99.4 1.3E-13 4.4E-18 101.0 5.6 97 36-153 66-166 (302)
180 2xex_A Elongation factor G; GT 99.4 3.1E-12 1.1E-16 103.0 13.2 83 10-97 59-141 (693)
181 3lxx_A GTPase IMAP family memb 99.3 3E-12 1E-16 90.4 7.9 83 13-97 65-159 (239)
182 1pui_A ENGB, probable GTP-bind 99.3 2.6E-11 8.8E-16 83.6 12.0 124 8-154 53-197 (210)
183 3vqt_A RF-3, peptide chain rel 99.3 5.7E-11 1.9E-15 93.3 14.4 92 13-109 87-181 (548)
184 3lxw_A GTPase IMAP family memb 99.3 2E-11 6.8E-16 86.9 8.7 85 12-97 56-153 (247)
185 1udx_A The GTP-binding protein 99.3 1.6E-11 5.3E-16 93.4 8.6 125 12-154 190-323 (416)
186 2qag_A Septin-2, protein NEDD5 99.3 5.7E-13 2E-17 99.8 0.7 117 12-152 77-229 (361)
187 1jwy_B Dynamin A GTPase domain 99.2 2.1E-11 7.2E-16 89.3 7.3 113 24-154 129-260 (315)
188 2j69_A Bacterial dynamin-like 99.2 3.5E-11 1.2E-15 96.9 8.9 117 26-154 174-323 (695)
189 1yrb_A ATP(GTP)binding protein 99.2 6.3E-12 2.2E-16 89.7 4.0 127 26-154 109-255 (262)
190 3p32_A Probable GTPase RV1496/ 99.2 2.8E-11 9.6E-16 90.4 5.8 110 23-154 169-282 (355)
191 3h2y_A GTPase family protein; 99.1 4E-11 1.4E-15 90.0 5.1 102 34-152 54-156 (368)
192 3def_A T7I23.11 protein; chlor 99.1 1.3E-10 4.5E-15 83.2 6.7 83 13-96 71-164 (262)
193 2x2e_A Dynamin-1; nitration, h 99.1 1.5E-10 5.1E-15 86.4 6.5 111 25-152 129-254 (353)
194 1n0u_A EF-2, elongation factor 99.1 2.4E-10 8.2E-15 93.8 8.0 80 12-96 68-163 (842)
195 1puj_A YLQF, conserved hypothe 99.1 2.4E-10 8.2E-15 82.8 6.6 100 30-153 3-103 (282)
196 3ec1_A YQEH GTPase; atnos1, at 99.1 9.9E-11 3.4E-15 87.9 4.6 102 34-152 56-158 (369)
197 3j25_A Tetracycline resistance 99.1 1.5E-10 5.2E-15 92.4 5.6 138 13-155 54-238 (638)
198 1wxq_A GTP-binding protein; st 99.0 1.9E-11 6.6E-16 92.5 0.0 37 26-62 71-114 (397)
199 3t34_A Dynamin-related protein 99.0 2E-10 6.8E-15 85.8 4.8 105 25-149 135-254 (360)
200 2p67_A LAO/AO transport system 99.0 3.7E-10 1.3E-14 83.9 5.7 109 23-153 146-258 (341)
201 2wsm_A Hydrogenase expression/ 99.0 3.7E-10 1.3E-14 78.4 4.5 104 24-154 107-212 (221)
202 1h65_A Chloroplast outer envel 98.9 5.5E-09 1.9E-13 75.0 8.9 79 18-97 79-168 (270)
203 4fn5_A EF-G 1, elongation fact 98.9 3.6E-08 1.2E-12 79.6 13.8 92 13-109 65-166 (709)
204 2www_A Methylmalonic aciduria 98.9 4E-09 1.4E-13 78.6 6.7 110 23-154 164-277 (349)
205 1jal_A YCHF protein; nucleotid 98.8 5.7E-08 1.9E-12 72.6 11.9 50 12-61 35-108 (363)
206 3zvr_A Dynamin-1; hydrolase, D 98.8 2.8E-08 9.6E-13 80.5 8.8 111 25-152 149-274 (772)
207 2qnr_A Septin-2, protein NEDD5 98.8 1.8E-09 6E-14 79.0 1.7 105 26-154 76-212 (301)
208 2qpt_A EH domain-containing pr 98.7 1.2E-08 4.2E-13 80.2 5.8 68 26-97 154-232 (550)
209 3cnl_A YLQF, putative uncharac 98.7 6.1E-09 2.1E-13 74.7 1.9 94 33-153 4-98 (262)
210 2qag_C Septin-7; cell cycle, c 98.6 3.9E-08 1.3E-12 74.9 4.1 108 26-155 88-226 (418)
211 2dby_A GTP-binding protein; GD 98.5 7.6E-07 2.6E-11 66.7 10.4 37 25-61 68-111 (368)
212 4a9a_A Ribosome-interacting GT 98.4 9.5E-07 3.3E-11 66.3 8.2 143 11-155 104-299 (376)
213 2qm8_A GTPase/ATPase; G protei 98.4 5.3E-07 1.8E-11 66.8 6.1 105 23-153 145-258 (337)
214 1t9h_A YLOQ, probable GTPase E 98.3 1.4E-07 4.7E-12 69.1 0.7 88 43-150 80-171 (307)
215 2hf9_A Probable hydrogenase ni 98.1 1.8E-06 6.3E-11 59.8 3.2 57 83-154 164-222 (226)
216 2rcn_A Probable GTPase ENGC; Y 97.9 1.7E-05 5.9E-10 59.1 6.4 87 46-151 127-214 (358)
217 2j37_W Signal recognition part 97.6 0.00039 1.3E-08 54.1 9.3 118 24-153 182-310 (504)
218 2ohf_A Protein OLA1, GTP-bindi 97.5 0.00011 3.7E-09 55.5 4.2 52 12-63 55-130 (396)
219 1ni3_A YCHF GTPase, YCHF GTP-b 97.1 0.0063 2.2E-07 45.9 10.7 49 13-61 55-127 (392)
220 2v3c_C SRP54, signal recogniti 96.0 0.0085 2.9E-07 45.7 4.9 66 24-97 179-252 (432)
221 3dm5_A SRP54, signal recogniti 95.4 0.042 1.4E-06 42.1 6.5 66 24-97 181-253 (443)
222 4dzz_A Plasmid partitioning pr 94.8 0.068 2.3E-06 35.8 5.8 69 25-97 75-144 (206)
223 3ea0_A ATPase, para family; al 94.6 0.2 7E-06 34.4 8.0 82 25-110 118-199 (245)
224 3end_A Light-independent proto 92.4 0.3 1E-05 35.0 5.9 69 25-95 156-225 (307)
225 1j8m_F SRP54, signal recogniti 92.2 0.27 9.2E-06 35.5 5.3 65 24-96 179-252 (297)
226 2ph1_A Nucleotide-binding prot 92.0 0.68 2.3E-05 32.4 7.2 67 24-95 127-194 (262)
227 3k9g_A PF-32 protein; ssgcid, 91.6 0.97 3.3E-05 31.5 7.6 66 24-94 143-208 (267)
228 3cwq_A Para family chromosome 91.2 0.36 1.2E-05 32.7 4.9 67 25-97 67-134 (209)
229 3kl4_A SRP54, signal recogniti 90.7 0.47 1.6E-05 36.2 5.5 65 24-96 178-251 (433)
230 1tq4_A IIGP1, interferon-induc 90.4 1.6 5.5E-05 33.0 8.2 116 27-155 121-252 (413)
231 1g3q_A MIND ATPase, cell divis 88.6 2.3 8E-05 28.8 7.5 79 25-109 111-190 (237)
232 1wcv_1 SOJ, segregation protei 87.5 0.63 2.2E-05 32.4 4.0 70 24-97 110-183 (257)
233 2xxa_A Signal recognition part 87.3 1.6 5.5E-05 33.2 6.4 66 24-97 182-254 (433)
234 3kjh_A CO dehydrogenase/acetyl 86.1 0.69 2.4E-05 31.7 3.6 78 24-109 130-207 (254)
235 3ec1_A YQEH GTPase; atnos1, at 85.8 0.043 1.5E-06 40.9 -3.0 66 27-97 213-288 (369)
236 3q9l_A Septum site-determining 85.8 1 3.4E-05 31.1 4.3 82 25-109 113-204 (260)
237 3h2y_A GTPase family protein; 81.5 0.13 4.6E-06 38.2 -1.9 72 28-104 213-294 (368)
238 3szr_A Interferon-induced GTP- 81.3 4 0.00014 32.4 6.4 69 26-98 147-229 (608)
239 1hyq_A MIND, cell division inh 81.2 1.5 5.2E-05 30.4 3.6 66 25-96 110-175 (263)
240 3la6_A Tyrosine-protein kinase 80.7 11 0.00039 26.7 8.2 67 26-97 202-268 (286)
241 3bfv_A CAPA1, CAPB2, membrane 80.6 3.9 0.00013 28.8 5.7 65 26-96 192-257 (271)
242 3u7r_A NADPH-dependent FMN red 79.8 1.5 5.1E-05 29.4 3.1 52 42-93 60-114 (190)
243 2amj_A Modulator of drug activ 79.7 8.4 0.00029 25.8 6.9 67 25-92 47-136 (204)
244 3ha2_A NADPH-quinone reductase 78.9 11 0.00039 24.7 7.7 65 28-93 31-102 (177)
245 2vzf_A NADH-dependent FMN redu 78.4 6.8 0.00023 26.0 6.1 66 25-91 34-110 (197)
246 2ffh_A Protein (FFH); SRP54, s 77.1 3.6 0.00012 31.3 4.8 66 24-96 179-250 (425)
247 2q62_A ARSH; alpha/beta, flavo 76.1 6.5 0.00022 27.4 5.6 51 42-92 91-145 (247)
248 4hs4_A Chromate reductase; tri 75.0 8 0.00027 25.9 5.7 51 42-92 66-118 (199)
249 2qag_B Septin-6, protein NEDD5 74.2 1.2 4.2E-05 33.8 1.5 16 82-97 175-190 (427)
250 2ark_A Flavodoxin; FMN, struct 74.1 16 0.00053 23.9 7.0 65 24-94 33-99 (188)
251 3k1y_A Oxidoreductase; structu 74.0 7.3 0.00025 26.0 5.2 49 42-91 78-126 (191)
252 3fvw_A Putative NAD(P)H-depend 73.9 5.6 0.00019 26.4 4.7 69 42-110 60-137 (192)
253 3ez9_A Para; DNA binding, wing 72.8 8.6 0.00029 28.6 5.9 34 25-60 247-280 (403)
254 1cp2_A CP2, nitrogenase iron p 72.7 3.2 0.00011 28.8 3.3 70 25-95 115-186 (269)
255 2xj4_A MIPZ; replication, cell 72.6 2.6 8.9E-05 29.8 2.9 34 25-60 103-136 (286)
256 2oze_A ORF delta'; para, walke 71.8 3.2 0.00011 29.3 3.2 70 25-97 154-226 (298)
257 4ici_A Putative flavoprotein; 70.8 19 0.00063 23.4 7.4 61 46-110 84-144 (171)
258 3lcm_A SMU.1420, putative oxid 70.2 7.8 0.00027 25.8 4.7 51 43-93 67-129 (196)
259 3pg5_A Uncharacterized protein 69.9 7.8 0.00027 28.5 5.0 34 25-60 153-186 (361)
260 3sop_A Neuronal-specific septi 68.9 10 0.00034 26.7 5.2 43 49-97 111-154 (270)
261 3svl_A Protein YIEF; E. coli C 68.7 17 0.00056 24.2 6.1 51 43-93 66-118 (193)
262 1rtt_A Conserved hypothetical 66.0 5.7 0.0002 26.1 3.3 51 43-93 66-118 (193)
263 2afh_E Nitrogenase iron protei 66.0 6 0.00021 27.8 3.6 70 25-95 118-189 (289)
264 3f2v_A General stress protein 66.0 8.9 0.0003 25.6 4.3 50 44-93 53-110 (192)
265 3cio_A ETK, tyrosine-protein k 65.1 26 0.0009 24.9 6.9 65 26-96 214-279 (299)
266 1t0i_A YLR011WP; FMN binding p 63.9 14 0.00047 24.1 4.9 47 43-91 78-124 (191)
267 1d4a_A DT-diaphorase, quinone 63.3 10 0.00035 26.7 4.4 49 46-94 90-150 (273)
268 3r6w_A FMN-dependent NADH-azor 59.9 14 0.00049 24.6 4.5 50 44-93 82-147 (212)
269 1zu4_A FTSY; GTPase, signal re 59.5 22 0.00074 25.7 5.6 67 24-97 190-268 (320)
270 3rpe_A MDAB, modulator of drug 59.2 25 0.00086 24.0 5.6 51 25-76 60-110 (218)
271 3tem_A Ribosyldihydronicotinam 59.1 18 0.00062 24.7 4.9 51 44-94 87-149 (228)
272 2hpv_A FMN-dependent NADH-azor 58.0 20 0.00067 23.7 4.9 48 45-92 90-149 (208)
273 1bif_A 6-phosphofructo-2-kinas 57.9 9.7 0.00033 29.0 3.7 49 26-75 87-145 (469)
274 3hyn_A Putative signal transdu 57.8 22 0.00076 23.8 4.9 60 31-94 60-120 (189)
275 1t5b_A Acyl carrier protein ph 57.8 14 0.00048 24.1 4.1 50 44-93 81-142 (201)
276 2a5l_A Trp repressor binding p 57.5 22 0.00075 23.1 5.1 50 45-94 67-119 (200)
277 3p0r_A Azoreductase; structura 54.5 24 0.00083 23.6 4.9 50 43-92 86-147 (211)
278 3b6i_A Flavoprotein WRBA; flav 54.4 24 0.00081 23.0 4.8 50 44-93 63-115 (198)
279 1ls1_A Signal recognition part 54.2 17 0.00058 25.9 4.3 66 24-97 179-251 (295)
280 1rli_A Trp repressor binding p 52.9 17 0.00059 23.3 3.9 49 44-92 66-124 (184)
281 3gfs_A FMN-dependent NADPH-azo 52.6 5.4 0.00018 25.8 1.3 50 43-93 57-106 (174)
282 1sqs_A Conserved hypothetical 52.3 29 0.00099 23.6 5.1 49 44-92 74-125 (242)
283 1wgn_A UBAP1, ubiquitin associ 50.8 9.2 0.00031 20.6 1.8 17 139-155 43-59 (63)
284 1vma_A Cell division protein F 50.0 23 0.0008 25.4 4.5 67 24-97 185-263 (306)
285 3l9w_A Glutathione-regulated p 50.0 34 0.0011 25.7 5.5 51 44-94 287-345 (413)
286 2l82_A Designed protein OR32; 49.2 33 0.0011 20.8 4.3 48 39-95 68-115 (162)
287 5nul_A Flavodoxin; electron tr 47.2 36 0.0012 20.6 4.6 61 47-110 43-105 (138)
288 2p62_A Hypothetical protein PH 45.7 59 0.002 22.6 5.6 62 15-79 47-115 (241)
289 2fzv_A Putative arsenical resi 45.4 23 0.00078 25.2 3.7 50 43-92 117-170 (279)
290 3u7i_A FMN-dependent NADH-azor 43.9 43 0.0015 22.7 4.8 52 43-94 88-152 (223)
291 2fz5_A Flavodoxin; alpha/beta 43.0 52 0.0018 19.7 6.8 61 25-93 28-90 (137)
292 1byi_A Dethiobiotin synthase; 41.9 67 0.0023 21.1 5.6 68 24-96 107-180 (224)
293 2zki_A 199AA long hypothetical 40.3 41 0.0014 21.8 4.2 49 46-94 67-118 (199)
294 1eiw_A Hypothetical protein MT 37.1 31 0.001 20.9 2.9 44 45-93 34-77 (111)
295 3s2y_A Chromate reductase; ura 42.9 7.3 0.00025 26.1 0.0 50 43-92 67-118 (199)
296 1ydg_A Trp repressor binding p 35.4 31 0.0011 22.8 3.0 48 46-93 75-125 (211)
297 3d7n_A Flavodoxin, WRBA-like p 35.0 41 0.0014 22.0 3.6 49 45-93 50-101 (193)
298 3klb_A Putative flavoprotein; 34.3 88 0.003 19.7 7.0 59 47-109 76-134 (162)
299 1s2d_A Purine trans deoxyribos 34.3 66 0.0022 20.9 4.3 40 45-90 77-116 (167)
300 2q9u_A A-type flavoprotein; fl 33.7 87 0.003 23.0 5.5 80 25-109 285-365 (414)
301 3e70_C DPA, signal recognition 32.9 75 0.0026 23.0 4.9 63 25-95 211-280 (328)
302 4gi5_A Quinone reductase; prot 32.2 86 0.0029 22.2 5.0 33 45-77 108-140 (280)
303 2yhs_A FTSY, cell division pro 30.7 42 0.0015 26.1 3.4 65 24-95 374-450 (503)
304 2px0_A Flagellar biosynthesis 30.7 1.4E+02 0.0049 21.0 8.6 67 24-97 181-253 (296)
305 3ez2_A Plasmid partition prote 30.7 55 0.0019 24.1 4.0 35 24-60 243-277 (398)
306 3h75_A Periplasmic sugar-bindi 28.5 1E+02 0.0034 21.8 5.0 61 25-95 34-98 (350)
307 3ehd_A Uncharacterized conserv 27.6 82 0.0028 20.3 3.9 44 44-93 64-107 (162)
308 3uc9_A Increased recombination 26.9 1.1E+02 0.0038 21.1 4.6 20 50-69 103-122 (233)
309 1obo_A Flavodoxin; electron tr 25.8 78 0.0027 19.9 3.6 46 46-92 43-89 (169)
310 1f8y_A Nucleoside 2-deoxyribos 25.5 65 0.0022 20.6 3.1 43 45-93 74-116 (157)
311 3gv0_A Transcriptional regulat 24.8 96 0.0033 21.2 4.2 60 24-94 39-100 (288)
312 2ohh_A Type A flavoprotein FPR 24.3 1E+02 0.0036 22.4 4.5 82 25-110 285-368 (404)
313 3fwy_A Light-independent proto 24.1 2E+02 0.0068 20.5 6.8 69 25-95 163-232 (314)
314 2him_A L-asparaginase 1; hydro 23.8 2.2E+02 0.0075 20.9 6.0 47 43-95 95-141 (358)
315 1e5d_A Rubredoxin\:oxygen oxid 23.1 2.2E+02 0.0074 20.6 6.7 65 25-92 281-345 (402)
316 3hly_A Flavodoxin-like domain; 22.9 1.5E+02 0.005 18.6 4.8 79 25-110 29-107 (161)
317 3fkq_A NTRC-like two-domain pr 22.0 58 0.002 23.8 2.6 35 24-60 258-292 (373)
318 1ag9_A Flavodoxin; electron tr 21.3 1E+02 0.0034 19.6 3.5 44 47-91 43-87 (175)
319 3qk7_A Transcriptional regulat 21.3 1E+02 0.0034 21.2 3.7 60 24-94 39-99 (294)
320 2f62_A Nucleoside 2-deoxyribos 21.3 92 0.0031 20.0 3.2 44 44-93 62-108 (161)
321 1rj9_A FTSY, signal recognitio 20.8 2.3E+02 0.0079 20.1 7.5 65 25-96 184-260 (304)
322 3pzx_A Formate--tetrahydrofola 20.6 1.3E+02 0.0044 23.7 4.2 54 82-152 373-426 (557)
323 1czn_A Flavodoxin; FMN binding 20.4 66 0.0022 20.2 2.4 46 46-92 43-89 (169)
No 1
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=8.2e-29 Score=171.44 Aligned_cols=154 Identities=62% Similarity=1.101 Sum_probs=117.9
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||++.+...+.++++++++|||||++.++..+..+++++|++++|+|++++.+|..+..|+..+++....
T Consensus 45 l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~ 124 (198)
T 1f6b_A 45 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 124 (198)
T ss_dssp HSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred HhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCccc
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999998765445
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.++|+++|+||+|+.+..+.+++.+.+.....+..+............+.+++|||++|.|++++|++|.+.+.
T Consensus 125 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 125 ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp TTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred CCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67999999999999877778888887765332222221111222235689999999999999999999998763
No 2
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=5e-28 Score=165.19 Aligned_cols=141 Identities=30% Similarity=0.588 Sum_probs=120.2
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++.+..+.||.|++...+.++++++++|||||++.++..|..+++++|++++|+|++++.++.....|+..++.....
T Consensus 36 l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 115 (181)
T 1fzq_A 36 LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 115 (181)
T ss_dssp HCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGG
T ss_pred HhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhh
Confidence 45566777899999988899999999999999999999999999999999999999999999999999999888765445
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+....+++.+.+... .+....+.+++|||++|.|++++|+++.+.+
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 116 SCVPVLIFANKQDLLTAAPASEIAEGLNLH------------TIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred cCCCEEEEEECcCcccCCCHHHHHHHhCch------------hccCCceEEEEccCCCCCCHHHHHHHHHHHH
Confidence 679999999999998766666666655431 1334567899999999999999999998765
No 3
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=7.6e-28 Score=161.05 Aligned_cols=139 Identities=30% Similarity=0.565 Sum_probs=118.5
Q ss_pred CCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 4 NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 4 ~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
++++..+.||++.....+..+++++++|||||++.++..+..+++++|++++|+|++++.++.....|+..++......+
T Consensus 22 ~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 101 (164)
T 1r8s_A 22 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRD 101 (164)
T ss_dssp HHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred cCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcC
Confidence 45566788999988888888889999999999999999999999999999999999999999999999998876555567
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+.....++...+.. ..+....+++++|||++|.|++++++++.+.+
T Consensus 102 ~piilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 102 AVLLVFANKQDLPNAMNAAEITDKLGL------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp CEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CeEEEEEECcCCcCCCCHHHHHHHhCc------------ccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence 999999999999876666666665543 11334567899999999999999999998765
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=9.9e-29 Score=173.42 Aligned_cols=134 Identities=21% Similarity=0.229 Sum_probs=104.9
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++++ ..+.||+|.. ...+..++ +++++|||+|+++|+.+++.|+++++++++|||++++.+|+.+..|+..+..
T Consensus 34 ~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~ 113 (216)
T 4dkx_A 34 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT 113 (216)
T ss_dssp HHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred HhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 34553 5788999975 45556655 8999999999999999999999999999999999999999999999998865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ..+.|++||+||+|+.+ .++.++..++... .++.+++|||++|.||+++|+.|++.+
T Consensus 114 ~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~-----------------~~~~~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 114 ER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp HH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEEBTTTTBSHHHHHHHHHHHC
T ss_pred hc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH-----------------hCCeeEEEeCCCCcCHHHHHHHHHHHH
Confidence 43 35789999999999976 5677777766655 346899999999999999999998765
No 5
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.7e-27 Score=163.70 Aligned_cols=148 Identities=57% Similarity=0.987 Sum_probs=122.4
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||.+.....+.++++++++|||||++.++..+..+++++|++++|+|++++.+++....|+..+++....
T Consensus 43 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 122 (190)
T 1m2o_B 43 LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL 122 (190)
T ss_dssp HHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred HhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhh
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999998765444
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+..+.+++.+.++... ...++. ......+.+++|||++|.|++++|++|.+.+
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 123 KDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR----IEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-------CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc----ccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 6799999999999987777788877766521 111111 0223567899999999999999999998764
No 6
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.9e-27 Score=162.80 Aligned_cols=141 Identities=23% Similarity=0.534 Sum_probs=117.0
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||+|.....+.++++++++|||||++.++..+..+++++|++++|+|++++.+++....|+..++.....
T Consensus 36 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 115 (187)
T 1zj6_A 36 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115 (187)
T ss_dssp HHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGG
T ss_pred HhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhh
Confidence 34566668899999999999999999999999999999999999999999999999999999999999999999865434
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+.....++.+.+... .+...++.+++|||++|.|+++++++|.+.+
T Consensus 116 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 116 RKAGLLIFANKQDVKECMTVAEISQFLKLT------------SIKDHQWHIQACCALTGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChh------------hhcCCCcEEEEccCCCCcCHHHHHHHHHHHH
Confidence 679999999999998766677777666541 1334568999999999999999999998765
No 7
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=4e-27 Score=158.41 Aligned_cols=140 Identities=28% Similarity=0.537 Sum_probs=119.8
Q ss_pred CCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 3 KNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 3 ~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
.++.+..+.||.|.....+.+++.++++|||||+..+...+..+++++|++++|+|++++.++.....|+..++......
T Consensus 28 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 107 (171)
T 1upt_A 28 QVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR 107 (171)
T ss_dssp HHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGT
T ss_pred hcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhC
Confidence 35566778999999889999999999999999999999999999999999999999999999999999998887654446
Q ss_pred CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.+.....++...+... .+...++.+++|||++|.|++++++++.+.+
T Consensus 108 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 108 KAILVVFANKQDMEQAMTSSEMANSLGLP------------ALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp TCEEEEEEECTTSTTCCCHHHHHHHHTGG------------GCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCcCCCCHHHHHHHhCch------------hccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 79999999999998766666666665431 1334567999999999999999999998764
No 8
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=2.5e-27 Score=161.43 Aligned_cols=141 Identities=23% Similarity=0.534 Sum_probs=120.4
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||.|.....+.++++++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus 41 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~ 120 (181)
T 2h17_A 41 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 120 (181)
T ss_dssp HHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGG
T ss_pred HhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhh
Confidence 34566677889999999999999999999999999999999999999999999999999999999999999988765434
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+.....++.+.+... .+...++.+++|||++|.|++++|++|.+.+
T Consensus 121 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 121 RKAGLLIFANKQDVKECMTVAEISQFLKLT------------SIKDHQWHIQACCALTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHTC-
T ss_pred CCCeEEEEEECCCcccCCCHHHHHHHhCcc------------cccCCceEEEEccCCCCcCHHHHHHHHHhhC
Confidence 679999999999998766677777766541 2334567999999999999999999998754
No 9
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=5.8e-27 Score=160.03 Aligned_cols=141 Identities=26% Similarity=0.515 Sum_probs=120.3
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.+++...+.||+|.....+.++++++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus 38 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 117 (186)
T 1ksh_A 38 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL 117 (186)
T ss_dssp HTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred HhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhc
Confidence 34555778899999988899999999999999999999999999999999999999999999999999999988766445
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+.....++.+.+.. ..+...++++++|||++|.|++++++++.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALEL------------DSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTG------------GGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhCh------------hhccCCceEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 67999999999999876666666666553 11234567999999999999999999998764
No 10
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=5.4e-27 Score=160.64 Aligned_cols=142 Identities=33% Similarity=0.553 Sum_probs=121.9
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
+|.++++..+.||+|.....+.++++++++|||||++.++..+..+++++|++++|+|+++++++.....|+..++....
T Consensus 41 ~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~ 120 (189)
T 2x77_A 41 RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE 120 (189)
T ss_dssp HTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST
T ss_pred HHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh
Confidence 35667777889999999999999999999999999999999999999999999999999999999999999998887655
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..++|+++|+||+|+.+.....++...+... .+...++.+++|||++|.|++++++++.+.+
T Consensus 121 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 121 LRKSLLLIFANKQDLPDAASEAEIAEQLGVS------------SIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182 (189)
T ss_dssp TTTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCeEEEEEECCCCcCCCCHHHHHHHhChh------------hccCCceEEEEccCCCccCHHHHHHHHHHHH
Confidence 5689999999999998766666666655431 2334567999999999999999999998764
No 11
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=2.6e-27 Score=163.04 Aligned_cols=141 Identities=30% Similarity=0.559 Sum_probs=116.0
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||++.....+..+++++++|||||++.++..+..+++++|++++|+|++++.+++.+..|+..++.....
T Consensus 49 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~ 128 (192)
T 2b6h_A 49 LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDEL 128 (192)
T ss_dssp HCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGG
T ss_pred HHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhccccc
Confidence 45667778899999888889999999999999999999999999999999999999999999999999999998765545
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+.....++...+... .....++.+++|||++|.|+++++++|.+.+
T Consensus 129 ~~~piilv~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 129 RDAVLLVFANKQDMPNAMPVSELTDKLGLQ------------HLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGG------------GCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 679999999999998766666776665541 1334567899999999999999999998865
No 12
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1e-26 Score=158.25 Aligned_cols=141 Identities=30% Similarity=0.539 Sum_probs=117.9
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||+|.....+.+++.++.+|||||+..+...+..+++++|++++|+|++++.+++....|+..++.....
T Consensus 38 l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~ 117 (183)
T 1moz_A 38 LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117 (183)
T ss_dssp TCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTT
T ss_pred HhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhh
Confidence 55666778899999999999999999999999999999999999999999999999999999999999999998765545
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+.....++.+.+... ......+.+++|||++|.|++++++++.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 118 QDAALLVFANKQDQPGALSASEVSKELNLV------------ELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SSCEEEEEEECTTSTTCCCHHHHHHHTTTT------------TCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCCCCCCHHHHHHHhCcc------------cccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 689999999999998766777777766542 1233567899999999999999999998764
No 13
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.9e-26 Score=158.13 Aligned_cols=141 Identities=31% Similarity=0.589 Sum_probs=120.5
Q ss_pred CCCCC--CCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 2 LKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 2 l~~~~--~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
|.++. ...+.||++.....+.++++++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..++...
T Consensus 41 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~ 120 (190)
T 2h57_A 41 LKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120 (190)
T ss_dssp TSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST
T ss_pred HhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh
Confidence 44554 4678899999889999999999999999999999999999999999999999999999999999999888765
Q ss_pred CC--CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 AL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~--~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .++|+++|+||+|+.+....+++.+.+... .+...++.+++|||++|.|+++++++|.+.+
T Consensus 121 ~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLE------------NIKDKPWHICASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp TTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGG------------GCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred hhccCCCeEEEEEeCcCcccCCCHHHHHHHhChh------------hccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 44 579999999999998776777777766531 1333568999999999999999999998765
No 14
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=3.4e-26 Score=156.79 Aligned_cols=139 Identities=29% Similarity=0.515 Sum_probs=117.2
Q ss_pred CCCC-CcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 4 NDRT-AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 4 ~~~~-~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
++++ ..+.||++.....+..+++.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..++......
T Consensus 44 ~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~ 123 (188)
T 1zd9_A 44 SGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQ 123 (188)
T ss_dssp HSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred cCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccC
Confidence 3444 467899999988888889999999999999999999999999999999999999999999999999887654446
Q ss_pred CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.+.....++...+... ......+.+++|||++|.|++++|++|.+.+
T Consensus 124 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 124 GIPVLVLGNKRDLPGALDEKELIEKMNLS------------AIQDREICCYSISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TCCEEEEEECTTSTTCCCHHHHHHHTTGG------------GCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred CCCEEEEEECCCCccCCCHHHHHHHhChh------------hhccCCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999998765666666655431 1233567899999999999999999999865
No 15
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.4e-26 Score=159.39 Aligned_cols=141 Identities=29% Similarity=0.565 Sum_probs=116.8
Q ss_pred CCCCCCC--cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 2 LKNDRTA--QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 2 l~~~~~~--~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
|.++.+. .+.||+|.....++..++.+++|||||++.+...+..+++++|++|+|+|++++.+|..+..|+..++...
T Consensus 37 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~ 116 (199)
T 4bas_A 37 VKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHE 116 (199)
T ss_dssp HSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSH
T ss_pred HhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhCh
Confidence 3445543 46899999888888888999999999999999999999999999999999999999999999999887542
Q ss_pred CC-------CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 80 AL-------TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 80 ~~-------~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.. .++|+++|+||+|+.+.....++...+... .. ....+.+++|||++|.|++++|++|.
T Consensus 117 ~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 184 (199)
T 4bas_A 117 DIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLT------------TLMGDHPFVIFASNGLKGTGVHEGFSWLQ 184 (199)
T ss_dssp HHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHH------------HHHTTSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred hhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcch------------hhccCCeeEEEEeeCCCccCHHHHHHHHH
Confidence 21 278999999999998776667776666541 11 34678999999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 185 ~~~ 187 (199)
T 4bas_A 185 ETA 187 (199)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 16
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.2e-25 Score=173.19 Aligned_cols=141 Identities=28% Similarity=0.543 Sum_probs=123.2
Q ss_pred CCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.++++..+.||+|++...++++++++++|||||++.+...+..+++++|++|+|||++++.+|..+..|+..+++....
T Consensus 342 l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~ 421 (497)
T 3lvq_E 342 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM 421 (497)
T ss_dssp HHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGG
T ss_pred HhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhc
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999876555
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+.....++...+... ......+.+++|||++|.|++++|++|.+.+
T Consensus 422 ~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 422 RDAIILIFANKQDLPDAMKPHEIQEKLGLT------------RIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp TTCEEEEEEECCSSSSCCCHHHHHHHTTCT------------TCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCCcEEEEEECCCCCcCCCHHHHHHHhchh------------hhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999998777777777766542 1334678899999999999999999998865
No 17
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=164.49 Aligned_cols=142 Identities=31% Similarity=0.561 Sum_probs=118.9
Q ss_pred CCCCCCCCcccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC
Q psy2161 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA 80 (155)
Q Consensus 1 ~l~~~~~~~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~ 80 (155)
||.++.+....||++.....+..+++++++|||||++.+...+..+++++|++|+|||++++.+|..+..|+..++....
T Consensus 184 ~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~ 263 (329)
T 3o47_A 184 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE 263 (329)
T ss_dssp HTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG
T ss_pred HHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc
Confidence 35667777778999999999999999999999999999999999999999999999999999999999989988876655
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..++|+++|+||+|+.+.....++...+... ......+.+++|||++|.|++++|++|.+.+
T Consensus 264 ~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~------------~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 264 LRDAVLLVFANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHHTCT------------TCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred cCCCeEEEEEECccCCcccCHHHHHHHhchh------------hhhcCCCEEEEEECCCCcCHHHHHHHHHHHH
Confidence 5689999999999998877777777776652 2344678999999999999999999998865
No 18
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.92 E-value=1.8e-24 Score=144.80 Aligned_cols=135 Identities=18% Similarity=0.166 Sum_probs=87.0
Q ss_pred CCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 3 KNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 3 ~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
.+.....+.||.|.. ...+.+++ +.+.+|||||+..+...+..+++.+|++++|+|++++.+++.+..|+..+....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 102 (166)
T 3q72_A 23 GGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRAR 102 (166)
T ss_dssp CCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC
T ss_pred cCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 344555666777775 44556665 789999999999999999999999999999999999999999999999988765
Q ss_pred CCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...++|+++|+||+|+.+ .+..++....... .++++++|||++|.|++++|+++.+.+
T Consensus 103 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 103 QTDDVPIILVGNKSDLVRSREVSVDEGRACAVV-----------------FDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp ---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH-----------------TTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEeccccccccccCHHHHHHHHHH-----------------hCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 567899999999999875 4455555444433 346899999999999999999998764
No 19
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.92 E-value=3.2e-25 Score=165.43 Aligned_cols=136 Identities=24% Similarity=0.372 Sum_probs=110.2
Q ss_pred cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhC
Q psy2161 9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLAD 78 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~ 78 (155)
.+.||+|++...+.++++++++|||||+++++..|.+||++++++|||+|+++ .+++.+...|+..+.++
T Consensus 176 ~~~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~ 255 (353)
T 1cip_A 176 TRVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNN 255 (353)
T ss_dssp CCCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred ccCceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcC
Confidence 35689999888999999999999999999999999999999999999999998 56789999999999876
Q ss_pred CCCCCCcEEEEEeCCCcCC-c----------------CCHHHHHhhhcccCccCCCcccccccc----cCccEEEEEeee
Q psy2161 79 DALTDVPILILGNKIDIFD-A----------------ASEDEVRHFFGLYGLTTGKEFTSREIL----QMRPIELFMCSV 137 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~-~----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa 137 (155)
....+.|++|++||+|+.. . .+.++...++... +..+ ....+.+++|||
T Consensus 256 ~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~----------f~~l~~~~~~~~~~~~etSA 325 (353)
T 1cip_A 256 KWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ----------FEDLNKRKDTKEIYTHFTCA 325 (353)
T ss_dssp GGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHH----------HHTTCSCTTTCCEEEEECCT
T ss_pred ccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHH----------HHHhhcccCCCceEEEEEEC
Confidence 6667899999999999853 1 2334444433210 0001 135789999999
Q ss_pred ccCCChHHHHHHHHhhc
Q psy2161 138 LKRQGFGNGFRWLANYI 154 (155)
Q Consensus 138 ~~~~~i~~~~~~l~~~i 154 (155)
++|.||.++|+++.+.+
T Consensus 326 ~~~~nV~~vF~~v~~~i 342 (353)
T 1cip_A 326 TDTKNVQFVFDAVTDVI 342 (353)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHH
Confidence 99999999999998753
No 20
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=5.8e-25 Score=162.19 Aligned_cols=145 Identities=19% Similarity=0.312 Sum_probs=111.9
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~~~~ 79 (155)
+.||+|+....++.+++++++|||+||+++++.|.+||++++++|||+|++ +.+++.+...|+..+.++.
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 579999999999999999999999999999999999999999999999665 6788888999999998877
Q ss_pred CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCccccc----------ccccCccEEEEEeeeccCCChHHHHH
Q psy2161 80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSR----------EILQMRPIELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~Sa~~~~~i~~~~~ 148 (155)
...+.|++|++||+|+.+ .+....+...++.++++........ .......+.++++||+++.||.++|.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~ 310 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFA 310 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHH
Confidence 677899999999999865 2222223333333332211111110 11234678899999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
.+.+.|
T Consensus 311 ~v~~~I 316 (327)
T 3ohm_A 311 AVKDTI 316 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987653
No 21
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.91 E-value=7.7e-24 Score=142.75 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=97.7
Q ss_pred CCCCCCcccCCCCCc--eeEEEECC--EEEEEEEcCCChh--hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 3 KNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ--ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 3 ~~~~~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~--~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
.++......||.|.+ ...+.+++ +++.+|||||+.. +...+..+++.+|++++|+|++++.+++.+..|+..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~ 104 (175)
T 2nzj_A 25 AGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLR 104 (175)
T ss_dssp HCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred hcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 445555566777775 55667776 6899999999987 56778889999999999999999999999999988887
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
......++|+++|+||+|+.+ .+..++....... .++++++|||++|.|++++|++|.+.+
T Consensus 105 ~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 105 RTHQADHVPIILVGNKADLARCREVSVEEGRACAVV-----------------FDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp HCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------HTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 654456799999999999975 3444544443332 245899999999999999999998754
No 22
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=146.02 Aligned_cols=129 Identities=16% Similarity=0.231 Sum_probs=101.4
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+.+++ +++++|||||++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus 56 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~ 134 (201)
T 2hup_A 56 ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSN 134 (201)
T ss_dssp ---------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677898864 56777777 799999999999999999999999999999999999999999999998886543 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..+++.+.... .++ .+++|||++|.|++++|++|.+.+
T Consensus 135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 135 IVQLLIGNKSDLSELREVSLAEAQSLAEH-----------------YDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECCccccccccCHHHHHHHHHH-----------------cCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999975 4566666665544 245 899999999999999999998754
No 23
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=1.8e-24 Score=148.43 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=102.4
Q ss_pred ccCCCCCceeEE---EEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC------CCCchHHHHHHHHHHHhC
Q psy2161 10 HMPTLHPTSEEL---SMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS------DRSRFPESKYELDSLLAD 78 (155)
Q Consensus 10 ~~pT~~~~~~~~---~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~------~~~~~~~~~~~l~~~~~~ 78 (155)
+.||+|.+.... ..+ ++++++|||||++.+...+..+++++|++++|||++ +..++..+..|+.++.
