RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2161
(155 letters)
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 200 bits (511), Expect = 9e-67
Identities = 97/155 (62%), Positives = 122/155 (78%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLK+DR QH+PTLHPTSEEL++ + FTT DLGGH+QARRVW++Y PA++ IVF++D +
Sbjct: 44 MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCA 103
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D R ESK ELDSL+ D+ + +VPILILGNKID +A SE+ +R FGLYG TTGK
Sbjct: 104 DHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSV 163
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
S + L RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 191 bits (488), Expect = 2e-63
Identities = 83/154 (53%), Positives = 107/154 (69%), Gaps = 5/154 (3%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
MLKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+
Sbjct: 42 MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAA 101
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D RF E++ ELD+L L DVP +ILGNKID +A SE E+R GL T +
Sbjct: 102 DPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE 161
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ RP+E+FMCSV+ R G+ F+WL+ YI
Sbjct: 162 GQ-----RPVEVFMCSVVMRNGYLEAFQWLSQYI 190
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 151 bits (384), Expect = 1e-47
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 12/154 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
L +PT+ E L +I F DLGG R WR YF DA+++++D++
Sbjct: 41 RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDST 100
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
DR R +K+EL +LL +D L +LI NK D+ DAASE E+ G+ +
Sbjct: 101 DRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN----- 155
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + S G G WL +
Sbjct: 156 -------RTWTIVKSSSKTGDGLVEGMDWLVERL 182
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 140 bits (355), Expect = 2e-43
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
L+ +PT+ E ++ ++ F DLGG R WR Y+ DA+++++D+ D
Sbjct: 27 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 86
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R SK EL ++L ++ L +++ NK D+ A + E+ + GL L
Sbjct: 87 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD------ 140
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R ++F S K G WL +
Sbjct: 141 ------RKWQIFKTSATKGTGLDEAMEWLVETL 167
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 135 bits (342), Expect = 2e-41
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
L+ PT+ E LS ++ DLGG R WR Y+ A++F++D++D
Sbjct: 38 LQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD 97
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
+ R + EL +L ++ L D +L+ NK D A S EV L L
Sbjct: 98 KDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD------ 151
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + S +K +G G WL + I
Sbjct: 152 ------RSWSIVASSAIKGEGITEGLDWLIDVI 178
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 135 bits (342), Expect = 2e-41
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ PT+ EE+ + + F D+GG R W Y+ + ++ ++D++D
Sbjct: 41 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 100
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R ++ EL +LA + L +LI NK D+ + + E+ F L +
Sbjct: 101 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------ 154
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ C L +G G W+ + +
Sbjct: 155 ------HQWHIQACCALTGEGLCQGLEWMMSRL 181
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 133 bits (336), Expect = 2e-40
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ PT+ EE+ + + F D+GG R W Y+ + ++ ++D++D
Sbjct: 36 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 95
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R ++ EL +LA + L +LI NK D+ + + E+ F L +
Sbjct: 96 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------ 149
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ C L +G G W+ + +
Sbjct: 150 ------HQWHIQACCALTGEGLCQGLEWMMSRL 176
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 128 bits (325), Expect = 9e-39
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
L ++ + PT + + D+GG + R WR YF D ++++ID++D
Sbjct: 36 LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R RF E+ EL LL ++ L+ VP+LI NK D+ AA E+ L+ +
Sbjct: 96 RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD------ 149
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R ++ CS L +G +G W+ +
Sbjct: 150 ------RVWQIQSCSALTGEGVQDGMNWVCKNV 176
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 128 bits (323), Expect = 2e-38
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 14/156 (8%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
N ++ +PT+ + E+ + FT D+ G + R +W Y+ AI+F+ID+S
Sbjct: 42 KPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS 101
Query: 61 DRSRFPESKYELDSLLADDALT--DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 118
DR R +K ELD+LL + +PIL NK+D+ DA + +V L +
Sbjct: 102 DRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD--- 158
Query: 119 FTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+P + +K +G G WL + I
Sbjct: 159 ---------KPWHICASDAIKGEGLQEGVDWLQDQI 185
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 126 bits (318), Expect = 6e-38