T Consensus 53 ~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-- 130 (198)
T 3t1o_A 53 DERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-- 130 (198)
T ss_dssp SCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--
T ss_pred cccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--
Confidence 456777653332 222 389999999999999999999999999999999999 4456677777887773
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....++|+++|+||+|+.+....+++.+.+.. .++ .+++|||++|.|++++|++|.+.+
T Consensus 131 ~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP-----------------EGKFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----------------TCCSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----------------cCCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 23468999999999999888888888887765 345 799999999999999999998754
No 24
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=2.6e-24 Score=146.36 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=92.9
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++.+ ..+.||++.. ...+.+++ +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus 28 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 107 (183)
T 2fu5_C 28 FSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIE 107 (183)
T ss_dssp --------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 444443 4677888864 55677777 899999999999999999999999999999999999999999989998886
Q ss_pred hCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... ..+.|+++|+||+|+.+ .+..+++...... .++.+++|||++|.|++++|+++.+.+
T Consensus 108 ~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 108 EHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD-----------------YGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp HHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH-----------------HTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred Hhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 532 34789999999999975 3455666555443 346899999999999999999998754
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.90 E-value=8.1e-24 Score=144.70 Aligned_cols=126 Identities=16% Similarity=0.224 Sum_probs=102.6
Q ss_pred CcccCCCCCceeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161 8 AQHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p 85 (155)
..+.||.+.....+.+++ +.+++|||+|++.++ +++++|++++|||++++.+|+.+..|+..+.......+.|
T Consensus 47 ~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p 121 (184)
T 3ihw_A 47 QEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVP 121 (184)
T ss_dssp CCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSC
T ss_pred CCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 457788666677788887 788999999998877 7788999999999999999999999999997655446789
Q ss_pred EEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 86 ILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 86 iilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++|+||+|+.+ .+..+++....... ..+.+++|||++|.|++++|+++.+.+
T Consensus 122 iilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 122 MVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEEECcccccccccccCHHHHHHHHHHc----------------CCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 999999999842 45666666655441 136899999999999999999998754
No 26
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3.3e-23 Score=141.95 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=107.6
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.......+
T Consensus 42 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 121 (195)
T 1x3s_A 42 PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND 121 (195)
T ss_dssp TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSC
T ss_pred ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCC
Confidence 4677888865 45666665 8999999999999999999999999999999999999999999999999876554567
Q ss_pred CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.++++||++|.|++++|++|.+.+
T Consensus 122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 122 IVNMLVGNKIDKENREVDRNEGLKFARK-----------------HSMLFIEASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp CEEEEEEECTTSSSCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECCcCcccccCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999965 4455555554443 346899999999999999999998754
No 27
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=1.2e-23 Score=145.47 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=92.0
Q ss_pred CcccCCCCC--ceeEEEEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-
Q psy2161 8 AQHMPTLHP--TSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA- 80 (155)
Q Consensus 8 ~~~~pT~~~--~~~~~~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~- 80 (155)
..+.||.+. ....+.++ .+.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.....
T Consensus 49 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 128 (208)
T 2yc2_C 49 KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD 128 (208)
T ss_dssp ------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC
T ss_pred CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence 477899984 46777777 47999999999999999999999999999999999999999999999988875433
Q ss_pred -CCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc-CCChHHHHHHHHhhc
Q psy2161 81 -LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK-RQGFGNGFRWLANYI 154 (155)
Q Consensus 81 -~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~l~~~i 154 (155)
..++|+++|+||+|+.+ .+..+++...... .++.+++|||++ |.|++++|+++.+.+
T Consensus 129 ~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT-----------------NTLDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp TTSCCEEEEEEECC-------CCCHHHHHHHHHH-----------------TTCEEEECCC-------CHHHHHHHHHH
T ss_pred cccCCcEEEEEECcccchhhccCCHHHHHHHHHH-----------------cCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 25789999999999865 4455666665544 246899999999 999999999998753
No 28
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.90 E-value=1e-23 Score=143.11 Aligned_cols=131 Identities=17% Similarity=0.180 Sum_probs=107.6
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+..++ +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus 32 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 111 (181)
T 3t5g_A 32 VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ 111 (181)
T ss_dssp CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45677888876 55566776 7889999999999999999999999999999999999999999999988876655568
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++|+++.+.+
T Consensus 112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 112 IPIMLVGNKKDLHMERVISYEEGKALAES-----------------WNAAFLESSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccchhcceecHHHHHHHHHH-----------------hCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999864 4566666665554 345899999999999999999998754
No 29
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.90 E-value=2.4e-23 Score=139.10 Aligned_cols=130 Identities=18% Similarity=0.255 Sum_probs=104.7
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.......++
T Consensus 31 ~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 110 (168)
T 1u8z_A 31 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 110 (168)
T ss_dssp SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4667888775 34566666 78999999999999999999999999999999999999999999999888765544579
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ ....+++...... .+++++++||++|.|++++|+++.+.+
T Consensus 111 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 111 PFLLVGNKSDLEDKRQVSVEEAKNRADQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999999999865 4455566555543 345899999999999999999998754
No 30
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.90 E-value=1.1e-22 Score=137.92 Aligned_cols=129 Identities=17% Similarity=0.289 Sum_probs=106.7
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 117 (181)
T 2efe_B 39 EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPN 117 (181)
T ss_dssp TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4566888875 45566665 799999999999999999999999999999999999999999999998886543 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..+++...... .++.++++||++|.|+++++++|.+.+
T Consensus 118 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 118 MVMALAGNKSDLLDARKVTAEDAQTYAQE-----------------NGLFFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEECCSSSCTTHHHHHHHHHHTC
T ss_pred CcEEEEEECCcccccccCCHHHHHHHHHH-----------------cCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999965 4455666655544 346899999999999999999998865
No 31
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=4.4e-24 Score=159.81 Aligned_cols=138 Identities=21% Similarity=0.404 Sum_probs=100.8
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~ 79 (155)
+.||+|+....+.++++++++|||||+++++..|.+||++++++|||+|+++ .+++.+...|+..+.+..
T Consensus 185 r~~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~ 264 (362)
T 1zcb_A 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264 (362)
T ss_dssp CCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG
T ss_pred cCCccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch
Confidence 4578898888899999999999999999999999999999999999999998 678999999999998766
Q ss_pred CCCCCcEEEEEeCCCcCC-c-----------------CCHHHHHhhhcccCccCCCccccccccc-CccEEEEEeeeccC
Q psy2161 80 ALTDVPILILGNKIDIFD-A-----------------ASEDEVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKR 140 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~-~-----------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 140 (155)
...+.|++|++||+|+.+ . .+.++...++... +. ...... ...+.+++|||++|
T Consensus 265 ~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~------f~-~l~~~~~~~~~~~~~tSA~d~ 337 (362)
T 1zcb_A 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC------FR-GKRRDQQQRPLYHHFTTAINT 337 (362)
T ss_dssp GGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHH------HH-TTCSSCC--CCEEEECCTTCH
T ss_pred hhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHH------HH-HhhcccCCCceEEEEEecCCc
Confidence 667899999999999853 1 2333333332100 00 000001 34678999999999
Q ss_pred CChHHHHHHHHhhc
Q psy2161 141 QGFGNGFRWLANYI 154 (155)
Q Consensus 141 ~~i~~~~~~l~~~i 154 (155)
.|+.++|+++.+.+
T Consensus 338 ~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 338 ENIRLVFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 99999999988653
No 32
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.90 E-value=8.4e-23 Score=136.79 Aligned_cols=130 Identities=16% Similarity=0.258 Sum_probs=106.2
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 111 (170)
T 1r2q_A 33 EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPN 111 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888875 45566654 899999999999999999999999999999999999999999999998886543 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.|+++|+||+|+.+ ....++....... .++.++++||++|.|+++++++|.+.+.
T Consensus 112 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 112 IVIALSGNKADLANKRAVDFQEAQSYADD-----------------NSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred CcEEEEEECccCccccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 89999999999865 3445555554433 3468999999999999999999998763
No 33
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.5e-23 Score=142.03 Aligned_cols=129 Identities=16% Similarity=0.267 Sum_probs=97.1
Q ss_pred CcccCCCCCce--eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+... ..+..++ +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..... .+
T Consensus 38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~ 116 (180)
T 2g6b_A 38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HD 116 (180)
T ss_dssp CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC-TT
T ss_pred CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CC
Confidence 36778998863 3446666 6999999999999999999999999999999999999999988899888765332 57
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++++++.+.+
T Consensus 117 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 117 VALMLLGNKVDSAHERVVKREDGEKLAKE-----------------YGLPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CEEEEEEECCSTTSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999975 3445555444433 245799999999999999999998754
No 34
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=3.1e-23 Score=143.85 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=105.6
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+.+++ +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~ 131 (201)
T 2ew1_A 53 PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNK 131 (201)
T ss_dssp TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888865 55677777 789999999999999999999999999999999999999998889988876432 346
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|+++.+.+
T Consensus 132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 132 VITVLVGNKIDLAERREVSQQRAEEFSEA-----------------QDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp CEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999864 4455555544433 345799999999999999999998754
No 35
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.90 E-value=2.7e-23 Score=141.30 Aligned_cols=131 Identities=15% Similarity=0.255 Sum_probs=108.3
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+..++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus 44 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 123 (183)
T 3kkq_A 44 VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRES 123 (183)
T ss_dssp CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSC
T ss_pred CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35677888875 45556666 6788899999999999999999999999999999999999999999988876444567
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..+++...... .++.+++|||+ +|.|++++|+++.+.+
T Consensus 124 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 124 FPMILVANKVDLMHLRKVTRDQGKEMATK-----------------YNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp CCEEEEEECTTCSTTCCSCHHHHHHHHHH-----------------HTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCchhccCcCHHHHHHHHHH-----------------hCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 89999999999875 5566666665554 23679999999 9999999999998764
No 36
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.90 E-value=1.8e-23 Score=139.84 Aligned_cols=131 Identities=16% Similarity=0.244 Sum_probs=105.8
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +++.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.......+.
T Consensus 30 ~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 109 (167)
T 1c1y_A 30 EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDV 109 (167)
T ss_dssp CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCC
T ss_pred CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCC
Confidence 4677888865 34445543 78999999999999999999999999999999999999999988898888764444679
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .+..+++....... ...+++++||++|.|++++++++.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 110 PMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999965 34455555544331 246899999999999999999998765
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.90 E-value=7.6e-23 Score=139.99 Aligned_cols=130 Identities=20% Similarity=0.303 Sum_probs=105.7
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhH-HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~-~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
..+.||++.. ...+.+++ +++.+|||||++.+. ..+..+++++|++++|+|++++.++..+..|+..+.......
T Consensus 47 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~ 126 (189)
T 1z06_A 47 DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 126 (189)
T ss_dssp SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS
T ss_pred CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence 4577888865 56667776 799999999999998 899999999999999999999999999999999887655456
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC---CChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR---QGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.+ .+..++....... .++.++++||++| .|++++|++|.+.+
T Consensus 127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 127 DIPRILVGNKCDLRSAIQVPTDLAQKFADT-----------------HSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCCEEEEEECccccccceeCHHHHHHHHHH-----------------cCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 799999999999965 3455555554433 2457999999999 99999999998765
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=2.9e-23 Score=142.57 Aligned_cols=129 Identities=17% Similarity=0.226 Sum_probs=106.8
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.+ ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~ 128 (192)
T 2fg5_A 50 HNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PEN 128 (192)
T ss_dssp TTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTT
T ss_pred CCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 4678999976 34455543 899999999999999999999999999999999999999999999998886432 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..+++.+.... .++.+++|||++|.|+++++++|.+.+
T Consensus 129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 129 IVMAIAGNKCDLSDIREVPLKDAKEYAES-----------------IGAIVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHT-----------------TTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 89999999999974 4456666665544 346899999999999999999998865
No 39
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.90 E-value=5.7e-23 Score=142.01 Aligned_cols=131 Identities=18% Similarity=0.251 Sum_probs=109.0
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......+
T Consensus 40 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 119 (206)
T 2bov_A 40 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN 119 (206)
T ss_dssp CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 35677888875 45667776 6899999999999999999999999999999999999999999999998876554557
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..+++...... .++.++++||++|.|++++|++|.+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEeccCccccccccHHHHHHHHHH-----------------hCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999875 4555666655543 345899999999999999999998754
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.90 E-value=2.4e-23 Score=141.02 Aligned_cols=132 Identities=11% Similarity=0.147 Sum_probs=100.7
Q ss_pred CCCCCCCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-
Q psy2161 2 LKNDRTAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA- 77 (155)
Q Consensus 2 l~~~~~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~- 77 (155)
|.++.+..+.||.+.. ...+.+++ +++++|||||++. ..+++++|++++|||++++.++..+..|+..+..
T Consensus 27 l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~ 101 (178)
T 2iwr_A 27 FLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSL 101 (178)
T ss_dssp HHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHH
Confidence 3455666688999875 56677776 7899999999986 4577889999999999999999998886544432
Q ss_pred -CCCCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 78 -DDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 78 -~~~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.....+.|+++|+||+|+.+ .+..+++....... .++.+++|||++|.|++++|+++.+
T Consensus 102 ~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 102 RGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------KRCSYYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp HCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH----------------SSEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred HhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh----------------cCCeEEEEeccccCCHHHHHHHHHH
Confidence 22235789999999999842 45555655544331 2478999999999999999999987
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 166 ~~ 167 (178)
T 2iwr_A 166 KV 167 (178)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 41
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.1e-22 Score=136.27 Aligned_cols=129 Identities=17% Similarity=0.315 Sum_probs=105.2
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 108 (170)
T 1ek0_A 30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKD 108 (170)
T ss_dssp TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCC
Confidence 4677898865 45666665 799999999999999999999999999999999999999999999998886543 357
Q ss_pred CcEEEEEeCCCcCCc-----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDA-----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+. +...+....... .++.++++||++|.|++++|+++.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEE-----------------KGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred CcEEEEEECCCccccccccCCCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999998642 333444443332 346899999999999999999999865
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.90 E-value=4.8e-23 Score=142.40 Aligned_cols=133 Identities=18% Similarity=0.271 Sum_probs=106.9
Q ss_pred CCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 4 NDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 4 ~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
++.+ ..+.||.|.. ...+..++ +++++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+...
T Consensus 30 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~ 109 (203)
T 1zbd_A 30 DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY 109 (203)
T ss_dssp TCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh
Confidence 4443 4678898865 45556665 79999999999999999999999999999999999999999988998888643
Q ss_pred CCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. ..+.|+++|+||+|+.+ .+...++...... .++.+++|||++|.|++++|++|.+.+
T Consensus 110 ~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 110 S-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH-----------------LGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp S-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred c-CCCCCEEEEEECcccCcccccCHHHHHHHHHH-----------------CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 2 35789999999999975 3445555554443 245899999999999999999998653
No 43
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.90 E-value=1.5e-24 Score=160.64 Aligned_cols=144 Identities=20% Similarity=0.317 Sum_probs=109.1
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~~~~~ 79 (155)
+.||+|+....+.++++++++|||+||++++..|.+||++++++|||+|++ +.+++.+...|+..++++.
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 678999999999999999999999999999999999999999999999998 6788999999999998877
Q ss_pred CCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccc-------c---------ccccC-----------ccEE
Q psy2161 80 ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTS-------R---------EILQM-----------RPIE 131 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~-------~---------~~~~~-----------~~~~ 131 (155)
...+.|++|++||+|+.+ .+...++...+..+..+.. .... + ..... +.+.
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~-~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 303 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDN-AVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVY 303 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTC-HHHHHHHHHHHHHTTSEEEESCC--------------CEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCC-HHHHHHHHHHhcccccchhhhhccccccccccccccCcceE
Confidence 777899999999999854 1111111122222111100 0000 0 00111 4688
Q ss_pred EEEeeeccCCChHHHHHHHHhhc
Q psy2161 132 LFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 132 ~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++++||+++.|+..+|..+.+.|
T Consensus 304 ~h~TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 304 TNPTNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 44
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.90 E-value=8.5e-23 Score=140.86 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=102.8
Q ss_pred cccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 9 QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 9 ~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
.+.||.+.. ...+.+++ +++.+|||+|+..+.. ++..+++++|++++|||++++.+|..+..|+..+.......+
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~ 130 (195)
T 3cbq_A 51 AHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHD 130 (195)
T ss_dssp GGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSC
T ss_pred cCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 345665553 55666776 7899999999987765 788899999999999999999999999999988875443457
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|+++.+.+
T Consensus 131 ~piilv~nK~Dl~~~~~v~~~~~~~~a~~-----------------~~~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 131 LPVILVGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CCEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEeechhccccCCcCHHHHHHHHHH-----------------hCCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 99999999999975 3455555554433 235899999999999999999998754
No 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.90 E-value=9.9e-23 Score=139.25 Aligned_cols=130 Identities=18% Similarity=0.249 Sum_probs=106.6
Q ss_pred CcccCCCCCcee---EEEEC-----------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161 8 AQHMPTLHPTSE---ELSMG-----------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD 73 (155)
Q Consensus 8 ~~~~pT~~~~~~---~~~~~-----------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~ 73 (155)
..+.||++.... .+.++ .+.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+.
T Consensus 38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~ 117 (195)
T 3bc1_A 38 SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWIS 117 (195)
T ss_dssp CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHH
T ss_pred cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHH
Confidence 467789887643 45554 3699999999999999999999999999999999999999999899998
Q ss_pred HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.+.......++|+++|+||+|+.+ .+..+++...... .++.++++||++|.|+++++++|.
T Consensus 118 ~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~ 180 (195)
T 3bc1_A 118 QLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK-----------------YGIPYFETSAANGTNISHAIEMLL 180 (195)
T ss_dssp HHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred HHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHH
Confidence 887655446799999999999875 4455555555443 235799999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 181 ~~~ 183 (195)
T 3bc1_A 181 DLI 183 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.90 E-value=3.1e-23 Score=140.33 Aligned_cols=131 Identities=19% Similarity=0.297 Sum_probs=107.1
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..++......+
T Consensus 35 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (181)
T 2fn4_A 35 VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD 114 (181)
T ss_dssp CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC
T ss_pred ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 34677888875 45566776 7899999999999999999999999999999999999999999999988865444567
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.++++||++|.|+++++++|.+.+
T Consensus 115 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 115 FPVVLVGNKADLESQRQVPRSEASAFGAS-----------------HHVAYFEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999875 3445555444333 346899999999999999999998754
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.90 E-value=1.3e-22 Score=137.01 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=103.7
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC---C
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD---A 80 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~---~ 80 (155)
..+.||.|.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... .
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 113 (177)
T 1wms_A 34 TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE 113 (177)
T ss_dssp C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSC
T ss_pred CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccc
Confidence 4677898875 56667777 799999999999999999999999999999999999999988888888775422 2
Q ss_pred CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++|+||+|+.+ ....+++...... ...+.+++|||++|.|++++|+++.+.+
T Consensus 114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 114 PESFPFVILGNKIDISERQVSTEEAQAWCRD----------------NGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp TTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------TTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCcccccccCHHHHHHHHHh----------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 25789999999999864 4556666655442 1345799999999999999999998754
No 48
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.90 E-value=5.4e-23 Score=139.83 Aligned_cols=130 Identities=18% Similarity=0.253 Sum_probs=107.8
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......++
T Consensus 45 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 124 (187)
T 2a9k_A 45 EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV 124 (187)
T ss_dssp CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4567888775 45566666 68999999999999999999999999999999999999999999999888765544579
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .....++...+.. .++.++++||++|.|++++|++|.+.+
T Consensus 125 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 125 PFLLVGNKSDLEDKRQVSVEEAKNRAEQ-----------------WNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEECccccccCccCHHHHHHHHHH-----------------cCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999999999865 4555666665544 346899999999999999999998754
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.90 E-value=4e-23 Score=138.59 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCCCceeEEEECC--EEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 12 PTLHPTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 12 pT~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
+|.......+.+++ +++.+|||||+..+.. .+..+++++|++++|+|++++.+++.+..|+..+.......++|+++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~il 114 (169)
T 3q85_A 35 NSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVIL 114 (169)
T ss_dssp ---CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEE
T ss_pred CcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEE
Confidence 33334466677776 7899999999998876 78888999999999999999999999999999888665555899999
Q ss_pred EEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 89 LGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+||+|+.+ .+..++....... .++.+++|||++|.|++++|+++.+.+
T Consensus 115 v~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 115 VGNKSDLARSREVSLEEGRHLAGT-----------------LSCKHIETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp EEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EeeCcchhhcccCCHHHHHHHHHH-----------------cCCcEEEecCccCCCHHHHHHHHHHHH
Confidence 999999874 4566666555544 346899999999999999999998764
No 50
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.90 E-value=8.7e-23 Score=137.91 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=106.5
Q ss_pred CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
...+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~ 119 (179)
T 1z0f_A 41 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NP 119 (179)
T ss_dssp CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CT
T ss_pred CCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CC
Confidence 34577888875 45566665 799999999999999999999999999999999999999998888988776432 24
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.+ ....+++.+.... .++.++++||++|.|++++|+++.+.+
T Consensus 120 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 120 NTVIILIGNKADLEAQRDVTYEEAKQFAEE-----------------NGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp TCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999965 3455566655544 346899999999999999999998764
No 51
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=142.68 Aligned_cols=135 Identities=16% Similarity=0.221 Sum_probs=103.4
Q ss_pred CCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++.+ ..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..
T Consensus 47 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~ 126 (192)
T 2il1_A 47 TDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDK 126 (192)
T ss_dssp CC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHH
T ss_pred hcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 34443 4567888864 56677776 7899999999999999999999999999999999999999988888877654
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
. ...+.|+++|+||+|+.+ .+..+++....... .++.+++|||++|.|++++|++|.+.+
T Consensus 127 ~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 127 Y-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------TGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp H-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred h-cCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 3 235789999999999865 34555555444321 246899999999999999999998754
No 52
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.89 E-value=1.4e-22 Score=137.98 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=105.7
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 115 (186)
T 2bme_A 37 DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQN 115 (186)
T ss_dssp TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888854 56667777 799999999999999999999999999999999999999999889988775432 257
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.+++|||++|.|++++|+++.+.+
T Consensus 116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 116 IVIILCGNKKDLDADREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999964 4455555554443 346899999999999999999998653
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.89 E-value=2.3e-23 Score=140.84 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=103.9
Q ss_pred CcccCCCCCc--eeEEEECC---EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-C
Q psy2161 8 AQHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-L 81 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~---~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~ 81 (155)
..+.||+|.. ...+.+++ +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+..... .
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~ 112 (178)
T 2hxs_A 33 KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEES 112 (178)
T ss_dssp HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHH
T ss_pred CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhccc
Confidence 3567898854 67777766 8999999999999999999999999999999999999999888888887754210 0
Q ss_pred CCCc-EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVP-ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~p-iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.| +++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|++|.+.+
T Consensus 113 ~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 113 ETQPLVALVGNKIDLEHMRTIKPEKHLRFCQE-----------------NGFSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp TCCCEEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEccccccccccCHHHHHHHHHH-----------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1344 899999999975 3455555554443 346899999999999999999998764
No 54
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.89 E-value=3.1e-23 Score=140.32 Aligned_cols=133 Identities=17% Similarity=0.296 Sum_probs=107.1
Q ss_pred CCCC-CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 3 KNDR-TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~-~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
.++. ...+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (181)
T 3tw8_B 30 ADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQ 109 (181)
T ss_dssp CSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3444 34677888864 56777777 8999999999999999999999999999999999999999999999988865
Q ss_pred CCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 78 DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .+.|+++|+||+|+.+ .....+....... .++.++++||++|.|++++++++.+.+
T Consensus 110 ~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 110 NC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ-----------------MGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp HC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33 4789999999999875 3444555444443 245799999999999999999998754
No 55
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=139.64 Aligned_cols=130 Identities=19% Similarity=0.274 Sum_probs=106.5
Q ss_pred CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
...+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~ 120 (196)
T 3tkl_A 42 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SE 120 (196)
T ss_dssp CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CT
T ss_pred CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CC
Confidence 35667888864 56777777 789999999999999999999999999999999999999999989988886433 34
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+++|+||+|+.+ .....+....... .++++++|||++|.|++++|++|.+.+
T Consensus 121 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIPFLETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp TCEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccccccccCHHHHHHHHHH-----------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999865 3444555554443 235799999999999999999998754
No 56
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=1.1e-22 Score=138.59 Aligned_cols=130 Identities=16% Similarity=0.284 Sum_probs=103.3
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.......+.
T Consensus 31 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~ 110 (189)
T 4dsu_A 31 DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDV 110 (189)
T ss_dssp CCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCC
T ss_pred CCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566777654 45566666 67889999999999999999999999999999999999999999999888765555689
Q ss_pred cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ ....++....... .+++++++||++|.|++++|+++.+.+
T Consensus 111 p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 111 PMVLVGNKCDLPSRTVDTKQAQDLARS-----------------YGIPFIETSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CEEEEEECTTSSSCSSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEECccCcccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999975 3455555544443 235799999999999999999998754
No 57
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.89 E-value=4.6e-23 Score=144.12 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=103.0
Q ss_pred CCcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH-HHHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~-~~~~l~~~~~~~~~~ 82 (155)
...+.||++... ..+.+++ +.+.+|||+|++.+...+..+++++|++++|||++++.++.. ...|+..+.... .
T Consensus 53 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~ 130 (214)
T 3q3j_B 53 PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--P 130 (214)
T ss_dssp CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--T
T ss_pred CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--C
Confidence 356789998863 3444444 899999999999999999999999999999999999999988 578888886542 5
Q ss_pred CCcEEEEEeCCCcCC--------------cCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCC-hHHH
Q psy2161 83 DVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQG-FGNG 146 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~ 146 (155)
+.|+++|+||+|+.+ .+..++....... .++ .+++|||++|.| ++++
T Consensus 131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~e~SA~~g~g~v~~l 193 (214)
T 3q3j_B 131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQ-----------------LGAEIYLEGSAFTSEKSIHSI 193 (214)
T ss_dssp TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCHHHHHHH
T ss_pred CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHH-----------------cCCCEEEEeccCCCcccHHHH
Confidence 789999999999964 2444444444433 345 899999999998 9999
Q ss_pred HHHHHhhc
Q psy2161 147 FRWLANYI 154 (155)
Q Consensus 147 ~~~l~~~i 154 (155)
|+++.+.+
T Consensus 194 f~~l~~~~ 201 (214)
T 3q3j_B 194 FRTASMLC 201 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998753
No 58
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.89 E-value=3.2e-23 Score=156.53 Aligned_cols=145 Identities=18% Similarity=0.302 Sum_probs=106.9
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC----------CCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~----------~~~~~~~~~~l~~~~~~~ 79 (155)
..||+|+....+.++++++++|||+|+++++..|..||++++++|||||+++ .++|.++..|+..+.+..
T Consensus 201 r~~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~ 280 (402)
T 1azs_C 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280 (402)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT
T ss_pred ccceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc
Confidence 3467888888889999999999999999999999999999999999999998 889999999999998776
Q ss_pred CCCCCcEEEEEeCCCcCCc-C--CHHHHHhhhcccCc-------cCCCcc----ccc--------ccc------cCccEE
Q psy2161 80 ALTDVPILILGNKIDIFDA-A--SEDEVRHFFGLYGL-------TTGKEF----TSR--------EIL------QMRPIE 131 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~-~--~~~~i~~~~~~~~~-------~~~~~~----~~~--------~~~------~~~~~~ 131 (155)
...+.|++||+||+|+.+. + ....+...+..+.. ++..+. ... ... ....+.
T Consensus 281 ~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~ 360 (402)
T 1azs_C 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCY 360 (402)
T ss_dssp TCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEE
T ss_pred cCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccE
Confidence 6678999999999998531 1 00011111111110 000000 000 011 113678
Q ss_pred EEEeeeccCCChHHHHHHHHhhc
Q psy2161 132 LFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 132 ~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++|||+++.||.++|.++.+.+
T Consensus 361 ~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 361 PHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEeecCcCHHHHHHHHHHHH
Confidence 89999999999999999987643
No 59
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.89 E-value=7.3e-23 Score=140.37 Aligned_cols=129 Identities=18% Similarity=0.243 Sum_probs=102.4
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 48 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~ 126 (191)
T 2a5j_A 48 PVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSN 126 (191)
T ss_dssp C-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 3567888865 55677776 799999999999999999999999999999999999999999989998886532 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|++|.+.+
T Consensus 127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 127 MVIMLIGNKSDLESRRDVKREEGEAFARE-----------------HGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcccCCccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999965 4455555554443 346899999999999999999998754
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.89 E-value=4.8e-23 Score=138.21 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=98.5
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 33 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 111 (170)
T 1z08_A 33 DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNE 111 (170)
T ss_dssp SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGG
T ss_pred cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677898876 45566655 789999999999999999999999999999999999999999888888765322 246
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++++++.+.+
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 112 ICLCIVGNKIDLEKERHVSIQEAESYAES-----------------VGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 89999999999975 4455555555443 246899999999999999999998754
No 61
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.89 E-value=2.2e-22 Score=134.84 Aligned_cols=130 Identities=17% Similarity=0.218 Sum_probs=106.1
Q ss_pred CCcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
...+.||.|.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+... ...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~ 110 (170)
T 1z0j_A 32 DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH-GPP 110 (170)
T ss_dssp CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCT
T ss_pred CCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCC
Confidence 34678888875 45566665 89999999999999999999999999999999999999999888898888653 335
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++++++.+.+
T Consensus 111 ~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 111 SIVVAIAGNKCDLTDVREVMERDAKDYADS-----------------IHAIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp TSEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCcEEEEEECCccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 789999999999865 3445555544433 346899999999999999999998865
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.89 E-value=5.8e-23 Score=137.09 Aligned_cols=130 Identities=17% Similarity=0.239 Sum_probs=105.9
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +.+++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.......+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 109 (167)
T 1kao_A 30 EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKV 109 (167)
T ss_dssp SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4567887764 56666766 67999999999999999999999999999999999999999999998888765555689
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .....+....... .+++++++||++|.|++++++++.+.+
T Consensus 110 piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 110 PVILVGNKVDLESEREVSSSEGRALAEE-----------------WGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCcccccccCCHHHHHHHHHH-----------------hCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 9999999999865 3445555444433 235799999999999999999998754
No 63
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=9.8e-23 Score=139.90 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=101.3
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.++..+. .|+..+... ..+
T Consensus 45 ~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 122 (194)
T 2atx_A 45 EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY--APN 122 (194)
T ss_dssp CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STT
T ss_pred CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence 4678898876 45666666 89999999999999999999999999999999999999998886 788777643 247
Q ss_pred CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161 84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 148 (155)
.|+++|+||+|+.+. +..++....... .+. .+++|||++|.|++++|+
T Consensus 123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~ 185 (194)
T 2atx_A 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKE-----------------IGACCYVECSALTQKGLKTVFD 185 (194)
T ss_dssp CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHH-----------------HTCSCEEECCTTTCTTHHHHHH
T ss_pred CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHH-----------------cCCcEEEEeeCCCCCCHHHHHH
Confidence 899999999998652 222233222221 223 789999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 186 ~l~~~i 191 (194)
T 2atx_A 186 EAIIAI 191 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 64
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.89 E-value=3.7e-23 Score=144.39 Aligned_cols=130 Identities=18% Similarity=0.278 Sum_probs=105.1
Q ss_pred CcccCCCCCc--eeEEEEC------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH
Q psy2161 8 AQHMPTLHPT--SEELSMG------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD 73 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~ 73 (155)
..+.||++.. ...+.++ ++++++|||||++.+...+..+++++|++++|+|++++.++..+..|+.
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~ 131 (217)
T 2f7s_A 52 PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 131 (217)
T ss_dssp CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence 4567888764 3445554 5789999999999999999999999999999999999999999889988
Q ss_pred HHHhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 74 SLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 74 ~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
.+.......++|+++|+||+|+.+ .+...++...... .++.+++|||++|.|++++|++|.
T Consensus 132 ~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~ 194 (217)
T 2f7s_A 132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK-----------------YGIPYFETSAATGQNVEKAVETLL 194 (217)
T ss_dssp TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH-----------------CCCcEEEEECCCCCCHHHHHHHHH
Confidence 886544446799999999999975 3455555555443 245799999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 195 ~~i 197 (217)
T 2f7s_A 195 DLI 197 (217)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 65
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=2e-22 Score=139.65 Aligned_cols=129 Identities=19% Similarity=0.310 Sum_probs=105.9
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~ 113 (206)
T 2bcg_Y 35 NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TST 113 (206)
T ss_dssp TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTT
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677888875 45667776 699999999999999999999999999999999999999999999998886433 347
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..++....... .++.++++||++|.|++++|+++.+.+
T Consensus 114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADA-----------------NKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp CEEEEEEECTTCTTTCCSCHHHHHHHHHH-----------------TTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999975 3455555554433 245799999999999999999998754
No 66
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=3.9e-22 Score=139.37 Aligned_cols=130 Identities=16% Similarity=0.180 Sum_probs=98.7
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
....||+|.. ...+.+++ +++.+|||+|+.. ++.+...|++.++++++|||++++.+|+.+..|+..+.......
T Consensus 65 ~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~ 144 (211)
T 2g3y_A 65 DSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE 144 (211)
T ss_dssp CCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGT
T ss_pred CCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC
Confidence 4445666664 46677777 6789999999887 56678888999999999999999999999988888776433335
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+++|+||+|+.+ .+..++....... .++.+++|||++|.|++++|+++.+.+
T Consensus 145 ~~piilVgNK~DL~~~r~v~~~e~~~~a~~-----------------~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 145 DIPIILVGNKSDLVRCREVSVSEGRACAVV-----------------FDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp TSCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcEEEEEEChHHhcCceEeHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999964 3444443332222 346899999999999999999998754
No 67
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.4e-23 Score=142.63 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=102.7
Q ss_pred CCcccCCCCCce-eEEEE--CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 7 TAQHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 7 ~~~~~pT~~~~~-~~~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
...+.||.+... ..+.+ .++.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.......+
T Consensus 50 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 129 (201)
T 3oes_A 50 SEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129 (201)
T ss_dssp CSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----C
T ss_pred CCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 346678888653 33333 348999999999999999999999999999999999999999999999999986655567
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.++++||++|.|++++|++|.+.+
T Consensus 130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 130 VPVVLVGNKADLSPEREVQAVEGKKLAES-----------------WGATFMESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp CCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECccCccccccCHHHHHHHHHH-----------------hCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999865 4455555444443 345899999999999999999998754
No 68
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.89 E-value=8e-23 Score=141.33 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=100.2
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~ 130 (200)
T 2o52_A 52 QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPN 130 (200)
T ss_dssp --------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTT
T ss_pred ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888865 56667777 899999999999999999999999999999999999999999999988876433 257
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.+++|||++|.|++++|++|.+.+
T Consensus 131 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 131 IVVILCGNKKDLDPEREVTFLEASRFAQE-----------------NELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999864 3455555554443 346899999999999999999998754
No 69
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=5.4e-23 Score=141.05 Aligned_cols=129 Identities=12% Similarity=0.229 Sum_probs=104.7
Q ss_pred CcccCCCCCc--eeEEEEC--CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.. ...+..+ ++.+++|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+... ...+
T Consensus 50 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~ 128 (191)
T 3dz8_A 50 PAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY-SWDN 128 (191)
T ss_dssp CCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred cccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 5667888875 3444444 489999999999999999999999999999999999999999998998888653 2357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .....+....... .++.+++|||++|.|++++|+++.+.+
T Consensus 129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQ-----------------LGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999865 3455555554443 345899999999999999999998754
No 70
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.89 E-value=2.4e-22 Score=137.54 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=104.8
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.. ...+..++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 49 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~ 127 (189)
T 2gf9_A 49 PAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDN 127 (189)
T ss_dssp CSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677888875 35555554 799999999999999999999999999999999999999998888988876432 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..+++...... .++.++++||++|.|+++++++|.+.+
T Consensus 128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 128 AQVILVGNKCDLEDERVVPAEDGRRLADD-----------------LGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccCCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999865 3445555554443 245899999999999999999998754
No 71
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.89 E-value=4.1e-22 Score=136.66 Aligned_cols=129 Identities=16% Similarity=0.252 Sum_probs=105.1
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.. ...+.+++ +++.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~ 130 (193)
T 2oil_A 52 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EAT 130 (193)
T ss_dssp SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTT
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 3567888865 45555654 899999999999999999999999999999999999999988889998886432 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+...+....... .++.+++|||++|.|++++|++|.+.+
T Consensus 131 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 131 IVVMLVGNKSDLSQAREVPTEEARMFAEN-----------------NGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEEECCCcccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999975 3455555554433 346899999999999999999998753
No 72
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.88 E-value=1.3e-22 Score=135.73 Aligned_cols=128 Identities=19% Similarity=0.339 Sum_probs=105.5
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+.... .+
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~ 109 (168)
T 1z2a_A 32 KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GD 109 (168)
T ss_dssp CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CS
T ss_pred CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CC
Confidence 4678888875 55666665 799999999999999999999999999999999999999998888988886543 57
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ ....+++...... .++.++++||++|.|++++++++.+.+
T Consensus 110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKR-----------------LKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp CCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEECcccCcccccCHHHHHHHHHH-----------------cCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999865 4455565555443 345899999999999999999998753
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.88 E-value=3.7e-22 Score=137.31 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=93.1
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEV 104 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i 104 (155)
..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... +.|+++|+||+|+.. ....+++
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~~~~~~~~~~ 169 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKNKFQVDILEV 169 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC-CCSCHHHH
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcccccCCHHHH
Confidence 789999999999999999999999999999999999999999889998886543 389999999999433 4566677
Q ss_pred HhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 105 RHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.+.. .++.++++||++|.|+++++++|.+.+
T Consensus 170 ~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 170 QKYAQD-----------------NNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHHH-----------------TTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 666654 346899999999999999999998754
No 74
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.3e-22 Score=142.47 Aligned_cols=129 Identities=20% Similarity=0.276 Sum_probs=99.0
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++|+|||++++.+++.+..|+..+.... ..+
T Consensus 40 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~ 118 (223)
T 3cpj_B 40 MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDN 118 (223)
T ss_dssp C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--
T ss_pred CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCC
Confidence 4567888865 56677777 799999999999999999999999999999999999999999999998886432 357
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.++++||++|.|++++|++|.+.+
T Consensus 119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQE-----------------NQLLFTETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp CEEEEEECCGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999865 3455555554443 346899999999999999999998754
No 75
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.88 E-value=1.4e-22 Score=139.13 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=102.9
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+... ..+
T Consensus 50 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 127 (194)
T 3reg_A 50 TAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDT 127 (194)
T ss_dssp SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTT
T ss_pred CccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence 4678998876 44455666 7789999999999999999999999999999999999999886 6677766533 357
Q ss_pred CcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEE-EEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIE-LFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+..+++...... .++. +++|||++|.|++++|+++.+.+
T Consensus 128 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK-----------------LGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp SEEEEEEECGGGCCTTTTCCCHHHHHHHHHH-----------------HTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhccCCCCcccHHHHHHHHHh-----------------cCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 89999999999864 3455565555444 2234 99999999999999999998754
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.88 E-value=3e-22 Score=135.23 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=105.5
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++.....|+..+.... ..+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~ 119 (179)
T 2y8e_A 41 NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSD 119 (179)
T ss_dssp SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTS
T ss_pred CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4567888864 56666776 799999999999999999999999999999999999999999889988876432 247
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .....+....... .++.++++||++|.|++++++++.+.+
T Consensus 120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKE-----------------LNVMFIETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp SEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred CcEEEEEECCcccccCcCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999865 3445555544433 346899999999999999999998865
No 77
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.88 E-value=4.5e-22 Score=138.59 Aligned_cols=152 Identities=19% Similarity=0.183 Sum_probs=100.1
Q ss_pred CCCCCCcccCCCCCceeEEEEC---CEEEEEEEcCCChhhHH-hHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHh
Q psy2161 3 KNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLA 77 (155)
Q Consensus 3 ~~~~~~~~~pT~~~~~~~~~~~---~~~~~~~Dt~G~~~~~~-~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~ 77 (155)
.++.+....||.+.....+.++ ++++++|||||+..+.. ++..|++++|++++|+|+++.. ++.....++..++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~ 107 (214)
T 2fh5_B 28 LTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLI 107 (214)
T ss_dssp HHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred hCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHh
Confidence 3445555556666766668777 58999999999999988 8999999999999999998743 35555555554433
Q ss_pred C--CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc----------Ccc------------CCCcccccccccCccEEEE
Q psy2161 78 D--DALTDVPILILGNKIDIFDAASEDEVRHFFGLY----------GLT------------TGKEFTSREILQMRPIELF 133 (155)
Q Consensus 78 ~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~----------~~~------------~~~~~~~~~~~~~~~~~~~ 133 (155)
. ....++|+++|+||+|+.+......+.+.+... ... ...+.....+.....+.++
T Consensus 108 ~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2fh5_B 108 DSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFL 187 (214)
T ss_dssp HHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEE
T ss_pred hhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEE
Confidence 2 123468999999999997654444433332210 000 0000000000111278999
Q ss_pred EeeeccC------CChHHHHHHHHhhc
Q psy2161 134 MCSVLKR------QGFGNGFRWLANYI 154 (155)
Q Consensus 134 ~~Sa~~~------~~i~~~~~~l~~~i 154 (155)
+|||++| .|++++|+||.+.+
T Consensus 188 e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 188 ECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ECBCC-------CCBCHHHHHHHHHHC
T ss_pred EeeccCCCccccccChHHHHHHHHHhC
Confidence 9999999 99999999998764
No 78
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=2e-22 Score=138.67 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=104.6
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+.+++ +.+.+|||||+.. ...+..+++++|++++|||++++.+++.+..|+..+.......+.