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ EL +LA+D L D +L+ NK D+ +A + E+ GL+ L
Sbjct: 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH------ 133
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + G G WL+N +
Sbjct: 134 ------RNWYIQATCATSGDGLYEGLDWLSNQL 160
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 124 bits (314), Expect = 6e-37
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 49 LKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 108
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R ES EL +L +D L D +L+ NK D+ +A E+ GL L +
Sbjct: 109 RERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS------ 162
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + + G +G WL++ +
Sbjct: 163 ------RTWYVQATCATQGTGLYDGLDWLSHEL 189
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 123 bits (311), Expect = 1e-36
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 13/154 (8%)
Query: 2 LKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ + + + M PT+ +++ G++ D+GG + R +W Y V AIV+++DA+
Sbjct: 42 IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 101
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D+ + SK EL +LL L +P+L+LGNK D+ A E E+ L +
Sbjct: 102 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD----- 156
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R I + S ++ +WL +
Sbjct: 157 -------REICCYSISCKEKDNIDITLQWLIQHS 183
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 122 bits (309), Expect = 3e-36
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ PTL + L D+GG R WR+YF + D +++++D++D
Sbjct: 38 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 97
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R + + EL SLL ++ L +LI NK D+ A S + ++ L + +
Sbjct: 98 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS------ 151
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ CS + + G WL + I
Sbjct: 152 ------HHWRIQGCSAVTGEDLLPGIDWLLDDI 178
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 123 bits (311), Expect = 3e-35
Identities = 44/154 (28%), Positives = 71/154 (46%), Gaps = 12/154 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++
Sbjct: 184 KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 243
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
DR R E++ EL +LA+D L D +L+ NK D+ +A + E+ GL+ L
Sbjct: 244 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH----- 298
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + G G WL+N +
Sbjct: 299 -------RNWYIQATCATSGDGLYEGLDWLSNQL 325
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 118 bits (297), Expect = 3e-32
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 342 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 401
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ EL ++ D + D ILI NK D+ DA E++ GL +
Sbjct: 402 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD------ 455
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
R + G G WL +
Sbjct: 456 ------RNWYVQPSCATSGDGLYEGLTWLTSNY 482
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 107 bits (270), Expect = 2e-30
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 9/113 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFI 56
+L D + + P S G T D GHV+ R DY V ++F+
Sbjct: 67 LLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 125
Query: 57 IDAS-DRSRFPESKYELDSLLADDALTD---VPILILGNKIDIFDAASEDEVR 105
+D++ D + + L +L+ + + ILI NK ++F A +++
Sbjct: 126 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK 178
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 105 bits (265), Expect = 2e-29
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFI 56
+L D + + P S G T D GHV+ R DY V ++F+
Sbjct: 31 LLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 89
Query: 57 IDAS-DRSRFPESKYELDSLLADDALTD---VPILILGNKIDIFDAASEDEVRH 106
+D++ D + + L +L+ + + ILI NK ++F A +++
Sbjct: 90 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 143
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 98.3 bits (245), Expect = 2e-26
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 21/160 (13%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFI 56
L + ++ +S + T DL GH R ++ + + A+VF+
Sbjct: 26 RLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFV 85
Query: 57 IDASDRSRF-PESKYELDSLLADDALT--DVPILILGNKIDIFDAASEDEVRHFFGLYGL 113
+D++ R + L +L D +LI NK DI A S ++
Sbjct: 86 VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK--- 142
Query: 114 TTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
E+ +R S L L
Sbjct: 143 ---------ELNTLRVTRSAAPSTLD--SSSTAPAQLGKK 171
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 86.3 bits (214), Expect = 4e-22
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 22/149 (14%)
Query: 11 MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY 70
L E+ F + + G V + VD IVF+ D S +R +
Sbjct: 59 FDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAE 117
Query: 71 ELDSLLAD-----DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREIL 125
+ ++ + L DVPI+I NK D+ DA + VR
Sbjct: 118 SMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP--------------- 162
Query: 126 QMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ + +G + ++ +
Sbjct: 163 -EGKFPVLEAVATEGKGVFETLKEVSRLV 190
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain,
acetylation, ADP- ribosylation, alternative splicing,
cell cycle, cell division; 2.40A {Homo sapiens}
Length = 227
Score = 64.3 bits (156), Expect = 2e-13
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 19/132 (14%)
Query: 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA----DDALTD 83
G + VD +++ +A R E ++A +
Sbjct: 104 EGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSG 162
Query: 84 VPILILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
P+L+L + H L L P + G
Sbjct: 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTG 209
Query: 143 FGNGFRWLANYI 154
F NG W+ +
Sbjct: 210 FLNGIEWILEEV 221
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 63.1 bits (153), Expect = 3e-13
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 4/108 (3%)
Query: 2 LKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRD---YFPAVDAIVFII 57
+ + T T +++S + F D G + D F A++++I
Sbjct: 44 MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVI 103
Query: 58 DASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
DA D ++ + A D+ + +K+D + E +
Sbjct: 104 DAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQ 151
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation
pathway, ubiquitin Pro ligase, protein binding-cell
cycle complex; 2.80A {Homo sapiens}
Length = 312
Score = 61.3 bits (148), Expect = 4e-12
Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 19/126 (15%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA----DDALTDVPIL 87
G + VD +++ +A R E ++A + P+L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 88 ILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNG 146
+L + H L L P + GF NG
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 298
Query: 147 FRWLAN 152
W+
Sbjct: 299 IEWILE 304
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 54.6 bits (131), Expect = 9e-10
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 2 LKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ-----ARRVWRDYFPAVDAIVF 55
T + T+ L G++ D GG + F V ++
Sbjct: 27 YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH 86
Query: 56 IIDASDRSRFPESKYELDSLLADDAL-TDVPILILGNKIDIFDAASEDEVR 105
+ D + + +L D I +L +K+D+ +E+
Sbjct: 87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELF 137
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 48.3 bits (114), Expect = 2e-07
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
+ T + + + F D+GG RR W F V AI+F++ +S
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 62 --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
+R E+ S+ + L + +++ NK D+
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 47.7 bits (113), Expect = 2e-07
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW---RDYFPAVDAIVFIID 58
++ T T +P+ E S I +L G + F +V A+V++ID
Sbjct: 23 MQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVID 81
Query: 59 ASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
+ D + + A + I +L +K+D + + +
Sbjct: 82 SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQ 128
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 47.3 bits (112), Expect = 3e-07
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 62 --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
+R ESK +++ + +++ NK D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 45.1 bits (106), Expect = 2e-06
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 61
+ T + D+ F D+GG R+ W F V AI+F + SD
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 62 --RSRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
+R ES DS+ + TD I++ NK D+F
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 44.3 bits (104), Expect = 4e-06
Identities = 21/97 (21%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 10 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR------- 62
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 63 ---SRFPESKYELDSLLADDALTDVPILILGNKIDIF 96
+R ES ++++ + ++V I++ NK D+
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 43.6 bits (102), Expect = 7e-06
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 32 DLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDSLLADDAL 81
D+GG RR W F V A++F S+ ++R E+K D +L
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 82 TDVPILILGNKIDIF 96
++ NK DIF
Sbjct: 249 EKTSFMLFLNKFDIF 263
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 40.6 bits (95), Expect = 6e-05
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 51 DAIVFIIDASDRSRFPESKY--ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 108
+ I++I D S+ FP + + + + D+P L++ NKID+ D + + F
Sbjct: 248 NLIIYIFDPSEHCGFPLEEQIHLFEEVHGE--FKDLPFLVVINKIDVADEENIKRLEKFV 305
Query: 109 GLYGLT 114
GL
Sbjct: 306 KEKGLN 311
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.0 bits (92), Expect = 1e-04
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 18 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLA 77
L G + + L + Y AI+F++ AS P + E L
Sbjct: 169 LTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----PCTLGERRYLEN 224
Query: 78 DDALTDVPILILGNKIDIFDAASEDEVRH 106
+ + L N D + D
Sbjct: 225 YIKGRGLTVFFLVNAWDQVRESLIDPDDV 253
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.6 bits (84), Expect = 0.002
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 39/115 (33%)
Query: 10 HMPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF-IIDASD-RS 63