T Consensus 55 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 133 (196)
T 2atv_A 55 WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNV 133 (196)
T ss_dssp SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCC
T ss_pred cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 4677888875 34466665 7899999999988 788999999999999999999999999998888887654444578
Q ss_pred cEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCC-ChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQ-GFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .+...+....... .++.+++|||++|. |++++|++|.+.+
T Consensus 134 piilv~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 134 TLILVGNKADLDHSRQVSTEEGEKLATE-----------------LACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp CEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred cEEEEEECcccccccccCHHHHHHHHHH-----------------hCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 9999999999975 3455555554433 24689999999999 9999999998754
No 79
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=140.13 Aligned_cols=129 Identities=20% Similarity=0.232 Sum_probs=94.8
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.++..+..|+..+... ...+
T Consensus 55 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~ 133 (199)
T 2p5s_A 55 ENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHET 133 (199)
T ss_dssp ----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---
T ss_pred ccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCC
Confidence 4677888865 56677776 78999999999999999999999999999999999999999888888877542 2247
Q ss_pred CcEEEEEeCCCcCC--------cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--------AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+ .+...+....... .++.+++|||++|.|++++|++|.+.+
T Consensus 134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT-----------------YGALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH-----------------HTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEECcccccccccccccccCHHHHHHHHHH-----------------cCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 89999999999852 2333343333322 346899999999999999999998765
No 80
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.88 E-value=2.4e-22 Score=138.68 Aligned_cols=128 Identities=14% Similarity=0.216 Sum_probs=98.0
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|||++++.++..+. .|+..+.... .+
T Consensus 47 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~ 124 (201)
T 2q3h_A 47 TEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PK 124 (201)
T ss_dssp ----CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred CCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence 4677888865 45566776 68889999999999999999999999999999999999998886 7887776432 47
Q ss_pred CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161 84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 148 (155)
.|+++|+||+|+.+. +..++....... .+. .+++|||++|.|++++|+
T Consensus 125 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~ 187 (201)
T 2q3h_A 125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEE-----------------IKAASYIECSALTQKNLKEVFD 187 (201)
T ss_dssp SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHH
T ss_pred CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHh-----------------cCCcEEEEEecCCCCCHHHHHH
Confidence 899999999998642 222233322222 233 799999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 188 ~l~~~~ 193 (201)
T 2q3h_A 188 AAIVAG 193 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 81
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=2.9e-22 Score=135.67 Aligned_cols=131 Identities=22% Similarity=0.323 Sum_probs=92.0
Q ss_pred CcccCCCCCc--eeEEEEC---CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC---
Q psy2161 8 AQHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD--- 79 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~--- 79 (155)
..+.||.+.. ...+.++ .+.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+....
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 114 (182)
T 1ky3_A 35 QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN 114 (182)
T ss_dssp TTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence 4677888865 4555555 2799999999999999999999999999999999999999999888988776432
Q ss_pred CCCCCcEEEEEeCCCcCC---cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+.|+++|+||+|+.+ .+...++...... ...+.+++|||++|.|++++|+++.+.+
T Consensus 115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKS----------------LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----------------TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEECCccccccccCCHHHHHHHHHh----------------cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 235789999999999854 2345555554431 1346799999999999999999998753
No 82
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.88 E-value=8.6e-23 Score=136.87 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=99.0
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +++.+|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... ..+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~ 108 (170)
T 1g16_A 30 PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDE 108 (170)
T ss_dssp C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTT
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677888865 45666665 799999999999999999999999999999999999989988889988886533 247
Q ss_pred CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ ....++....... .+++++++||++|.|++++++++.+.+
T Consensus 109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 109 AQLLLVGNKSDMETRVVTADQGEALAKE-----------------LGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CEEEEEEECTTCTTCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CcEEEEEECccCCcCccCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999954 3455555544433 235799999999999999999998754
No 83
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=139.13 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=100.9
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC--CC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD--AL 81 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~--~~ 81 (155)
...+.||++.. ...+.+++ +.+++|||||++.++.. ..+++++|++++|||++++.+++.+..|+..+.... ..
T Consensus 47 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~ 125 (187)
T 3c5c_A 47 ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ 125 (187)
T ss_dssp CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccC
Confidence 35678999875 34455655 78999999999988774 678999999999999999999999999998886431 12
Q ss_pred CCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeee-ccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSV-LKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+.+ .++.+++.+.... .++.+++||| ++|.|++++|+++.+.+
T Consensus 126 ~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 126 RSIPALLLGNKLDMAQYRQVTKAEGVALAGR-----------------FGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CCCCEEEEEECGGGGGGCSSCHHHHHHHHHH-----------------HTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECcchhhcCccCHHHHHHHHHH-----------------cCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 4789999999999965 4555666555544 3458999999 89999999999998754
No 84
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.88 E-value=1.1e-21 Score=134.07 Aligned_cols=130 Identities=16% Similarity=0.286 Sum_probs=94.6
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+..++ +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......++
T Consensus 48 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 127 (190)
T 3con_A 48 DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV 127 (190)
T ss_dssp SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4566777765 45666666 67999999999999999999999999999999999999998888888877654434578
Q ss_pred cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ ....+++.+.... .++.+++|||++|.|+++++++|.+.+
T Consensus 128 p~ilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 128 PMVLVGNKCDLPTRTVDTKQAHELAKS-----------------YGIPFIETSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEEECCcCCcccCCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999875 4455555555443 235799999999999999999998754
No 85
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.87 E-value=1.3e-21 Score=135.23 Aligned_cols=128 Identities=16% Similarity=0.265 Sum_probs=99.2
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~ 82 (155)
...+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+... ..
T Consensus 51 ~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~ 128 (201)
T 2gco_A 51 PEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CP 128 (201)
T ss_dssp CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--ST
T ss_pred CcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CC
Confidence 34677898876 45567776 6999999999999999999999999999999999999999888 5677666542 24
Q ss_pred CCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHH
Q psy2161 83 DVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 147 (155)
+.|+++|+||+|+.+.. ..++....... .+. .+++|||++|.|+++++
T Consensus 129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~~l~ 191 (201)
T 2gco_A 129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANR-----------------ISAFGYLECSAKTKEGVREVF 191 (201)
T ss_dssp TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHh-----------------CCCcEEEEeeCCCCCCHHHHH
Confidence 78999999999986531 11122221111 223 79999999999999999
Q ss_pred HHHHhh
Q psy2161 148 RWLANY 153 (155)
Q Consensus 148 ~~l~~~ 153 (155)
+++.+.
T Consensus 192 ~~i~~~ 197 (201)
T 2gco_A 192 EMATRA 197 (201)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999875
No 86
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=3.1e-22 Score=138.49 Aligned_cols=131 Identities=18% Similarity=0.300 Sum_probs=104.3
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC---
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA--- 80 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~--- 80 (155)
..+.||.+.. ...+.+++ +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+.....
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 114 (207)
T 1vg8_A 35 NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114 (207)
T ss_dssp SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence 4677888865 44555555 7999999999999999999999999999999999999999888888887764321
Q ss_pred CCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..+.|+++|+||+|+.+ ....+++...... ...+.++++||++|.|++++|++|.+.+
T Consensus 115 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYS----------------KNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp GGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------TTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------cCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 24689999999999975 3455555554431 1346799999999999999999998754
No 87
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.87 E-value=2.7e-22 Score=140.06 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=105.6
Q ss_pred CCCCCC-CcccCCCCCceeEEEE--C-C--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPTSEELSM--G-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~~~~~~~--~-~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
|.++.+ ..+.||.+.......+ . + +.+.+|||||+..+...+..+++++|++++|+|++++.++..+..|+..+
T Consensus 31 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (218)
T 4djt_A 31 VLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF 110 (218)
T ss_dssp CTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 455553 4667899886544443 2 2 88999999999999999999999999999999999999998888888887
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.... ..++|+++|+||+|+.+ .+........... .++.+++|||++|.|++++|++|.+.
T Consensus 111 ~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~g~gv~~l~~~l~~~ 172 (218)
T 4djt_A 111 QAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG-----------------KNYEYFEISAKTAHNFGLPFLHLARI 172 (218)
T ss_dssp HHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT-----------------CCCEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred HHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH-----------------cCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 6432 23589999999999875 3444555444443 45689999999999999999999875
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 173 ~ 173 (218)
T 4djt_A 173 F 173 (218)
T ss_dssp H
T ss_pred H
Confidence 4
No 88
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=5.1e-22 Score=137.98 Aligned_cols=129 Identities=17% Similarity=0.258 Sum_probs=104.9
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+.+++ +.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... ..+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~ 125 (213)
T 3cph_A 47 PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDE 125 (213)
T ss_dssp CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTC
T ss_pred cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 4677888865 56677777 789999999999999999999999999999999999989988888988876533 246
Q ss_pred CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.. .....+....... .++++++|||++|.|++++|++|.+.+
T Consensus 126 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 126 AQLLLVGNKSDMETRVVTADQGEALAKE-----------------LGIPFIESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp SEEEEEEECTTCSSCCSCHHHHHHHHHH-----------------HTCCEEECBTTTTBSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCcccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999954 3444555444433 235799999999999999999998754
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.87 E-value=9.6e-22 Score=130.90 Aligned_cols=130 Identities=16% Similarity=0.278 Sum_probs=104.6
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
..+.||.+.. ...+..++ +.+.+|||||+..+...+..+++.+|++++|+|++++.++..+..|+..+.......+.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 109 (166)
T 2ce2_X 30 DECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV 109 (166)
T ss_dssp SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred cccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4566777765 45566665 77999999999999999999999999999999999999998888898887654444578
Q ss_pred cEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+ .....++...... .+++++++||++|.|++++++++.+.+
T Consensus 110 p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 110 PMVLVGNKSDLAARTVESRQAQDLARS-----------------YGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CEEEEEECTTCSCCCSCHHHHHHHHHH-----------------HTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred cEEEEEEchhhhhcccCHHHHHHHHHH-----------------cCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999876 3444555554433 235799999999999999999998754
No 90
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=2.2e-22 Score=140.53 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=83.3
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.+++.+. .|+..+.... .+
T Consensus 61 ~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~ 138 (214)
T 2j1l_A 61 ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KK 138 (214)
T ss_dssp ---CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CC
Confidence 4567888765 45566666 68999999999999999999999999999999999999998886 6877775432 47
Q ss_pred CcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHH
Q psy2161 84 VPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~ 148 (155)
+|+++|+||+|+.+.. ...+....... .+. .+++|||++|.|++++|+
T Consensus 139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~SA~~g~gi~el~~ 201 (214)
T 2j1l_A 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARS-----------------VGAVAYLECSARLHDNVHAVFQ 201 (214)
T ss_dssp CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECBTTTTBSHHHHHH
T ss_pred CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHh-----------------cCCCEEEEecCCCCCCHHHHHH
Confidence 8999999999986532 12222222211 233 899999999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 202 ~l~~~~ 207 (214)
T 2j1l_A 202 EAAEVA 207 (214)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 91
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.87 E-value=8.4e-22 Score=133.90 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=99.4
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~ 82 (155)
...+.||.+.. ...+.+++ +++++|||||++.+...+..+++++|++++|+|++++.++.... .|+..+.... .
T Consensus 31 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~ 108 (186)
T 1mh1_A 31 PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--P 108 (186)
T ss_dssp CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--T
T ss_pred CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--C
Confidence 35677888875 44566666 78889999999999999999999999999999999999998886 6777775432 3
Q ss_pred CCcEEEEEeCCCcCCcC--------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHH
Q psy2161 83 DVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~--------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~ 147 (155)
+.|+++|+||+|+.+.. ..++....... .+ ..+++|||++|.|++++|
T Consensus 109 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----------------IGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh-----------------cCCcEEEEecCCCccCHHHHH
Confidence 78999999999986421 11222221111 23 389999999999999999
Q ss_pred HHHHhhc
Q psy2161 148 RWLANYI 154 (155)
Q Consensus 148 ~~l~~~i 154 (155)
+++.+.+
T Consensus 172 ~~l~~~~ 178 (186)
T 1mh1_A 172 DEAIRAV 178 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 92
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=2.2e-22 Score=140.02 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=100.1
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~ 82 (155)
...+.||++.. ...+.+++ +.+++|||||++.+...+..+++++|++++|||++++.+++.+. .|+..+.... .
T Consensus 35 ~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~ 112 (212)
T 2j0v_A 35 PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--P 112 (212)
T ss_dssp CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--T
T ss_pred CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--C
Confidence 35678999876 44556665 79999999999999999999999999999999999999998886 7887775432 3
Q ss_pred CCcEEEEEeCCCcCCc----------CCHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHHH
Q psy2161 83 DVPILILGNKIDIFDA----------ASEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~----------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+.|+++|+||+|+.+. +...+....... .+ ..+++|||++|.|++++|+++.
T Consensus 113 ~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQ-----------------IGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHH-----------------cCCceEEEccCCCCCCHHHHHHHHH
Confidence 7899999999998652 133333333322 22 3799999999999999999998
Q ss_pred hhc
Q psy2161 152 NYI 154 (155)
Q Consensus 152 ~~i 154 (155)
+.+
T Consensus 176 ~~~ 178 (212)
T 2j0v_A 176 KVV 178 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 93
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.87 E-value=1.7e-22 Score=141.54 Aligned_cols=129 Identities=19% Similarity=0.337 Sum_probs=102.4
Q ss_pred CCcccCCCCCcee--EEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~~~--~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
...+.||.|.+.. .+..++ +.+++|||||++.+...+..+++++|++++|+|++++.++..+..|+..+.... .
T Consensus 41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~ 118 (221)
T 3gj0_A 41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--E 118 (221)
T ss_dssp TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--T
T ss_pred CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--C
Confidence 3467899987644 344444 899999999999999999999999999999999999999999999998887543 4
Q ss_pred CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.+.....+..... ...++.+++|||++|.|++++|++|.+.+
T Consensus 119 ~~p~ilv~nK~Dl~~~~~~~~~~~~~-----------------~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 119 NIPIVLCGNKVDIKDRKVKAKSIVFH-----------------RKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp TCCEEEEEECTTSSSCSSCGGGCCHH-----------------HHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred CCCEEEEEECCccccccccHHHHHHH-----------------HHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 78999999999997632222111111 22356899999999999999999998754
No 94
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=6.5e-23 Score=153.00 Aligned_cols=133 Identities=23% Similarity=0.364 Sum_probs=98.2
Q ss_pred CCCCCceeEEEEC------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC----------CCCchHHHHHHHHHH
Q psy2161 12 PTLHPTSEELSMG------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDSL 75 (155)
Q Consensus 12 pT~~~~~~~~~~~------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~----------~~~~~~~~~~~l~~~ 75 (155)
+|.|+....+.++ ++++++|||+|+++++..|.+||++++++|+|||++ +.+++.+...|+..+
T Consensus 163 ~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i 242 (354)
T 2xtz_A 163 RTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV 242 (354)
T ss_dssp CCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH
T ss_pred cccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH
Confidence 4555555555553 489999999999999999999999999999999998 788999999999999
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc----CC-------------------HHHHHhhhcccCccCCCcccccccc-------
Q psy2161 76 LADDALTDVPILILGNKIDIFDA----AS-------------------EDEVRHFFGLYGLTTGKEFTSREIL------- 125 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~----~~-------------------~~~i~~~~~~~~~~~~~~~~~~~~~------- 125 (155)
.+.....+.|++||+||+|+.+. ++ .++...++.. .+..+
T Consensus 243 ~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~----------~f~~l~~~~~~~ 312 (354)
T 2xtz_A 243 LKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKK----------KFEELYYQNTAP 312 (354)
T ss_dssp HTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHH----------HHHHHHHHTCCT
T ss_pred HhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHH----------HHHHhhhccccc
Confidence 87655578999999999998541 11 1111111110 00000
Q ss_pred --cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 126 --QMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 126 --~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....+.+++|||+++.||.++|+++.+.+
T Consensus 313 ~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 313 DRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp TTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 02356789999999999999999988653
No 95
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.87 E-value=3.6e-22 Score=136.14 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=99.6
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+ ..|+..+... ..+
T Consensus 34 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~ 111 (184)
T 1m7b_A 34 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPN 111 (184)
T ss_dssp SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTT
T ss_pred CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCC
Confidence 4578898875 34555554 8999999999999999999999999999999999999999888 6787777543 247
Q ss_pred CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHH
Q psy2161 84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFR 148 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~ 148 (155)
.|+++|+||+|+.+. ++.++....... . ..+.+++|||+ +|.|++++|+
T Consensus 112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~--~~~~~~e~Sa~~~~~gi~~l~~ 175 (184)
T 1m7b_A 112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ--------------I--GAATYIECSALQSENSVRDIFH 175 (184)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH--------------H--TCSEEEECBTTTBHHHHHHHHH
T ss_pred CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHH--------------c--CCcEEEEeeecCCCcCHHHHHH
Confidence 899999999998641 333333333322 1 12589999999 6899999999
Q ss_pred HHHhh
Q psy2161 149 WLANY 153 (155)
Q Consensus 149 ~l~~~ 153 (155)
++.+.
T Consensus 176 ~i~~~ 180 (184)
T 1m7b_A 176 VATLA 180 (184)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 96
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=7.7e-22 Score=132.31 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=100.7
Q ss_pred CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CCCC
Q psy2161 8 AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-ALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~~~ 83 (155)
..+.||.+... ..+..++ +.+++|||||+..+...+..+++.+|++++|+|++++.+++....|+..+.... ...+
T Consensus 30 ~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 109 (172)
T 2erx_A 30 ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVES 109 (172)
T ss_dssp SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---C
T ss_pred CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 46778888753 3444554 789999999999999999999999999999999999888888888877665421 2347
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .+...+....... .++.++++||++|.|++++++++.+.+
T Consensus 110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 110 IPIMLVGNKCDESPSREVQSSEAEALART-----------------WKCAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp CCEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred CCEEEEEEccccccccccCHHHHHHHHHH-----------------hCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence 89999999999865 3444444433332 245899999999999999999998765
No 97
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.87 E-value=9.2e-22 Score=136.45 Aligned_cols=129 Identities=16% Similarity=0.272 Sum_probs=97.8
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++... .|+..+.... .+
T Consensus 57 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~ 134 (204)
T 4gzl_A 57 GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PN 134 (204)
T ss_dssp C-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SS
T ss_pred CCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence 4677888764 44555555 77889999999999999999999999999999999999998886 6777775433 57
Q ss_pred CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161 84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW 149 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 149 (155)
+|+++|+||+|+.+. +...+....... ....++++|||++|.|++++|++
T Consensus 135 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~SA~~g~gi~~l~~~ 198 (204)
T 4gzl_A 135 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE----------------IGAVKYLECSALTQRGLKTVFDE 198 (204)
T ss_dssp CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH----------------TTCSEEEECCTTTCTTHHHHHHH
T ss_pred CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh----------------cCCcEEEEeeCCCCCCHHHHHHH
Confidence 899999999998652 122222222211 11246999999999999999999
Q ss_pred HHhhc
Q psy2161 150 LANYI 154 (155)
Q Consensus 150 l~~~i 154 (155)
+.+.+
T Consensus 199 l~~~~ 203 (204)
T 4gzl_A 199 AIRAV 203 (204)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98754
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=1.9e-23 Score=144.30 Aligned_cols=135 Identities=19% Similarity=0.279 Sum_probs=96.8
Q ss_pred CCCCCC-CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
|.++.+ ..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.+++.+..|+..+.
T Consensus 53 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~ 132 (199)
T 3l0i_B 53 FADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEID 132 (199)
T ss_dssp SBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 444443 4556777754 56777777 789999999999999999999999999999999999999999999998885
Q ss_pred hCCCCCCCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ...++|+++|+||+|+.+. +...+....... .++.+++|||++|.|++++|++|.+.+
T Consensus 133 ~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 133 RY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS-----------------LGIPFLETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp SC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT-----------------TTCCBCCCCC---HHHHHHHHHHTTTT
T ss_pred Hh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHH-----------------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 43 3357899999999998642 222222222221 345789999999999999999998765
No 99
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.3e-21 Score=134.47 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=101.3
Q ss_pred CcccCCCCCce-eEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CCC
Q psy2161 8 AQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LTD 83 (155)
Q Consensus 8 ~~~~pT~~~~~-~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~~ 83 (155)
..+.||.+... ..+..++ +.+.+|||||+..+...+..+++++|++++|+|++++.+++.+..|+..+..... ..+
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 114 (199)
T 2gf0_A 35 DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED 114 (199)
T ss_dssp CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGG
T ss_pred CcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45678888653 3344554 7899999999999999999999999999999999998888887777765543221 246
Q ss_pred CcEEEEEeCCCcCC-cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++|+||+|+.+ .....+....... .++.++++||++|.|++++++++.+.+
T Consensus 115 ~piilv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 115 IPVMLVGNKCDETQREVDTREAQAVAQE-----------------WKCAFMETSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp SCEEEEEECTTCSSCSSCHHHHHHHHHH-----------------HTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred CCEEEEEECccCCccccCHHHHHHHHHH-----------------hCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 89999999999975 3444444443333 245899999999999999999998764
No 100
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.86 E-value=7.7e-22 Score=137.13 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=99.4
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|||++++.+++.+ ..|+..+.... .+
T Consensus 55 ~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~ 132 (205)
T 1gwn_A 55 ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PN 132 (205)
T ss_dssp SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TT
T ss_pred CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CC
Confidence 4568898875 34555554 8999999999999999999999999999999999999999888 67877775432 47
Q ss_pred CcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec-cCCChHHHHH
Q psy2161 84 VPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL-KRQGFGNGFR 148 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~ 148 (155)
.|+++|+||+|+.+. ++.++....... . ..+.+++|||+ +|.|++++|+
T Consensus 133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------~--~~~~~~e~SAk~~~~gv~~lf~ 196 (205)
T 1gwn_A 133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ--------------I--GAATYIECSALQSENSVRDIFH 196 (205)
T ss_dssp CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH--------------H--TCSEEEECCTTTCHHHHHHHHH
T ss_pred CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHH--------------c--CCCEEEEeeeccCCcCHHHHHH
Confidence 899999999998631 233333333222 1 12589999999 6899999999
Q ss_pred HHHhh
Q psy2161 149 WLANY 153 (155)
Q Consensus 149 ~l~~~ 153 (155)
++.+.
T Consensus 197 ~l~~~ 201 (205)
T 1gwn_A 197 VATLA 201 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=3.1e-21 Score=133.90 Aligned_cols=142 Identities=13% Similarity=0.181 Sum_probs=93.7
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES-KYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~~~ 83 (155)
..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++|+|++++.++..+ ..|+..+... ..+
T Consensus 52 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~ 129 (207)
T 2fv8_A 52 EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPN 129 (207)
T ss_dssp -------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STT
T ss_pred CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCC
Confidence 4567888876 35566776 7899999999999999999999999999999999999899888 5677766542 247
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+.....+....+........... ......+. .+++|||++|.|++++++++.+.+
T Consensus 130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGR---AMAVRIQAYDYLECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHH---HHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHH---HHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 899999999998653111111111110000000000 00011122 799999999999999999998753
No 102
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.86 E-value=2.6e-22 Score=136.08 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=87.4
Q ss_pred CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+..++ +.+++|||||++.+...+..+++++|++++|+|++++.+++.+. .|+..+.... .+
T Consensus 35 ~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~ 112 (182)
T 3bwd_D 35 TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PG 112 (182)
T ss_dssp ----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TT
T ss_pred CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CC
Confidence 4667888764 23334444 77889999999999999999999999999999999999998886 6877775432 37
Q ss_pred CcEEEEEeCCCcCCcC------------CHHHHHhhhcccCccCCCcccccccccCcc-EEEEEeeeccCCChHHHHHHH
Q psy2161 84 VPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTSREILQMRP-IELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~l 150 (155)
.|+++|+||+|+.+.. ...+....... .+ ..+++|||++|.|++++|+++
T Consensus 113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~~~l 175 (182)
T 3bwd_D 113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKL-----------------IGAPAYIECSSKSQENVKGVFDAA 175 (182)
T ss_dssp CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHH-----------------HTCSEEEECCTTTCTTHHHHHHHH
T ss_pred CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHH-----------------cCCCEEEEEECCCCCCHHHHHHHH
Confidence 8999999999986521 22333332222 23 379999999999999999999
Q ss_pred Hhhc
Q psy2161 151 ANYI 154 (155)
Q Consensus 151 ~~~i 154 (155)
.+.+
T Consensus 176 ~~~i 179 (182)
T 3bwd_D 176 IRVV 179 (182)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.85 E-value=5.2e-21 Score=131.60 Aligned_cols=130 Identities=16% Similarity=0.179 Sum_probs=94.3
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~ 82 (155)
....||.|.. ...+.+++ +++.+|||+|+.. ++.++..|++.+|++++|||++++.+|+.+..|+..+.......
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~ 113 (192)
T 2cjw_A 34 DSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTE 113 (192)
T ss_dssp ----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC
Confidence 3334556654 46677777 6788999999876 55677888999999999999999999999888887775433335
Q ss_pred CCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+.|+++|+||+|+.. .+...+....... .++.+++|||++|.|++++|+++.+.+
T Consensus 114 ~~piilV~NK~Dl~~~r~v~~~~~~~~a~~-----------------~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 114 DIPIILVGNKSDLVRXREVSVSEGRAXAVV-----------------FDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCeEEEEEechhhhccccccHHHHHHHHHH-----------------hCCceEEeccccCCCHHHHHHHHHHHH
Confidence 789999999999864 3343333322222 235799999999999999999998754
No 104
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.85 E-value=3.9e-21 Score=132.42 Aligned_cols=108 Identities=17% Similarity=0.221 Sum_probs=84.3
Q ss_pred cCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHH---HHHHhCC-CCCCCcEEEEEeCC-CcCCcCCHHHHHhh
Q psy2161 33 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DSLLADD-ALTDVPILILGNKI-DIFDAASEDEVRHF 107 (155)
Q Consensus 33 t~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l---~~~~~~~-~~~~~piilv~nK~-Dl~~~~~~~~i~~~ 107 (155)
.+||.+++++|++||+++|++|||+|+++.+.++ .+..+ ..++... .+.+.|+++++||. |+++..+..++.+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~ 187 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 187 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence 3489999999999999999999999999887665 56666 4444443 24789999999995 78889999999999
Q ss_pred hcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 108 FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++. .+ .+.|.+..|||++|+|+.|.++||.+.+
T Consensus 188 L~L~------------~l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 188 LHLN------------LL-NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TTGG------------GG-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred cCCc------------CC-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 9883 34 3789999999999999999999999865
No 105
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.74 E-value=1.3e-22 Score=140.44 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=99.1
Q ss_pred CCCCCC-CcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHH
Q psy2161 2 LKNDRT-AQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLL 76 (155)
Q Consensus 2 l~~~~~-~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~ 76 (155)
|.++.+ ..+.||.+.. ...+.+++ +.+++|||||++.+...+..+++++|++++|+|++++.+++... .|+..+.
T Consensus 50 l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~ 129 (204)
T 3th5_A 50 YTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 129 (204)
Confidence 344443 4567787764 33444444 78889999999999999999999999999999999999998886 6776664
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
... .++|+++|+||+|+.+.....+.............. ........+. .+++|||++|.|++++|+++.+.+
T Consensus 130 ~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 130 HHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQ---GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 322 378999999999986521111100000000000000 0001112233 789999999999999999998753
No 106
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.84 E-value=6.9e-21 Score=140.08 Aligned_cols=133 Identities=18% Similarity=0.270 Sum_probs=90.2
Q ss_pred cccCCCCCceeEEEECCEEEEEEEcCCChhhHH---hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCC
Q psy2161 9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTD 83 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~ 83 (155)
.+.||+|+....+. ..+++++||||||++|+. .+..||++|+++|+|||+++. +.....|+.+++.. ...++
T Consensus 30 ~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ 106 (331)
T 3r7w_B 30 YLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDE--YINAITNLAMIIEYAYKVNPS 106 (331)
T ss_dssp TCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSC--TTHHHHHHHHHHHHHHHHCTT
T ss_pred eecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCch--HHHHHHHHHHHHHHHhhcCCC
Confidence 36799999876653 348999999999999964 468999999999999999987 43333343332211 11357
Q ss_pred CcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCccccccc-ccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREI-LQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++++||+|+.+.... .++....... .... ....++.+++|||++ .||.++|..+++.+
T Consensus 107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~---------la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEE---------LLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHT---------TSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred CcEEEEEECcccCchhhhhhHHHHhhHHHHHH---------HHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 999999999999652111 1222211110 0000 112468999999998 59999999988754
No 107
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.83 E-value=3.3e-20 Score=136.75 Aligned_cols=129 Identities=16% Similarity=0.245 Sum_probs=99.1
Q ss_pred CCcccCCCCCc-eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHH-HHHHHHHhCCCCC
Q psy2161 7 TAQHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDSLLADDALT 82 (155)
Q Consensus 7 ~~~~~pT~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~-~~l~~~~~~~~~~ 82 (155)
...+.||.+.. ...+..++ +.+++|||||++.+...+..+++++|++++|+|++++.++..+. .|+..+.... .
T Consensus 181 ~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~ 258 (332)
T 2wkq_A 181 PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--P 258 (332)
T ss_dssp CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--T
T ss_pred CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--C
Confidence 34677888765 45566666 67779999999999999999999999999999999999998876 6777665432 3
Q ss_pred CCcEEEEEeCCCcCCc--------------CCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHH
Q psy2161 83 DVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~ 147 (155)
++|+++|+||+|+.+. +...+....... .+. .+++|||++|.|++++|
T Consensus 259 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~gi~~l~ 321 (332)
T 2wkq_A 259 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE-----------------IGAVKYLECSALTQRGLKTVF 321 (332)
T ss_dssp TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-----------------TTCSEEEECCTTTCTTHHHHH
T ss_pred CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH-----------------cCCcEEEEecCCCCcCHHHHH
Confidence 7899999999998542 222222222222 233 79999999999999999
Q ss_pred HHHHhhc
Q psy2161 148 RWLANYI 154 (155)
Q Consensus 148 ~~l~~~i 154 (155)
+++.+.+
T Consensus 322 ~~l~~~~ 328 (332)
T 2wkq_A 322 DEAIRAV 328 (332)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 108
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.82 E-value=3.6e-20 Score=127.55 Aligned_cols=118 Identities=13% Similarity=0.204 Sum_probs=83.9
Q ss_pred EEEEEEEcCCChhhHHhH---HhhcCCCCEEEEEEECCCC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVW---RDYFPAVDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS 100 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~---~~~~~~ad~ii~v~D~~~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~ 100 (155)
+++++|||||++.|.... ..+++++|++++|||++++ +++..+..|+.++... ..+.|+++|+||+|+.+...
T Consensus 69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~ 146 (196)
T 3llu_A 69 VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDH 146 (196)
T ss_dssp CCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHH
T ss_pred eEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhh
Confidence 899999999999987665 8999999999999999987 5556666777766432 24789999999999864110
Q ss_pred ----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 ----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 ----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+....... .........++.+++|||++ .|++++|+.+.+.+
T Consensus 147 ~~~~~~~v~~~~~~~--------~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 147 KIETQRDIHQRANDD--------LADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHH--------HHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhHHHhHHHHHHHHH--------HHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 11111111000 00000113568999999999 99999999998764
No 109
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.81 E-value=9.2e-21 Score=138.90 Aligned_cols=129 Identities=10% Similarity=0.040 Sum_probs=96.9
Q ss_pred CCCCC--CcccCCCCCceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhC
Q psy2161 3 KNDRT--AQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLAD 78 (155)
Q Consensus 3 ~~~~~--~~~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~ 78 (155)
..|.+ ..+.||+|.... +.. .+.++++||+ +++++.+++.|++++|++++|+|++++. ++..+..|+..+..
T Consensus 38 ~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~- 113 (301)
T 1u0l_A 38 LRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK- 113 (301)
T ss_dssp ECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-
T ss_pred EcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-
Confidence 34554 578899997643 333 2238999999 8899999999999999999999999987 68888889887643
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 79 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.++|+++|+||+|+.+....+++.+.... +... +.+++|||++|.|++++|.++...
T Consensus 114 ---~~~piilv~NK~DL~~~~~v~~~~~~~~~--------------~~~~-~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 114 ---NELETVMVINKMDLYDEDDLRKVRELEEI--------------YSGL-YPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp ---TTCEEEEEECCGGGCCHHHHHHHHHHHHH--------------HTTT-SCEEECCTTTCTTHHHHHHHHSSS
T ss_pred ---CCCCEEEEEeHHHcCCchhHHHHHHHHHH--------------Hhhh-CcEEEEECCCCcCHHHHHHHhcCC
Confidence 37899999999999652211223333332 1112 579999999999999999998653
No 110
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.81 E-value=1.5e-20 Score=128.30 Aligned_cols=132 Identities=11% Similarity=0.157 Sum_probs=91.7
Q ss_pred CcccCCCCCceeEEEE-------CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC-CchHHHHHHHHHHHhCC
Q psy2161 8 AQHMPTLHPTSEELSM-------GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR-SRFPESKYELDSLLADD 79 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~-------~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~-~~~~~~~~~l~~~~~~~ 79 (155)
..+.||+|.......+ ..+.+.+|||+|++.+...+..++++++++++|+|++++ .++..+..|+.++....
T Consensus 31 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~ 110 (184)
T 2zej_A 31 GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA 110 (184)
T ss_dssp ------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC
T ss_pred CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC
Confidence 4578999987544432 247999999999999999999999999999999999987 57888889998876432
Q ss_pred CCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCC-ChHHHHHHHHhh
Q psy2161 80 ALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQ-GFGNGFRWLANY 153 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~-~i~~~~~~l~~~ 153 (155)
.+.|+++|+||+|+.+..... +....+.. .... ....++++||++|. |++++++.+.+.
T Consensus 111 --~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 111 --SSSPVILVGTHLDVSDEKQRKACMSKITKELLN-------------KRGFPAIRDYHFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp --TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTT-------------CTTSCEEEEEEECCTTSCCHHHHHHHHHHHHH
T ss_pred --CCCcEEEEEECCCcccchhhHHHHHHHHHHHHH-------------hcCCcchhheEEEecccCchhHHHHHHHHHHH
Confidence 468999999999986521111 11111111 0111 11248999999997 999999998765
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 176 ~ 176 (184)
T 2zej_A 176 S 176 (184)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.80 E-value=2.2e-19 Score=121.15 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=93.4
Q ss_pred cccCCCCC--ceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 9 QHMPTLHP--TSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 9 ~~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
.+.|+.+. ....+.+++..+.+|||||++.+...+..+++.+|++++|+|++++..... ...+..+. ..+.|+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~l~~~~----~~~~p~ 110 (178)
T 2lkc_A 36 QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQT-VEAINHAK----AANVPI 110 (178)
T ss_dssp SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHH-HHHHHHHG----GGSCCE
T ss_pred CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH----hCCCCE
Confidence 34455544 456788899999999999999999999999999999999999987543322 23333332 236899
Q ss_pred EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+||+|+.+. ...++...+..... ........+.+++|||++|.|+++++++|.+.+
T Consensus 111 ilv~nK~Dl~~~-~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 111 IVAINKMDKPEA-NPDRVMQELMEYNL--------VPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp EEEEETTTSSCS-CHHHHHHHHTTTTC--------CBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred EEEEECccCCcC-CHHHHHHHHHhcCc--------ChhHcCCcccEEEEecCCCCCHHHHHHHHHHhh
Confidence 999999999753 33444444432110 000011237899999999999999999998754
No 112
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.80 E-value=2.6e-19 Score=131.50 Aligned_cols=128 Identities=13% Similarity=0.185 Sum_probs=97.6
Q ss_pred cccCCCCCceeEEEE-CCEEEEEEEcCCChhh-----HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHH---HHHHhCC
Q psy2161 9 QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQA-----RRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DSLLADD 79 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l---~~~~~~~ 79 (155)
.+.||++.....+.+ +++++++|||||++.+ ...+..+++++|++++|+|++++.+++.+..|. ..+...
T Consensus 34 ~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~- 112 (307)
T 3r7w_A 34 RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKY- 112 (307)
T ss_dssp GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHH-
T ss_pred CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHh-
Confidence 577999998888887 5699999999999988 678899999999999999999999998886654 444322
Q ss_pred CCCCCcEEEEEeCCCcCCc--------CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 80 ALTDVPILILGNKIDIFDA--------ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
..++|+++|+||+|+.+. ....++.+.... .+...+.+++|||++ .|+.++|..+.
T Consensus 113 -~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~--------------~g~~~~~~~~tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 113 -SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE--------------FGFPNLIGFPTSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp -CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT--------------TTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred -CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH--------------cCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence 247999999999998651 111233333222 111247899999999 89999998877
Q ss_pred hh
Q psy2161 152 NY 153 (155)
Q Consensus 152 ~~ 153 (155)
+.
T Consensus 177 ~~ 178 (307)
T 3r7w_A 177 CS 178 (307)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.80 E-value=3.6e-19 Score=118.16 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=84.8
Q ss_pred CceeEEEECCEEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
.....+..++..+.+|||||+.. +...+..+++.+|++++|+|++++.+.. ..++...+.. .+.|+++
T Consensus 39 ~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~il 113 (161)
T 2dyk_A 39 LKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVIL 113 (161)
T ss_dssp CEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEE
T ss_pred ceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEE
Confidence 34667778889999999999876 5667888999999999999998764442 2333333322 3689999
Q ss_pred EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
|+||+|+.+. .+++.+.. ..++ .+++|||++|.|++++|+++.+.++
T Consensus 114 v~nK~Dl~~~--~~~~~~~~------------------~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 114 VATKVDDPKH--ELYLGPLY------------------GLGFGDPIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp EEECCCSGGG--GGGCGGGG------------------GGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEECcccccc--hHhHHHHH------------------hCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence 9999998653 11111111 1223 5899999999999999999998875
No 114
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=130.84 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=87.7
Q ss_pred cCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHH---HHHhCC-CCCCCcEEEEEeC-CCcCCcCCHHHHHhh
Q psy2161 33 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD---SLLADD-ALTDVPILILGNK-IDIFDAASEDEVRHF 107 (155)
Q Consensus 33 t~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~---~~~~~~-~~~~~piilv~nK-~Dl~~~~~~~~i~~~ 107 (155)
.+||.+.+++|++||.++|++|||+|+++.+.++ .+..+. .+++.. .+.+.|+++++|| .|+.+..+..++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4688999999999999999999999999988765 444443 344322 2468999999996 689889999999999
Q ss_pred hcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 108 FGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++. .+ .+.|.+..|||++|+|+.|.++||.+.+
T Consensus 273 L~L~------------~l-~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 273 LHLN------------LL-NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp TTGG------------GG-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred cCCc------------cC-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 9883 34 3789999999999999999999999865
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=5.7e-18 Score=119.14 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=86.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCC------hhh---HHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGH------VQA---RRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDAL 81 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~------~~~---~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~ 81 (155)
|.......+..++..+.+|||||+ +.. ...+..++..+|++++|+|++++.++.. ...|+..+... .
T Consensus 63 t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~ 140 (228)
T 2qu8_A 63 TKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--F 140 (228)
T ss_dssp --CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C
T ss_pred ceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--h
Confidence 344445666778899999999998 331 1234456788999999999999877742 34666666432 2
Q ss_pred CCCcEEEEEeCCCcCC--cCCHH---HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFD--AASED---EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~--~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+ .+... ........ ....+.+++|||++|.|++++|++|.+.+
T Consensus 141 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 141 SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---------------VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH---------------CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh---------------cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 4789999999999975 23322 12222221 00127899999999999999999998754
No 116
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=3.3e-18 Score=114.62 Aligned_cols=119 Identities=20% Similarity=0.254 Sum_probs=83.9
Q ss_pred cccCCCC--CceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 9 QHMPTLH--PTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 9 ~~~pT~~--~~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
...|+.. .....+.+++..+++|||||+..+. .....|++ +++++++|+|+++. +....|+..+..