H L P S+ +L ++ F D+ P V+ D SD R
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQ------------IP-----VYDTFDGSDLR- 469
Query: 64 RFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHF--FGLYGLTTG 116
+ + D + P+ ++ ++ + H FG G +G
Sbjct: 470 ---VLSGSISERIVDCIIRL-PVK--------WETTTQFKATHILDFGP-GGASG 511
Score = 29.2 bits (65), Expect = 0.68
Identities = 32/163 (19%), Positives = 45/163 (27%), Gaps = 57/163 (34%)
Query: 18 SEELSMGDIVFTTHDLGGHVQARRVWR---DYF---------------PAVDAIVF---- 55
S+E MG ++ T A+ VW ++F P I F
Sbjct: 1626 SQEQGMGMDLYKTSKA-----AQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680
Query: 56 ---IIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF---- 108
I R + +E D L IF +E + F
Sbjct: 1681 GKRI-----RENYSAMIFETI---VDGKLKTEK---------IFKEINEHSTSYTFRSEK 1723
Query: 109 GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
GL T +FT + M E LK +G A
Sbjct: 1724 GLLSAT---QFTQPALTLM---EKAAFEDLKSKGLIPADATFA 1760
Score = 26.9 bits (59), Expect = 3.4
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 25/105 (23%)
Query: 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIF--- 96
R +++ Y V I +++ L L+ + + ++I
Sbjct: 174 RDLYQTYHVLVGD--LIKFSAET---------LSELIRTTLDAEK---VFTQGLNILEWL 219
Query: 97 ----DAASEDEVRHF---FGLYGLTTGKEF-TSREILQMRPIELF 133
+ +D + L G+ + + ++L P EL
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 35.3 bits (81), Expect = 0.005
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 30/121 (24%)
Query: 40 RRVWRDYFPAVDAIVFIIDASDR--SRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97
R+ + +V I+D D S P + + +L++GNK D+
Sbjct: 60 LRILNGIGKSDALVVKIVDIFDFNGSWLPG---------LHRFVGNNKVLLVGNKADLIP 110
Query: 98 AASEDE-----VRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
+ + + +R+ GL +P ++F+ S K QG +
Sbjct: 111 KSVKHDKVKHWMRYSAKQLGL--------------KPEDVFLISAAKGQGIAELADAIEY 156
Query: 153 Y 153
Y
Sbjct: 157 Y 157
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 35.1 bits (82), Expect = 0.005
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
A++ + D I+F+IDA++ R P + + + + P++++ NKID
Sbjct: 86 AKQSLEE----ADVILFMIDATEGWR-PRDEEIYQNFIKP---LNKPVIVVINKID 133
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE 103
D ++F++D + E+ +PI ++ NK DI
Sbjct: 85 DRVLFMVDGTTT--DAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMS 135
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 34.0 bits (78), Expect = 0.009
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 14/94 (14%)
Query: 51 DAIVFIIDASDRSRFPESK--YELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 108
I+FIID S++ + S+ ++ I+I NKID + S
Sbjct: 110 GVILFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLL 167
Query: 109 GLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
K+ PI+ S L G
Sbjct: 168 -------IKQILDNV---KNPIKFSSFSTLTGVG 191
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 33.8 bits (78), Expect = 0.016
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 51 DAIVFIIDASDRSRFPESKYE-LDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
DA++ +ID++ + +L + ++ PIL+ NKID + ++
Sbjct: 259 DALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLD 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.017
Identities = 27/166 (16%), Positives = 44/166 (26%), Gaps = 45/166 (27%)
Query: 21 LSMGDIVFTTHDLGGHVQA--RRVWRDYFPAVDAIVFII----DASDRSR--FPESKYEL 72
L++ + + + +Q ++ ++ D I R YE
Sbjct: 187 LNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE- 244
Query: 73 DSLLADDALTDV-------------PILILGNKIDIFDAASEDEVRHFF---GLYGLTT- 115
+ LL L +V IL+ + D S H LT
Sbjct: 245 NCLLV---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 116 -GKEFTS-----------REILQMRPIELFMCSVLKRQGFGNGFRW 149
K RE+L P L + + R G W
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TW 344
Score = 29.8 bits (66), Expect = 0.41
Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 16/54 (29%)
Query: 74 SLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQM 127
+ +A D + + + F ++ L + +L+M
Sbjct: 164 TWVALDVCLSYKV----------------QCKMDFKIFWLNLKNCNSPETVLEM 201
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 33.6 bits (78), Expect = 0.018
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 39 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
D V+A+V+++D PE + +L + VPIL++GNK+D
Sbjct: 80 VYEALAD----VNAVVWVVDLRHPPT-PEDELVARAL--KPLVGKVPILLVGNKLD 128
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 33.4 bits (76), Expect = 0.019
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 30/121 (24%)
Query: 40 RRVWRDYFPAVDAIVFIIDASD--RSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97
+ + +V I+D D S P D PIL++GNK D+
Sbjct: 62 LSMLHRIGESKALVVNIVDIFDFNGSFIPG---------LPRFAADNPILLVGNKADLLP 112
Query: 98 AAS-----EDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLAN 152
+ +R GL P+++ + S K G +
Sbjct: 113 RSVKYPKLLRWMRRMAEELGL--------------CPVDVCLVSAAKGIGMAKVMEAINR 158
Query: 153 Y 153
Y
Sbjct: 159 Y 159
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 33.1 bits (76), Expect = 0.026
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 30 THDLGGHV--QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
+LG +ARRV+ D + + D++ P ++ ++P +
Sbjct: 96 VGELGRLRVEKARRVFYR----ADCGILVTDSA---PTPYEDDVVNLFKE----MEIPFV 144
Query: 88 ILGNKIDIFDAASED 102