T Consensus 31 ~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~---~~~~~~~~~~~~- 106 (165)
T 2wji_A 31 GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATAL---ERNLYLTLQLME- 106 (165)
T ss_dssp C-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCH---HHHHHHHHHHHH-
T ss_pred cCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCch---hHhHHHHHHHHh-
Confidence 3445443 3466778889999999999988764 45566775 89999999999863 344557766653
Q ss_pred CCCCCCcEEEEEeCCCcCCc--CC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDA--AS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~--~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+... +. ...+... .+++++++||++|.|++++|+++.+.+
T Consensus 107 ---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~--------------------~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 107 ---MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------------------LGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------------------HTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ---cCCCEEEEEEchHhccccChhhHHHHHHHH--------------------hCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 26899999999998541 11 1222221 134789999999999999999998765
No 117
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.78 E-value=1.9e-18 Score=119.07 Aligned_cols=129 Identities=19% Similarity=0.307 Sum_probs=100.1
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||.|.. ...+.+++ +.+.+||++|++.++..+..++++++++++|+|+++..+++.+..|+..+... ...+
T Consensus 32 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 110 (199)
T 2f9l_A 32 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN 110 (199)
T ss_dssp C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 3566888764 56777887 67899999999999888999999999999999999988888888888766432 2246
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++++||+|+.+ .....+....... .++.++++||+++.|++++++++.+.+
T Consensus 111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CEEEEEEECTTCGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEEECcccccccCcCHHHHHHHHHH-----------------cCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 89999999999965 3344444444333 346789999999999999999998754
No 118
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=1e-18 Score=119.63 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=82.8
Q ss_pred CCcccCCCCCc--eeEEEECCEEEEEEEcCC----------ChhhHHhHHhhcCCC---CEEEEEEECCCCCchHHHHHH
Q psy2161 7 TAQHMPTLHPT--SEELSMGDIVFTTHDLGG----------HVQARRVWRDYFPAV---DAIVFIIDASDRSRFPESKYE 71 (155)
Q Consensus 7 ~~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~~~~~ 71 (155)
...+.||.|.+ ...+..+ .++.+||||| +..+...+..+++.+ |++++|+|++++.++.... +
T Consensus 49 ~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~ 126 (195)
T 1svi_A 49 LARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-M 126 (195)
T ss_dssp -----------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-H
T ss_pred ccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-H
Confidence 34556677654 2333443 3799999999 788888888888877 9999999999877775532 1
Q ss_pred HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHH
Q psy2161 72 LDSLLADDALTDVPILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
+..+ .. .+.|+++|+||+|+.+..... ++.+.+.. .....++++||++|.|+++++
T Consensus 127 ~~~~-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~Sa~~~~gv~~l~ 186 (195)
T 1svi_A 127 YEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNI----------------DPEDELILFSSETKKGKDEAW 186 (195)
T ss_dssp HHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTC----------------CTTSEEEECCTTTCTTHHHHH
T ss_pred HHHH-HH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcc----------------cCCCceEEEEccCCCCHHHHH
Confidence 2222 11 368999999999997633222 22222221 135689999999999999999
Q ss_pred HHHHhhc
Q psy2161 148 RWLANYI 154 (155)
Q Consensus 148 ~~l~~~i 154 (155)
+++.+.+
T Consensus 187 ~~l~~~l 193 (195)
T 1svi_A 187 GAIKKMI 193 (195)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 119
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.78 E-value=8.9e-19 Score=118.35 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=85.1
Q ss_pred CCceeEEEECCEEEEEEEcCCChhh----HH----hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 15 HPTSEELSMGDIVFTTHDLGGHVQA----RR----VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 15 ~~~~~~~~~~~~~~~~~Dt~G~~~~----~~----~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
......+.+++..+.+|||||+..+ .. ....+++++|++++|+|++++.++.. ..|+..+.... ..++|+
T Consensus 41 ~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ 118 (172)
T 2gj8_A 41 DVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPI 118 (172)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCE
T ss_pred ceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCE
Confidence 3446778888999999999998542 11 12246889999999999999888763 46666665432 246899
Q ss_pred EEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+||+|+.+.. ... .......+++|||++|.|++++|+++.+.+
T Consensus 119 ilv~NK~Dl~~~~--------~~~--------------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 119 TVVRNKADITGET--------LGM--------------SEVNGHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp EEEEECHHHHCCC--------CEE--------------EEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred EEEEECccCCcch--------hhh--------------hhccCCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999985321 000 111356899999999999999999998865
No 120
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=9.1e-19 Score=119.65 Aligned_cols=133 Identities=15% Similarity=0.184 Sum_probs=90.4
Q ss_pred CCCCCCcccCCCCCcee-EEEECCEEEEEEEcCC----------ChhhHHhHHhhcCCC---CEEEEEEECCCCCchHH-
Q psy2161 3 KNDRTAQHMPTLHPTSE-ELSMGDIVFTTHDLGG----------HVQARRVWRDYFPAV---DAIVFIIDASDRSRFPE- 67 (155)
Q Consensus 3 ~~~~~~~~~pT~~~~~~-~~~~~~~~~~~~Dt~G----------~~~~~~~~~~~~~~a---d~ii~v~D~~~~~~~~~- 67 (155)
.++....+.||.+.+.. .+...+.++.+||||| +..+...+..+++.+ +++++|+|+++..+...
T Consensus 44 ~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~ 123 (195)
T 3pqc_A 44 FNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDL 123 (195)
T ss_dssp HTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHH
T ss_pred HcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHH
Confidence 34456667788876532 2222345788999999 777888888888876 99999999987544432
Q ss_pred -HHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccC-ccEEEEEeeeccCCChHH
Q psy2161 68 -SKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM-RPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 68 -~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~ 145 (155)
...|+... +.|+++|+||+|+.+........+..... +.. ..+++++|||++|.|+++
T Consensus 124 ~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~Sa~~~~gv~~ 183 (195)
T 3pqc_A 124 MMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKV-------------FSKYGEYTIIPTSSVTGEGISE 183 (195)
T ss_dssp HHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHH-------------HHSSCCSCEEECCTTTCTTHHH
T ss_pred HHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHH-------------HhhcCCCceEEEecCCCCCHHH
Confidence 22333322 68999999999997533333222222110 111 346799999999999999
Q ss_pred HHHHHHhhcC
Q psy2161 146 GFRWLANYID 155 (155)
Q Consensus 146 ~~~~l~~~i~ 155 (155)
+|+++.+.+.
T Consensus 184 l~~~l~~~l~ 193 (195)
T 3pqc_A 184 LLDLISTLLK 193 (195)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999998753
No 121
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.7e-19 Score=129.24 Aligned_cols=114 Identities=16% Similarity=0.114 Sum_probs=85.6
Q ss_pred CEEEEEEE-----------------------cCCChhhHHhHHhhcC---------------------CCCEEEEEEECC
Q psy2161 25 DIVFTTHD-----------------------LGGHVQARRVWRDYFP---------------------AVDAIVFIIDAS 60 (155)
Q Consensus 25 ~~~~~~~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~ii~v~D~~ 60 (155)
.+++++|| ++|++++..++..+++ +||++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 38899999 7777778888888887 799999999999
Q ss_pred CC--CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeec
Q psy2161 61 DR--SRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVL 138 (155)
Q Consensus 61 ~~--~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 138 (155)
++ .+|+.+..|+..+.......++|+++|+||+|+.+....++....... ..++.+++|||+
T Consensus 174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----------------~~~~~~~e~SAk 237 (255)
T 3c5h_A 174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----------------KKNLQVVETSAR 237 (255)
T ss_dssp C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----------------SSSCCEEECBTT
T ss_pred CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----------------cCCCeEEEEECC
Confidence 98 999999999988865422346899999999998642112233222221 124679999999
Q ss_pred cCCChHHHHHHHHhhc
Q psy2161 139 KRQGFGNGFRWLANYI 154 (155)
Q Consensus 139 ~~~~i~~~~~~l~~~i 154 (155)
+|.|++++|++|.+.+
T Consensus 238 ~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 238 SNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 122
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.76 E-value=1.5e-17 Score=122.18 Aligned_cols=125 Identities=17% Similarity=0.164 Sum_probs=91.7
Q ss_pred CCCCceeEEEEC-CEEEEEEEcCCChh----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC
Q psy2161 13 TLHPTSEELSMG-DIVFTTHDLGGHVQ----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL 81 (155)
Q Consensus 13 T~~~~~~~~~~~-~~~~~~~Dt~G~~~----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~ 81 (155)
|.......+..+ +.++.+|||||+.. +...+..+++.+|++++|+|+++..++.....|+..+..
T Consensus 45 T~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---- 120 (308)
T 3iev_A 45 TRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---- 120 (308)
T ss_dssp CCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----
T ss_pred eeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----
Confidence 333345566777 89999999999843 446778889999999999999998888877766776643
Q ss_pred CCCcEEEEEeCCCcC-CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 82 TDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 82 ~~~piilv~nK~Dl~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
.+.|+++|+||+|+. +.....+....+.. .......++++||++|.|++++++++.+.++
T Consensus 121 ~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~--------------~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 121 LNKPVIVVINKIDKIGPAKNVLPLIDEIHK--------------KHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp GCCCEEEEEECGGGSSSGGGGHHHHHHHHH--------------HCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHHHH--------------hccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 368999999999986 32222222222221 0112357999999999999999999988763
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.74 E-value=9.5e-18 Score=115.08 Aligned_cols=129 Identities=19% Similarity=0.278 Sum_probs=101.4
Q ss_pred CcccCCCCCc--eeEEEECC--EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 8 AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
..+.||++.. ...+.+++ +.+++||++|++++...+..+++.++++++|+|.++..+++.+..|+..+... ...+
T Consensus 56 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~ 134 (191)
T 1oix_A 56 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSN 134 (191)
T ss_dssp CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTT
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCC
Confidence 4677888864 56777887 56778999999999889999999999999999999888888877788766432 2246
Q ss_pred CcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.|+++++||+|+.+ .....+....... .++.++++||+++.|++++++++.+.+
T Consensus 135 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~-----------------~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEK-----------------NGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CEEEEEEECGGGGGGCCSCHHHHHHHHHH-----------------TTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEEECcccccccccCHHHHHHHHHH-----------------cCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 89999999999865 3344444443333 346789999999999999999998764
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=3.3e-17 Score=111.48 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=87.7
Q ss_pred cccCCCCC--ceeEEEECCEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhC
Q psy2161 9 QHMPTLHP--TSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLAD 78 (155)
Q Consensus 9 ~~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~ 78 (155)
...|+... ....+.+++..+.+|||||+..+. ..+..+++ .++++++|+|.++ ++....|+..+..
T Consensus 35 ~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~- 110 (188)
T 2wjg_A 35 GNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME- 110 (188)
T ss_dssp EECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-
T ss_pred cCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-
Confidence 34455443 466778889999999999987763 45667775 5999999999874 5666677777753
Q ss_pred CCCCCCcEEEEEeCCCcCCc--C--CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDA--A--SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+... . ...++.+. .++.++++||++|.|++++|+++.+.+
T Consensus 111 ---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--------------------~~~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 111 ---MGANLLLALNKMDLAKSLGIEIDVDKLEKI--------------------LGVKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp ---TTCCEEEEEECHHHHHHTTCCCCHHHHHHH--------------------HTSCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ---cCCCEEEEEEhhhccccccchHHHHHHHHH--------------------hCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 36899999999998542 1 12222222 234799999999999999999998764
No 125
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=3.8e-18 Score=116.19 Aligned_cols=134 Identities=13% Similarity=0.078 Sum_probs=87.2
Q ss_pred CcccCCCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcCC-CCEEEEEEECCCCCchHHH-HHHHHH
Q psy2161 8 AQHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPA-VDAIVFIIDASDRSRFPES-KYELDS 74 (155)
Q Consensus 8 ~~~~pT~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~~-ad~ii~v~D~~~~~~~~~~-~~~l~~ 74 (155)
..+.|+.......+.++ .+.+||||| ++.+...+..++++ ++++++|+++.+..++..+ ..|...
T Consensus 28 ~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~ 105 (190)
T 2cxx_A 28 RGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKR 105 (190)
T ss_dssp SSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHT
T ss_pred cCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhcc
Confidence 34566666666666665 789999999 67788888888887 7766666666666677665 445432
Q ss_pred --------HHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161 75 --------LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 75 --------~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
+.......++|+++|+||+|+.+.. ..+........+. ........+++|||++|.|++++
T Consensus 106 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~Sa~~~~~v~~l 174 (190)
T 2cxx_A 106 GEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEV----------PLSEIDKVFIPISAKFGDNIERL 174 (190)
T ss_dssp TCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTC----------CGGGHHHHEEECCTTTCTTHHHH
T ss_pred CccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhh----------hhhccCCcEEEEecCCCCCHHHH
Confidence 1111112468999999999997532 2223332222100 00001235899999999999999
Q ss_pred HHHHHhhc
Q psy2161 147 FRWLANYI 154 (155)
Q Consensus 147 ~~~l~~~i 154 (155)
|+++.+.+
T Consensus 175 ~~~l~~~~ 182 (190)
T 2cxx_A 175 KNRIFEVI 182 (190)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99998754
No 126
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.71 E-value=4e-17 Score=114.03 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=78.3
Q ss_pred CCEEEEEEEcCC----------ChhhHHhHHhhcCC---CCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 24 GDIVFTTHDLGG----------HVQARRVWRDYFPA---VDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 24 ~~~~~~~~Dt~G----------~~~~~~~~~~~~~~---ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
++..+.+||||| ++.+...+..|++. +|++++|+|++++.+. ....++..+.. .++|+++|+
T Consensus 77 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~----~~~p~i~v~ 151 (223)
T 4dhe_A 77 AEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP----TGKPIHSLL 151 (223)
T ss_dssp TSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG----GCCCEEEEE
T ss_pred CCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh----cCCCEEEEE
Confidence 358999999999 45566677777766 7889999999875332 22344444432 468999999
Q ss_pred eCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 91 NKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 91 nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
||+|+.+.... ..+.+.+... .........+++++||++|.|+++++++|.+.++
T Consensus 152 nK~Dl~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 152 TKCDKLTRQESINALRATQKSLDAY----------RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLR 210 (223)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHH----------HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC
T ss_pred eccccCChhhHHHHHHHHHHHHHhh----------hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcC
Confidence 99998652221 1122222110 0000024578999999999999999999988653
No 127
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.71 E-value=1e-16 Score=117.41 Aligned_cols=117 Identities=21% Similarity=0.195 Sum_probs=83.4
Q ss_pred eeEEEECCEEEEEEEcCCChh--------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~--------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...+..++.++++|||||... +......+++.+|++++|+|++++.+.. ..|+.+.+... ..+.|+++|
T Consensus 47 ~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV 123 (301)
T 1wf3_A 47 RGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLV 123 (301)
T ss_dssp EEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEE
T ss_pred EEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEE
Confidence 444566789999999999765 5667788999999999999998764443 34554333322 146899999
Q ss_pred EeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 90 GNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 90 ~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+||+|+.+... .+...+.. + .....++++||++|.|++++++++.+.+
T Consensus 124 ~NK~Dl~~~~~--~~~~~~~~--------------~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 124 GNKLDAAKYPE--EAMKAYHE--------------L-LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp EECGGGCSSHH--HHHHHHHH--------------T-STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred EECcccCCchH--HHHHHHHH--------------h-cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 99999864211 02222221 1 1224689999999999999999998765
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.71 E-value=4.6e-18 Score=133.23 Aligned_cols=125 Identities=14% Similarity=0.174 Sum_probs=87.7
Q ss_pred CcccCCCCCceeEE--------EEC----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 8 AQHMPTLHPTSEEL--------SMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 8 ~~~~pT~~~~~~~~--------~~~----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
..+.||+|....+. ..+ ++++.+|||||++.+...+..+++.+|++++|+|+++. +....|+..+
T Consensus 68 ~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l 144 (535)
T 3dpu_A 68 PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI 144 (535)
T ss_dssp -------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH
T ss_pred CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH
Confidence 46779999876543 222 48999999999999999999999999999999999764 5556777777
Q ss_pred HhCCCCCCCcEEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 76 LADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.... .+.|+++|+||+|+.+ .+..+++...+.. .+..++++||++|.|++++++++.+.
T Consensus 145 ~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~~~vSA~~g~gi~eL~~~l~~~ 205 (535)
T 3dpu_A 145 EKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA-----------------IENRFHRISCKNGDGVESIAKSLKSA 205 (535)
T ss_dssp HHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG-----------------GTTCEEECCC-----CTTHHHHHHHH
T ss_pred HHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh-----------------cCCceEEEecCcccCHHHHHHHHHHH
Confidence 6433 3689999999999875 3455555555544 23469999999999999999999875
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 206 ~ 206 (535)
T 3dpu_A 206 V 206 (535)
T ss_dssp H
T ss_pred H
Confidence 4
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.70 E-value=1.8e-17 Score=118.86 Aligned_cols=117 Identities=18% Similarity=0.253 Sum_probs=84.2
Q ss_pred ccCCCCC--ceeEEEECCEEEEEEEcCCChhhHH----------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 10 HMPTLHP--TSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 10 ~~pT~~~--~~~~~~~~~~~~~~~Dt~G~~~~~~----------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
..|+... ....+.+++..+.+|||||..++.+ .+..|+ +++|++++|+|+++.++.. .+...+
T Consensus 30 ~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~---~l~~~l 106 (256)
T 3iby_A 30 NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHL---YLTSQL 106 (256)
T ss_dssp ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHH---HHHHHH
T ss_pred CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHH---HHHHHH
Confidence 3454443 3667778899999999999876653 567777 8999999999998744333 333333
Q ss_pred HhCCCCCCCcEEEEEeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 76 LADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
. . .++|+++|+||+|+... .....+.+.+ +++++++||++|.|++++++++.
T Consensus 107 ~-~---~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~ 162 (256)
T 3iby_A 107 F-E---LGKPVVVALNMMDIAEHRGISIDTEKLESLL--------------------GCSVIPIQAHKNIGIPALQQSLL 162 (256)
T ss_dssp T-T---SCSCEEEEEECHHHHHHTTCEECHHHHHHHH--------------------CSCEEECBGGGTBSHHHHHHHHH
T ss_pred H-H---cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc--------------------CCCEEEEECCCCCCHHHHHHHHH
Confidence 2 1 26899999999998542 2233333333 34799999999999999999997
Q ss_pred hh
Q psy2161 152 NY 153 (155)
Q Consensus 152 ~~ 153 (155)
+.
T Consensus 163 ~~ 164 (256)
T 3iby_A 163 HC 164 (256)
T ss_dssp TC
T ss_pred hh
Confidence 63
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.70 E-value=1.9e-16 Score=122.44 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=88.4
Q ss_pred CCCCceeEEEECCEEEEEEEcCCCh-hhH--------HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHV-QAR--------RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~-~~~--------~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
|..+....+.+++..+.+|||||.. .+. .....+++.||++++|+|++++.+++.. .+++.+ .+
T Consensus 278 T~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~-~il~~l------~~ 350 (482)
T 1xzp_A 278 TRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR-KILERI------KN 350 (482)
T ss_dssp SSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHH-HHHHHH------TT
T ss_pred eeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHH-HHHHHh------cC
Confidence 5556678889999999999999987 442 2345678899999999999988777553 233332 36
Q ss_pred CcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 84 VPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 84 ~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+|+++|+||+|+.+....+++...+.. ..+++++||++|.|+++++++|.+.+
T Consensus 351 ~piivV~NK~DL~~~~~~~~~~~~~~~------------------~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 351 KRYLVVINKVDVVEKINEEEIKNKLGT------------------DRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp SSEEEEEEECSSCCCCCHHHHHHHHTC------------------STTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCEEEEEECcccccccCHHHHHHHhcC------------------CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999765554555443321 23589999999999999999998753
No 131
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=1.2e-16 Score=123.53 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=75.3
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhH--------HhhcCCCCEEEEEEECCCCCchHHH---HHHHHHHHhCCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYFPAVDAIVFIIDASDRSRFPES---KYELDSLLADDAL 81 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ad~ii~v~D~~~~~~~~~~---~~~l~~~~~~~~~ 81 (155)
|.......+.++++.+.+|||||+..+...+ ..+++++|++++|+|++++.++... ..|+..+
T Consensus 268 T~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l------ 341 (476)
T 3gee_A 268 TRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH------ 341 (476)
T ss_dssp -----CEEEEETTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC------
T ss_pred eEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc------
Confidence 3334567888899999999999998766443 4478999999999999998887543 3333333
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+...... +.+.. . ...+++++||++|.|++++++++.+.+
T Consensus 342 ~~~piIvV~NK~Dl~~~~~~~~--~~l~~--------------~--~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 342 PAAKFLTVANKLDRAANADALI--RAIAD--------------G--TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp TTSEEEEEEECTTSCTTTHHHH--HHHHH--------------H--HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCCCEEEEEECcCCCCccchhH--HHHHh--------------c--CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 2689999999999975332211 11111 0 013689999999999999999998754
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.69 E-value=2.1e-16 Score=119.94 Aligned_cols=112 Identities=14% Similarity=0.183 Sum_probs=86.4
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE---- 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~---- 101 (155)
.++.+|||||++.|...+..+++.+|++++|+|+++..++.....++..+... ..+|+++|+||+|+.+....
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~ 151 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQY 151 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHH
Confidence 78999999999999999999999999999999999877677777666555321 23699999999998652211
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++.+.+.. .....++++++||++|.|+++++++|.+.+
T Consensus 152 ~~i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 152 RQIKQFTKG--------------TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHh--------------hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 222222222 222456899999999999999999998765
No 133
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=3e-16 Score=124.01 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=88.3
Q ss_pred eeEEEEC-----CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 18 SEELSMG-----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 18 ~~~~~~~-----~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
...+.+. ++.+++|||||+..|...+..+++.+|++++|+|+++..+......|..... .++|+++|+||
T Consensus 58 ~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNK 132 (599)
T 3cb4_D 58 SVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNK 132 (599)
T ss_dssp EEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEEC
T ss_pred EEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeec
Confidence 3455553 2899999999999999999999999999999999998777766666655442 36899999999
Q ss_pred CCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 93 IDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 93 ~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+|+.+.. ..++...+... +......++++||++|.|++++++++.+.++
T Consensus 133 iDl~~a~-~~~v~~ei~~~-------------lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 133 IDLPAAD-PERVAEEIEDI-------------VGIDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTSTTCC-HHHHHHHHHHH-------------TCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred cCccccc-HHHHHHHHHHH-------------hCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 9997633 22222222110 0111124799999999999999999988764
No 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.68 E-value=4e-16 Score=123.21 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=84.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~ 105 (155)
+.+++|||||+..|...+..+++.+|++++|+|+++..+......|..... .++|+++|+||+|+.+.. ...+.
T Consensus 73 ~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~-~~~v~ 146 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD-VDRVK 146 (600)
T ss_dssp EEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC-HHHHH
T ss_pred EEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC-HHHHH
Confidence 899999999999999999999999999999999998877766666654442 368999999999997632 33322
Q ss_pred hhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 106 HFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
+.+... +......++++||++|.|++++++++.+.++
T Consensus 147 ~el~~~-------------lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 147 KQIEEV-------------LGLDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHT-------------SCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHh-------------hCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 222210 1111124899999999999999999988764
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=1.7e-16 Score=121.73 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=82.0
Q ss_pred CceeEEEECCEEEEEEEcCCChh---------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~---------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi 86 (155)
.....+.+++.++++|||||... ++..+..++++||++++|+|+++..+... .++...+.. .++|+
T Consensus 39 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ 113 (439)
T 1mky_A 39 PVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDT 113 (439)
T ss_dssp CSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCE
T ss_pred eeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCE
Confidence 34678888999999999999653 56678889999999999999987654432 233333322 26899
Q ss_pred EEEEeCCCcCCcCCHHHH-HhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 87 LILGNKIDIFDAASEDEV-RHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 87 ilv~nK~Dl~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++|+||+|+.+.. ..++ .++... ++ .++++||++|.|+.++++++.+.+
T Consensus 114 ilv~NK~D~~~~~-~~~~~~~~~~l------------------g~~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 114 ILVANKAENLREF-EREVKPELYSL------------------GFGEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp EEEEESCCSHHHH-HHHTHHHHGGG------------------SSCSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcccc-HHHHHHHHHhc------------------CCCCEEEEeccCCCCHHHHHHHHHHhc
Confidence 9999999975321 1122 222211 12 478999999999999999998654
No 136
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=1.1e-16 Score=114.77 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=80.2
Q ss_pred eeEEEECCEEEEEEEcCCChhhHH------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
...+..++..+.+|||||+.++.+ ....|+ .++|++++|+|+++.++ ...|...+.. .++|+++|
T Consensus 44 ~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~---~~~~~~~l~~----~~~pvilv 116 (258)
T 3a1s_A 44 EGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQ---SLYLLLEILE----MEKKVILA 116 (258)
T ss_dssp EEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHH---HHHHHHHHHT----TTCCEEEE
T ss_pred EEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhh---HHHHHHHHHh----cCCCEEEE
Confidence 556667789999999999877653 335555 58999999999987543 3446666643 26899999
Q ss_pred EeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 90 GNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 90 ~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+||+|+.+. .....+...+ +++++++||++|.|++++++++.+.
T Consensus 117 ~NK~Dl~~~~~i~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 117 MTAIDEAKKTGMKIDRYELQKHL--------------------GIPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp EECHHHHHHTTCCBCHHHHHHHH--------------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred EECcCCCCccchHHHHHHHHHHc--------------------CCCEEEEEeeCCcCHHHHHHHHHHH
Confidence 999998541 1222333322 3479999999999999999998764
No 137
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.67 E-value=6.3e-17 Score=120.31 Aligned_cols=126 Identities=25% Similarity=0.349 Sum_probs=91.7
Q ss_pred CCCCCceeEEEECC-EEEEEEEcCCChh----hHHhHHhhc---CCCCEEEEEEECCC---CCchHHHHHHHHHHHhCC-
Q psy2161 12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRDYF---PAVDAIVFIIDASD---RSRFPESKYELDSLLADD- 79 (155)
Q Consensus 12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~~~~~~~~---~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~- 79 (155)
+|..++...+.+++ ..+.+|||||... +..++..|+ +.++++++|+|+++ .++++....|+.++....
T Consensus 191 tTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~ 270 (342)
T 1lnz_A 191 TTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL 270 (342)
T ss_dssp SCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS
T ss_pred cccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhh
Confidence 67777777888876 8999999999543 333444444 45999999999998 778888888888886543
Q ss_pred CCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 80 ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...++|+++|+||+|+.+.. +.+...... +. ....++++||+++.|+++++++|.+.+
T Consensus 271 ~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~--------------l~-~~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 271 RLTERPQIIVANKMDMPEAA--ENLEAFKEK--------------LT-DDYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp STTTSCBCBEEECTTSTTHH--HHHHHHHHH--------------CC-SCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred hhcCCCEEEEEECccCCCCH--HHHHHHHHH--------------hh-cCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 23579999999999986421 122222111 11 115689999999999999999998765
No 138
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=1.4e-16 Score=121.41 Aligned_cols=118 Identities=17% Similarity=0.264 Sum_probs=86.0
Q ss_pred CCCCceeEEEECC-EEEEEEEcCCChhhHHh-------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 13 TLHPTSEELSMGD-IVFTTHDLGGHVQARRV-------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 13 T~~~~~~~~~~~~-~~~~~~Dt~G~~~~~~~-------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
|.......+.+.+ .++++|||||+..+... +..+++.+|++++|+|++. ......|+..+... ++
T Consensus 69 T~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~ 141 (423)
T 3qq5_A 69 TTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EI 141 (423)
T ss_dssp -CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TC
T ss_pred eeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CC
Confidence 4445577788877 49999999998765432 5668899999999999832 23335566666433 68
Q ss_pred cEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+....+........ .++.++++||++|.|++++++++.+.+
T Consensus 142 piIvV~NK~Dl~~~~~~~~~~~l~~~-----------------~g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 142 PFVVVVNKIDVLGEKAEELKGLYESR-----------------YEAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp CEEEECCCCTTTTCCCTHHHHHSSCC-----------------TTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CEEEEEeCcCCCCccHHHHHHHHHHH-----------------cCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 99999999999764443333322222 345899999999999999999999876
No 139
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.67 E-value=7.1e-17 Score=116.78 Aligned_cols=111 Identities=20% Similarity=0.208 Sum_probs=79.6
Q ss_pred ceeEEEECCEEEEEEEcCCChhhH----------HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQAR----------RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
....+.+++..+.+|||||+..+. ..+..|+ +++|++++|+|+++.++.. .+...+... ++
T Consensus 41 ~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~~----~~ 113 (274)
T 3i8s_A 41 KEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLEL----GI 113 (274)
T ss_dssp EEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHHH----TC
T ss_pred EEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHH---HHHHHHHhc----CC
Confidence 356677778999999999987654 2344444 7999999999998754433 333333321 68
Q ss_pred cEEEEEeCCCcCCc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 85 PILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 85 piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+++|+||+|+.+. .....+.+.+ +++++++||++|.|++++++++.+.+
T Consensus 114 p~ivv~NK~Dl~~~~~~~~~~~~l~~~l--------------------g~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 114 PCIVALNMLDIAEKQNIRIEIDALSARL--------------------GCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp CEEEEEECHHHHHHTTEEECHHHHHHHH--------------------TSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred CEEEEEECccchhhhhHHHHHHHHHHhc--------------------CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999998542 1223333332 24799999999999999999998764
No 140
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.67 E-value=1.9e-15 Score=114.82 Aligned_cols=112 Identities=19% Similarity=0.214 Sum_probs=75.9
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC----CH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA----SE 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~----~~ 101 (155)
..+.+|||||++.|...+...+..+|++++|+|+++..........+..+.. ....|+++++||+|+.+.. ..
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence 7899999999999999998889999999999999865323333333332211 1235899999999997522 23
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++.+.+.. .....++++++||++|.|+++++++|.+.+
T Consensus 158 ~~i~~~l~~--------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 158 EQIKEFVKG--------------TIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHTT--------------STTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHhh--------------cCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 445554443 122356899999999999999999998755
No 141
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.66 E-value=2.4e-16 Score=121.36 Aligned_cols=121 Identities=11% Similarity=0.091 Sum_probs=87.3
Q ss_pred ceeEEEECCEEEEEEEcCC----------ChhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161 17 TSEELSMGDIVFTTHDLGG----------HVQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G----------~~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p 85 (155)
....+.+++.++++||||| ++.+...+. .+++.||++++|+|+++..+. ....|+..+.. .++|
T Consensus 234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~----~~~~ 308 (456)
T 4dcu_A 234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE----AGKA 308 (456)
T ss_dssp TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH----TTCE
T ss_pred EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH----cCCC
Confidence 4677888999999999999 677776655 478999999999999875432 22344444433 3689
Q ss_pred EEEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 86 ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 86 iilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++|+||+|+.+ ....+++.+.+... -......++++|||++|.|++++|+++.+.+
T Consensus 309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 309 VVIVVNKWDAVDKDESTMKEFEENIRDH------------FQFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp EEEEEECGGGSCCCSSHHHHHHHHHHHH------------CGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred EEEEEEChhcCCCchHHHHHHHHHHHHh------------cccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 999999999975 33344444444321 0011245799999999999999999987643
No 142
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=5.7e-16 Score=115.85 Aligned_cols=124 Identities=18% Similarity=0.222 Sum_probs=89.8
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhh---------HHhHHhhcCCCCEEEEEEECCCCC--chHHHHHHHHHHHhCCC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQA---------RRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDSLLADDA 80 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~---------~~~~~~~~~~ad~ii~v~D~~~~~--~~~~~~~~l~~~~~~~~ 80 (155)
+|.+.....+..++..+.+|||||.... ......+...+|++++|+|++++. ++.....|+..+....
T Consensus 200 ~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~- 278 (357)
T 2e87_A 200 TTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF- 278 (357)
T ss_dssp CSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-
T ss_pred eeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-
Confidence 4555666777778899999999997432 122334556799999999998876 6777778888876432
Q ss_pred CCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 81 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++|+++|+||+|+.+.....++...+.. .++++++|||++|.|++++++++.+.+
T Consensus 279 -~~~piilV~NK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 279 -KDLPFLVVINKIDVADEENIKRLEKFVKE-----------------KGLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp -TTSCEEEEECCTTTCCHHHHHHHHHHHHH-----------------TTCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred -CCCCEEEEEECcccCChHHHHHHHHHHHh-----------------cCCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 27899999999998653222223222221 245789999999999999999998754
No 143
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.66 E-value=2.1e-15 Score=117.79 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=66.9
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.|+......+.++++++++|||||+..|...+..+++.+|++++|+|+++..+......| ..+. . .++|+++|+|
T Consensus 68 iTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~-~---~~iPiivviN 142 (528)
T 3tr5_A 68 ISVTTSVMQFPYKDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR-L---RHTPIMTFIN 142 (528)
T ss_dssp CSSSSSEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH-T---TTCCEEEEEE
T ss_pred eeEEEeEEEEEeCCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH-H---cCCCEEEEEe
Confidence 355666788889999999999999999999999999999999999999987666554433 3332 2 3689999999
Q ss_pred CCCcCCc
Q psy2161 92 KIDIFDA 98 (155)
Q Consensus 92 K~Dl~~~ 98 (155)
|+|+...
T Consensus 143 K~Dl~~~ 149 (528)
T 3tr5_A 143 KMDRDTR 149 (528)
T ss_dssp CTTSCCS
T ss_pred CCCCccc
Confidence 9999653
No 144
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=2.3e-16 Score=113.99 Aligned_cols=103 Identities=25% Similarity=0.383 Sum_probs=76.6
Q ss_pred CEEEEEEEcCCChhhH------HhHHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQAR------RVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~------~~~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+..+++|||||+.++. ..+..|+. ++|++++|+|+++.+ ....|...+.. .++|+++|+||+|+.
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~----~~~p~ilv~NK~Dl~ 120 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLE---RNLYLTTQLIE----TGIPVTIALNMIDVL 120 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHH----TCSCEEEEEECHHHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchH---hHHHHHHHHHh----cCCCEEEEEEChhhC
Confidence 6889999999998765 46677776 699999999998743 33456555543 368999999999985
Q ss_pred Cc----CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 97 DA----ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 97 ~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .....+...+ +++++++||++|.|++++|+++.+.+
T Consensus 121 ~~~~~~~~~~~l~~~l--------------------g~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 121 DGQGKKINVDKLSYHL--------------------GVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHTTCCCCHHHHHHHH--------------------TSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CcCCcHHHHHHHHHHc--------------------CCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 41 1222222222 34799999999999999999998753
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=4.3e-17 Score=124.89 Aligned_cols=126 Identities=20% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCCCCcccCCCCCc----eeEEEECCEEEEEEEcCCCh--------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHH
Q psy2161 4 NDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYE 71 (155)
Q Consensus 4 ~~~~~~~~pT~~~~----~~~~~~~~~~~~~~Dt~G~~--------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~ 71 (155)
+++...+.+|.|.+ ...+.+++.++.+|||||+. .+...+..+++.||++++|+|+++..+... .+
T Consensus 25 ~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~ 102 (436)
T 2hjg_A 25 GERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EE 102 (436)
T ss_dssp EEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HH
T ss_pred CCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HH
Confidence 33444455666664 34445567899999999985 677888899999999999999988666543 45
Q ss_pred HHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHH
Q psy2161 72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 72 l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l 150 (155)
+...+.. .++|+++|+||+|+.... .++.++. ..++ .++++||++|.|+.++++++
T Consensus 103 ~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~------------------~lg~~~~~~iSA~~g~gv~~L~~~i 159 (436)
T 2hjg_A 103 VAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY------------------SLGFGEPYPISGTHGLGLGDLLDAV 159 (436)
T ss_dssp HHHHHTT---CCSCEEEEEECCCC-------CCCSSG------------------GGSSCCCEECBTTTTBTHHHHHHHH
T ss_pred HHHHHHH---cCCCEEEEEECccCccch--hhHHHHH------------------HcCCCCeEEEeCcCCCChHHHHHHH
Confidence 5555543 478999999999985421 0000111 1112 57999999999999999999
Q ss_pred Hhhc
Q psy2161 151 ANYI 154 (155)
Q Consensus 151 ~~~i 154 (155)
.+.+
T Consensus 160 ~~~l 163 (436)
T 2hjg_A 160 AEHF 163 (436)
T ss_dssp HHTG
T ss_pred HHhc
Confidence 8765
No 146
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=1.2e-15 Score=118.25 Aligned_cols=124 Identities=13% Similarity=0.132 Sum_probs=86.4
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.|+......+.++++.+++|||||++.|...+..+++.+|++++|+|+++... ......+..+.. .++|+++|+|
T Consensus 59 iTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~----~~ip~IvviN 133 (482)
T 1wb1_A 59 ITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPK-TQTGEHMLILDH----FNIPIIVVIT 133 (482)
T ss_dssp -----CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCBCEEEE
T ss_pred cEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCcc-HHHHHHHHHHHH----cCCCEEEEEE
Confidence 46666667788889999999999999999999999999999999999987422 122223332221 2578899999
Q ss_pred CCCcCCcCCH----HHHHhhhcccCccCCCcccccccc-cCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 92 KIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREIL-QMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 92 K~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+|+.+.... +++.+.+.. . .....+++++||++|.|+++++++|.+.+
T Consensus 134 K~Dl~~~~~~~~~~~~l~~~l~~--------------~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 134 KSDNAGTEEIKRTEMIMKSILQS--------------THNLKNSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHH--------------SSSGGGCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHHHHHhh--------------hcccccceEEEEECcCCCCHHHHHHHHHHhh
Confidence 9998752112 222232222 1 11256899999999999999999998754
No 147
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=4e-16 Score=119.51 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=87.1
Q ss_pred CceeEEEECCEEEEEEEcCCC----------hhhHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 16 PTSEELSMGDIVFTTHDLGGH----------VQARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~----------~~~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
.....+.+++..+++|||||+ +.|...+. .+++.||++++|+|++++.+++.. .|+..+.. .++
T Consensus 213 ~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~ 287 (436)
T 2hjg_A 213 AVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGK 287 (436)
T ss_dssp -CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTC
T ss_pred eeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCC
Confidence 346678889999999999997 55555443 578899999999999998887664 46666543 368
Q ss_pred cEEEEEeCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 85 PILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 85 piilv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
|+++|+||+|+.+... .+++.+.+... -......+++++||++|.|++++|+.+.+.
T Consensus 288 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~ 346 (436)
T 2hjg_A 288 AVVIVVNKWDAVDKDESTMKEFEENIRDH------------FQFLDYAPILFMSALTKKRIHTLMPAIIKA 346 (436)
T ss_dssp EEEEEEECGGGSCCCTTHHHHHHHHHHHH------------CGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred cEEEEEECccCCCcchHHHHHHHHHHHHh------------cccCCCCCEEEEecccCCCHHHHHHHHHHH
Confidence 9999999999876322 23333322210 011134579999999999999999988764
No 148
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=2.8e-17 Score=114.55 Aligned_cols=129 Identities=20% Similarity=0.286 Sum_probs=88.7
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCC----CCEEEEEEECC-CCCchHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVFIIDAS-DRSRFPESKYELDSLLADD---ALTDVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~----ad~ii~v~D~~-~~~~~~~~~~~l~~~~~~~---~~~~~piilv~nK~Dl 95 (155)
.+..+.+|||||+..++..+..+++. +|++++|+|++ ++.++.....|+.+++... ...++|+++|+||+|+
T Consensus 53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 55789999999999999999999987 99999999999 8899999988988887532 2257899999999999
Q ss_pred CCcCCHHHH--------Hhhhcc-----cCccCCC-----cc----c-----c-cccccCccEEEEEeeeccCCChHHHH
Q psy2161 96 FDAASEDEV--------RHFFGL-----YGLTTGK-----EF----T-----S-REILQMRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 96 ~~~~~~~~i--------~~~~~~-----~~~~~~~-----~~----~-----~-~~~~~~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
.+.....++ ...... ....+.. .. . . ........+.++.+|+..+ ++++++
T Consensus 133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~-~i~~~~ 211 (218)
T 1nrj_B 133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWR 211 (218)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CTTC----CCCGGGSSSCEEEEECBTTTT-BCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhcccccCCCCccccccCCceEEEeccccCC-cHHHHH
Confidence 765443221 111100 0000000 00 0 0 0002223577888888776 699999
Q ss_pred HHHHhh
Q psy2161 148 RWLANY 153 (155)
Q Consensus 148 ~~l~~~ 153 (155)
+|+.+.