++ NKID+ +E+
Sbjct: 145 VVVNKIDVLGEKAEE 159
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 33.1 bits (75), Expect = 0.027
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
+ + F + + +L A T PI+++ K D
Sbjct: 168 LGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCD 209
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 32.5 bits (75), Expect = 0.039
Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 109
D ++ IDA+ + + + + + P++++ NKID+ + + +
Sbjct: 305 DLVLLTIDAAT----GWTTGDQEIY---EQVKHRPLILVMNKIDLVEKQLITSLEYPEN 356
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 32.5 bits (75), Expect = 0.040
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 109
D ++F++DAS P + + L + + + L++ NK+D+ + +E+E+++ G
Sbjct: 325 DIVLFVLDASS----PLDEEDRKIL---ERIKNKRYLVVINKVDVVEKINEEEIKNKLG 376
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 32.1 bits (74), Expect = 0.061
Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDE 103
D I++++D + E+ L A L + NK+D A
Sbjct: 314 DLILYLLDLGTER-LDDELTEIRELK--AAHPAAKFLTVANKLDRAANADALI 363
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 31.3 bits (72), Expect = 0.086
Identities = 9/45 (20%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 50 VDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
V+ ++F+++ + + P+ + L+ L P+++ NK+D
Sbjct: 89 VELVIFVVEGTRWT--PDDEMVLNKL----REGKAPVILAVNKVD 127
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 31.5 bits (72), Expect = 0.087
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 35 GH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESK--YELDSLLADDALTDVPILILGN 91
GH +A+R +D V+ +V + DA R P + Y +D + +IL N
Sbjct: 6 GHIEKAKRQIKDLLRLVNTVVEVRDA----RAPFATSAYGVD-------FSRKETIILLN 54
Query: 92 KIDIFDAASEDEVRHFF 108
K+DI D + + FF
Sbjct: 55 KVDIADEKTTKKWVEFF 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 30.7 bits (70), Expect = 0.15
Identities = 8/50 (16%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLL-ADDALTDVPILILGNKID 94
A + + + + E ++ ++ D+P++++GNK D
Sbjct: 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.6 bits (70), Expect = 0.15
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111
LD++L V +I+ NKID+ + + E+ + +Y
Sbjct: 99 LDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIY 138
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 30.2 bits (69), Expect = 0.17
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 51 DAIVFIIDASDRSRFPESK--YELDSLLADDALTDVPILILGNKID 94
A + + R F S EL +L A + +P L+LGNK+D
Sbjct: 93 HAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 30.2 bits (69), Expect = 0.18
Identities = 12/50 (24%), Positives = 23/50 (46%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95
+ VDA+VF+ D F L + ++VP++++G + I
Sbjct: 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI 131
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 30.2 bits (69), Expect = 0.20
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
IV+ +DR F + L VPI+++GNK D
Sbjct: 83 IVY--SIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 29.9 bits (68), Expect = 0.26
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y + + + ++ F + + + + DVP++++GNK D
Sbjct: 72 YMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCD 120
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.8 bits (68), Expect = 0.28
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 72 LDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 111
+D L ++ +++ NK+D++D +VR +Y
Sbjct: 104 IDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIY 143
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 29.6 bits (67), Expect = 0.28
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 80 ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGL 113
+ PI++ NKIDI + S+ V
Sbjct: 114 VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNY 149
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 29.5 bits (67), Expect = 0.31
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
+ V + D +DR F E + L +V ++++GNK D
Sbjct: 100 EGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 29.4 bits (67), Expect = 0.32
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
YF + + + + ++ F + + +L +VP L++GNK D
Sbjct: 72 YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H';
structural genomics, RRM domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: d.58.7.1
Length = 102
Score = 28.5 bits (64), Expect = 0.34
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 26/72 (36%)
Query: 99 ASEDEVRHFFGLYGLT--------TGK-------EFTS-----------REILQMRPIEL 132
A+E+++ +FF G+ EF + + +Q R +EL
Sbjct: 27 ATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86
Query: 133 FMCSVLKRQGFG 144
F+ S G G
Sbjct: 87 FLNSTAGTSGSG 98
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 29.4 bits (67), Expect = 0.35
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 107
IVF +DR F + L L A D+P++++GNK D+ S +E RH
Sbjct: 81 IVF--SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 135
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 29.2 bits (66), Expect = 0.39
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA 99
R + + YF D ++ + D + F + +D + D A VPI+++GNK DI D A
Sbjct: 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI-EDAAHETVPIMLVGNKADIRDTA 149
Query: 100 SEDEVR 105
+ + +
Sbjct: 150 ATEGQK 155