T Consensus 212 ~~~~~~ 217 (218)
T 1nrj_B 212 EWIDEK 217 (218)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 999764
No 149
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.62 E-value=3.8e-15 Score=113.26 Aligned_cols=112 Identities=17% Similarity=0.217 Sum_probs=79.5
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC----CH
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA----SE 101 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~----~~ 101 (155)
.++++|||||+..|...+...+..+|++++|+|+++..........+..+.. ....|+++|+||+|+.+.. ..
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~~~~~~~ 159 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKEKALENY 159 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHHHHHHHH
Confidence 7899999999999998888888999999999999864322222222222211 1236899999999986521 12
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
+++.+.+.. .....++++++||++|.|+++++++|.+.+
T Consensus 160 ~~i~~~l~~--------------~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 160 RQIKEFIEG--------------TVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHh--------------cCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 233333332 112356899999999999999999998765
No 150
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.62 E-value=3.1e-15 Score=107.86 Aligned_cols=118 Identities=19% Similarity=0.227 Sum_probs=85.9
Q ss_pred ccCCCCCc--eeEEEECCEEEEEEEcCCChhhHH------hHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 10 HMPTLHPT--SEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 10 ~~pT~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~------~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
..|+.+.. ...+.+++..+.+|||||+..+.. .+..|+ .++|++++|+|+++. +....+...+...
T Consensus 32 ~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~- 107 (271)
T 3k53_A 32 NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEM- 107 (271)
T ss_dssp ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHT-
T ss_pred CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhc-
Confidence 44555543 566778889999999999877655 566777 789999999999864 3344455555432
Q ss_pred CCCCCcEEEEEeCCCcCC----cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 80 ALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 80 ~~~~~piilv~nK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
..+|+++|+||+|+.+ ......+.+.++ ++++++||++|.|++++++++.+.
T Consensus 108 --~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--------------------~~~~~~Sa~~g~gi~~l~~~i~~~ 163 (271)
T 3k53_A 108 --EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG--------------------VPVIPTNAKKGEGVEELKRMIALM 163 (271)
T ss_dssp --TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS--------------------SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred --CCCCEEEEEEChhcCcccccHHHHHHHHHHcC--------------------CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 2389999999999753 223333333333 479999999999999999998764
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.61 E-value=2.3e-15 Score=113.07 Aligned_cols=124 Identities=7% Similarity=-0.104 Sum_probs=91.0
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EE
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LI 88 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-il 88 (155)
.-+|++.....+++++.++++|||||++.|...+...++.+|++++|+| +. ..+.....++..+.. .++|. ++
T Consensus 44 ~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt~e~~~~~~~----~~i~~~iv 117 (370)
T 2elf_A 44 KGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHTGECIIALDL----LGFKHGII 117 (370)
T ss_dssp EEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHHHHHHHHHHH----TTCCEEEE
T ss_pred CCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHHHHHHHHHHH----cCCCeEEE
Confidence 3467777777788888999999999999998888888999999999999 43 445555555554432 24676 88
Q ss_pred EEe-CCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEE--eeecc---CCChHHHHHHHHhhc
Q psy2161 89 LGN-KIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFM--CSVLK---RQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~n-K~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i~~~~~~l~~~i 154 (155)
++| |+|+ +.... +++.+.+.. .....+++++ +||++ |.|+++++++|.+.+
T Consensus 118 vvNNK~Dl-~~~~~~~~~~~i~~~l~~--------------~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 118 ALTRSDST-HMHAIDELKAKLKVITSG--------------TVLQDWECISLNTNKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp EECCGGGS-CHHHHHHHHHHHHHHTTT--------------STTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHH
T ss_pred EEEeccCC-CHHHHHHHHHHHHHHHHh--------------cCCCceEEEecccccccCcCCCCHHHHHHHHHhhc
Confidence 999 9998 52111 233333332 1123578999 99999 999999999988764
No 152
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.61 E-value=1.3e-16 Score=122.27 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=77.9
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH-------HHHHHHhCCCCCCC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-------ELDSLLADDALTDV 84 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~-------~l~~~~~~~~~~~~ 84 (155)
+|+......++.+++++++|||||+..|...+..+++.+|++++|+|+++ .+|+.... .+..... ....
T Consensus 70 iTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~ 145 (435)
T 1jny_A 70 VTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT---MGLD 145 (435)
T ss_dssp -------CEEECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH---TTCT
T ss_pred ceeEeeEEEEecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH---cCCC
Confidence 56666667788888999999999999999999999999999999999988 55553322 2222111 1234
Q ss_pred cEEEEEeCCCcCCc-CC-------HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 85 PILILGNKIDIFDA-AS-------EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 85 piilv~nK~Dl~~~-~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
|+++++||+|+.+. .. .+++...+...+ +....+.++++||++|.|+.+
T Consensus 146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e 202 (435)
T 1jny_A 146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITH 202 (435)
T ss_dssp TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTB
T ss_pred eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCccccc
Confidence 79999999999752 11 123333332211 111247899999999999874
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.60 E-value=1.6e-14 Score=110.54 Aligned_cols=116 Identities=17% Similarity=0.112 Sum_probs=80.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+..++.++++|||||++.|...+..+++.+|++++|+|+++... .....++..... . ..+|+++|+||
T Consensus 91 Ti~~~~~~~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~-~--~~~~iIvviNK 166 (434)
T 1zun_B 91 TIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASL-L--GIKHIVVAINK 166 (434)
T ss_dssp CCCCEEEEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHH-T--TCCEEEEEEEC
T ss_pred EEEeeeeEeecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH-c--CCCeEEEEEEc
Confidence 3333445566678999999999999999999999999999999999987643 333444443322 1 23479999999
Q ss_pred CCcCCcCC------HHHHHhhhcccCccCCCccccccccc--CccEEEEEeeeccCCChHHH
Q psy2161 93 IDIFDAAS------EDEVRHFFGLYGLTTGKEFTSREILQ--MRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 93 ~Dl~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~~ 146 (155)
+|+.+... ..++...+.. .. ...++++++||++|.|+.++
T Consensus 167 ~Dl~~~~~~~~~~i~~~~~~~~~~--------------~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 167 MDLNGFDERVFESIKADYLKFAEG--------------IAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHHHT--------------TTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CcCCcccHHHHHHHHHHHHHHHHH--------------hCCCccCceEEEEeccCCCCcccc
Confidence 99865211 1122222222 12 23478999999999998873
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.60 E-value=1.1e-15 Score=117.62 Aligned_cols=112 Identities=15% Similarity=0.194 Sum_probs=74.4
Q ss_pred ceeEEEECCEEEEEEEcCCChhhHHhH--------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 17 TSEELSMGDIVFTTHDLGGHVQARRVW--------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 17 ~~~~~~~~~~~~~~~Dt~G~~~~~~~~--------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
....+.+++..+.+|||||.+.+...+ ..+++.+|++++|+|++++.+... ..++..+. .+|+++
T Consensus 263 ~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piiv 335 (462)
T 3geh_A 263 VESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLIL 335 (462)
T ss_dssp HHHEEEETTEEEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEE
T ss_pred EEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEE
Confidence 367788899999999999987654433 346889999999999998766644 44555542 369999
Q ss_pred EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
|+||+|+.+..... .... + ....+++++||++|.|++++++++.+.+
T Consensus 336 V~NK~Dl~~~~~~~----~~~~--------------~-~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 336 VMNKIDLVEKQLIT----SLEY--------------P-ENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp EEECTTSSCGGGST----TCCC--------------C-TTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCcchhhH----HHHH--------------h-ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999986522111 1111 0 1235789999999999999999998754
No 155
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.59 E-value=7.3e-15 Score=112.62 Aligned_cols=120 Identities=19% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCc---hH---HHHHHHHHHHhCCCCCCCc-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---FP---ESKYELDSLLADDALTDVP- 85 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~---~~---~~~~~l~~~~~~~~~~~~p- 85 (155)
|+......++.++.++.+|||||++.|...+..+++.||++++|+|+++... |+ .....+.... . .++|
T Consensus 82 Tid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-~---~~v~~ 157 (439)
T 3j2k_7 82 TVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-T---AGVKH 157 (439)
T ss_pred eEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-H---cCCCe
Confidence 4444566677888999999999999999999999999999999999987432 11 2222222221 1 2456
Q ss_pred EEEEEeCCCcCCc-CC---HH----HHHhhhcccCccCCCccccccccc-CccEEEEEeeeccCCChHHHHH
Q psy2161 86 ILILGNKIDIFDA-AS---ED----EVRHFFGLYGLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGFR 148 (155)
Q Consensus 86 iilv~nK~Dl~~~-~~---~~----~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~ 148 (155)
+++++||+|+.+. .. .+ ++...+...+ +. ...++++++||++|.|+.++.+
T Consensus 158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence 9999999998531 11 12 2222222211 11 1257899999999999998543
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.59 E-value=4.1e-15 Score=112.69 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=86.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN 91 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n 91 (155)
|++.....+..++.++.+|||||+..|...+..+++.+|++++|+|+++....+ ...++..+.. .++| +++++|
T Consensus 53 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~~~----~~vp~iivviN 127 (397)
T 1d2e_A 53 TINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ----IGVEHVVVYVN 127 (397)
T ss_dssp EEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCCEEEEEE
T ss_pred EEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCeEEEEEE
Confidence 444434445556799999999999999999999999999999999998754333 2333333322 2577 789999
Q ss_pred CCCcCCcC-----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC----------hHHHHHHHHhhcC
Q psy2161 92 KIDIFDAA-----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG----------FGNGFRWLANYID 155 (155)
Q Consensus 92 K~Dl~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------i~~~~~~l~~~i~ 155 (155)
|+|+.+.. ...++.+.+...+ +....++++++||++|.| +.++++++.+.++
T Consensus 128 K~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 128 KADAVQDSEMVELVELEIRELLTEFG------------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp CGGGCSCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred CcccCCCHHHHHHHHHHHHHHHHHcC------------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 99986411 1123333333211 111246899999999775 8899999987653
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=4.8e-15 Score=114.85 Aligned_cols=122 Identities=19% Similarity=0.097 Sum_probs=79.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCch------HHHHHHHHHHHhCCCCCCCcE
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~------~~~~~~l~~~~~~~~~~~~pi 86 (155)
|+......+..+++++.+|||||++.|...+..+++.+|++++|+|+++...+ ......+. ++.. ...+|+
T Consensus 98 Ti~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~--~~~~~i 174 (483)
T 3p26_A 98 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASS--LGIHNL 174 (483)
T ss_dssp SCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHH--TTCCCE
T ss_pred ceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHH--cCCCcE
Confidence 44445667777889999999999999999999999999999999999875432 12222222 2221 123579
Q ss_pred EEEEeCCCcCC--cCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 87 LILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 87 ilv~nK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
++|+||+|+.+ ....+++...+...- .........+.++++||++|.|+++
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l--------~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYL--------VDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHH--------HHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHH--------HHcCCCcccceEEEEeeecCCCccc
Confidence 99999999865 122222222222100 0000112367899999999999875
No 158
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.58 E-value=6.7e-15 Score=111.74 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=87.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEe
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGN 91 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~n 91 (155)
|+......+..++.++.+|||||+..|...+..+++.+|++++|+|+++... .....++..+.. .++| +++++|
T Consensus 62 Ti~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviN 136 (405)
T 2c78_A 62 TINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMN 136 (405)
T ss_dssp CCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEE
T ss_pred CEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEE
Confidence 3333344566667999999999999999999999999999999999987643 344555554432 2567 899999
Q ss_pred CCCcCCcCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCC------------------hHHHHH
Q psy2161 92 KIDIFDAAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG------------------FGNGFR 148 (155)
Q Consensus 92 K~Dl~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------i~~~~~ 148 (155)
|+|+.+... ..++.+.+...+ +....++++++||++|.| +.++++
T Consensus 137 K~Dl~~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~ 204 (405)
T 2c78_A 137 KVDMVDDPELLDLVEMEVRDLLNQYE------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLD 204 (405)
T ss_dssp CGGGCCCHHHHHHHHHHHHHHHHHTT------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHH
T ss_pred CccccCcHHHHHHHHHHHHHHHHHhc------------ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHH
Confidence 999864111 112333332211 111246799999999987 888888
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 205 ~l~~~l 210 (405)
T 2c78_A 205 AIDEYI 210 (405)
T ss_dssp HHHHHS
T ss_pred HHHhhc
Confidence 887755
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.57 E-value=4.3e-16 Score=121.61 Aligned_cols=121 Identities=15% Similarity=0.067 Sum_probs=85.3
Q ss_pred ceeEEEE-CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 17 TSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 17 ~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
....+.+ ++.+++||||||++.|..++..+++.+|++++|+|+++....... ..+.... ..++|+++++||+|+
T Consensus 42 ~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~-e~l~~~~----~~~vPiIVViNKiDl 116 (537)
T 3izy_P 42 GAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTV-ESIQHAK----DAHVPIVLAINKCDK 116 (537)
T ss_dssp TSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHH-HHHHHHH----TTTCCEEECCBSGGG
T ss_pred eEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHH-HHHHHHH----HcCCcEEEEEecccc
Confidence 3445555 457899999999999999999999999999999999886544333 3333332 136899999999998
Q ss_pred CCcC---CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 96 FDAA---SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 96 ~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.. ...++... ... .......++++++||++|.|++++++++...+
T Consensus 117 ~~~~~~~v~~~l~~~-~~~-----------~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 117 AEADPEKVKKELLAY-DVV-----------CEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp TTTSCCSSSSHHHHT-TSC-----------CCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred cccchHHHHHHHHhh-hhh-----------HHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 6521 11222221 110 00112357899999999999999999997653
No 160
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.56 E-value=7.9e-16 Score=118.80 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=68.0
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchH---HHHHHHHHHHhCCCCCC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFP---ESKYELDSLLADDALTD 83 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~---~~~~~l~~~~~~~~~~~ 83 (155)
.-+|++.....+.+++.++++|||||++.|...+..+++.+|++|+|+|+++. .+|+ .....+.... ..+
T Consensus 105 ~giTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~----~~~ 180 (467)
T 1r5b_A 105 KGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR----TQG 180 (467)
T ss_dssp --------CCEEECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH----HTT
T ss_pred cCceEEeeeEEEecCCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH----HcC
Confidence 34677777778888899999999999999999999999999999999999875 2222 1122222221 125
Q ss_pred Cc-EEEEEeCCCcCCc-CCHH-------HHHhhhccc-CccCCCccccccccc-CccEEEEEeeeccCCChHHHH
Q psy2161 84 VP-ILILGNKIDIFDA-ASED-------EVRHFFGLY-GLTTGKEFTSREILQ-MRPIELFMCSVLKRQGFGNGF 147 (155)
Q Consensus 84 ~p-iilv~nK~Dl~~~-~~~~-------~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~ 147 (155)
+| +++++||+|+.+. .+.+ ++...+... + +. ...+.++++||++|.|+.+++
T Consensus 181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence 66 9999999999641 1221 233333220 0 01 125789999999999988654
No 161
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.56 E-value=9.1e-14 Score=104.16 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=85.2
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCC---------hhhHHhHHhhcCCCCEEEEEEECCCCC--chHHHHHHHHHHHhC
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGH---------VQARRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDSLLAD 78 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~---------~~~~~~~~~~~~~ad~ii~v~D~~~~~--~~~~~~~~l~~~~~~ 78 (155)
..+|.++....+.+++..+.+|||+|. +.++..+. .++.||++++|+|++++. .......|.. ++..
T Consensus 210 ~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~-~L~~ 287 (364)
T 2qtf_A 210 LFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFE-ILRE 287 (364)
T ss_dssp ----CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHH-HHHH
T ss_pred cccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHH-HHHH
Confidence 457777888899999999999999996 33555544 578999999999998875 3333333322 2222
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCHHHHHhhh----cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDAASEDEVRHFF----GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
....++|+++|+||+|+.+.. ..+..... .. +......++++||++|.|++++++++.+.+
T Consensus 288 l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~--------------l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 288 IGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE--------------LYSPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp HTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH--------------HCSCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred hCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH--------------hcCCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 233578999999999986532 21111111 11 101234689999999999999999998754
No 162
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.55 E-value=4.3e-14 Score=103.44 Aligned_cols=116 Identities=9% Similarity=0.129 Sum_probs=79.6
Q ss_pred eeEEEECCEEEEEEEcCCCh-hh--------HHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 18 SEELSMGDIVFTTHDLGGHV-QA--------RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~-~~--------~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
...+..++.++.+|||||.. .. ......+++.+|++++|+|+++ +.....++.+.+.. .+.|+++
T Consensus 48 ~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~il 121 (301)
T 1ega_A 48 VGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVIL 121 (301)
T ss_dssp EEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEE
T ss_pred EEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEE
Confidence 44566778999999999987 32 2234567889999999999976 43334455554432 3689999
Q ss_pred EEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccE-EEEEeeeccCCChHHHHHHHHhhc
Q psy2161 89 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPI-ELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 89 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
++||+|+.. ....+...+... ....++ .++++||++|.|++++++++.+.+
T Consensus 122 vlNK~D~~~--~~~~~~~~l~~l-------------~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 122 AVNKVDNVQ--EKADLLPHLQFL-------------ASQMNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp EEESTTTCC--CHHHHHHHHHHH-------------HTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred EEECcccCc--cHHHHHHHHHHH-------------HHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 999999864 122222222210 001122 689999999999999999998765
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.55 E-value=1.6e-15 Score=116.75 Aligned_cols=122 Identities=20% Similarity=0.232 Sum_probs=78.1
Q ss_pred cccCCCCCc----eeEEEECCEEEEEEEcCC--------ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 9 QHMPTLHPT----SEELSMGDIVFTTHDLGG--------HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 9 ~~~pT~~~~----~~~~~~~~~~~~~~Dt~G--------~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
...++.|.+ ...+.+.+..+++||||| ++.++..+..++++||++++|+|+++. +.....++.+.+
T Consensus 50 ~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l 127 (456)
T 4dcu_A 50 IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREG--VTAADEEVAKIL 127 (456)
T ss_dssp -----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHH
T ss_pred ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHH
Confidence 344555554 334445678999999999 778888999999999999999998653 333445666665
Q ss_pred hCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 77 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 77 ~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. .++|+++|+||+|+.+.. ....+.... ..-..+++||++|.|+.++++++.+.+
T Consensus 128 ~~---~~~pvilV~NK~D~~~~~--~~~~e~~~l-----------------g~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 128 YR---TKKPVVLAVNKLDNTEMR--ANIYDFYSL-----------------GFGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp TT---CCSCEEEEEECC-----------CCSGGG-----------------SSSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred HH---cCCCEEEEEECccchhhh--hhHHHHHHc-----------------CCCceEEeecccccchHHHHHHHHhhc
Confidence 43 478999999999985321 111111111 011357999999999999999998754
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.52 E-value=1.6e-14 Score=114.20 Aligned_cols=119 Identities=14% Similarity=0.096 Sum_probs=78.0
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS-- 100 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~-- 100 (155)
..+++|||||+..|..++..+++.+|++|+|+|+++ +++++.+ ..+.. .++|+++++||+|+.....
T Consensus 70 ~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l----~~l~~----~~vPiIVViNKiDl~~~~~~~ 141 (594)
T 1g7s_A 70 PGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM----YRTPFVVAANKIDRIHGWRVH 141 (594)
T ss_dssp CEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH----HHHHH----TTCCEEEEEECGGGSTTCCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH----HHHHH----cCCeEEEEecccccccccccc
Confidence 369999999999999999999999999999999998 3344332 22221 3689999999999864211
Q ss_pred ------------HH-----------HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 ------------ED-----------EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 ------------~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.. ++...+...++...... ... -....++++++||++|.|++++++++...+
T Consensus 142 ~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~-~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~ 216 (594)
T 1g7s_A 142 EGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD-RVT-DFASQVSIIPISAITGEGIPELLTMLMGLA 216 (594)
T ss_dssp TTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGG-GCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHH-HHH-hccCcceEEEEeccCCCCchhHHHHHHhhc
Confidence 01 11111111010000000 000 012457899999999999999999988643
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.2e-14 Score=115.42 Aligned_cols=119 Identities=20% Similarity=0.152 Sum_probs=80.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---Cch---HHHHHHHHHHHhCCCCCCCcE
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRF---PESKYELDSLLADDALTDVPI 86 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~---~~~~~~l~~~~~~~~~~~~pi 86 (155)
|+......+..+++++++|||||++.|...+..+++.||++|+|+|+++. ..+ ......+... .. ....|+
T Consensus 232 Tid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~i 308 (611)
T 3izq_1 232 TVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNL 308 (611)
T ss_dssp CCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEE
T ss_pred eEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeE
Confidence 55556777888889999999999999999999999999999999999862 111 1122222222 21 223569
Q ss_pred EEEEeCCCcCCc--CCHHHHHh----hhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161 87 LILGNKIDIFDA--ASEDEVRH----FFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 87 ilv~nK~Dl~~~--~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
++|+||+|+.+. ....++.. .+...+ .....++++++||++|.|+.++
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCcccc
Confidence 999999998651 11222222 222100 1123578999999999999865
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.51 E-value=2.9e-15 Score=116.11 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=81.1
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCC---CchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~---~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
...+.+++.+++||||||+..|..++..+++.+|++++|+|+++. ++.+. +..... .++|+++++||+|
T Consensus 43 ~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~----l~~~~~----~~vPiIVviNKiD 114 (501)
T 1zo1_I 43 AYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA----IQHAKA----AQVPVVVAVNKID 114 (501)
T ss_dssp CCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH----HHHHHH----TTCCEEEEEECSS
T ss_pred EEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH----HHHHHh----cCceEEEEEEecc
Confidence 344556778999999999999999999999999999999999873 33332 222221 3689999999999
Q ss_pred cCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 95 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
+.+.. ...+...+...+. . .......++++++||++|.|++++++++..
T Consensus 115 l~~~~-~~~v~~~l~~~~~-------~-~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 115 KPEAD-PDRVKNELSQYGI-------L-PEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SSTTC-CCCTTCCCCCCCC-------C-TTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred ccccC-HHHHHHHHHHhhh-------h-HHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 86521 1111111111000 0 000112478999999999999999999875
No 167
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.50 E-value=5.7e-13 Score=107.16 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=65.6
Q ss_pred cccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEE
Q psy2161 9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILI 88 (155)
Q Consensus 9 ~~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piil 88 (155)
.+.+|++.....+.++++.+++|||||+..|...+..+++.+|++++|+|+++..+......|. .+.. .++|+++
T Consensus 60 ~~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~iv 134 (691)
T 1dar_A 60 ERGITITAAVTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIA 134 (691)
T ss_dssp -------CCEEEEEETTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEE
T ss_pred hcccccccceEEEEECCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEE
Confidence 3457888888888999999999999999999999999999999999999999877766554443 3322 2689999
Q ss_pred EEeCCCcCCc
Q psy2161 89 LGNKIDIFDA 98 (155)
Q Consensus 89 v~nK~Dl~~~ 98 (155)
|+||+|+...
T Consensus 135 viNKiD~~~~ 144 (691)
T 1dar_A 135 FANKMDKTGA 144 (691)
T ss_dssp EEECTTSTTC
T ss_pred EEECCCcccC
Confidence 9999998753
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.49 E-value=1.8e-13 Score=113.93 Aligned_cols=120 Identities=21% Similarity=0.241 Sum_probs=84.4
Q ss_pred eeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
...++.++.++++|||||+..|...+..+++.+|++|+|+|+++.... ....++..+.. .++| +++++||+|+.
T Consensus 351 ~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv 425 (1289)
T 3avx_A 351 HVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMV 425 (1289)
T ss_dssp CEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTC
T ss_pred EEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccc
Confidence 344555679999999999999999999999999999999999875433 33344443321 2577 89999999996
Q ss_pred CcCC-----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccC--------CChHHHHHHHHhhc
Q psy2161 97 DAAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR--------QGFGNGFRWLANYI 154 (155)
Q Consensus 97 ~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~i~~~~~~l~~~i 154 (155)
+... ..++...+...+ +....++++++||++| .|+.++++++.+.+
T Consensus 426 ~d~e~le~i~eEi~elLk~~G------------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 426 DDEELLELVEMEVRELLSQYD------------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT------------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cchhhHHHHHHHHHHHHHhcc------------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 4111 123333333211 1123468999999999 46899999988755
No 169
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.48 E-value=1.7e-14 Score=111.06 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=80.0
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---chH---HHHHHHHHHHhCCCCCCCc
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDSLLADDALTDVP 85 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~~---~~~~~l~~~~~~~~~~~~p 85 (155)
.|+......+..++.++++|||||++.|...+..+++.+|++|+|+|+++.. +|+ .....+..... .+.|
T Consensus 71 iTi~~~~~~~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~ 146 (458)
T 1f60_A 71 ITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVR 146 (458)
T ss_dssp CCCSCSCEEEECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCC
T ss_pred cEEEEEEEEEecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCC
Confidence 5666667788888899999999999999999999999999999999998641 221 22222222211 2454
Q ss_pred -EEEEEeCCCcCC--cCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHH
Q psy2161 86 -ILILGNKIDIFD--AASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGN 145 (155)
Q Consensus 86 -iilv~nK~Dl~~--~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 145 (155)
+++|+||+|+.+ .... .++...+...+ +....++++++||++|.|+.+
T Consensus 147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~ 201 (458)
T 1f60_A 147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIE 201 (458)
T ss_dssp EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTB
T ss_pred eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCccc
Confidence 999999999863 1111 12222222210 111246899999999999864
No 170
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=5.8e-15 Score=100.78 Aligned_cols=86 Identities=24% Similarity=0.409 Sum_probs=69.1
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCC----CCEEEEEEECC-CCCchHHHHHHHHHHHhCC---CCCCCcEEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVFIIDAS-DRSRFPESKYELDSLLADD---ALTDVPILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~----ad~ii~v~D~~-~~~~~~~~~~~l~~~~~~~---~~~~~piilv~nK~Dl 95 (155)
.+..+.+|||||+..+...+..+++. +|++++|+|++ ++.++.....|+..++... ...+.|+++|+||+|+
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 56889999999999887777777776 89999999999 7888888888888776432 2247899999999999
Q ss_pred CCcCCHHHHHhhhc
Q psy2161 96 FDAASEDEVRHFFG 109 (155)
Q Consensus 96 ~~~~~~~~i~~~~~ 109 (155)
.+.....++...+.
T Consensus 169 ~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 169 FTARPPSKIKDALE 182 (193)
T ss_dssp TTCCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH
Confidence 87666666655544
No 171
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.47 E-value=2.2e-13 Score=104.47 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=79.1
Q ss_pred CceeEEEECCEEEEEEEcCCChhhHHh------------HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCC
Q psy2161 16 PTSEELSMGDIVFTTHDLGGHVQARRV------------WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTD 83 (155)
Q Consensus 16 ~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (155)
.....+.++|..+.+|||+|.++.... ...+++.+|++++|+|+++..+.... ++...+.. .+
T Consensus 218 ~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~ 292 (439)
T 1mky_A 218 PVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RG 292 (439)
T ss_dssp -CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TT
T ss_pred ceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cC
Confidence 345678889999999999998543322 13467789999999999876665442 23233222 36
Q ss_pred CcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 84 VPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 84 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
+|+++|+||+|+.+. ....++...+... .......+++++||++|.|++++++.+.+.
T Consensus 293 ~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~ 352 (439)
T 1mky_A 293 RASVVVFNKWDLVVHREKRYDEFTKLFREK------------LYFIDYSPLIFTSADKGWNIDRMIDAMNLA 352 (439)
T ss_dssp CEEEEEEECGGGSTTGGGCHHHHHHHHHHH------------CGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEECccCCCchhhHHHHHHHHHHHH------------hccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 899999999998652 2233333222110 011123578999999999999999998764
No 172
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.46 E-value=5.8e-13 Score=104.14 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.++++.+++|||||+..|...+..+++.+|++|+|+|+++..... ...++... . ..++|+++++||
T Consensus 69 Ti~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~-~---~~~ipiivviNK 143 (529)
T 2h5e_A 69 SITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT-R---LRDTPILTFMNK 143 (529)
T ss_dssp -CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH-T---TTTCCEEEEEEC
T ss_pred ceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH-H---HcCCCEEEEEcC
Confidence 333446778889999999999999999988889999999999999998754322 22333333 1 246899999999
Q ss_pred CCcCCc
Q psy2161 93 IDIFDA 98 (155)
Q Consensus 93 ~Dl~~~ 98 (155)
+|+.+.
T Consensus 144 ~Dl~~~ 149 (529)
T 2h5e_A 144 LDRDIR 149 (529)
T ss_dssp TTSCCS
T ss_pred cCCccc
Confidence 999764
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.45 E-value=2.3e-13 Score=98.93 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=74.8
Q ss_pred CEEEEEEEcCCCh-------------hhHHhHHhhcCCCCEEE-EEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 25 DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV-FIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~ad~ii-~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
+..+.+|||||.. .+..++..|++.++.++ +|+|+++.........++..+. ..+.|+++|+
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V~ 199 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI 199 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEEE
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEEE
Confidence 4789999999952 46678889999998776 7999987544433334444442 2468999999
Q ss_pred eCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 91 NKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 91 nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
||+|+.+... ...+...+.. .......++++||++|.|++++++++.+
T Consensus 200 NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 200 TKLDLMDEGTDARDVLENKLLP--------------LRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp ECGGGSCTTCCCHHHHTTCSSC--------------CTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred EccccCCCCchHHHHHhCCcCc--------------CCCCcEEEECCChhhccccccHHHHHHH
Confidence 9999875322 2221111000 1112347889999999999999999865
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.44 E-value=1e-14 Score=115.40 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=65.7
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCC---ch---HHHHHHHHHHHhCCCCCCCc-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDSLLADDALTDVP- 85 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~---~~---~~~~~~l~~~~~~~~~~~~p- 85 (155)
|+......+.+++.++.||||||+..|...+..+++.+|++|+|+|+++.. .+ ......+..+.. .++|
T Consensus 242 Tid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~ 317 (592)
T 3mca_A 242 TMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISE 317 (592)
T ss_dssp -----------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCC
T ss_pred eEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCe
Confidence 444456667777899999999999999988889999999999999998532 11 111222222211 1454
Q ss_pred EEEEEeCCCcCC--cCC----HHHHHhhh-cccCccCCCcccccccccCccEEEEEeeeccCCChH--------------
Q psy2161 86 ILILGNKIDIFD--AAS----EDEVRHFF-GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG-------------- 144 (155)
Q Consensus 86 iilv~nK~Dl~~--~~~----~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~-------------- 144 (155)
+++|+||+|+.+ ... ..++...+ ...+ +....++++++||++|.|+.
T Consensus 318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~ 385 (592)
T 3mca_A 318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGP 385 (592)
T ss_dssp EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSC
T ss_pred EEEEEeccccccccHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchH
Confidence 999999999864 111 12333333 2111 12246789999999999998
Q ss_pred HHHHHHHhhc
Q psy2161 145 NGFRWLANYI 154 (155)
Q Consensus 145 ~~~~~l~~~i 154 (155)
.+++.|...+
T Consensus 386 ~Lle~l~~~~ 395 (592)
T 3mca_A 386 TLLSALDQLV 395 (592)
T ss_dssp CHHHHHHTSC
T ss_pred HHHHHHHhhc
Confidence 7888876644
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.43 E-value=2.9e-12 Score=102.74 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=62.1
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.++++.+++|||||+..|...+..+++.+|++++|+|+++..... ...++..... .++|+++|+||
T Consensus 61 ti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NK 135 (665)
T 2dy1_A 61 TVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTK 135 (665)
T ss_dssp CCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEEC
T ss_pred eEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecC
Confidence 444456667778899999999999999999999999999999999987654432 2344444432 26899999999
Q ss_pred CCcC
Q psy2161 93 IDIF 96 (155)
Q Consensus 93 ~Dl~ 96 (155)
+|+.
T Consensus 136 iD~~ 139 (665)
T 2dy1_A 136 LDKG 139 (665)
T ss_dssp GGGC
T ss_pred Cchh
Confidence 9986
No 176
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.43 E-value=4.2e-13 Score=95.93 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=77.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhh-----------HHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQA-----------RRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDA 80 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~ 80 (155)
|.......+.+++.++.+|||||...+ ......+++++|++++|+|+++.... ..+..++.......
T Consensus 58 t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~- 136 (260)
T 2xtp_A 58 TKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED- 136 (260)
T ss_dssp CCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred eeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence 444456677888999999999997543 23344578999999999999863222 22234444443211
Q ss_pred CCCCcEEEEEe-CCCcCCcCCHHH---------HHhhhcccCccCCCcccccccccCccEEE--EEeeeccCCChHHHHH
Q psy2161 81 LTDVPILILGN-KIDIFDAASEDE---------VRHFFGLYGLTTGKEFTSREILQMRPIEL--FMCSVLKRQGFGNGFR 148 (155)
Q Consensus 81 ~~~~piilv~n-K~Dl~~~~~~~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~~i~~~~~ 148 (155)
...|.++|+| |+|+.+. .... +...+.. +......+ +++||++|.|++++|+
T Consensus 137 -~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~SA~~~~gv~~l~~ 200 (260)
T 2xtp_A 137 -AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA--------------CGGRICAFNNRAEGSNQDDQVKELMD 200 (260)
T ss_dssp -GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH--------------TTTCEEECCTTCCHHHHHHHHHHHHH
T ss_pred -hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH--------------hCCeEEEecCcccccccHHHHHHHHH
Confidence 1346666666 9998743 2222 1111111 11111112 7899999999999999
Q ss_pred HHHhhc
Q psy2161 149 WLANYI 154 (155)
Q Consensus 149 ~l~~~i 154 (155)
++.+.+
T Consensus 201 ~i~~~~ 206 (260)
T 2xtp_A 201 CIEDLL 206 (260)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
No 177
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.43 E-value=3.6e-12 Score=102.68 Aligned_cols=81 Identities=16% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCCCCceeEEEECC-------EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC
Q psy2161 12 PTLHPTSEELSMGD-------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84 (155)
Q Consensus 12 pT~~~~~~~~~~~~-------~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (155)
+|+......+.+++ +.+++|||||+..|...+..+++.+|++|+|+|+++.........| ..... .++
T Consensus 61 iTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~----~~i 135 (704)
T 2rdo_7 61 ITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK----YKV 135 (704)
T ss_pred ceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH----cCC
Confidence 45555556777776 9999999999999999999999999999999999876554433333 33321 368
Q ss_pred cEEEEEeCCCcCC
Q psy2161 85 PILILGNKIDIFD 97 (155)
Q Consensus 85 piilv~nK~Dl~~ 97 (155)
|+++|+||+|+..
T Consensus 136 p~ilviNKiD~~~ 148 (704)
T 2rdo_7 136 PRIAFVNKMDRMG 148 (704)
T ss_pred CEEEEEeCCCccc
Confidence 9999999999865
No 178
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.43 E-value=2e-13 Score=98.54 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=66.5
Q ss_pred cCCCCCceeEEEE--CC--EEEEEEEcCCC-------hhhHHhH-------HhhcC-------------CCCEEEEEEEC
Q psy2161 11 MPTLHPTSEELSM--GD--IVFTTHDLGGH-------VQARRVW-------RDYFP-------------AVDAIVFIIDA 59 (155)
Q Consensus 11 ~pT~~~~~~~~~~--~~--~~~~~~Dt~G~-------~~~~~~~-------~~~~~-------------~ad~ii~v~D~ 59 (155)
.||++........ ++ +++++|||||. ..+...+ ..|++ .+|+++++++.
T Consensus 46 ~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~ 125 (274)
T 3t5d_A 46 KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAP 125 (274)
T ss_dssp ---CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECS
T ss_pred CCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecC
Confidence 6888887555544 44 69999999997 2233333 34443 37899999987
Q ss_pred CCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc
Q psy2161 60 SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK 139 (155)
Q Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 139 (155)
+.......-..++..+. . .+|+++|+||+|+............+.. .+...++.++.+||++
T Consensus 126 ~~~~~~~~d~~~l~~l~-~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~-------------~l~~~~i~v~~~sa~~ 187 (274)
T 3t5d_A 126 SGHGLKPLDIEFMKRLH-E----KVNIIPLIAKADTLTPEECQQFKKQIMK-------------EIQEHKIKIYEFPETD 187 (274)
T ss_dssp CCSSCCHHHHHHHHHHT-T----TSCEEEEESSGGGSCHHHHHHHHHHHHH-------------HHHHTTCCCCCC----
T ss_pred CCCCCCHHHHHHHHHHh-c----cCCEEEEEeccCCCCHHHHHHHHHHHHH-------------HHHHcCCeEEcCCCCC
Confidence 65322222234445542 2 6899999999998542111111111111 1122456788899999
Q ss_pred CCChHHHHHHHHhhcC
Q psy2161 140 RQGFGNGFRWLANYID 155 (155)
Q Consensus 140 ~~~i~~~~~~l~~~i~ 155 (155)
+.|+++++++|.+.+|
T Consensus 188 ~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 188 DEEENKLVKKIKDRLP 203 (274)
T ss_dssp -------CHHHHHTCS
T ss_pred ChhHHHHHHHHhcCCC
Confidence 9999999999988764
No 179
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.43 E-value=1.3e-13 Score=100.95 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=73.4
Q ss_pred ChhhHHhHHhhcCCCCEEEEEEECCCCC-chHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--C-HHHHHhhhccc
Q psy2161 36 HVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--S-EDEVRHFFGLY 111 (155)
Q Consensus 36 ~~~~~~~~~~~~~~ad~ii~v~D~~~~~-~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~-~~~i~~~~~~~ 111 (155)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.. . ..+..+.+..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~- 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD- 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH-
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH-
Confidence 5666777778999999999999999885 88878888876643 478999999999986421 1 1222222222
Q ss_pred CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.++.++++||++|.|++++++.+...
T Consensus 141 ----------------~g~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 141 ----------------AGYDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp ----------------TTCEEEECCTTTCTTHHHHHHHTTTC
T ss_pred ----------------CCCeEEEEECCCCCCHHHHHhhccCc
Confidence 24589999999999999999987643
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.41 E-value=3.1e-12 Score=102.96 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=64.9
Q ss_pred ccCCCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 10 ~~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv 89 (155)
..+|+......+.++++++++|||||+..+...+..+++.+|++++|+|+++..+......| ..+.. .++|+++|
T Consensus 59 ~giTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilv 133 (693)
T 2xex_A 59 RGITITSAATTAAWEGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVF 133 (693)
T ss_dssp -----CCSEEEEEETTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEE
T ss_pred cCceEeeeeEEEEECCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEE
Confidence 34577777788889999999999999999988899999999999999999987666554444 33332 26899999
Q ss_pred EeCCCcCC
Q psy2161 90 GNKIDIFD 97 (155)
Q Consensus 90 ~nK~Dl~~ 97 (155)
+||+|+..
T Consensus 134 iNK~Dl~~ 141 (693)
T 2xex_A 134 VNKMDKLG 141 (693)
T ss_dssp EECTTSTT
T ss_pred EECCCccc
Confidence 99999876
No 181
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=90.43 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=57.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCC-----------ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA- 80 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G-----------~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~- 80 (155)
|.......+.+++..+.+||||| .+.+...+..+++++|++++|+|+++.... ...++..++....
T Consensus 65 t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~ 142 (239)
T 3lxx_A 65 TKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE 142 (239)
T ss_dssp CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred eeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence 34444667788899999999999 345667777788899999999999764442 2233333321110
Q ss_pred CCCCcEEEEEeCCCcCC
Q psy2161 81 LTDVPILILGNKIDIFD 97 (155)
Q Consensus 81 ~~~~piilv~nK~Dl~~ 97 (155)
....|+++|+||+|+.+
T Consensus 143 ~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 143 RARSFMILIFTRKDDLG 159 (239)
T ss_dssp HHGGGEEEEEECGGGC-
T ss_pred hccceEEEEEeCCccCC
Confidence 02369999999999864
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.33 E-value=2.6e-11 Score=83.61 Aligned_cols=124 Identities=19% Similarity=0.170 Sum_probs=73.9
Q ss_pred CcccCCCCCc--eeEEEECCEEEEEEEcCCCh----------hhHHhHHhhc---CCCCEEEEEEECCCCCchHH--HHH
Q psy2161 8 AQHMPTLHPT--SEELSMGDIVFTTHDLGGHV----------QARRVWRDYF---PAVDAIVFIIDASDRSRFPE--SKY 70 (155)
Q Consensus 8 ~~~~pT~~~~--~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~---~~ad~ii~v~D~~~~~~~~~--~~~ 70 (155)
..+.||.|.. ...+.+++ .+.+|||||.. .++.....++ +.++++++++|++.+.+... +..