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.5 bits (67), Expect = 0.42
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 83 DVPILILGNKIDIFDAASEDEVRHFFGLY 111
V LI+ NKID+ D D V +Y
Sbjct: 160 QVEPLIVLNKIDLLDDEGMDFVNEQMDIY 188
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 29.0 bits (66), Expect = 0.44
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y + + +S F + + + +L DVP++++GNK D
Sbjct: 71 YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 29.2 bits (66), Expect = 0.44
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHF 107
IV+ +DR+ F ++ L D+PI+++GNK D+ S E R
Sbjct: 117 IVY--SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.1 bits (66), Expect = 0.45
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
IVF +DR F + L L A D+P++++GNK D
Sbjct: 102 IVF--SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 141
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 29.0 bits (65), Expect = 0.47
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA 99
+ Y+ A + + D + F ++++ + L + A D+ I ++GNKID
Sbjct: 66 ASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEG 124
Query: 100 SEDEV 104
E +V
Sbjct: 125 GERKV 129
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 29.0 bits (66), Expect = 0.48
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y A + + +DR F E +L D P++++GNK D
Sbjct: 77 YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 125
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 28.7 bits (65), Expect = 0.51
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y + + + ++ F + + + DVP++++GNK D
Sbjct: 89 YMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.8 bits (65), Expect = 0.54
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
IV+ +DR+ F ++ L D+PI+++GNK D
Sbjct: 86 IVY--SITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 125
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 29.0 bits (65), Expect = 0.57
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 71 ELDSLLADDALTDVPILILGNKIDIFDAA 99
+L + VPI++ GN A
Sbjct: 143 QLPGMYNKQENARVPIIVTGNDFSTLYAP 171
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 28.8 bits (65), Expect = 0.59
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 51 DAIVFIIDASDRSRFPESKY---ELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRH 106
D V + D + + F E + + P ++LGNKID+ + + +
Sbjct: 82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 141
Query: 107 FF 108
+
Sbjct: 142 WC 143
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 28.6 bits (65), Expect = 0.64
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y + + + ++ F + + + DVP++++GNK D
Sbjct: 71 YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 28.7 bits (65), Expect = 0.65
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 55 FII--DASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
F+ ++ F + + +L +VP L++GNK D
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 28.7 bits (65), Expect = 0.67
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
+ V V + + F + L T VP++++GNK D
Sbjct: 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.3 bits (64), Expect = 0.71
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 51 DAIVFIIDASDRSRFPESKY---ELDSLLADDALTDVPILILGNKIDIFD---AASEDEV 104
D V + D ++ S F K E ++ P +ILGNKID + SE
Sbjct: 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 105 RHF 107
+
Sbjct: 143 QEL 145
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.4 bits (64), Expect = 0.74
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
VF I ++ F + + +L +VP L++GNK D
Sbjct: 91 CVFSI--TEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 28.2 bits (64), Expect = 0.76
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 53 IVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
IV+ +D+ F ++ L DVPI+++GNK D
Sbjct: 78 IVY--SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSD 117
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 28.2 bits (64), Expect = 0.84
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y + + ++ F + K D ++ VP++++GNK+D
Sbjct: 71 YIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 28.4 bits (63), Expect = 0.94
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 11/108 (10%)
Query: 5 DRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF--PAVDAIVFIIDASDR 62
+ + P + + + + +F D GG + + +V ++ D
Sbjct: 77 NVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL-----DS 131
Query: 63 SRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRHFF 108
Y L + + P++++ NKID + ++ F
Sbjct: 132 RTDSNKHYWLRHI--EKYGGKSPVIVVMNKIDENPSYNIEQKKINERF 177
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 27.9 bits (63), Expect = 1.0
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y ++ + + + F K LL +PI+++GNK D
Sbjct: 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKD 122
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 27.9 bits (63), Expect = 1.1
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 51 DAIVFIIDASDRSRFPESKY---ELDSLLADDALTDVPILILGNKIDIFD-AASEDEVRH 106
D + D F E P +ILGNKIDI + S +E +
Sbjct: 81 DCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQA 140
Query: 107 FFGLYG 112
+ G
Sbjct: 141 WCRDNG 146
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 28.1 bits (63), Expect = 1.2