T Consensus 53 ~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~ 131 (210)
T 1pui_A 53 ARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIE 131 (210)
T ss_dssp ----------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHH
T ss_pred ccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHH
Confidence 4456777765 33444544 68899999973 2343344444 57899999999988655532 223
Q ss_pred HHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHH
Q psy2161 71 ELDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146 (155)
Q Consensus 71 ~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~ 146 (155)
|+.. .+.|+++++||+|+...-. ...+...+.. ....+.++++||+++.|++++
T Consensus 132 ~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~Sal~~~~~~~l 189 (210)
T 1pui_A 132 WAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLA---------------FNGDVQVETFSSLKKQGVDKL 189 (210)
T ss_dssp HHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---------------GCSCEEEEECBTTTTBSHHHH
T ss_pred HHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---------------cCCCCceEEEeecCCCCHHHH
Confidence 3221 3689999999999754211 1222222221 112467899999999999999
Q ss_pred HHHHHhhc
Q psy2161 147 FRWLANYI 154 (155)
Q Consensus 147 ~~~l~~~i 154 (155)
++++.+.+
T Consensus 190 ~~~l~~~~ 197 (210)
T 1pui_A 190 RQKLDTWF 197 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 183
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.31 E-value=5.7e-11 Score=93.31 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.|++++++++||||+..|..-....++-+|++|+|+|+...-.-.....| ..... .++|.++++||
T Consensus 87 TI~s~~~~~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK 161 (548)
T 3vqt_A 87 SVTTSVMQFPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNK 161 (548)
T ss_dssp -CTTTEEEEEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEEC
T ss_pred cEeeceEEEEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEec
Confidence 55556788999999999999999999999999999999999999999875443333333 33332 36899999999
Q ss_pred CCcCCcC---CHHHHHhhhc
Q psy2161 93 IDIFDAA---SEDEVRHFFG 109 (155)
Q Consensus 93 ~Dl~~~~---~~~~i~~~~~ 109 (155)
+|..... ..+++.+.+.
T Consensus 162 ~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 162 MDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp TTSCCCCHHHHHHHHHHHHT
T ss_pred ccchhcchhHhhhhhhhhcC
Confidence 9986532 3345555443
No 184
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.27 E-value=2e-11 Score=86.88 Aligned_cols=85 Identities=8% Similarity=0.056 Sum_probs=55.4
Q ss_pred CCCCCceeEEEECCEEEEEEEcCCC--------hhhHHhHHhh----cCCCCEEEEEEECCCCCchH-HHHHHHHHHHhC
Q psy2161 12 PTLHPTSEELSMGDIVFTTHDLGGH--------VQARRVWRDY----FPAVDAIVFIIDASDRSRFP-ESKYELDSLLAD 78 (155)
Q Consensus 12 pT~~~~~~~~~~~~~~~~~~Dt~G~--------~~~~~~~~~~----~~~ad~ii~v~D~~~~~~~~-~~~~~l~~~~~~ 78 (155)
+|.......+..++.++.+|||||. +.+......+ .+++|++++|+|+++....+ .+..++.+...
T Consensus 56 ~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~- 134 (247)
T 3lxw_A 56 VTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG- 134 (247)
T ss_dssp -CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-
T ss_pred ccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-
Confidence 4555556778889999999999995 2232223333 38999999999997532221 22334444321
Q ss_pred CCCCCCcEEEEEeCCCcCC
Q psy2161 79 DALTDVPILILGNKIDIFD 97 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~ 97 (155)
....+.|+++++||.|+.+
T Consensus 135 ~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 135 EDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp GGGGGGEEEEEECGGGGTT
T ss_pred hhhhccEEEEEEchHhcCC
Confidence 1223679999999999965
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.27 E-value=1.6e-11 Score=93.42 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=84.3
Q ss_pred CCCCCceeEEEECC-EEEEEEEcCCChh----hH---HhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-CCC
Q psy2161 12 PTLHPTSEELSMGD-IVFTTHDLGGHVQ----AR---RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-ALT 82 (155)
Q Consensus 12 pT~~~~~~~~~~~~-~~~~~~Dt~G~~~----~~---~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-~~~ 82 (155)
+|...+...+.+++ ..+.+||+||... +. ......++.++.+++++|++ ...+..+..+..++.... .+.
T Consensus 190 tTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~ 268 (416)
T 1udx_A 190 TTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALL 268 (416)
T ss_dssp CSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHH
T ss_pred ceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhh
Confidence 34555666677776 8999999999632 11 11222356799999999998 566666666665554321 123
Q ss_pred CCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..|.++|+||+|+........+...+. ..++.++.+||+++.|++++++++.+.+
T Consensus 269 ~~P~ILVlNKlDl~~~~~~~~l~~~l~-----------------~~g~~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 269 RRPSLVALNKVDLLEEEAVKALADALA-----------------REGLAVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp HSCEEEEEECCTTSCHHHHHHHHHHHH-----------------TTTSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cCCEEEEEECCChhhHHHHHHHHHHHH-----------------hcCCeEEEEECCCccCHHHHHHHHHHHH
Confidence 579999999999865311122222222 2345799999999999999999998764
No 186
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.27 E-value=5.7e-13 Score=99.75 Aligned_cols=117 Identities=10% Similarity=0.124 Sum_probs=55.0
Q ss_pred CCCCCceeEE--EECC--EEEEEEEcCCC-------hhhHHhHH-------hhcCCC-------------CEEEEEEECC
Q psy2161 12 PTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQARRVWR-------DYFPAV-------------DAIVFIIDAS 60 (155)
Q Consensus 12 pT~~~~~~~~--~~~~--~~~~~~Dt~G~-------~~~~~~~~-------~~~~~a-------------d~ii~v~D~~ 60 (155)
||++.....+ ..++ ..+++|||||. +.+..++. .|++++ ++++|+++.+
T Consensus 77 ~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~ 156 (361)
T 2qag_A 77 RTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 156 (361)
T ss_dssp -CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS
T ss_pred CceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC
Confidence 5666543333 3344 58999999998 55555554 555543 3455665542
Q ss_pred CCCchHHHH-HHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEe
Q psy2161 61 DRSRFPESK-YELDSLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMC 135 (155)
Q Consensus 61 ~~~~~~~~~-~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (155)
..++.... .++..+ . .++|+++|+||+|+...... .++...+ ...++.++++
T Consensus 157 -~~~l~~~d~~~~~~l-~----~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~-----------------~~~~i~~~~~ 213 (361)
T 2qag_A 157 -GHGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLTLKERERLKKRILDEI-----------------EEHNIKIYHL 213 (361)
T ss_dssp -SSSCCHHHHHHHHHT-C----S-SCEEEEEECCSSSCHHHHHHHHHHHHHHT-----------------TCC-CCSCCC
T ss_pred -CCCcchhHHHHHHHh-c----cCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-----------------HHCCCCEEeC
Confidence 34555554 344433 1 46899999999998642111 1222222 2245688999
Q ss_pred eeccCCChHHHHHHHHh
Q psy2161 136 SVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 136 Sa~~~~~i~~~~~~l~~ 152 (155)
||++|.| ++.|.++.+
T Consensus 214 Sa~~~~~-~e~~~~l~~ 229 (361)
T 2qag_A 214 PDAESDE-DEDFKEQTR 229 (361)
T ss_dssp C----------CHHHHH
T ss_pred CCcCCCc-chhHHHHHH
Confidence 9999998 666666554
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.23 E-value=2.1e-11 Score=89.27 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCEEEEEEEcCCChh-------------hHHhHHhhcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEE
Q psy2161 24 GDIVFTTHDLGGHVQ-------------ARRVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILIL 89 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~-------------~~~~~~~~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv 89 (155)
++.++.+|||||... +...+..+++.+|++++|+|+++.... .....++..+ . ..+.|+++|
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v 204 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGV 204 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEE
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEE
Confidence 447899999999643 567788899999999999997433211 1112233333 2 236899999
Q ss_pred EeCCCcCCcCC--HHHHHhhhcccCccCCCcccccccccCccEEEEEeeecc---CCChHHHHHHHHhhc
Q psy2161 90 GNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLK---RQGFGNGFRWLANYI 154 (155)
Q Consensus 90 ~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~l~~~i 154 (155)
+||+|+.+... ...+...+.. ......+++.+|+.+ +.|+.++++.+.+.+
T Consensus 205 ~NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 205 ITKLDLMDKGTDAMEVLTGRVIP--------------LTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp EECTTSSCSSCCCHHHHTTSSSC--------------CTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred EcCcccCCcchHHHHHHhCCCcc--------------CCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 99999865322 2222211100 111223455667777 889999998876543
No 188
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.22 E-value=3.5e-11 Score=96.93 Aligned_cols=117 Identities=19% Similarity=0.263 Sum_probs=76.4
Q ss_pred EEEEEEEcCCChh---hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC--C
Q psy2161 26 IVFTTHDLGGHVQ---ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA--S 100 (155)
Q Consensus 26 ~~~~~~Dt~G~~~---~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~--~ 100 (155)
..+.+|||||... ....+..++++||++++|+|++++.+......|...+ .. .+.|+++|+||+|+.... +
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~~~~~~ 249 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVRESLID 249 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGGGGCSS
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECcccccccccC
Confidence 3699999999765 3456778899999999999998877776654443333 21 267899999999986421 1
Q ss_pred HH----------HHHhh----hcccCccCCCcccccccccCccEEEEEeeec--------------cCCChHHHHHHHHh
Q psy2161 101 ED----------EVRHF----FGLYGLTTGKEFTSREILQMRPIELFMCSVL--------------KRQGFGNGFRWLAN 152 (155)
Q Consensus 101 ~~----------~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~--------------~~~~i~~~~~~l~~ 152 (155)
.+ .+... +.... ....+......+++|||+ +|.|++++++++.+
T Consensus 250 ~ee~e~l~~~~~~i~~~~~~~l~~~~--------~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~ 321 (695)
T 2j69_A 250 PDDVEELQASENRLRQVFNANLAEYC--------TVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNT 321 (695)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHGGGG--------BSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhh--------cccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHH
Confidence 11 12111 11100 000000122358999999 99999999999876
Q ss_pred hc
Q psy2161 153 YI 154 (155)
Q Consensus 153 ~i 154 (155)
.+
T Consensus 322 ~l 323 (695)
T 2j69_A 322 FL 323 (695)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 189
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.22 E-value=6.3e-12 Score=89.70 Aligned_cols=127 Identities=16% Similarity=0.158 Sum_probs=70.0
Q ss_pred EEEEEEEcCCChhhHHhH------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcC
Q psy2161 26 IVFTTHDLGGHVQARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA 99 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~ 99 (155)
+.+.+|||||+....... ...+.. +++++++|++......................++|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 689999999997654321 134566 8999999986543333222111111100011257999999999986532
Q ss_pred CHHHHHhhhcccC-cc------C--CCcc--cc---cccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 100 SEDEVRHFFGLYG-LT------T--GKEF--TS---REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 100 ~~~~i~~~~~~~~-~~------~--~~~~--~~---~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...++.+.+.... +. + .+.. .+ .... .....++++||++|.|++++++++.+.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 2222222211000 00 0 0000 00 0000 1224689999999999999999998754
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.17 E-value=2.8e-11 Score=90.38 Aligned_cols=110 Identities=13% Similarity=0.048 Sum_probs=70.0
Q ss_pred ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCH-
Q psy2161 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASE- 101 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~- 101 (155)
..++.+.+|||||.... ....+..+|++++|+|.+....+..++ ......|+++|+||+|+.+....
T Consensus 169 ~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivVlNK~Dl~~~~~~~ 236 (355)
T 3p32_A 169 AAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVVVNKADGEHHKEAR 236 (355)
T ss_dssp HTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEEEECCCGGGHHHHH
T ss_pred hCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEEEECCCCcChhHHH
Confidence 36789999999995432 223358899999999987654442211 11234699999999998642222
Q ss_pred ---HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 ---DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++...+..... .......+++.+||++|.|++++++++.+.+
T Consensus 237 ~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 237 LAARELSAAIRLIYP----------REALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp HHHHHHHHHHHHHST----------TCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccc----------cccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 122222211000 0001134689999999999999999998754
No 191
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.13 E-value=4e-11 Score=89.95 Aligned_cols=102 Identities=22% Similarity=0.259 Sum_probs=68.6
Q ss_pred CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC-cCCHHHHHhhhcccC
Q psy2161 34 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYG 112 (155)
Q Consensus 34 ~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~~~~~~ 112 (155)
..+++|++.+.++++.++++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+ ....+.+.+.+...
T Consensus 54 ~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~- 125 (368)
T 3h2y_A 54 LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYS- 125 (368)
T ss_dssp --CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHH-
Confidence 356889999999999999999999998742 2333333221 13789999999999965 33344444432210
Q ss_pred ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..........++.+||++|.|++++++++.+
T Consensus 126 ---------~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 126 ---------AKQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp ---------HHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ---------HHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 0001111237899999999999999999865
No 192
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.11 E-value=1.3e-10 Score=83.24 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhc---------CCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC-
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF---------PAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL- 81 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~---------~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~- 81 (155)
|.......+.+++..+++|||||+..+......++ .++|++++|+|++... +... ..|+..+......
T Consensus 71 t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~ 149 (262)
T 3def_A 71 GLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKE 149 (262)
T ss_dssp CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGG
T ss_pred ceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchh
Confidence 44445677788999999999999865533222222 2789999999987654 4333 3555555432111
Q ss_pred CCCcEEEEEeCCCcC
Q psy2161 82 TDVPILILGNKIDIF 96 (155)
Q Consensus 82 ~~~piilv~nK~Dl~ 96 (155)
...|+++|+||+|+.
T Consensus 150 ~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 150 IWCKTLLVLTHAQFS 164 (262)
T ss_dssp GGGGEEEEEECTTCC
T ss_pred hhcCEEEEEeCcccC
Confidence 124999999999985
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.09 E-value=1.5e-10 Score=86.36 Aligned_cols=111 Identities=16% Similarity=0.099 Sum_probs=68.3
Q ss_pred CEEEEEEEcCCCh-------------hhHHhHHhhcCCCCEEE-EEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 25 DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV-FIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~~~ad~ii-~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
+..+.+|||||.. .+..+...|++.++.++ +|+|++....-.....++..+. ..+.|+++|+
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~ 204 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVI 204 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEE
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEe
Confidence 4789999999952 45677888887766554 4566654222122223444432 2468999999
Q ss_pred eCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 91 NKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 91 nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
||+|+.+... ...+.+. ... ........++.+||++|.|++++++++.+
T Consensus 205 NK~Dl~~~~~~~~~~~~~-~~~------------~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 205 TKLDLMDEGTDARDVLEN-KLL------------PLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp ECGGGSCTTCCCHHHHTT-CSS------------CCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccccccCcchhHHHHHhC-Ccc------------cccCCceEEEeCCcccccccccHHHHHHH
Confidence 9999865322 1122110 000 01112246789999999999999998865
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.09 E-value=2.4e-10 Score=93.80 Aligned_cols=80 Identities=16% Similarity=0.177 Sum_probs=64.3
Q ss_pred CCCCCceeEEEEC----------------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 12 PTLHPTSEELSMG----------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 12 pT~~~~~~~~~~~----------------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
.|++.....+.++ ++.+++|||||+..|...+..+++.+|++|+|+|+++..++.....|....
T Consensus 68 iTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~ 147 (842)
T 1n0u_A 68 ITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL 147 (842)
T ss_dssp CCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH
T ss_pred eeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 4666655555554 589999999999999999999999999999999999887776655444322
Q ss_pred HhCCCCCCCcEEEEEeCCCcC
Q psy2161 76 LADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 76 ~~~~~~~~~piilv~nK~Dl~ 96 (155)
. .++|+++|+||+|+.
T Consensus 148 -~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 148 -G----ERIKPVVVINKVDRA 163 (842)
T ss_dssp -H----TTCEEEEEEECHHHH
T ss_pred -H----cCCCeEEEEECCCcc
Confidence 2 368999999999986
No 195
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.07 E-value=2.4e-10 Score=82.83 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=66.0
Q ss_pred EEEcCCCh-hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhh
Q psy2161 30 THDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 108 (155)
Q Consensus 30 ~~Dt~G~~-~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~ 108 (155)
+-..||+. +........++.+|++++|+|+.+|.+... ..+...+ .++|.++|+||+|+.+....+...+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34568886 455566677899999999999998866642 1233332 478999999999996521122233333
Q ss_pred cccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 109 GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.. .++.++.+||++|.|+.++++.+.+.
T Consensus 76 ~~-----------------~g~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 EN-----------------QGIRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HT-----------------TTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred Hh-----------------cCCcEEEEECCCcccHHHHHHHHHHH
Confidence 22 23478899999999999998887654
No 196
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.07 E-value=9.9e-11 Score=87.87 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=67.9
Q ss_pred CCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHHHHhhhcccC
Q psy2161 34 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYG 112 (155)
Q Consensus 34 ~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~i~~~~~~~~ 112 (155)
..+++|++.+.+++++++++++|+|++++.+. ....+...+ .++|+++|+||+|+.+. ...+.+.+.+...
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s--~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~- 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGS--FIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRM- 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGGG--CCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCCc--hhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHH-
Confidence 35788999999999999999999999986531 111122221 37899999999999653 3344444433210
Q ss_pred ccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 113 LTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
..........++.+||++|.|++++++.+.+
T Consensus 128 ---------~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~ 158 (369)
T 3ec1_A 128 ---------AEELGLCPVDVCLVSAAKGIGMAKVMEAINR 158 (369)
T ss_dssp ---------HHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred ---------HHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence 0001111237899999999999999999865
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.06 E-value=1.5e-10 Score=92.41 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=90.7
Q ss_pred CCCCceeEEEECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 13 T~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
|+......+.+++++++++||||+..|.......++-+|++|+|+|+...-.-.. ...+..... .++|.++++||
T Consensus 54 TI~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~----~~lp~i~~INK 128 (638)
T 3j25_A 54 TIQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK----MGIPTIFFINK 128 (638)
T ss_dssp CSSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH----HTCSCEECCEE
T ss_pred cEEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCeEEEEec
Confidence 4444567788899999999999999999999999999999999999976422222 222333322 25899999999
Q ss_pred CCcCCcC---CHHHHHhhhcccCccCCCc---------cc---------------ccc--------------------cc
Q psy2161 93 IDIFDAA---SEDEVRHFFGLYGLTTGKE---------FT---------------SRE--------------------IL 125 (155)
Q Consensus 93 ~Dl~~~~---~~~~i~~~~~~~~~~~~~~---------~~---------------~~~--------------------~~ 125 (155)
+|..... ..+++.+.+........+. .. ++. ..
T Consensus 129 mDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~ 208 (638)
T 3j25_A 129 IDQNGIDLSTVYQDIKEKLSAEIVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQ 208 (638)
T ss_dssp CCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHhCCCccccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhc
Confidence 9986532 2344444443211100000 00 000 00
Q ss_pred cCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 126 QMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 126 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
...-.+++..||+++.|++.+++.+.+.++
T Consensus 209 ~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~p 238 (638)
T 3j25_A 209 NCSLFPLYHGSAKSNIGIDNLIEVITNKFY 238 (638)
T ss_dssp HTSCCCCCCCCSTTCCSHHHHHHHHHHSCC
T ss_pred ccccccccccccccCCCchhHhhhhhcccc
Confidence 112246788899999999999999988764
No 198
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.05 E-value=1.9e-11 Score=92.52 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=23.8
Q ss_pred EEEEEEEcCCChh----hHHhHH---hhcCCCCEEEEEEECCCC
Q psy2161 26 IVFTTHDLGGHVQ----ARRVWR---DYFPAVDAIVFIIDASDR 62 (155)
Q Consensus 26 ~~~~~~Dt~G~~~----~~~~~~---~~~~~ad~ii~v~D~~~~ 62 (155)
.++++|||||... .+.+.. .+++++|++++|+|+++.
T Consensus 71 ~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 71 IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 6899999999754 233333 447899999999999875
No 199
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.02 E-value=2e-10 Score=85.84 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=68.6
Q ss_pred CEEEEEEEcCCChhh-------------HHhHHhhcCCCCEEEEEEECCCCCchH-HHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 25 DIVFTTHDLGGHVQA-------------RRVWRDYFPAVDAIVFIIDASDRSRFP-ESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~-------------~~~~~~~~~~ad~ii~v~D~~~~~~~~-~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
...+++|||||...+ ......|++++|++++|+|.++..... ....++..+ ...+.|+++|+
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~----~~~~~~~i~V~ 210 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREV----DPSGDRTFGVL 210 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHS----CTTCTTEEEEE
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHh----cccCCCEEEEE
Confidence 478999999997664 677889999999999999876544332 222222222 23468999999
Q ss_pred eCCCcCCcC-CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHH
Q psy2161 91 NKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRW 149 (155)
Q Consensus 91 nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~ 149 (155)
||+|+.+.. ...+..... ....++.|+.+|+.++.++++.+.+
T Consensus 211 nK~Dl~~~~~~~~~~~~~~----------------~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 211 TKIDLMDKGTDAVEILEGR----------------SFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp ECGGGCCTTCCSHHHHTTS----------------SSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred eCCccCCCcccHHHHHcCc----------------cccccCCeEEEEECChHHhccCCCH
Confidence 999986521 111211111 1123456888999988877665443
No 200
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.01 E-value=3.7e-10 Score=83.90 Aligned_cols=109 Identities=16% Similarity=0.122 Sum_probs=65.9
Q ss_pred ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHH
Q psy2161 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASED 102 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 102 (155)
.+++.+.+|||||....... ..+.+|++++|+|++....+...+. .. .+.|.++|+||+|+.+.....
T Consensus 146 ~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~ 213 (341)
T 2p67_A 146 AAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVA 213 (341)
T ss_dssp HTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHH
T ss_pred ccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHH
Confidence 45789999999997654432 3589999999999875432211111 01 146899999999986421111
Q ss_pred ----HHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 103 ----EVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 103 ----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
++...+..... ........++++||++|.|++++++++.+.
T Consensus 214 ~~~~~l~~~l~~~~~----------~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 214 IARHMYESALHILRR----------KYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHHSCC----------SBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc----------cccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 22222211000 000012468999999999999999998764
No 201
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.98 E-value=3.7e-10 Score=78.45 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=68.6
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc--CCH
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA--ASE 101 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~--~~~ 101 (155)
.+..+.+|||+|+..... .+...++.+++|+|+++.... ...+. .. .+.|+++|+||+|+.+. ...
T Consensus 107 ~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~-~~------~~~~~iiv~NK~Dl~~~~~~~~ 174 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP-EI------FRVADLIVINKVALAEAVGADV 174 (221)
T ss_dssp TTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH-HH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred CCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh-hh------hhcCCEEEEecccCCcchhhHH
Confidence 357899999999521111 122367899999999765321 11111 11 14789999999998642 345
Q ss_pred HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 102 DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 102 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.++...+.. . .....++++||++|.|++++++++.+.+
T Consensus 175 ~~~~~~~~~--------------~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 175 EKMKADAKL--------------I-NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHH--------------H-CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------h-CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 555554432 1 1245799999999999999999998754
No 202
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.92 E-value=5.5e-09 Score=75.04 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=52.1
Q ss_pred eeEEEECCEEEEEEEcCCChhhH-------HhHHhh--cCCCCEEEEEEECCCCCchHHH-HHHHHHHHhCCCC-CCCcE
Q psy2161 18 SEELSMGDIVFTTHDLGGHVQAR-------RVWRDY--FPAVDAIVFIIDASDRSRFPES-KYELDSLLADDAL-TDVPI 86 (155)
Q Consensus 18 ~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~--~~~ad~ii~v~D~~~~~~~~~~-~~~l~~~~~~~~~-~~~pi 86 (155)
...+..++.++.+|||||...+. ..+..+ .+++|++++|+|++.. ++... ..|+..+...... ..+|+
T Consensus 79 ~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~i 157 (270)
T 1h65_A 79 MVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKA 157 (270)
T ss_dssp EEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGE
T ss_pred EEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCE
Confidence 45566788999999999985432 222223 3479999999998653 34332 3566555432111 12699
Q ss_pred EEEEeCCCcCC
Q psy2161 87 LILGNKIDIFD 97 (155)
Q Consensus 87 ilv~nK~Dl~~ 97 (155)
++|+||+|+..
T Consensus 158 ivV~nK~Dl~~ 168 (270)
T 1h65_A 158 IVALTHAQFSP 168 (270)
T ss_dssp EEEEECCSCCC
T ss_pred EEEEECcccCC
Confidence 99999999864
No 203
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.90 E-value=3.6e-08 Score=79.65 Aligned_cols=92 Identities=15% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCCCceeEEEEC-------CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc
Q psy2161 13 TLHPTSEELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85 (155)
Q Consensus 13 T~~~~~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p 85 (155)
|+.-...++.+. ++.++++||||+..|..-....++-+|++|+|+|+...-.-.. ...+....+ .++|
T Consensus 65 TI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT-~~v~~~a~~----~~lp 139 (709)
T 4fn5_A 65 TITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS-ETVWRQANK----YGVP 139 (709)
T ss_dssp ---CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----HTCC
T ss_pred eEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH-HHHHHHHHH----cCCC
Confidence 333345566653 5899999999999999999999999999999999976433322 233333332 2689
Q ss_pred EEEEEeCCCcCCc---CCHHHHHhhhc
Q psy2161 86 ILILGNKIDIFDA---ASEDEVRHFFG 109 (155)
Q Consensus 86 iilv~nK~Dl~~~---~~~~~i~~~~~ 109 (155)
.++++||+|.... ...+++...+.
T Consensus 140 ~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 140 RIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp EEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred eEEEEccccccCccHHHHHHHhhhhcc
Confidence 9999999998652 23345554443
No 204
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.87 E-value=4e-09 Score=78.59 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=63.6
Q ss_pred ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS-- 100 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~-- 100 (155)
.+++.+.++||+|-... .......+|++++|+|++........+. .+ -..|.++|+||+|+.+...
T Consensus 164 ~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~ 231 (349)
T 2www_A 164 GAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPAR 231 (349)
T ss_dssp HTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHH
T ss_pred cCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHH
Confidence 36789999999995321 2344678999999999976532221111 11 2468899999999854211
Q ss_pred --HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 101 --EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 101 --~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
...+...+.... ........+++.+||++|.|++++++++.+.+
T Consensus 232 ~~~~~l~~~l~~~~----------~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 232 RIQAEYVSALKLLR----------KRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------ccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 111222111100 00000124688999999999999999998653
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.83 E-value=5.7e-08 Score=72.58 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCCCceeEEEECC-----------------EEEEEEEcCCChhhH----Hh---HHhhcCCCCEEEEEEECCC
Q psy2161 12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR----RV---WRDYFPAVDAIVFIIDASD 61 (155)
Q Consensus 12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~----~~---~~~~~~~ad~ii~v~D~~~ 61 (155)
+|++++...+.+++ .++++|||||...+. .+ +..+++++|++++|+|+++
T Consensus 35 tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 35 CTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 47777766777765 589999999987653 22 2345789999999999986
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.76 E-value=2.8e-08 Score=80.46 Aligned_cols=111 Identities=17% Similarity=0.073 Sum_probs=71.4
Q ss_pred CEEEEEEEcCCCh-------------hhHHhHHhhc-CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 25 DIVFTTHDLGGHV-------------QARRVWRDYF-PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 25 ~~~~~~~Dt~G~~-------------~~~~~~~~~~-~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
...+.++||||-. ....+...|+ +.+|++++|+|++....-.....++..+. ..+.|+++|+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~----~~g~pvIlVl 224 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGVI 224 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC----TTCSSEEEEE
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH----hcCCCEEEEE
Confidence 3679999999932 2344555555 47899999999987544333333444442 2368999999
Q ss_pred eCCCcCCcCC-HHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 91 NKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 91 nK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
||+|+.+... ...+.. -... ........++.+||++|.|++++++.+.+
T Consensus 225 NKiDlv~~~~~~~~il~-~~~~------------~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 225 TKLDLMDEGTDARDVLE-NKLL------------PLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp ECTTSSCTTCCSHHHHT-TCSS------------CCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred eCcccCCcchhhHHHHH-HHhh------------hhhccCCceEEecccccccchhHHHHHHH
Confidence 9999865221 122222 0110 01112346788999999999999988875
No 207
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.76 E-value=1.8e-09 Score=78.96 Aligned_cols=105 Identities=11% Similarity=0.132 Sum_probs=52.6
Q ss_pred EEEEEEEcCCC-------hhhHHhHH-------hhcCC-------------CCEEEEEEECCCCCchHHHH-HHHHHHHh
Q psy2161 26 IVFTTHDLGGH-------VQARRVWR-------DYFPA-------------VDAIVFIIDASDRSRFPESK-YELDSLLA 77 (155)
Q Consensus 26 ~~~~~~Dt~G~-------~~~~~~~~-------~~~~~-------------ad~ii~v~D~~~~~~~~~~~-~~l~~~~~ 77 (155)
..+++|||+|. +.+..... .++++ +++++|+.+.+. .+++... .++..+ .
T Consensus 76 ~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~ 153 (301)
T 2qnr_A 76 LRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H 153 (301)
T ss_dssp EEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T
T ss_pred cCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H
Confidence 78999999997 44443333 44432 344555555432 2343332 333333 1
Q ss_pred CCCCCCCcEEEEEeCCCcCCcC----CHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 78 DDALTDVPILILGNKIDIFDAA----SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 78 ~~~~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...|+++|+||+|+.... ..+++.+.+.. .++.++++||++| |++++|.++.+.
T Consensus 154 ----~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~-----------------~~~~~~e~Sa~~~-~v~e~f~~l~~~ 211 (301)
T 2qnr_A 154 ----NKVNIVPVIAKADTLTLKERERLKKRILDEIEE-----------------HNIKIYHLPDAES-DEDEDFKEQTRL 211 (301)
T ss_dssp ----TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHH-----------------TTCCCCCCC----------CHHHHHH
T ss_pred ----hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHH-----------------cCCeEEecCCccc-cccHHHHHHHHH
Confidence 357999999999986421 11233333332 3467899999999 999999888764
Q ss_pred c
Q psy2161 154 I 154 (155)
Q Consensus 154 i 154 (155)
+
T Consensus 212 i 212 (301)
T 2qnr_A 212 L 212 (301)
T ss_dssp H
T ss_pred h
Confidence 3
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.73 E-value=1.2e-08 Score=80.16 Aligned_cols=68 Identities=22% Similarity=0.201 Sum_probs=53.7
Q ss_pred EEEEEEEcCCChh-----------hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 26 IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 26 ~~~~~~Dt~G~~~-----------~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.++.+|||||... +...+..+++.+|++++|+|+++.........++..+. ..+.|+++|+||+|
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~~pvilVlNK~D 229 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHEDKIRVVLNKAD 229 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCGGGEEEEEECGG
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcCCCEEEEEECCC
Confidence 3699999999764 56777888999999999999987655566566666553 23579999999999
Q ss_pred cCC
Q psy2161 95 IFD 97 (155)
Q Consensus 95 l~~ 97 (155)
+.+
T Consensus 230 l~~ 232 (550)
T 2qpt_A 230 MVE 232 (550)
T ss_dssp GSC
T ss_pred ccC
Confidence 865
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=6.1e-09 Score=74.68 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=59.7
Q ss_pred cCCChh-hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhccc
Q psy2161 33 LGGHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111 (155)
Q Consensus 33 t~G~~~-~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~ 111 (155)
.||+.. ........++++|+++.|+|+.+|.+.... .+. + . ++|.++|+||+|+.+....+...+++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 377653 233456668899999999999987655321 111 1 1 7899999999999653222233333322
Q ss_pred CccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 112 GLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
.+..+ .+||++|.|++++++++.+.
T Consensus 74 ----------------~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 ----------------QGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp ----------------TTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred ----------------cCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 12346 89999999999999887653
No 210
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=3.9e-08 Score=74.86 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred EEEEEEEcCCChhhH-------Hh------------------HHhhcCCCCEEEEEEECCCC-CchHHHH-HHHHHHHhC
Q psy2161 26 IVFTTHDLGGHVQAR-------RV------------------WRDYFPAVDAIVFIIDASDR-SRFPESK-YELDSLLAD 78 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~-------~~------------------~~~~~~~ad~ii~v~D~~~~-~~~~~~~-~~l~~~~~~ 78 (155)
..+++||++|...+. .. .+.++.++++.+++|+.... .++.... .|+..+.
T Consensus 88 ~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-- 165 (418)
T 2qag_C 88 LLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-- 165 (418)
T ss_dssp EEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT--
T ss_pred cceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh--
Confidence 589999999975431 11 12234555544444444332 3454443 5666652
Q ss_pred CCCCCCcEEEEEeCCCcCCcCCH----HHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 79 DALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 79 ~~~~~~piilv~nK~Dl~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
.+.|+++|+||+|+...... ..+.+.+.. .++.++++|++++.++++++..+.+.+
T Consensus 166 ---~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~-----------------~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 166 ---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-----------------HKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp ---TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHH-----------------HTCCCCCCC-----------------C
T ss_pred ---ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHH-----------------cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 26899999999998541111 222222222 346788999999999999888887766
Q ss_pred C
Q psy2161 155 D 155 (155)
Q Consensus 155 ~ 155 (155)
|
T Consensus 226 P 226 (418)
T 2qag_C 226 P 226 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 211
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.54 E-value=7.6e-07 Score=66.69 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=28.6
Q ss_pred CEEEEEEEcCCChhhH-------HhHHhhcCCCCEEEEEEECCC
Q psy2161 25 DIVFTTHDLGGHVQAR-------RVWRDYFPAVDAIVFIIDASD 61 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~-------~~~~~~~~~ad~ii~v~D~~~ 61 (155)
+.++++|||||...+. ..+..+++.+|++++|+|+++
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 4689999999976531 233445889999999999975
No 212
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.42 E-value=9.5e-07 Score=66.30 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=85.6
Q ss_pred cCCCCCceeEEEECCEEEEEEEcCCChhh----H---HhHHhhcCCCCEEEEEEECCCCCc-hHHHHHHHHHHHhCCCCC
Q psy2161 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQA----R---RVWRDYFPAVDAIVFIIDASDRSR-FPESKYELDSLLADDALT 82 (155)
Q Consensus 11 ~pT~~~~~~~~~~~~~~~~~~Dt~G~~~~----~---~~~~~~~~~ad~ii~v~D~~~~~~-~~~~~~~l~~~~~~~~~~ 82 (155)
-.|+.++...+.+.+.+++++||||-... . ......++.||++++|+|+++|.. ++.+...+... ...+.
T Consensus 104 ftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~ 181 (376)
T 4a9a_A 104 FTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGV--GIRLN 181 (376)
T ss_dssp SSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHT--TEEET
T ss_pred CceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHh--hHhhc
Confidence 36777788899999999999999995321 1 122344678999999999987522 12222222222 12334
Q ss_pred CCcEEEEEeCCCcCC----------cCCHHHHHhhhcccCccCCCccc-------------------------ccccc--
Q psy2161 83 DVPILILGNKIDIFD----------AASEDEVRHFFGLYGLTTGKEFT-------------------------SREIL-- 125 (155)
Q Consensus 83 ~~piilv~nK~Dl~~----------~~~~~~i~~~~~~~~~~~~~~~~-------------------------~~~~~-- 125 (155)
.+|.+++.||+|..+ ..+.+++...+..+.++.+.-.. ..+.+
T Consensus 182 ~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~~p~i~v~nKid~ 261 (376)
T 4a9a_A 182 KTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRYMPAIYVLNKIDS 261 (376)
T ss_dssp CCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEEECEEEEEECGGG
T ss_pred cCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhccceEEEEecccc
Confidence 678899999999632 23445555544433332110000 00000
Q ss_pred --------cCccEEEEEeeeccCCChHHHHHHHHhhcC
Q psy2161 126 --------QMRPIELFMCSVLKRQGFGNGFRWLANYID 155 (155)
Q Consensus 126 --------~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i~ 155 (155)
....-.++.+|+..+.|++++.+.+.+.|+
T Consensus 262 ~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~ 299 (376)
T 4a9a_A 262 LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLN 299 (376)
T ss_dssp SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcC
Confidence 001123678899999999999988877653
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.38 E-value=5.3e-07 Score=66.82 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=62.0
Q ss_pred ECCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC--
Q psy2161 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS-- 100 (155)
Q Consensus 23 ~~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~-- 100 (155)
.+++.+.++||+|...... .....+|.+++++|++.......++..+ ...|.++++||+|+.....
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivvlNK~Dl~~~~~~s 212 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIAVNKADDGDGERRA 212 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEEEECCSTTCCHHHH
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEEEEchhccCchhHH
Confidence 3678999999999754322 2346899999999986432211111111 1246678889999643111
Q ss_pred ---HHHHHhhhcccCccCCCcccccccccC----ccEEEEEeeeccCCChHHHHHHHHhh
Q psy2161 101 ---EDEVRHFFGLYGLTTGKEFTSREILQM----RPIELFMCSVLKRQGFGNGFRWLANY 153 (155)
Q Consensus 101 ---~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~l~~~ 153 (155)
...+...+.. ... ...+++.+||++|.|++++++.+.+.
T Consensus 213 ~~~~~~l~~a~~l--------------~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 213 SAAASEYRAALHI--------------LTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp HHHHHHHHHHHTT--------------BCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------------ccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1122221111 110 02357889999999999999988764
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.27 E-value=1.4e-07 Score=69.07 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=56.5
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCC----HHHHHhhhcccCccCCCc
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKE 118 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~i~~~~~~~~~~~~~~ 118 (155)
.+..++++|.+++|+|+.+|..... .++..+......++|.++|+||+|+.+... ...+.+.+..
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~---~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~-------- 148 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTA---LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN-------- 148 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHH---HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH--------
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHH---HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh--------
Confidence 3346889999999999987644432 233333111124789999999999975322 1233333322
Q ss_pred ccccccccCccEEEEEeeeccCCChHHHHHHH
Q psy2161 119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150 (155)
Q Consensus 119 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l 150 (155)
.+..++.+||++|.|++++++.+
T Consensus 149 ---------~g~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 149 ---------IGYDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp ---------HTCCEEECCHHHHTTCTTTGGGG
T ss_pred ---------CCCeEEEEecCCCCCHHHHHhhc
Confidence 23478899999999988776554
No 215
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.09 E-value=1.8e-06 Score=59.78 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=41.7
Q ss_pred CCcEEEEEeCCCcCCc--CCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHhhc
Q psy2161 83 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154 (155)
Q Consensus 83 ~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~i 154 (155)
..|.++|+||+|+.+. ....++...+... .....++++||++|.|++++|+++.+.+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRI---------------NPDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHH---------------CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHh---------------CCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 3688999999998652 3455554444320 1235799999999999999999998754
No 216
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.95 E-value=1.7e-05 Score=59.12 Aligned_cols=87 Identities=21% Similarity=0.117 Sum_probs=52.3
Q ss_pred hcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCccccccc
Q psy2161 46 YFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREI 124 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 124 (155)
...++|.+++|... .|... ..+..++-... ..++|.++|+||+|+.+......+......
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~-------------- 187 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDI-------------- 187 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHH--------------
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHH--------------
Confidence 46799999987654 45333 22233332221 136788999999999753211112222222
Q ss_pred ccCccEEEEEeeeccCCChHHHHHHHH
Q psy2161 125 LQMRPIELFMCSVLKRQGFGNGFRWLA 151 (155)
Q Consensus 125 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~ 151 (155)
+...++.++.+||++|.|++++...+.
T Consensus 188 y~~~G~~v~~~Sa~~~~gl~~L~~~~~ 214 (358)
T 2rcn_A 188 YRNIGYRVLMVSSHTQDGLKPLEEALT 214 (358)
T ss_dssp HHTTTCCEEECBTTTTBTHHHHHHHHT
T ss_pred HHhCCCcEEEEecCCCcCHHHHHHhcC
Confidence 122345689999999999998877653
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.61 E-value=0.00039 Score=54.12 Aligned_cols=118 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred CCEEEEEEEcCCChhhH-HhHH---hh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR-RVWR---DY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~-~~~~---~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl~ 96 (155)
+++.+.++||||..... ..+. .. +..+|.+++|+|++...... .....+.. ..|+ .+|+||+|..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK~D~~ 253 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTKLDGH 253 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEECTTSC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeCCccc
Confidence 67899999999975321 1111 11 22799999999997653321 11222211 1564 8899999976
Q ss_pred CcCCH-HHHHhhhcccC--ccCCCcccccccccCccEEEEEeeeccCCC-hHHHHHHHHhh
Q psy2161 97 DAASE-DEVRHFFGLYG--LTTGKEFTSREILQMRPIELFMCSVLKRQG-FGNGFRWLANY 153 (155)
Q Consensus 97 ~~~~~-~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~~~~~l~~~ 153 (155)
..... ..+...++..- ++.++.. ..+.. .-+...+|++.|.| +.++++++.+.
T Consensus 254 ~~~g~~l~~~~~~g~PI~fig~ge~~---~dl~~-f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 AKGGGALSAVAATKSPIIFIGTGEHI---DDFEP-FKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCTHHHHHHHHHCCCEEEEECSSST---TCEEC-CTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cchHHHHHHHHHhCCCeEEeccccch---hhhhc-cCcceeeehhcCCCcHHHHHHHHHHH
Confidence 43221 12222222100 0000000 00000 01234589999999 99999998753
No 218
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.45 E-value=0.00011 Score=55.51 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=32.2
Q ss_pred CCCCCceeEEEECC-----------------EEEEEEEcCCChhhHH-------hHHhhcCCCCEEEEEEECCCCC
Q psy2161 12 PTLHPTSEELSMGD-----------------IVFTTHDLGGHVQARR-------VWRDYFPAVDAIVFIIDASDRS 63 (155)
Q Consensus 12 pT~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~~~-------~~~~~~~~ad~ii~v~D~~~~~ 63 (155)
+|+.++...+.+.+ .++++|||||...+.+ .+..+++++|++++|+|+++..
T Consensus 55 tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 55 CTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ---CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC----
T ss_pred cccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 56777777776654 3599999999876543 5677889999999999997543
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.13 E-value=0.0063 Score=45.89 Aligned_cols=49 Identities=27% Similarity=0.413 Sum_probs=36.7
Q ss_pred CCCCceeEEEECC-----------------EEEEEEEcCCChh-------hHHhHHhhcCCCCEEEEEEECCC
Q psy2161 13 TLHPTSEELSMGD-----------------IVFTTHDLGGHVQ-------ARRVWRDYFPAVDAIVFIIDASD 61 (155)
Q Consensus 13 T~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~-------~~~~~~~~~~~ad~ii~v~D~~~ 61 (155)
|+.++...+.+.+ ..+.+||+||... ....+...++.+|++++|+|+.+
T Consensus 55 Ti~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 55 TIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6667777777765 5799999999422 33345666789999999999864
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.02 E-value=0.0085 Score=45.74 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCEEEEEEEcCCChhhHH-hH---H--hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCC-c-EEEEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARR-VW---R--DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV-P-ILILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-~~---~--~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~-p-iilv~nK~Dl 95 (155)
+++.+.++||||...... .. . ..+..+|.+++|+|++... + .......+ +. .. | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~-~~~~~~~~-~~----~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--Q-AGIQAKAF-KE----AVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--G-HHHHHHHH-HT----TSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--H-HHHHHHHH-hh----cccCCeEEEEeCCCC
Confidence 568899999999754211 11 1 1223689999999986542 1 22222222 11 24 5 8899999997
Q ss_pred CC
Q psy2161 96 FD 97 (155)
Q Consensus 96 ~~ 97 (155)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 53
No 221
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.35 E-value=0.042 Score=42.07 Aligned_cols=66 Identities=11% Similarity=0.054 Sum_probs=39.2
Q ss_pred CCEEEEEEEcCCChhhH-----Hh--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR-----RV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~-----~~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
+++.+.++||+|..... .+ ... ...+|.+++|+|++...... .....+... -.+..+|+||.|..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~i~~-~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~----~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQISN-VIHPHEVILVIDGTIGQQAY---NQALAFKEA----TPIGSIIVTKLDGS 252 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHH-HHCCSEEEEEEEGGGGGGHH---HHHHHHHHS----CTTEEEEEECCSSC
T ss_pred CCCCEEEEECCCcccchHHHHHHHHHHHH-hhcCceEEEEEeCCCchhHH---HHHHHHHhh----CCCeEEEEECCCCc
Confidence 45789999999953211 11 112 23689999999997543222 222222211 24667899999975
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 253 ~ 253 (443)
T 3dm5_A 253 A 253 (443)
T ss_dssp S
T ss_pred c
Confidence 3
No 222
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=94.81 E-value=0.068 Score=35.78 Aligned_cols=69 Identities=14% Similarity=0.076 Sum_probs=46.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCC-CCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDA-LTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~-~~~~piilv~nK~Dl~~ 97 (155)
++.+.++|+|+... ......+..+|.+++++..+... ..+...++.+..... ..+.++.+|.|+.|...
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 47889999998662 33444556799999999876543 555555555543221 23567899999999543
No 223
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.63 E-value=0.2 Score=34.40 Aligned_cols=82 Identities=16% Similarity=0.116 Sum_probs=54.8
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
++.+.++|+|+.... .....+..+|.+++++..+ ..+...+...++.+.. .......+-+|.|+.+.......+++
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~v~N~~~~~~~~~~~~~ 193 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE-FEKPISRIEIILNRADTNSRITSDEI 193 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT-CSSCCSCEEEEEESTTSCTTSCHHHH
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH-hCCCccceEEEEecCCCCCCCCHHHH
Confidence 367899999886532 3444567899999998764 3445555566665532 22234578899999997666666677
Q ss_pred Hhhhcc
Q psy2161 105 RHFFGL 110 (155)
Q Consensus 105 ~~~~~~ 110 (155)
.+.++.
T Consensus 194 ~~~~~~ 199 (245)
T 3ea0_A 194 EKVIGR 199 (245)
T ss_dssp HHHHTS
T ss_pred HHHhCC
Confidence 666654
No 224
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.39 E-value=0.3 Score=35.00 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=44.0
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl 95 (155)
++.+.++|+|+...... ....+..||.+++++..+ ..+...+...+..+.......+.+++ +|.|+.+.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 47899999987543222 233467899999998654 33455555556655432222355655 89999984
No 225
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.16 E-value=0.27 Score=35.50 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=40.4
Q ss_pred CCEEEEEEEcCCChh--hHH-hHH-----hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQ--ARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~--~~~-~~~-----~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~D 94 (155)
+++.+.++||||... ... +.. .....+|.+++|+|++.. .........+.. ..| ..+|.||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 568899999999765 321 221 123479999999998643 122222233321 245 778899999
Q ss_pred cC
Q psy2161 95 IF 96 (155)
Q Consensus 95 l~ 96 (155)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 74
No 226
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=92.00 E-value=0.68 Score=32.38 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=42.2
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCc
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDI 95 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl 95 (155)
+++.+.++|+|+...........+..+|.+++++..+ ..+...+...++.+.. .+.+++ +|.|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~----~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEE----TNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHT----TTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHh----CCCCEEEEEECCCcc
Confidence 4588999999986532211111122589999998765 3445555556555532 246776 89999874
No 227
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.57 E-value=0.97 Score=31.52 Aligned_cols=66 Identities=8% Similarity=0.025 Sum_probs=44.2
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
+.+.+.++|+|+... ......+..||.+++++..+ ..+...+...+..+... . .+.++.+|+|+..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~-~-~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKL-N-LFLPIFLIITRFK 208 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTT-T-CCCCEEEEEEEEC
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHH-h-ccCCEEEEEeccc
Confidence 347899999998653 23444566799999999875 34555555555555322 1 2467889999994
No 228
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=91.17 E-value=0.36 Score=32.69 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=43.9
Q ss_pred CEEEEEEEcCCC-hhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~-~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
++.+.++|+|+. ... .....+..+|.+++++..+ ..+...+...++.+.... +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCcc
Confidence 477899999986 432 2334566899999998764 234444445555543312 467889999998653
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.66 E-value=0.47 Score=36.19 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=39.3
Q ss_pred CCEEEEEEEcCCChh------hHHh---HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQ------ARRV---WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~------~~~~---~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
+++.+.++||||... .... ..... ..+.+++|+|++...........+.+. -.+..+|+||.|
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~-~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKlD 249 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVL-KPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKMD 249 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHH-CCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhh-CCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEeccc
Confidence 357889999999533 1111 11222 578999999997543332222333322 146788999999
Q ss_pred cC
Q psy2161 95 IF 96 (155)
Q Consensus 95 l~ 96 (155)
..
T Consensus 250 ~~ 251 (433)
T 3kl4_A 250 GT 251 (433)
T ss_dssp GC
T ss_pred cc
Confidence 64
No 230
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.40 E-value=1.6 Score=33.03 Aligned_cols=116 Identities=13% Similarity=0.087 Sum_probs=59.9
Q ss_pred EEEEEEcCCChh----hHHhHH-hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC-----
Q psy2161 27 VFTTHDLGGHVQ----ARRVWR-DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF----- 96 (155)
Q Consensus 27 ~~~~~Dt~G~~~----~~~~~~-~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~----- 96 (155)
.+.+||++|-.. ...+.. .-+...+..++ ++..... ..+..+...+.. .++|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEP 193 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEA 193 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcc
Confidence 689999998421 122221 12334455555 6664211 222223322222 258999999999853
Q ss_pred ----CcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeee--ccCCChHHHHHHHHhhcC
Q psy2161 97 ----DAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSV--LKRQGFGNGFRWLANYID 155 (155)
Q Consensus 97 ----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~~~~~l~~~i~ 155 (155)
+.....++.+.+..... ..........-.++.+|+ ..+.|++++.+.+.+.+|
T Consensus 194 tsgLD~~~~~~l~~~l~~l~~------~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp 252 (413)
T 1tq4_A 194 DGEPQTFDKEKVLQDIRLNCV------NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP 252 (413)
T ss_dssp TTCCTTCCHHHHHHHHHHHHH------HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred cccCCHHHHHHHHHHHHHHHH------HHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence 12234444333322000 000000011235788999 667789999999987764
No 231
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=88.63 E-value=2.3 Score=28.79 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=49.5
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCc-CCHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA-ASEDE 103 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~-~~~~~ 103 (155)
++.+.++|+|+... ......+..+|.+++++..+ ..+...+...+..+.+. ...+.-+|.|+.+.... ....+
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~~~~~~~~ 184 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA---GLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT---TCEEEEEEEEEETSCTTCCCHHH
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHH
Confidence 37799999988654 33445677899999998764 23445555555555332 22456788999986432 34455
Q ss_pred HHhhhc
Q psy2161 104 VRHFFG 109 (155)
Q Consensus 104 i~~~~~ 109 (155)
+.+.++
T Consensus 185 ~~~~~~ 190 (237)
T 1g3q_A 185 AEDVME 190 (237)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 555444
No 232
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=87.53 E-value=0.63 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=42.4
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHH---HHHHHHhCCCCCCCcEE-EEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY---ELDSLLADDALTDVPIL-ILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~---~l~~~~~~~~~~~~pii-lv~nK~Dl~~ 97 (155)
.++.+.++|+|+..... ....+..||.+++++..+. .++..+.. .+..+... ...+.+++ +|.|+.|...
T Consensus 110 ~~yD~iiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~-~~~~~~~~gvv~N~~~~~~ 183 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSPL--TLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAG-LNPRLRLLGILVTMYDGRT 183 (257)
T ss_dssp TTCSEEEEECCSSCCHH--HHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHH-TCTTCEEEEEEEESBCTTC
T ss_pred cCCCEEEEeCCCCCCHH--HHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHH-hCCCceEEEEEEEeECCCc
Confidence 55889999999865322 2233456999999998753 33333333 33333211 12356664 8999998643
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=87.33 E-value=1.6 Score=33.21 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCEEEEEEEcCCChhhH-HhHH-----hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR-RVWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~-~~~~-----~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
+++.+.++||||..... .... .....++.+++|+|+......- .....+.. ..+ .-+|+||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHHhc-----cCCCeEEEEecCCCC
Confidence 46889999999964431 1111 2244789999999987543221 12222211 123 34688999975
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 4
No 234
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.14 E-value=0.69 Score=31.65 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHH
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE 103 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 103 (155)
+++.+.++|+|+.... .....+..||.++++++.+ ..++..+....+.. ... ....+.+|.|+.+.. ...++
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~~--~~~~~~~v~N~~~~~--~~~~~ 201 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLA-GDL--GIKKVRYVINKVRNI--KEEKL 201 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHH-HHH--TCSCEEEEEEEECCH--HHHHH
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHH-HHc--CCccEEEEEeCCCCh--hHHHH
Confidence 4588999999875533 3344467899999999764 23344444443322 211 125688999999832 12344
Q ss_pred HHhhhc
Q psy2161 104 VRHFFG 109 (155)
Q Consensus 104 i~~~~~ 109 (155)
+.+.++
T Consensus 202 ~~~~~~ 207 (254)
T 3kjh_A 202 IKKHLP 207 (254)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 555444
No 235
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=85.83 E-value=0.043 Score=40.94 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=38.2
Q ss_pred EEEEEEcCCChhhH--------HhHHhhc--CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 27 VFTTHDLGGHVQAR--------RVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 27 ~~~~~Dt~G~~~~~--------~~~~~~~--~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.+.++||||-.... .....++ +..+.++|+++......+..... ++.+ . ..+.|+++++||.|..
T Consensus 213 ~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l-~---~~~~~~~~v~~k~d~~ 287 (369)
T 3ec1_A 213 GATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI-K---GGRRSFVCYMANELTV 287 (369)
T ss_dssp TCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE-E---SSSEEEEEEECTTSCE
T ss_pred CeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEE-EEEc-c---CCCceEEEEecCCccc
Confidence 48999999953211 1122222 67899999998843211111000 1111 1 2357999999999975
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 288 ~ 288 (369)
T 3ec1_A 288 H 288 (369)
T ss_dssp E
T ss_pred c
Confidence 4
No 236
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=85.82 E-value=1 Score=31.13 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=50.4
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC-----CCCCCcEEEEEeCCCcCC--
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD-----ALTDVPILILGNKIDIFD-- 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~-----~~~~~piilv~nK~Dl~~-- 97 (155)
++.+.++|+|+.... .....+..+|.++++++.+ ..+...+...+..+.... .....++-+|.|+.+...
T Consensus 113 ~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~ 189 (260)
T 3q9l_A 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVS 189 (260)
T ss_dssp TCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHH
T ss_pred CCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCccccc
Confidence 678999999985532 4445566899999999764 334455555555553211 012357889999998532
Q ss_pred ---cCCHHHHHhhhc
Q psy2161 98 ---AASEDEVRHFFG 109 (155)
Q Consensus 98 ---~~~~~~i~~~~~ 109 (155)
.....++.+.++
T Consensus 190 ~~~~~~~~~~~~~~~ 204 (260)
T 3q9l_A 190 RGDMLSMEDVLEILR 204 (260)
T ss_dssp TTSSCCHHHHHHHHC
T ss_pred cccccCHHHHHHHhC
Confidence 123355555554
No 237
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=81.47 E-value=0.13 Score=38.25 Aligned_cols=72 Identities=8% Similarity=0.053 Sum_probs=39.6
Q ss_pred EEEEEcCCChhhH--------HhHHhh--cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 28 FTTHDLGGHVQAR--------RVWRDY--FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 28 ~~~~Dt~G~~~~~--------~~~~~~--~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.++||||-.... .....+ .+..+.++|+++......+.... .++ .+. ..+.|+++++||+|...
T Consensus 213 ~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~-~~d-~l~---~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 213 SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLA-RFD-YVS---GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTE-EEE-EEE---SSSEEEEEEECTTSCEE
T ss_pred eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceE-EEE-Eec---CCCceEEEEecCccccc
Confidence 8999999953211 112222 35788899999874321111100 011 111 13579999999999765
Q ss_pred cCCHHHH
Q psy2161 98 AASEDEV 104 (155)
Q Consensus 98 ~~~~~~i 104 (155)
....+..
T Consensus 288 ~~~~~~~ 294 (368)
T 3h2y_A 288 RTKLEKA 294 (368)
T ss_dssp EEEHHHH
T ss_pred cccHHHH
Confidence 3333333
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=81.30 E-value=4 Score=32.42 Aligned_cols=69 Identities=13% Similarity=0.117 Sum_probs=40.2
Q ss_pred EEEEEEEcCCC-------------hhhHHhHHhhcCCCC-EEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 26 IVFTTHDLGGH-------------VQARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 26 ~~~~~~Dt~G~-------------~~~~~~~~~~~~~ad-~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
-.+.+.|.||- .....+...|++... +++++++.+....-.........+ ...+.++++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v----~~~g~rtI~VlT 222 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV----DPEGDRTIGILT 222 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH----CSSCCSEEEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH----hhcCCceEEEec
Confidence 56899999962 234456667666554 445555443221122233444444 223679999999
Q ss_pred CCCcCCc
Q psy2161 92 KIDIFDA 98 (155)
Q Consensus 92 K~Dl~~~ 98 (155)
|.|+.+.
T Consensus 223 K~Dlv~~ 229 (608)
T 3szr_A 223 KPDLVDK 229 (608)
T ss_dssp CGGGSSS
T ss_pred chhhcCc
Confidence 9998753
No 239
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=81.18 E-value=1.5 Score=30.37 Aligned_cols=66 Identities=9% Similarity=0.011 Sum_probs=41.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
++.+.++|+|+... ......+..+|.+++++..+ ..+...+...+..+... ...++-+|.|+.+..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL---GTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH---TCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc---CCCeeEEEEccCCcc
Confidence 47799999997654 33334456799999998654 23344444444444322 124566889999854
No 240
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=80.75 E-value=11 Score=26.67 Aligned_cols=67 Identities=9% Similarity=-0.107 Sum_probs=42.6
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
+.+.++|+|....... .....+.||++++|+.... .+...+...++.+.... ...+-+|+|+.|...
T Consensus 202 yD~VIIDtpp~~~~~d-a~~l~~~aD~vllVv~~~~-~~~~~~~~~~~~l~~~g---~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVTD-AAIVGRHVGTTLMVARYAV-NTLKEVETSLSRFEQNG---IPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCTH-HHHHTTTCSEEEEEEETTT-SBHHHHHHHHHHHHHTT---CCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchHH-HHHHHHHCCeEEEEEeCCC-CcHHHHHHHHHHHHhCC---CCEEEEEEcCccccc
Confidence 5689999998653321 2334567999999998754 34455555555553321 345667889998643
No 241
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=80.58 E-value=3.9 Score=28.81 Aligned_cols=65 Identities=14% Similarity=0.133 Sum_probs=41.0
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~ 96 (155)
+.+.++|+|+...... .....+.+|.+++|+.... .+...+...++.+.+ .+.+++ +|+|+.|..
T Consensus 192 yD~VIIDtpp~~~~~d-~~~l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~----~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVTD-AQLFSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA----TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCSH-HHHHHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT----TTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHHH-HHHHHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh----CCCCEEEEEEeCCcCC
Confidence 6789999998543211 1222346899999998753 455555555555532 245665 889999854
No 242
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=79.82 E-value=1.5 Score=29.41 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=32.9
Q ss_pred hHHhhcCCCCEEEEEEECCC---CCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 42 VWRDYFPAVDAIVFIIDASD---RSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~---~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
.+...++.||++|++..--+ +-.+..+.+|+........+.++|+.+++.=-
T Consensus 60 ~l~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~ 114 (190)
T 3u7r_A 60 RLKDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSP 114 (190)
T ss_dssp HHHHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEES
T ss_pred HHHHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccccCCccCCCEEEEEEeCC
Confidence 45667889999999975433 33344444444322223456789999997644
No 243
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=79.67 E-value=8.4 Score=25.83 Aligned_cols=67 Identities=6% Similarity=-0.046 Sum_probs=43.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC-----------------------CCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD-----------------------DAL 81 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~-----------------------~~~ 81 (155)
+.++++.|......... ....+..||++|+++..-.-.--..++.|++.+... ..+
T Consensus 47 g~~v~~~dL~~~~d~~~-~~~~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~~g~~~~y~~~~~~~~~~~~~~g~~~~l 125 (204)
T 2amj_A 47 GHDVRIVRADSDYDVKA-EVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRKDPSKKYGSGGLV 125 (204)
T ss_dssp TCEEEEEESSSCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHHHHTBTTTBSSSCC-------CTTCCBSC
T ss_pred CCEEEEEeCCccccHHH-HHHHHHhCCEEEEECCccccCCCHHHHHHHHHHhhcCcceeeccCcccccccccccCccccc
Confidence 45677777654333333 344477899999999886644445667888876421 124
Q ss_pred CCCcEEEEEeC
Q psy2161 82 TDVPILILGNK 92 (155)
Q Consensus 82 ~~~piilv~nK 92 (155)
.+++++++.+-
T Consensus 126 ~gK~~~~i~t~ 136 (204)
T 2amj_A 126 QGKKYMLSLTW 136 (204)
T ss_dssp TTCEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 57888888873
No 244
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=78.92 E-value=11 Score=24.73 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=42.5
Q ss_pred EEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh-------CCCCCCCcEEEEEeCC
Q psy2161 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA-------DDALTDVPILILGNKI 93 (155)
Q Consensus 28 ~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~-------~~~~~~~piilv~nK~ 93 (155)
+++.|......... ....+..||++|+.+..-.-.--..++.|++.+.. ...+.+++++++.+--
T Consensus 31 v~v~dL~~~~D~~~-~~~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g 102 (177)
T 3ha2_A 31 VTWHPLVADFNVEQ-EQSLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTG 102 (177)
T ss_dssp EEEEECCTTCCHHH-HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEES
T ss_pred EEEEECCCcccHHH-HHHHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCC
Confidence 55666655333333 34457789999999988654444666888888753 1245778888887743
No 245
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=78.38 E-value=6.8 Score=25.96 Aligned_cols=66 Identities=18% Similarity=-0.048 Sum_probs=41.3
Q ss_pred CEEEEEEEcCCCh-----------hhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 25 DIVFTTHDLGGHV-----------QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 25 ~~~~~~~Dt~G~~-----------~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
|..+.++|..... .....+...+..+|++|++...-...-...++.+++.+ ......++|++++++
T Consensus 34 g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l-~~~~~~gK~~~~~~t 110 (197)
T 2vzf_A 34 DSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDIL-PQFALAGKAALPLAT 110 (197)
T ss_dssp SEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTS-CTTTTTTCEEEEEEE
T ss_pred CCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhc-cccccCCCEEEEEEE
Confidence 5667777764321 11222334567899999999876543334456666655 223456899999998
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.07 E-value=3.6 Score=31.26 Aligned_cols=66 Identities=12% Similarity=0.027 Sum_probs=36.7
Q ss_pred CCEEEEEEEcCCChhhH-HhHH-----hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR-RVWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~-~~~~-----~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.++||||..... .... ...-.++.+++|+|+..... .......+... -...-+|+||.|..
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~~a~~f~~~----l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALSVARAFDEK----VGVTGLVLTKLDGD 250 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHHHHHHHHHH----TCCCEEEEESGGGC
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHHHHHHHHhc----CCceEEEEeCcCCc
Confidence 45789999999964321 1111 11226889999999864322 22222222111 12356688999864
No 247
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=76.13 E-value=6.5 Score=27.42 Aligned_cols=51 Identities=8% Similarity=0.020 Sum_probs=36.0
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC----CCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD----DALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~----~~~~~~piilv~nK 92 (155)
.+...+..||++|++...-+..-...++.+++.+... ..+.++|+.++++-
T Consensus 91 ~l~~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~ts 145 (247)
T 2q62_A 91 ELRELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVS 145 (247)
T ss_dssp HHHHHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeC
Confidence 3455677899999999876655455667777766421 23578999999884
No 248
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=75.03 E-value=8 Score=25.89 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.7
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh--CCCCCCCcEEEEEeC
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA--DDALTDVPILILGNK 92 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~--~~~~~~~piilv~nK 92 (155)
.+...+..||++|++...-+..--..++.|++.+.. ...+.++|+.++.+-
T Consensus 66 ~~~~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~ts 118 (199)
T 4hs4_A 66 TMAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
T ss_dssp HHHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEEC
T ss_pred HHHHHHHhCCEEEEEcCccCCCcCHHHHHHHHHhcccCCcccCCCEEEEEEeC
Confidence 355567799999999876554444555677777643 134678999999884
No 249
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=74.16 E-value=1.2 Score=33.85 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=13.6
Q ss_pred CCCcEEEEEeCCCcCC
Q psy2161 82 TDVPILILGNKIDIFD 97 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~ 97 (155)
.++|+++|.||+|...
T Consensus 175 ~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 175 SKVNIIPIIAKADAIS 190 (427)
T ss_dssp SCSEEEEEESCGGGSC
T ss_pred hCCCEEEEEcchhccc
Confidence 4789999999999754
No 250
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=74.11 E-value=16 Score=23.89 Aligned_cols=65 Identities=8% Similarity=-0.046 Sum_probs=42.6
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~piilv~nK~D 94 (155)
.+..+.+.|..... ..-+..+|++++........-...++.+++.+... ..+.++|+.++++--.
T Consensus 33 ~g~~v~~~~l~~~~------~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~ 99 (188)
T 2ark_A 33 EGTEVRLKHVDEAT------KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDLWGEIDGKIACAFSSSGG 99 (188)
T ss_dssp TTEEEEEEETTTCC------HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGTTTSCTTCEEEEEEEESS
T ss_pred CCCeEEEEEhhhCC------HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhhHHHhCCCeEEEEEECCC
Confidence 35667777765532 22345699999999876544445667777776431 2356889999888543
No 251
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=73.96 E-value=7.3 Score=25.98 Aligned_cols=49 Identities=27% Similarity=0.201 Sum_probs=35.7
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.+...+..||++|++...-+..-...++.+++.+.. ..+.++|++++.+
T Consensus 78 ~~~~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~~-~~l~gK~~~~v~t 126 (191)
T 3k1y_A 78 EITSALSASDGLVVATPVFKASYTGLFKMFFDILDT-DALTGMPTIIAAT 126 (191)
T ss_dssp HHHHHHHHCSEEEEEEECBTTBSCHHHHHHHHHSCT-TTTTTCEEEEEEE
T ss_pred HHHHHHHHCCEEEEEcCccCCcCcHHHHHHHHHhhh-hhcCCCEEEEEEe
Confidence 345557789999999987665444566777777642 4567899999887
No 252
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=73.94 E-value=5.6 Score=26.39 Aligned_cols=69 Identities=16% Similarity=0.054 Sum_probs=42.7
Q ss_pred hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC---------CCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 42 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD---------DALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 42 ~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~---------~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
.+...+..||++|++...-+..--..++.|++.+... ..+.++|++++.+--..........+...+..
T Consensus 60 ~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~ 137 (192)
T 3fvw_A 60 HAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPF 137 (192)
T ss_dssp HHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHH
Confidence 3555677899999998765544445667888887531 24678999988875442112233444554443
No 253
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=72.78 E-value=8.6 Score=28.58 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=24.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
++.+.++|+|..-.. .....+..||.+++++..+
T Consensus 247 ~yD~VIID~pP~~~~--~~~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 247 DYDFIFIDTGPHLDP--FLLNGLAASDLLLTPTPPA 280 (403)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECSS
T ss_pred cCCEEEEECCCCccH--HHHHHHHHCCEEEEEecCc
Confidence 478999999876542 2333455799999998654
No 254
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=72.66 E-value=3.2 Score=28.77 Aligned_cols=70 Identities=11% Similarity=0.034 Sum_probs=39.2
Q ss_pred CEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcE-EEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPI-LILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pi-ilv~nK~Dl 95 (155)
++.+.++|+||....... .......+|.+++++..+ ..+...+...+..+.......+.++ -+|.|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 478999999985422111 111224699999998764 2334444444443322111124454 688899873
No 255
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=72.62 E-value=2.6 Score=29.81 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=25.8
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
++.+.++|+|+.. .......+..||.+++++..+
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 3679999999865 334455677899999999765
No 256
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=71.80 E-value=3.2 Score=29.34 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=41.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcE-EEEEeCCCcCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPI-LILGNKIDIFD 97 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~pi-ilv~nK~Dl~~ 97 (155)
++.+.++|+|+...... ...+..||.+++++..+. .+...+...+..+... ....+.++ -+|.|+.|...
T Consensus 154 ~yD~IiiD~pp~~~~~~--~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~ 226 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVYT--NNAIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDS 226 (298)
T ss_dssp GCSEEEEEECSSCSHHH--HHHHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTC
T ss_pred CCCEEEEECCCCccHHH--HHHHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCc
Confidence 47799999998654322 222335999999997653 3444444443333210 01124564 48899998644
No 257
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=70.83 E-value=19 Score=23.35 Aligned_cols=61 Identities=5% Similarity=-0.121 Sum_probs=37.9
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
-+...|.+++.+..-...-...+..+++.+ .+.+++++++++-.-.........+.+.+..
T Consensus 84 ~l~~yD~iilg~Pvy~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~~ 144 (171)
T 4ici_A 84 NIGTYDVVFIGYPIWWDLAPRIINTFIEGH----SLKGKTVVPFATSGGSSIGNSATVLKKTYPD 144 (171)
T ss_dssp TGGGCSEEEEEEECBTTBCCHHHHHHHHHS----CCTTSEEEEEEECSSCCSHHHHHHHHHHSTT
T ss_pred cHhHCCEEEEecccccCCchHHHHHHHHHc----CCCcCEEEEEEecCCCCcchHHHHHHHHcCC
Confidence 356899999999875433334555666554 4568899999987532212234455555543
No 258
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=70.24 E-value=7.8 Score=25.76 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=36.7
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNKI 93 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK~ 93 (155)
....+..||++|+++..-...--..++.|++.+... ..+.+++++++.+--
T Consensus 67 ~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 67 YRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHHHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 445577899999999886655556678899888531 135678888888753
No 259
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=69.93 E-value=7.8 Score=28.47 Aligned_cols=34 Identities=18% Similarity=0.117 Sum_probs=25.0
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
++.+.++|+|.... ......+..||.+|+++..+
T Consensus 153 ~yD~VIID~pP~l~--~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 153 RYDVIFFDVGPSLG--PFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp CCSEEEEECCSCCS--HHHHHHHTTCSEEEEEECCS
T ss_pred CCCEEEEECCCCcC--HHHHHHHHHCCEEEEEecCC
Confidence 68899999997543 33344456799999999764
No 260
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=68.90 E-value=10 Score=26.72 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCEEEEEEECC-CCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 49 AVDAIVFIIDAS-DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 49 ~ad~ii~v~D~~-~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.|++.++++|.. .+-.-.. ...+..+. . ..++++|.+|+|...
T Consensus 111 Ral~~lllldep~~gL~~lD-~~~l~~L~-~----~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 111 RVHCCLYFISPTGHSLRPLD-LEFMKHLS-K----VVNIIPVIAKADTMT 154 (270)
T ss_dssp SCCEEEEEECCCSSSCCHHH-HHHHHHHH-T----TSEEEEEETTGGGSC
T ss_pred eeeeeeEEEecCCCcCCHHH-HHHHHHHH-h----cCcEEEEEeccccCC
Confidence 578899999864 2222211 23444442 2 279999999999754
No 261
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=68.69 E-value=17 Score=24.15 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=34.8
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh--CCCCCCCcEEEEEeCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA--DDALTDVPILILGNKI 93 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~--~~~~~~~piilv~nK~ 93 (155)
+...+..||++|++...-+..-...++.+++.+.. ...+.++|+.++.+--
T Consensus 66 l~~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~ 118 (193)
T 3svl_A 66 LAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSM 118 (193)
T ss_dssp HHHHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECS
T ss_pred HHHHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCC
Confidence 45567789999999876554333455666666643 2346789999998743
No 262
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=66.04 E-value=5.7 Score=26.13 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=34.2
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcEEEEEeCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPILILGNKI 93 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~piilv~nK~ 93 (155)
....+..+|++|++...-...-...++.|++.+... ..+.++|+.++++--
T Consensus 66 ~~~~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~g 118 (193)
T 1rtt_A 66 FREQIRAADALLFATPEYNYSMAGVLKNAIDWASRPPEQPFSGKPAAILGASA 118 (193)
T ss_dssp HHHHHHHCSEEEEECCEETTEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECS
T ss_pred HHHHHHhCCEEEEEccccccCcCHHHHHHHHHhccccCcccCCCeEEEEEeCC
Confidence 334567899999997654433335567788777432 235689999999863
No 263
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=66.04 E-value=6 Score=27.79 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=38.1
Q ss_pred CEEEEEEEcCCChhhHHh-HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~-~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl 95 (155)
++.+.++|+||....... .......||.+++++..+ ..++..+...+..+.......+.+ .-+|.|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGE-MMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCC-HHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 588999999985422111 112235799999998654 233443333333332111112445 4578899863
No 264
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=66.01 E-value=8.9 Score=25.62 Aligned_cols=50 Identities=20% Similarity=0.077 Sum_probs=35.9
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--------CCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--------DALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--------~~~~~~piilv~nK~ 93 (155)
...+..||++|+.+..-.-.--..++.|++.+... ..+.+++++++.+--
T Consensus 53 ~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~~~g~~y~~~g~~l~gK~~~~~~t~G 110 (192)
T 3f2v_A 53 QKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVLTYGWAYGSKGKALKGRKIALAVSLG 110 (192)
T ss_dssp HHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSSSCCSSTTCEEEEEEEES
T ss_pred HHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHhhcCccccCCCCCCCCCEEEEEEeCC
Confidence 44577899999999886554446678899988532 245678888887744
No 265
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=65.07 E-value=26 Score=24.87 Aligned_cols=65 Identities=9% Similarity=-0.099 Sum_probs=39.2
Q ss_pred EEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCc-EEEEEeCCCcC
Q psy2161 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP-ILILGNKIDIF 96 (155)
Q Consensus 26 ~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~p-iilv~nK~Dl~ 96 (155)
+.+.++|+|+...... .......+|.+++|+.... .+...+...++.+.+. +.+ .-+|+|+.|..
T Consensus 214 yD~VIIDtpp~~~~~d-~~~l~~~ad~vilV~~~~~-~~~~~~~~~~~~l~~~----~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVSD-AAVVGRSVGTSLLVARFGL-NTAKEVSLSMQRLEQA----GVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCTH-HHHHGGGCSEEEEEEETTT-SCTTHHHHHHHHHHHT----TCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhHH-HHHHHHHCCEEEEEEcCCC-ChHHHHHHHHHHHHhC----CCCeEEEEEeCCccC
Confidence 6689999998653221 1223456999999998753 2344444444444322 233 33778999864
No 266
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=63.93 E-value=14 Score=24.09 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=33.3
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
+...+..||++|++...-...-...++.|++.+.. .+.++|++++.+
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~--~l~gK~~~~~~~ 124 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH--EWHGKPALVVSY 124 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST--TTTTCEEEEEEE
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh--hcCCCEEEEEEe
Confidence 44567799999999987654444556777777642 356789888764
No 267
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=63.34 E-value=10 Score=26.74 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=35.5
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeCCC
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNKID 94 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK~D 94 (155)
-+..||+||+.+..-...--..++.|++.+... ..+.+++++++.+--.
T Consensus 90 ~l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~Gg 150 (273)
T 1d4a_A 90 KLEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTGG 150 (273)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECSS
T ss_pred HHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCCC
Confidence 377899999999886654446678899888531 2346789888887443
No 268
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=59.90 E-value=14 Score=24.62 Aligned_cols=50 Identities=16% Similarity=0.009 Sum_probs=36.0
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC----------------CCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD----------------DALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~----------------~~~~~~piilv~nK~ 93 (155)
...+..||++|+....-...--..++.|++.+... ..+.+++++++.+--
T Consensus 82 ~~~l~~AD~iV~~~P~y~~~~pa~lK~~iD~~~~~g~~f~~~~~~g~~~~~~~l~gK~~~~i~t~g 147 (212)
T 3r6w_A 82 VGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVTSRG 147 (212)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEEECC-CEEEEECCCSCEEEEEEECS
T ss_pred HHHHHhCCEEEEEcCcccccCCHHHHHHHHHHhhCCceeecccCCCCccccccCCCCEEEEEEecC
Confidence 34577899999999886655556678899888421 135678888888754
No 269
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=59.48 E-value=22 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCEEEEEEEcCCChhhHH-hH------Hhhc-----CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 24 GDIVFTTHDLGGHVQARR-VW------RDYF-----PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-~~------~~~~-----~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.++.+.++||||...... .. ...+ ..+|.+++|+|++.. .+.+.. ...+. . .-...=+|.|
T Consensus 190 ~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~-~~~~~-~---~~~i~GvVlt 262 (320)
T 1zu4_A 190 QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQ-AEEFS-K---VADVSGIILT 262 (320)
T ss_dssp TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHH-HHHHT-T---TSCCCEEEEE
T ss_pred cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHH-HHHHh-h---cCCCcEEEEe
Confidence 468899999999765321 11 1111 248899999998732 222222 22221 1 1123447889
Q ss_pred CCCcCC
Q psy2161 92 KIDIFD 97 (155)
Q Consensus 92 K~Dl~~ 97 (155)
|.|...
T Consensus 263 k~d~~~ 268 (320)
T 1zu4_A 263 KMDSTS 268 (320)
T ss_dssp CGGGCS
T ss_pred CCCCCC
Confidence 999643
No 270
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=59.19 E-value=25 Score=23.97 Aligned_cols=51 Identities=10% Similarity=-0.030 Sum_probs=32.6
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLL 76 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~ 76 (155)
+..+.+.|......... ....+..||++|+.+..-.-.--..++.|++.+.
T Consensus 60 g~ev~~~dL~~~~Dv~~-~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~v~ 110 (218)
T 3rpe_A 60 GHQVKITTVDQGYDIES-EIENYLWADTIIYQMPAWWMGEPWILKKYIDEVF 110 (218)
T ss_dssp TCCEEEEEGGGCCCHHH-HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHH
T ss_pred CCEEEEEECCCccCHHH-HHHHHHhCCEEEEECChHhccCCHHHHHHHHHHH
Confidence 44556666553222222 3455778999999998865444456678888775
No 271
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=59.09 E-value=18 Score=24.69 Aligned_cols=51 Identities=16% Similarity=0.002 Sum_probs=36.1
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeCCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNKID 94 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK~D 94 (155)
...+..||++|+++..-.-.--..++.|++.+... ..+.+++++++.+--.
T Consensus 87 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~~~T~g~ 149 (228)
T 3tem_A 87 QKKVREADLVIFQFPLYWFSVPAILKGWMDRVLCQGFAFDIPGFYDSGLLQGKLALLSVTTGG 149 (228)
T ss_dssp HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCSSCCGGGCTTTTCEEEEEEECSS
T ss_pred HHHHHhCCEEEEECChhhcccCHHHHHHHHHHhhcCcccccCCCCCCCCCCCCEEEEEEeCCC
Confidence 34467899999999886544446668888887532 2356789888887543
No 272
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=58.04 E-value=20 Score=23.71 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=34.4
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNK 92 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK 92 (155)
..+..||++|++...-...--..++.|++.+... ..+.+++++++.+-
T Consensus 90 ~~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~ 149 (208)
T 2hpv_A 90 DQFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSN 149 (208)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEE
T ss_pred HHHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEec
Confidence 3467899999999886655556678888887531 12467888888763
No 273
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=57.86 E-value=9.7 Score=29.05 Aligned_cols=49 Identities=12% Similarity=0.086 Sum_probs=33.0
Q ss_pred EEEEEEEcCCChh--hHHhH--------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHH
Q psy2161 26 IVFTTHDLGGHVQ--ARRVW--------RDYFPAVDAIVFIIDASDRSRFPESKYELDSL 75 (155)
Q Consensus 26 ~~~~~~Dt~G~~~--~~~~~--------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~ 75 (155)
....+||..|+.. .+..| ..++..+.+.++|+|.++. +.+....|+...