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 19/70 (27%)
Query: 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFM-CSVLKRQ 141
++PI++ GNK+DI D + + F ++ LQ + S
Sbjct: 119 NIPIVLCGNKVDIKDRKVKAK------------SIVFHRKKNLQ------YYDISAKSNY 160
Query: 142 GFGNGFRWLA 151
F F WLA
Sbjct: 161 NFEKPFLWLA 170
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 21/84 (25%)
Query: 32 DLGG-------HVQARRVW----RDYFPA----VDAIVFIIDASDRSRFPESKYELDSLL 76
D+ G + + + +D V ++D + + +
Sbjct: 50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIP 109
Query: 77 ADDAL------TDVPILILGNKID 94
D D+P ++ NK+D
Sbjct: 110 IDVEFYQFLRELDIPTIVAVNKLD 133
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 27.2 bits (60), Expect = 1.7
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 37/85 (43%)
Query: 99 ASEDEVRHFFGLYGLTTGK--------------------EFTS-----------REILQM 127
A+ +EV FFG + TG F +++L
Sbjct: 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGK 94
Query: 128 RPIELFMCS------VLKRQGFGNG 146
R IELF + VL R +G
Sbjct: 95 RYIELFRSTAAEVQQVLNRFSSASG 119
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 104
Score = 26.6 bits (59), Expect = 1.8
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 30/78 (38%)
Query: 99 ASEDEVRHFFGLYGLTTGK-----------------EFTS-----------REILQMRPI 130
S++E+ FF + +F S +E + R I
Sbjct: 27 CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86
Query: 131 ELFMCSV--LKRQGFGNG 146
E+F S ++ G +G
Sbjct: 87 EIFKSSRAEVRTSGPSSG 104
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.5 bits (62), Expect = 1.8
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 50 VDAIVFIIDASDRSRFPE-SKYELDSLLADDALTDVPILILGNKIDIF-DAASEDEVRHF 107
VD V + A P S LD L D+ +I K+D+ D +ED ++ +
Sbjct: 87 VDQAVLVFSAVQ----PSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAY 142
Query: 108 FGLY 111
Y
Sbjct: 143 AEDY 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 27.5 bits (62), Expect = 1.8
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 10/66 (15%)
Query: 53 IVFIIDASDRSRFPESKY-----ELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHF 107
+++++DA+D P E+ + D AL P L+ NK+D+ + + +
Sbjct: 239 LLYVLDAADE---PLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADA 293
Query: 108 FGLYGL 113
GL
Sbjct: 294 LAREGL 299
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLL--ADDALTDVPILILGNKID 94
A + + + R E K + + D +PI+++GNK D
Sbjct: 71 SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV-ESIPIMLVGNKCD 120
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 26.9 bits (60), Expect = 2.4
Identities = 8/72 (11%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
P++++G +D+ D KE ++ F+ + +
Sbjct: 112 SSPVILVGTHLDVSDEKQRKACMS-------KITKELLNKRGFPAIRDYHFVNATEESDA 164
Query: 143 FGNGFRWLANYI 154
+ + N
Sbjct: 165 LAKLRKTIINES 176
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 91
Score = 26.1 bits (58), Expect = 2.4
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 26/70 (37%)
Query: 99 ASEDEVRHFFGLY------------GLTTGK---EFTS-----------REILQMRPIEL 132
+E V F G TG +F++ RE + R IE+
Sbjct: 22 VTEKNVMEFLAPLKPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEV 81
Query: 133 FMCSVLKRQG 142
F G
Sbjct: 82 FREKSGPSSG 91
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 26.9 bits (60), Expect = 2.6
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 35 GHVQ-ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKI 93
GH+ ARR + +D + ++DA R P S + + +D L + P ++L NK
Sbjct: 8 GHMAKARREVTEKLKLIDIVYELVDA----RIPMSSR---NPMIEDILKNKPRIMLLNKA 60
Query: 94 DIFDAASEDEVRHFF 108
D DAA + + F
Sbjct: 61 DKADAAVTQQWKEHF 75
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA
recognition motif, G-tract, G-quadruplex, alternative,
splicing, RNA binding protein; NMR {Homo sapiens} PDB:
2kfy_A
Length = 136
Score = 26.5 bits (58), Expect = 2.9
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 36/80 (45%)
Query: 99 ASEDEVRHFFGLYGLTTGK-------------------EFTSREILQM-----------R 128
S ++V++F + G E S + ++M R
Sbjct: 56 CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHR 115
Query: 129 PIELFMCS------VLKRQG 142
IE+F VLK G
Sbjct: 116 YIEVFKSHRTEMDWVLKHSG 135
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 26.7 bits (60), Expect = 2.9
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 46 YFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
Y D + + +D++ F +L P++++ NK+D
Sbjct: 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVD 134
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.00A {Homo sapiens} PDB:
2ek6_A
Length = 95
Score = 25.7 bits (57), Expect = 3.1
Identities = 13/68 (19%), Positives = 18/68 (26%), Gaps = 29/68 (42%)
Query: 98 AASEDEVRHFFGLYGLT----------TGK-------EFTSREILQM------------R 128
S DE+ FF Y + G F SR+ R
Sbjct: 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85
Query: 129 PIELFMCS 136
++L S
Sbjct: 86 KVKLSGPS 93
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 26.7 bits (60), Expect = 3.3
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 20/70 (28%)
Query: 51 DAIVFIIDASDRSRFPESKYELDSLLADDAL-------TDVPILILGNKIDIFDAASEDE 103
D ++F++D + +D + V +++ NK + +
Sbjct: 83 DLVLFVVDGKR------------GITKEDESLADFLRKSTVDTILVANKAENLREFEREV 130
Query: 104 VRHFFGLYGL 113
+ L G
Sbjct: 131 KPELYSL-GF 139
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif,
G-tract, G-quadruplex, alternative splicing, RNA binding
protein; NMR {Homo sapiens} PDB: 2kg1_A
Length = 139
Score = 26.0 bits (57), Expect = 3.8
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 26/64 (40%)
Query: 99 ASEDEVRHFFGLYGLTT--------GK-------EFTS-----------REILQMRPIEL 132
A+E+++ +FF G+ EF + R +Q R IEL
Sbjct: 58 ATENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIEL 117
Query: 133 FMCS 136
F+ S
Sbjct: 118 FLNS 121
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel, nucleus,
transport, gated channel; 1.95A {Homo sapiens} PDB:
3kjy_A
Length = 250
Score = 26.5 bits (58), Expect = 4.0
Identities = 12/120 (10%), Positives = 29/120 (24%), Gaps = 14/120 (11%)
Query: 38 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD 97
++ D F A + + + + L + + G +
Sbjct: 120 ESNTAGNDVFHKFSAFIKNPVPAQDEALYQQLLRALARLDSYLRAPLEHELAG------E 173
Query: 98 AASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG--NGFRWLANYID 155
+ R F G T + + + + + R + Y+D
Sbjct: 174 PQLRESRRRFLD------GDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLD 227
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 118
Score = 25.7 bits (56), Expect = 4.6
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 36/83 (43%)
Query: 99 ASEDEVRHFFGLYGLTTGK-------------------EFTSREILQM-----------R 128
S ++V++F + G E S + +++ R
Sbjct: 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHR 88
Query: 129 PIELFMCS------VLKRQGFGN 145
IE+F VLK G +
Sbjct: 89 YIEVFKSHRTEMDWVLKHSGPNS 111
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 25.9 bits (58), Expect = 5.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 83 DVPILILGNKIDIFD--AASEDEVRHF 107
D+P ++ NKID+ D +E
Sbjct: 109 DIPTALVQNKIDLLDDSCIKNEEAEGL 135
>3big_A Fructose-1,6-bisphosphatase class II GLPX; carbohydrate metabolism,
hydrolase manganese; 1.85A {Escherichia coli} PDB:
2r8t_A 3bih_A 1ni9_A 3d1r_A*
Length = 338
Score = 26.1 bits (58), Expect = 5.6
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 33 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDSLLADD 79
L G + R + R + I + +R L + D
Sbjct: 226 LDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD 278
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 25.5 bits (56), Expect = 5.8
Identities = 5/79 (6%), Positives = 19/79 (24%), Gaps = 28/79 (35%)
Query: 99 ASEDEVRHFFGLYGLT----------TGK-------EFTSREILQM-----------RPI 130
++ +V F + G+ +F + + + R
Sbjct: 27 ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREA 86
Query: 131 ELFMCSVLKRQGFGNGFRW 149
+ + ++ +
Sbjct: 87 FVHVVTLEDMREIEKNPPA 105
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 25.8 bits (57), Expect = 7.0
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 45 DYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID--IFDAASED 102
FI A D K +L + ++ + L G I +FD A E
Sbjct: 1134 QQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEA 1193
Query: 103 EVRHFFGLYGL-TTGK 117
E++ L L T+G+
Sbjct: 1194 EIKELLKLGDLPTSGQ 1209
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 25.6 bits (57), Expect = 7.2
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 76 LADDALTDVPILILGNKID 94
+++++ T + ++GNKID
Sbjct: 108 VSEESETQPLVALVGNKID 126
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 25.4 bits (56), Expect = 7.6
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 51 DAIVFII--DASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFD--AASEDEVRH 106
D+ V ++ D ++ + F ++ +D + + +DV I+++GNK D+ D S +E
Sbjct: 88 DSTVAVVVYDITNVNSFQQTTKWIDDV-RTERGSDVIIMLVGNKTDLADKRQVSIEEGER 146
Query: 107 F 107
Sbjct: 147 K 147
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 24.6 bits (54), Expect = 7.9
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 29/68 (42%)
Query: 98 AASEDEVRHFFGLYGLT----------TGK-------EFTSRE-----ILQM-------R 128
S DE+ FF Y + G F SR+ ++ + R
Sbjct: 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85
Query: 129 PIELFMCS 136
++L + S
Sbjct: 86 KVKLVLGS 93
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif,
U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein;
2.50A {Homo sapiens}
Length = 143
Score = 25.2 bits (55), Expect = 8.5
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 87 LILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGF 143
+ + N + E ++++ FG Y +F+S M I L +K Q F
Sbjct: 48 IYVKN---LAKHVQEKDLKYIFGRYV-----DFSSETQRIMFDIRLMKEGRMKGQAF 96
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 25.3 bits (56), Expect = 8.7
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 3/34 (8%)
Query: 77 ADDALTDVPILILGNKIDIFD---AASEDEVRHF 107
D + +++ NK D+ D + +
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW 159
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll
biosynthesis, photosynthesis; 7.50A {Rhodobacter
capsulatus}
Length = 189
Score = 25.3 bits (55), Expect = 9.0
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 52 AIVFIIDAS---DRSRFPESKYELDSLLAD 78
++F +DAS +R E+K ++ LL
Sbjct: 7 VLIFAVDASGSAAVARLSEAKGAVELLLGR 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.427
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,505,842
Number of extensions: 148122
Number of successful extensions: 808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 754
Number of HSP's successfully gapped: 140
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)