T Consensus 87 ~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 87 KSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp CCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 3456889988733 34444 6677778899999999886 444445555544
No 274
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=57.80 E-value=22 Score=23.76 Aligned_cols=60 Identities=8% Similarity=0.144 Sum_probs=36.8
Q ss_pred EEcCC-ChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 31 HDLGG-HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 31 ~Dt~G-~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.|++. ....++..+.-+++++.+|+++.-....+ ..+...++.. ....++|||+|--..+
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s-~~v~wEIe~A---i~~~~~PII~Vy~~~~ 120 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANS-RALREEMNYG---IGTKGLPVIVIYPDYD 120 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCC-HHHHHHHHHH---TTTTCCCEEEEETTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCcccc-chhHHHHHHH---HHhcCCcEEEEECCcc
Confidence 44444 45567777788899999999985543333 2333333333 2235799999876543
No 275
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=57.77 E-value=14 Score=24.11 Aligned_cols=50 Identities=16% Similarity=0.074 Sum_probs=34.6
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC------------CCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD------------DALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~------------~~~~~~piilv~nK~ 93 (155)
...+..||++|++...-...--..++.|++.+... ..+.++|++++.+--
T Consensus 81 ~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g 142 (201)
T 1t5b_A 81 IAELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRG 142 (201)
T ss_dssp HHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECS
T ss_pred HHHHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecC
Confidence 34567899999998775544445667888887521 125678999988743
No 276
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=57.50 E-value=22 Score=23.15 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=32.4
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh---CCCCCCCcEEEEEeCCC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLA---DDALTDVPILILGNKID 94 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~---~~~~~~~piilv~nK~D 94 (155)
.-+..+|++|+....-...-...++.+++.+.. ...+.++|+.++++--.
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~ 119 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTAS 119 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCC
Confidence 346689999999987554333455666665432 12346789998888543
No 277
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=54.48 E-value=24 Score=23.61 Aligned_cols=50 Identities=18% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC------------CCCCCcEEEEEeC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD------------ALTDVPILILGNK 92 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~------------~~~~~piilv~nK 92 (155)
+...+..||++|++...-...--..++.|++.+.... .+.+++++++.+-
T Consensus 86 ~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~ 147 (211)
T 3p0r_A 86 YLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNAR 147 (211)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEE
T ss_pred HHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeC
Confidence 3445778999999998866544466788888875311 2457888888764
No 278
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=54.44 E-value=24 Score=22.96 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=31.3
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh---CCCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA---DDALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~---~~~~~~~piilv~nK~ 93 (155)
..-+..+|++|+....-...-...++.+++.+.. ...+.++|+.++++--
T Consensus 63 ~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g 115 (198)
T 3b6i_A 63 PQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTG 115 (198)
T ss_dssp GGGGGGCSEEEEEEEEETTEECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEES
T ss_pred HHHHHHCCEEEEEeChhcCCchHHHHHHHHHhhhhhhhcccCCCEEEEEEeCC
Confidence 3456789999999876543333445556555421 1235678998888754
No 279
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=54.23 E-value=17 Score=25.88 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=36.0
Q ss_pred CCEEEEEEEcCCChhh-----HHh--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQA-----RRV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~-----~~~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~ 96 (155)
.++.+.++||||.... ... ....+ .++.+++|+|+... ............. -...-+|.||.|..
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~-~~~~~~lv~~~~~~---~~~~~~~~~~~~~----~~i~givlnk~d~~ 250 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVL-GPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGD 250 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHH-CCSEEEEEEEGGGT---HHHHHHHHHHHHH----TCCCEEEEECGGGC
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhc-CCCEEEEEEeCCCc---HHHHHHHHHHhhc----CCCCEEEEECCCCC
Confidence 4578999999976322 111 11112 58888999998632 1221222222111 12345788999965
Q ss_pred C
Q psy2161 97 D 97 (155)
Q Consensus 97 ~ 97 (155)
.
T Consensus 251 ~ 251 (295)
T 1ls1_A 251 A 251 (295)
T ss_dssp S
T ss_pred c
Confidence 3
No 280
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=52.91 E-value=17 Score=23.32 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=32.5
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC----------CCCCCCcEEEEEeC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD----------DALTDVPILILGNK 92 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~----------~~~~~~piilv~nK 92 (155)
...+..+|++|+....-...-...++.|++.+... ..+.++|++++.+-
T Consensus 66 ~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~ 124 (184)
T 1rli_A 66 IERILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVG 124 (184)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEE
T ss_pred HHHHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeC
Confidence 34577899999999876544445566777665321 01347899998883
No 281
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=52.63 E-value=5.4 Score=25.82 Aligned_cols=50 Identities=20% Similarity=0.194 Sum_probs=33.2
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
+...+..+|++|+....-+..-...++.+++.+.. ..+.++|+.++++--
T Consensus 57 ~~~~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~-~~~~gK~~~~~~~sg 106 (174)
T 3gfs_A 57 LKQRVTKADAIVLLSPEYHSGMSGALKNALDFLSS-EQFKYKPVALLAVAG 106 (174)
T ss_dssp HHHHHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH-HHHTTCEEEEEEECC
T ss_pred HHHHHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH-hhhCCCcEEEEEECC
Confidence 44457789999999987654444555666654421 233578999998644
No 282
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=52.28 E-value=29 Score=23.64 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=33.8
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC---CCCCCCcEEEEEeC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD---DALTDVPILILGNK 92 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~---~~~~~~piilv~nK 92 (155)
...+..||++|+....-...-...++.|++.+... ..+.++|++++++-
T Consensus 74 ~~~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~ 125 (242)
T 1sqs_A 74 KKELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVA 125 (242)
T ss_dssp HHHHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEE
T ss_pred HHHHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeC
Confidence 33467899999999876654455667777776321 13567898888774
No 283
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=50.78 E-value=9.2 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=14.5
Q ss_pred cCCChHHHHHHHHhhcC
Q psy2161 139 KRQGFGNGFRWLANYID 155 (155)
Q Consensus 139 ~~~~i~~~~~~l~~~i~ 155 (155)
++.|++.+.+||+...|
T Consensus 43 t~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 43 KGENIEQILDYLFAHSG 59 (63)
T ss_dssp HCSCHHHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHhCCC
Confidence 68899999999987654
No 284
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=50.03 E-value=23 Score=25.40 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=36.0
Q ss_pred CCEEEEEEEcCCChhhHH-h------HHhhc-----CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 24 GDIVFTTHDLGGHVQARR-V------WRDYF-----PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-~------~~~~~-----~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.++.+.+.||||...... . ....+ ...+.+++|+|++.. .+.+. ....+... -...-+|+|
T Consensus 185 ~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~-~a~~~~~~----~~i~gvVlT 257 (306)
T 1vma_A 185 RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLV-QAKIFKEA----VNVTGIILT 257 (306)
T ss_dssp TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHH-HHHHHHHH----SCCCEEEEE
T ss_pred cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHH-HHHHHHhc----CCCCEEEEe
Confidence 457799999999633211 1 11122 247899999998622 22221 12222211 123446679
Q ss_pred CCCcCC
Q psy2161 92 KIDIFD 97 (155)
Q Consensus 92 K~Dl~~ 97 (155)
|.|-..
T Consensus 258 k~D~~~ 263 (306)
T 1vma_A 258 KLDGTA 263 (306)
T ss_dssp CGGGCS
T ss_pred CCCCcc
Confidence 999643
No 285
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=50.00 E-value=34 Score=25.74 Aligned_cols=51 Identities=20% Similarity=0.111 Sum_probs=36.8
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--------CCCCCCcEEEEEeCCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--------DALTDVPILILGNKID 94 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--------~~~~~~piilv~nK~D 94 (155)
...+..||++||.+..-...--..++.|++.+... ..+.+++++++.+--.
T Consensus 287 ~~~l~~aD~iv~~~P~yw~~~Pa~lK~~iDrv~~~g~~y~~~~~~l~gK~~~~~~t~g~ 345 (413)
T 3l9w_A 287 QEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGG 345 (413)
T ss_dssp HHHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBSTTCCTTTTCEEEEEEECSS
T ss_pred HHHHHhCCEEEEECchhhccCCHHHHHHHHHHHhcCceecCCCCccccceEEEEEeCCC
Confidence 44567899999999886654456678899988532 1356789888887544
No 286
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=49.24 E-value=33 Score=20.77 Aligned_cols=48 Identities=21% Similarity=0.507 Sum_probs=28.4
Q ss_pred hHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 39 ~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
.+..|.. |..-|++++|- ++. +.|+........-.++.+++|.|..|.
T Consensus 68 ireiwer-ypqldvvvivt--tdd------kewikdfieeakergvevfvvynnkdd 115 (162)
T 2l82_A 68 IREIWER-YPQLDVVVIVT--TDD------KEWIKDFIEEAKERGVEVFVVYNNKDD 115 (162)
T ss_dssp HHHHHHH-CTTCCEEEEEE--CCC------HHHHHHHHHHHHHTTCEEEEEEECSCH
T ss_pred HHHHHHh-CCCCcEEEEEe--cCc------HHHHHHHHHHHHhcCcEEEEEecCCCc
Confidence 3456766 56788888775 221 344444433222346888888887764
No 287
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=47.19 E-value=36 Score=20.62 Aligned_cols=61 Identities=8% Similarity=0.026 Sum_probs=35.1
Q ss_pred cCCCCEEEEEEECCCCCchH--HHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhcc
Q psy2161 47 FPAVDAIVFIIDASDRSRFP--ESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 110 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~--~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~ 110 (155)
+..+|++++........... .+..++..+... +.++++.++++--.. .......+.+.+..
T Consensus 43 l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~--l~~k~~~~f~t~g~~-~~~a~~~l~~~l~~ 105 (138)
T 5nul_A 43 LLNEDILILGCSAMTDEVLEESEFEPFIEEISTK--ISGKKVALFGSYGWG-DGKWMRDFEERMNG 105 (138)
T ss_dssp HTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG--CTTCEEEEEEEESSS-CSHHHHHHHHHHHH
T ss_pred HhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh--cCCCEEEEEEecCCC-CChHHHHHHHHHHH
Confidence 56899999998654322222 355666666432 568899999984322 11223445555543
No 288
>2p62_A Hypothetical protein PH0156; structural genomics, pyrococcu horikoshii OT3, PSI, protein structure initiative; 2.50A {Pyrococcus horikoshii} SCOP: e.67.1.1
Probab=45.71 E-value=59 Score=22.59 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=44.7
Q ss_pred CCceeEEEECCEEEEEEEcCCChhhHHhH-------HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC
Q psy2161 15 HPTSEELSMGDIVFTTHDLGGHVQARRVW-------RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD 79 (155)
Q Consensus 15 ~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~-------~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~ 79 (155)
+.+...+...+..+++|...|........ ..++.+...+.++.|+... +.+.+|+...++..
T Consensus 47 ~~~~~~l~~~~~~I~V~~seGk~~l~~~Lk~~l~a~~~~~~~v~~IgIarDaD~d---~~a~qSI~~~L~s~ 115 (241)
T 2p62_A 47 GEHPLVLEKDNIALVIIHAEGKQRIPKVLKSVLDSVKLGLLNVEEVYVVRDVDEG---NDVFEWVLSFLRER 115 (241)
T ss_dssp TCCCEEEEETTEEEEEECSCCTTTHHHHHHHHHHHHHHTCCCEEEEEEEEESSSS---SCHHHHHHTTCTTC
T ss_pred ccchhhhcccCceEEEEeCcchhhHHHHHHHHHhCccccccccceEEEEEecCCC---ccHHHHHHHHHHhc
Confidence 34556677788999999999987655433 3335577888899999754 45678888887655
No 289
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.44 E-value=23 Score=25.21 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=33.7
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC----CCCCCCcEEEEEeC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD----DALTDVPILILGNK 92 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~----~~~~~~piilv~nK 92 (155)
+...+..||++|++...-+..-...++.+++.+... ..+.++|+.++.+-
T Consensus 117 l~e~I~~ADgiV~aSP~Yn~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~ts 170 (279)
T 2fzv_A 117 LRALSEWSEGQVWCSPERHGQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVS 170 (279)
T ss_dssp HHHHHHHCSEEEEEEEEETTEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEEC
T ss_pred HHHHHHHCCeEEEEcCccccCcCHHHHHHHHHHhhhcccccccCCCEEEEEEEC
Confidence 455677899999998765543335556677666321 23568999998884
No 290
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=43.88 E-value=43 Score=22.70 Aligned_cols=52 Identities=12% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC------------CC-CCCcEEEEEeCCC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD------------AL-TDVPILILGNKID 94 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~------------~~-~~~piilv~nK~D 94 (155)
+...+..||++|+....-...--..++.|++.+.... .+ .+++++++.+--.
T Consensus 88 l~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg 152 (223)
T 3u7i_A 88 ILQQFKSANTYVIVLPLHNFNIPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGG 152 (223)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSS
T ss_pred HHHHHHhCCEEEEEcChhhccCCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCC
Confidence 4455678999999998866544466788888875321 13 5788888877443
No 291
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=42.98 E-value=52 Score=19.65 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=36.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHH--HHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE--SKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~--~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
+..+.++|..... ...+..+|+++++........... ++.+++.+.. .+.++|+.++++--
T Consensus 28 g~~v~~~~~~~~~------~~~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~--~l~~k~~~~~~t~g 90 (137)
T 2fz5_A 28 GADVESVRFEDTN------VDDVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP--KLKGKKVGLFGSYG 90 (137)
T ss_dssp TCCEEEEETTSCC------HHHHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG--GCSSCEEEEEEEES
T ss_pred CCeEEEEEcccCC------HHHHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh--hcCCCEEEEEEecC
Confidence 3455566654322 122567999999976543222233 5666666542 34688999999853
No 292
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=41.87 E-value=67 Score=21.08 Aligned_cols=68 Identities=4% Similarity=0.069 Sum_probs=37.6
Q ss_pred CCEEEEEEEcCCChhhH----HhHHhhcCCC-CEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCcC
Q psy2161 24 GDIVFTTHDLGGHVQAR----RVWRDYFPAV-DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDIF 96 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~----~~~~~~~~~a-d~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl~ 96 (155)
+++.+.++|+||..... .......+.. +.+++|.+.. ..+...+...++.+.+ .+.+++ +|.|+.|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~-~~~~~~~~~~i~~l~~----~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVK-LGCINHAMLTAQVIQH----AGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECS-TTHHHHHHHHHHHHHH----TTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCC-CCcHHHHHHHHHHHHH----CCCcEEEEEEeCCCCc
Confidence 34789999999754310 0111112211 2467777663 3455555555555532 245544 788999864
No 293
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=40.27 E-value=41 Score=21.85 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=31.9
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHH---hCCCCCCCcEEEEEeCCC
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLL---ADDALTDVPILILGNKID 94 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~---~~~~~~~~piilv~nK~D 94 (155)
-+..+|++|+....-...-...++.|++.+. ....+.++|+.++++--.
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~ 118 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEAST 118 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSS
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCC
Confidence 3567999999998755433445566666542 122456789988887543
No 294
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=37.09 E-value=31 Score=20.87 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=25.5
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
..+++++++|+++...... ..|...-+......++|++.|--.-
T Consensus 34 ~~I~~~~~vIvL~G~~t~~-----s~wv~~EI~~A~~~gkpIigV~~~g 77 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTR-----RDEILGAVDLARKSSKPIITVRPYG 77 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTS-----HHHHHHHHHHHTTTTCCEEEECCSS
T ss_pred CccccCCEEEEEeCCCcCC-----ChHHHHHHHHHHHcCCCEEEEEcCC
Confidence 5678999999998654322 2233222222223578988876433
No 295
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=42.95 E-value=7.3 Score=26.06 Aligned_cols=50 Identities=18% Similarity=0.180 Sum_probs=29.9
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhC--CCCCCCcEEEEEeC
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLAD--DALTDVPILILGNK 92 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~--~~~~~~piilv~nK 92 (155)
+...+..||++|++...-+..-...++.+++.+... ..+.++|+.++++-
T Consensus 67 ~~~~i~~AD~iIi~tP~Y~~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~ts 118 (199)
T 3s2y_A 67 MAQQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRVSPQPLAGKPVALVTAS 118 (199)
Confidence 455677899999997654422223334455444211 13568899888863
No 296
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=35.42 E-value=31 Score=22.75 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=30.6
Q ss_pred hcCCCCEEEEEEECCCCCchHHHHHHHHHHHh---CCCCCCCcEEEEEeCC
Q psy2161 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLA---DDALTDVPILILGNKI 93 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~---~~~~~~~piilv~nK~ 93 (155)
.+..+|++|+....-...-...++.|++.+.. ...+.++|+.++++--
T Consensus 75 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g 125 (211)
T 1ydg_A 75 DLEWAEAIVFSSPTRFGGATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQ 125 (211)
T ss_dssp HHHHCSEEEEEEEEETTEECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHCCEEEEEcCccccCccHHHHHHHHHhccccccccCCCCEEEEEEeCC
Confidence 35679999999876543333445666665431 2235678988888743
No 297
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=35.01 E-value=41 Score=21.95 Aligned_cols=49 Identities=18% Similarity=-0.040 Sum_probs=31.0
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHH---hCCCCCCCcEEEEEeCC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLL---ADDALTDVPILILGNKI 93 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~---~~~~~~~~piilv~nK~ 93 (155)
.-+..+|++|+....-...-...++.+++.+. ....+.++|+.++++--
T Consensus 50 ~~l~~~D~ii~gsP~y~g~~~~~~k~fld~~~~~~~~~~l~gK~~~~f~s~g 101 (193)
T 3d7n_A 50 AALDAADAIIFGTPTYMGGPSWQFKKFADASSKPWFSAKWQDKVFGGFTNSA 101 (193)
T ss_dssp HHHHHCSEEEEEEEEETTEECHHHHHHHHHTHHHHHTTTTTTCEEEEEEEES
T ss_pred HHHHHCCEEEEEeCccCCCccHHHHHHHHHhhhhccccccCCCEEEEEEECC
Confidence 34667999999986643322344556666553 12345689999988863
No 298
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=34.34 E-value=88 Score=19.73 Aligned_cols=59 Identities=5% Similarity=-0.129 Sum_probs=35.6
Q ss_pred cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHHHhhhc
Q psy2161 47 FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 109 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~ 109 (155)
+...|.+++.+..-...-...+..+++.. ...+++++++++--.........++.+.+.
T Consensus 76 l~~yd~iilG~P~~~g~~~~~~~~fl~~~----~l~gk~v~~f~t~g~~~~g~~~~~l~~~l~ 134 (162)
T 3klb_A 76 PEKYEVLFVGFPVWWYIAPTIINTFLESY----DFAGKIVVPFATSGGSGIGNCEKNLHKAYP 134 (162)
T ss_dssp GGGCSEEEEEEECBTTBCCHHHHHHHHTS----CCTTCEEEEEEECSSCCSHHHHHHHHHHCT
T ss_pred hhhCCEEEEEcccccCCCCHHHHHHHHhc----CCCCCEEEEEEEeCCCCccHHHHHHHHHcC
Confidence 55789999999875433334444554443 457889999998654321123445555554
No 299
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=34.31 E-value=66 Score=20.87 Aligned_cols=40 Identities=15% Similarity=0.280 Sum_probs=24.6
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEE
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~ 90 (155)
..++.||++|.++|...+++ .....+..... .++|++++-
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~--GTa~EiGyA~a----lgKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDD--GSAFXIGFMRA----MHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCH--HHHHHHHHHHH----TTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCC--CceeehhhHhh----CCCeEEEEE
Confidence 34779999999999765432 12222222211 378999984
No 300
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=33.65 E-value=87 Score=22.98 Aligned_cols=80 Identities=9% Similarity=-0.021 Sum_probs=44.1
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCC-CCCcEEEEEeCCCcCCcCCHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDAL-TDVPILILGNKIDIFDAASEDE 103 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~ 103 (155)
+..+.++|..... .......+..+|++++........-...++.+++.+.. ... .++|+.++++--.. . .....
T Consensus 285 g~~v~~~~l~~~~--~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~-~~~~~~K~~~~~~t~g~~-~-~a~~~ 359 (414)
T 2q9u_A 285 GCETVLLEMTSSD--ITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRG-LTLIKGKPAFAFGAFGWS-N-RAVPD 359 (414)
T ss_dssp TCEEEEEEGGGCC--HHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH-HTTTTTSBEEEEEEESSS-C-CHHHH
T ss_pred CCeEEEEEcCcCC--HHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHh-hcccCCCEEEEEEecCCC-c-hhHHH
Confidence 3456666654322 11222346689999999866543333455666666532 123 57899988874322 2 12344
Q ss_pred HHhhhc
Q psy2161 104 VRHFFG 109 (155)
Q Consensus 104 i~~~~~ 109 (155)
+...+.
T Consensus 360 l~~~l~ 365 (414)
T 2q9u_A 360 IVAELR 365 (414)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 301
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=32.93 E-value=75 Score=22.98 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=34.9
Q ss_pred CEEEEEEEcCCChhhHH-----h--HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARR-----V--WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~-----~--~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
++.+.+.||+|...... + ....+ ..|-.++++|++.... +......+... .....+++||.|-
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral-~~de~llvLDa~t~~~---~~~~~~~~~~~----~~it~iilTKlD~ 280 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVT-KPNLVIFVGDALAGNA---IVEQARQFNEA----VKIDGIILTKLDA 280 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHH-CCSEEEEEEEGGGTTH---HHHHHHHHHHH----SCCCEEEEECGGG
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHh-cCCCCEEEEecHHHHH---HHHHHHHHHHh----cCCCEEEEeCcCC
Confidence 35567899999633111 1 11112 4788999999865432 22223333211 1245788899995
No 302
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=32.17 E-value=86 Score=22.20 Aligned_cols=33 Identities=18% Similarity=0.004 Sum_probs=25.8
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHh
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~ 77 (155)
..+..||.||+++..-.-.--..++.|++.++.
T Consensus 108 ~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~~ 140 (280)
T 4gi5_A 108 EKLLWADTVIFQFPLWWFSMPAIMKGWIDRVYA 140 (280)
T ss_dssp HHHHHCSEEEEEEECBTTBCCHHHHHHHHHHSC
T ss_pred HHHHhCCEEEEEeccccccCcHHHHHHHHHhcc
Confidence 346689999999998665555677899999873
No 303
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=30.70 E-value=42 Score=26.10 Aligned_cols=65 Identities=18% Similarity=0.145 Sum_probs=33.6
Q ss_pred CCEEEEEEEcCCChhhHH-h---H-------Hhhc-CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 24 GDIVFTTHDLGGHVQARR-V---W-------RDYF-PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~-~---~-------~~~~-~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
.++.+.+.||+|...... + . +... ...+-+++|+|++.... .......+.... + ...+|+|
T Consensus 374 ~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~---~-itgvIlT 446 (503)
T 2yhs_A 374 RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV---G-LTGITLT 446 (503)
T ss_dssp TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT---C-CSEEEEE
T ss_pred cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc---C-CCEEEEE
Confidence 456788999999742211 1 1 1111 12567899999864321 111222221111 2 3456789
Q ss_pred CCCc
Q psy2161 92 KIDI 95 (155)
Q Consensus 92 K~Dl 95 (155)
|.|-
T Consensus 447 KLD~ 450 (503)
T 2yhs_A 447 KLDG 450 (503)
T ss_dssp CGGG
T ss_pred cCCC
Confidence 9985
No 304
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=30.70 E-value=1.4e+02 Score=21.04 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=37.0
Q ss_pred CCEEEEEEEcCCChhhHH--h--HHhhcC--CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCC
Q psy2161 24 GDIVFTTHDLGGHVQARR--V--WRDYFP--AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~--~--~~~~~~--~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~ 97 (155)
.++.+.+.||+|...... + ....+. ..+.+++|+|++. ....+..+...+ ..-+ ..-+|.||.|...
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~--~~~~~~~~~~~~----~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA--KYEDMKHIVKRF----SSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB--CHHHHHHHTTTT----SSSC-CCEEEEECTTTCS
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC--CHHHHHHHHHHH----hcCC-CCEEEEeCCCccc
Confidence 457899999999654321 1 122333 3678899998863 223333322222 1112 3445679999653
No 305
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=30.65 E-value=55 Score=24.06 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=24.5
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
+++.+.++|+|...... ....+..||.+++++..+
T Consensus 243 ~~yD~ViiD~pp~~~~~--~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 243 SDYDFILVDSGPHLDAF--LKNALASANILFTPLPPA 277 (398)
T ss_dssp TTCSEEEEEECSCCSHH--HHHHHHHCSEEEEEECCS
T ss_pred ccCCEEEEeCCCCccHH--HHHHHHHCCEEEEEecCc
Confidence 45889999998765332 223345799999998664
No 306
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=28.55 E-value=1e+02 Score=21.83 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=36.9
Q ss_pred CEEEEEEEcCCChhh-HHhHHhhcC---CCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQA-RRVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~-~~~~~~~~~---~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
|+.+.+.++.+.... ......++. ++|++|++- . ... ....+..+. ..++|++++.+..+.
T Consensus 34 g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~-~~~---~~~~~~~~~----~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 34 GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN--E-QYV---APQILRLSQ----GSGIKLFIVNSPLTL 98 (350)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC--C-SSH---HHHHHHHHT----TSCCEEEEEESCCCT
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC--c-hhh---HHHHHHHHH----hCCCcEEEEcCCCCh
Confidence 678888887775432 344455554 899999863 1 111 123344442 247999999887653
No 307
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=27.61 E-value=82 Score=20.35 Aligned_cols=44 Identities=18% Similarity=0.253 Sum_probs=25.5
Q ss_pred HhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
...++.||++|.++|...+++ .....+..... .++|++++.+-.
T Consensus 64 ~~~i~~aD~viA~ldg~~~D~--Gt~~EiG~A~a----~gkPVi~~~~D~ 107 (162)
T 3ehd_A 64 TENVLASDLLVALLDGPTIDA--GVASEIGVAYA----KGIPVVALYTDS 107 (162)
T ss_dssp HHHHHTCSEEEEECCSSSCCH--HHHHHHHHHHH----TTCCEEEECCCG
T ss_pred HHHHHHCCEEEEECCCCCCCC--CHHHHHHHHHH----CCCEEEEEEcCc
Confidence 345779999999998654322 11122222211 368988876543
No 308
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=26.93 E-value=1.1e+02 Score=21.13 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=12.4
Q ss_pred CCEEEEEEECCCCCchHHHH
Q psy2161 50 VDAIVFIIDASDRSRFPESK 69 (155)
Q Consensus 50 ad~ii~v~D~~~~~~~~~~~ 69 (155)
-.++|+|++...+...+.+.
T Consensus 103 iggII~~f~~p~~~~~~~i~ 122 (233)
T 3uc9_A 103 MAGIILITDIRQTKPQELLH 122 (233)
T ss_dssp EEEEEEEECHHHHCGGGTHH
T ss_pred cceEEEEEeCCCcchHHHHH
Confidence 36899999865444444333
No 309
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=25.84 E-value=78 Score=19.85 Aligned_cols=46 Identities=7% Similarity=0.040 Sum_probs=28.2
Q ss_pred hcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 46 YFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
-+..+|.++++......... ..+..++..+ ....+.++++.++++-
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l-~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSEL-DDVDFNGKLVAYFGTG 89 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTG-GGCCCTTCEEEEEEEC
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHh-hhcCcCCCEEEEEEEC
Confidence 35678999999876432222 3334455444 2234568899999884
No 310
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=25.45 E-value=65 Score=20.63 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=25.8
Q ss_pred hhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 45 ~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
..++.||++|.++|..++++ .....+.... ..++|++++..+-
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~--GT~~EiGyA~----A~gkPVv~~~~~~ 116 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDV--GLGMELGYAL----SQGKYVLLVIPDE 116 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCH--HHHHHHHHHH----HTTCEEEEEECGG
T ss_pred HHHHhCCEEEEEcCCCCCCc--cHHHHHHHHH----HCCCeEEEEEcCC
Confidence 44679999999998754332 1222222221 1378999987543
No 311
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=24.80 E-value=96 Score=21.16 Aligned_cols=60 Identities=5% Similarity=0.003 Sum_probs=32.5
Q ss_pred CCEEEEEEEcCCChhh-HHhHHhh-cCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQA-RRVWRDY-FPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~-~~~~~~~-~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.|+.+.+.++.+.... ....... -+++|++|++ ...... ..+..+.+ .++|++++.+..+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~~~------~~~~~l~~----~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIEPND------PRVRFMTE----RNMPFVTHGRSDM 100 (288)
T ss_dssp SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCCTTC------HHHHHHHH----TTCCEEEESCCCS
T ss_pred cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCCCCc------HHHHHHhh----CCCCEEEECCcCC
Confidence 4688888877654322 2222222 2689999976 222111 12333322 3689998877654
No 312
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=24.26 E-value=1e+02 Score=22.36 Aligned_cols=82 Identities=11% Similarity=-0.005 Sum_probs=41.7
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCC--CCCCCcEEEEEeCCCcCCcCCHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADD--ALTDVPILILGNKIDIFDAASED 102 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~ 102 (155)
+..+.++|..... ......-+..+|+++++.......-...++.+++.+.... .+.++|+.++++- +-.. ....
T Consensus 285 g~~v~~~~~~~~~--~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~~~~-g~~~-~a~~ 360 (404)
T 2ohh_A 285 GVDVRVYCLHEDD--RSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVFGSM-GGNG-GATG 360 (404)
T ss_dssp TCEEEEEETTTSC--HHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEEEEE-SSSC-CHHH
T ss_pred CCeEEEEECCCCC--HHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEEEec-CCCC-hhHH
Confidence 3566677765432 1122234668999999975433222223445554442111 0367899988873 3222 1234
Q ss_pred HHHhhhcc
Q psy2161 103 EVRHFFGL 110 (155)
Q Consensus 103 ~i~~~~~~ 110 (155)
.+...+..
T Consensus 361 ~l~~~l~~ 368 (404)
T 2ohh_A 361 TMKELLAE 368 (404)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 313
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=24.09 E-value=2e+02 Score=20.52 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=36.8
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEE-EEEeCCCc
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL-ILGNKIDI 95 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~pii-lv~nK~Dl 95 (155)
.+-+.++|+++....... ...+..||.++++.... .-++..+...+..+.......+.++. +|+|+++.
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 367888998865432221 12356799998887432 22334444444444322222234443 56787764
No 314
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=23.81 E-value=2.2e+02 Score=20.94 Aligned_cols=47 Identities=15% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCc
Q psy2161 43 WRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95 (155)
Q Consensus 43 ~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl 95 (155)
....+.+.|++++.. -.+++++...++...+.. .++||++.+...=.
T Consensus 95 I~~~~~~~dG~VItH---GTDTmeeTA~~Ls~~l~~---~~kPVVlTGAmrP~ 141 (358)
T 2him_A 95 IKAHYDDYDGFVILH---GTDTMAYTASALSFMLEN---LGKPVIVTGSQIPL 141 (358)
T ss_dssp HHHHGGGCSEEEEEC---CSTTHHHHHHHHHHHEET---CCSCEEEECCSSCT
T ss_pred HHHHHhcCCeEEEec---CchHHHHHHHHHHHHHhc---CCCCEEEeCCCCCC
Confidence 344556799998885 346788888888877642 36899999987643
No 315
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=23.08 E-value=2.2e+02 Score=20.60 Aligned_cols=65 Identities=6% Similarity=-0.126 Sum_probs=38.3
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
+..+.++|..... .. .....+..+|++++........-...++.++..+.. ..+.++++.++++-
T Consensus 281 g~~v~~~~~~~~~-~~-~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l~~l~~-~~l~~k~~~~f~t~ 345 (402)
T 1e5d_A 281 GCTVKLMWCKACH-HS-QIMSEISDAGAVIVGSPTHNNGILPYVAGTLQYIKG-LRPQNKIGGAFGSF 345 (402)
T ss_dssp TCEEEEEETTTSC-HH-HHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHH-TCCCSCEEEEEEEE
T ss_pred CCeEEEEECCCCC-HH-HHHHHHHHCCEEEEECCccCCCchHHHHHHHHHhhh-cccCCCEEEEEEcC
Confidence 3466777765322 11 122235679999999765443333445666666533 23568899999884
No 316
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=22.85 E-value=1.5e+02 Score=18.58 Aligned_cols=79 Identities=14% Similarity=0.058 Sum_probs=44.5
Q ss_pred CEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCCcCCcCCHHHH
Q psy2161 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEV 104 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i 104 (155)
|..+.++|...... .. ...-+..+|++++...... ..+.. ..++..+... ...++++.++++--- . ......+
T Consensus 29 g~~v~~~~~~~~~~-~~-~~~~~~~~d~ii~Gspty~-g~~p~-~~fl~~l~~~-~l~gk~v~~fgs~g~-~-g~a~~~l 101 (161)
T 3hly_A 29 GVAVEMVDLRAVDP-QE-LIEAVSSARGIVLGTPPSQ-PSEAV-ATALSTIFAA-AHNKQAIGLFDSYGG-D-DEPIDAL 101 (161)
T ss_dssp TCCEEEEETTTCCH-HH-HHHHHHHCSEEEEECCBSS-CCHHH-HHHHHHHHHH-CCTTSEEEEECCCCS-S-BCCHHHH
T ss_pred CCeEEEEECCCCCH-HH-HHHHHHhCCEEEEEcCCcC-CchhH-HHHHHHHHhh-hhCCCEEEEEEcCCC-C-cHHHHHH
Confidence 45567777654321 11 1122346899999876553 23443 4555555432 356899999998432 2 2345666
Q ss_pred Hhhhcc
Q psy2161 105 RHFFGL 110 (155)
Q Consensus 105 ~~~~~~ 110 (155)
.+.+..
T Consensus 102 ~~~l~~ 107 (161)
T 3hly_A 102 LAQFRN 107 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
No 317
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=22.05 E-value=58 Score=23.82 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=25.0
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhcCCCCEEEEEEECC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~~~ad~ii~v~D~~ 60 (155)
+++.+.++|+|.... ......+..||.+++|+..+
T Consensus 258 ~~yD~VIID~p~~~~--~~~~~~l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 258 DNYDEIIVDLPFSLE--IEKLKLLSKAWRIIVVNDGS 292 (373)
T ss_dssp SCCSEEEEECCCCCC--HHHHHHHTTCSEEEEEECCC
T ss_pred CCCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEecCC
Confidence 357899999985432 23444577899999998654
No 318
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=21.31 E-value=1e+02 Score=19.62 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=26.9
Q ss_pred cCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEe
Q psy2161 47 FPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGN 91 (155)
Q Consensus 47 ~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~n 91 (155)
+...|.+++.+........ ..+..++..+ ....+.++++.++++
T Consensus 43 l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l-~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 43 LEAYDILLLGIPTWYYGEAQCDWDDFFPTL-EEIDFNGKLVALFGC 87 (175)
T ss_dssp HHTCSEEEEECCEETTTEECHHHHHHHHHH-TTCCCTTCEEEEEEE
T ss_pred hhhCCEEEEEEeecCCCcChHHHHHHHhhh-hhcccCCCEEEEEEE
Confidence 4578999998755222222 3344555554 333566889999888
No 319
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=21.27 E-value=1e+02 Score=21.17 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=32.7
Q ss_pred CCEEEEEEEcCCChhhHHhHHhhc-CCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCCC
Q psy2161 24 GDIVFTTHDLGGHVQARRVWRDYF-PAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94 (155)
Q Consensus 24 ~~~~~~~~Dt~G~~~~~~~~~~~~-~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~D 94 (155)
.|+.+.+.++.+............ +++|++|++-.. ... ..+..+.. .++|++++.+..+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~--~~~-----~~~~~l~~----~~iPvV~~~~~~~ 99 (294)
T 3qk7_A 39 RGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQ--PED-----FRLQYLQK----QNFPFLALGRSHL 99 (294)
T ss_dssp TTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCC--SSC-----HHHHHHHH----TTCCEEEESCCCC
T ss_pred CCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCC--CCh-----HHHHHHHh----CCCCEEEECCCCC
Confidence 467888887764332333333332 489999886321 111 12333322 2689999887644
No 320
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=21.26 E-value=92 Score=20.04 Aligned_cols=44 Identities=9% Similarity=0.151 Sum_probs=25.6
Q ss_pred HhhcCCCCEEEEEEEC---CCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeCC
Q psy2161 44 RDYFPAVDAIVFIIDA---SDRSRFPESKYELDSLLADDALTDVPILILGNKI 93 (155)
Q Consensus 44 ~~~~~~ad~ii~v~D~---~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK~ 93 (155)
...+++||++|.++|. ..+++ .....+.... ..++|++++.+..
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~--GTafEiGyA~----AlgKPVi~l~~d~ 108 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDC--GTAFEVGCAA----ALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCH--HHHHHHHHHH----HTTCEEEEECSCC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCC--cHHHHHHHHH----HCCCEEEEEEcCc
Confidence 4567899999999983 22221 1222222221 1379999987643
No 321
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=20.79 E-value=2.3e+02 Score=20.06 Aligned_cols=65 Identities=9% Similarity=0.035 Sum_probs=35.4
Q ss_pred CEEEEEEEcCCChhhHH------------hHHhhcCCCCEEEEEEECCCCCchHHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 25 DIVFTTHDLGGHVQARR------------VWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 25 ~~~~~~~Dt~G~~~~~~------------~~~~~~~~ad~ii~v~D~~~~~~~~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
+..+.+.||+|...... ..+......+.+++++|++..... ...+..+.... + ..+++.||
T Consensus 184 ~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~~---~-~t~iivTh 256 (304)
T 1rj9_A 184 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEAV---G-LTGVIVTK 256 (304)
T ss_dssp TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHHH---C-CSEEEEEC
T ss_pred CCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHHc---C-CcEEEEEC
Confidence 34567899999532110 111223457788899998654332 22233322111 2 46778899
Q ss_pred CCcC
Q psy2161 93 IDIF 96 (155)
Q Consensus 93 ~Dl~ 96 (155)
.|..
T Consensus 257 ~d~~ 260 (304)
T 1rj9_A 257 LDGT 260 (304)
T ss_dssp TTSS
T ss_pred Cccc
Confidence 9853
No 322
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=20.56 E-value=1.3e+02 Score=23.72 Aligned_cols=54 Identities=13% Similarity=-0.022 Sum_probs=30.8
Q ss_pred CCCcEEEEEeCCCcCCcCCHHHHHhhhcccCccCCCcccccccccCccEEEEEeeeccCCChHHHHHHHHh
Q psy2161 82 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152 (155)
Q Consensus 82 ~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 152 (155)
.++|+++.+|+.........+.+.+.+.. .+..+..+=++-|.|-.++-+.+.+
T Consensus 373 fGvpvVVaiN~F~tDT~aEi~~v~~~~~~-----------------~G~~~~~~wa~GG~G~~~LA~~Vv~ 426 (557)
T 3pzx_A 373 FGVPAVVAINAFPTDTEAELNLLYELCAK-----------------AGAEVALSWAKGGEGGLELARKVLQ 426 (557)
T ss_dssp TTCCEEEEEECCTTCCHHHHHHHHHHCCS-----------------SEEEEECHHHHGGGGGHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHH-----------------cCCCEEEEecccchhHHHHHHHHHH
Confidence 47999999999864322222333343333 3444444455667776666555443
No 323
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=20.45 E-value=66 Score=20.21 Aligned_cols=46 Identities=11% Similarity=0.087 Sum_probs=27.3
Q ss_pred hcCCCCEEEEEEECCCCCch-HHHHHHHHHHHhCCCCCCCcEEEEEeC
Q psy2161 46 YFPAVDAIVFIIDASDRSRF-PESKYELDSLLADDALTDVPILILGNK 92 (155)
Q Consensus 46 ~~~~ad~ii~v~D~~~~~~~-~~~~~~l~~~~~~~~~~~~piilv~nK 92 (155)
-+..+|.++++......... ..++.++..+ ....+.++++.++++-
T Consensus 43 ~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l-~~~~l~gk~~~~f~t~ 89 (169)
T 1czn_A 43 DLNAYDYLIIGCPTWNVGELQSDWEGIYDDL-DSVNFQGKKVAYFGAG 89 (169)
T ss_dssp GGGGCSEEEEECCEETTTEECHHHHHHGGGG-GGSCCTTCEEEEEEEC
T ss_pred HHhhCCEEEEEecccCCCcCCHHHHHHHHHh-hhhccCCCEEEEEEEC
Confidence 35678999998755331122 2233444443 3334568999999974
Done!