RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2161
(155 letters)
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 82.8 bits (203), Expect = 4e-21
Identities = 96/154 (62%), Positives = 121/154 (78%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK+DR QH+PTLHPTSEEL++ + FTT DLGGH+QARRVW++Y PA++ IVF++D +D
Sbjct: 33 LKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCAD 92
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R ESK ELDSL+ D+ + +VPILILGNKID +A SE+ +R FGLYG TTGK S
Sbjct: 93 HERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 152
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYID 155
+ L RP+E+FMCSVLKRQG+G GFRW+A YID
Sbjct: 153 LKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 186
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 69.0 bits (167), Expect = 5e-16
Identities = 81/152 (53%), Positives = 104/152 (68%), Gaps = 5/152 (3%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+D
Sbjct: 20 LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAAD 79
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
RF E++ ELD+L L DVP +ILGNKID +A SE E+R GL T +
Sbjct: 80 PERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIE- 138
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANY 153
RP+E+FMCSV+ R G+ F+WL+ Y
Sbjct: 139 ----GQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 66.9 bits (162), Expect = 3e-15
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
L ++ + PT + + D+GG + R WR YF D ++++ID++D
Sbjct: 36 LASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R RF E+ EL LL ++ L+ VP+LI NK D+ AA E+ L
Sbjct: 96 RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNL----------- 144
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ R ++ CS L +G +G W+ +
Sbjct: 145 -HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 65.4 bits (158), Expect = 1e-14
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK ++ +PT+ E ++ ++ F D+GG + R +WR Y+ ++F++D +D
Sbjct: 32 LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ EL ++ D + D ILI NK D+ DA E++ GL
Sbjct: 92 RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGL----------- 140
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ R + G G WL +
Sbjct: 141 -TRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 60.1 bits (144), Expect = 8e-13
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
LK +PT+ E + +I FT D+GG + R +WR YF ++F++D++D
Sbjct: 20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND 79
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R E++ EL +LA+D L D +L+ NK D+ +A + E+ GL
Sbjct: 80 RERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL----------- 128
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
L+ R + G G WL+N +
Sbjct: 129 -HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 60.8 bits (146), Expect = 9e-13
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
L+ PT+ E LS ++ DLGG R WR Y+ A++F++D++
Sbjct: 36 RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDST 95
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D+ R + EL +L ++ L D +L+ NK D A S EV L L
Sbjct: 96 DKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVEL------- 148
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ R + S +K +G G WL + I
Sbjct: 149 -----KDRSWSIVASSAIKGEGITEGLDWLIDVI 177
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 59.6 bits (143), Expect = 2e-12
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ PT+ EE+ + + F D+GG R W Y+ + ++ ++D++D
Sbjct: 35 FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD 94
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R ++ EL +LA + L +LI NK D+ + + E+ F L
Sbjct: 95 RERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL----------- 143
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
++ + C L +G G W+ + +
Sbjct: 144 -TSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 53.5 bits (127), Expect = 3e-10
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
+ PTL + L D+GG R WR+YF + D +++++D++D
Sbjct: 22 FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD 81
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R + + EL SLL ++ L +LI NK D+ A S + ++ L +
Sbjct: 82 RQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSI-------- 133
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ + CS + + G WL + I
Sbjct: 134 ----RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 54.0 bits (129), Expect = 4e-10
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
++K R + T + + + F D+GG RR W F V AI+F++ +S
Sbjct: 22 IVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASS 81
Query: 61 ----------DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDA---ASEDEVRHF 107
+R E+ S+ + L + +++ NK D+ A + ++ +
Sbjct: 82 SYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDY 141
Query: 108 FGLYG 112
F +
Sbjct: 142 FPEFA 146
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 47.0 bits (110), Expect = 7e-08
Identities = 40/154 (25%), Positives = 69/154 (44%), Gaps = 12/154 (7%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ +PT+ +++ G++ D+GG + R +W Y V AIV+++DA+
Sbjct: 22 IASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81
Query: 61 DRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 120
D+ + SK EL +LL L +P+L+LGNK D+ A E E+ L
Sbjct: 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNL---------- 131
Query: 121 SREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+Q R I + S ++ +WL +
Sbjct: 132 --SAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 47.3 bits (111), Expect = 9e-08
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV----WRDYFPAVDAIVFII 57
L + ++ +S + + + L + + + A+VF++
Sbjct: 20 LLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV 79
Query: 58 DASDRSRFPES-KYELDSLLADDALTD--VPILILGNKIDIFDAASEDEVR 105
D++ R + L +L D +LI NK DI A S ++
Sbjct: 80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQ 130
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 41.8 bits (97), Expect = 6e-06
Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 19/135 (14%)
Query: 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82
V D G Q + Y + + ++ F + K D ++
Sbjct: 48 SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE 107
Query: 83 DVPILILGNKIDI--FDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKR 140
VP++++GNK+D+ S E R +G S +
Sbjct: 108 KVPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFMETSAKSK 150
Query: 141 QGFGNGFRWLANYID 155
F + ++
Sbjct: 151 TMVDELFAEIVRQMN 165
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 40.8 bits (94), Expect = 1e-05
Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 2 LKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 61
L+ +PT+ E ++ ++ F DLGG R WR Y+ DA+++++D+ D
Sbjct: 25 LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCD 84
Query: 62 RSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTS 121
R R SK EL ++L ++ L +++ NK D+ A + E+ + G
Sbjct: 85 RDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLG------------ 132
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
L+ R ++F S K G WL +
Sbjct: 133 LPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 39.8 bits (92), Expect = 5e-05
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 36 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDI 95
+ARR + +D + ++DA R P S + ++ D L + P ++L NK D
Sbjct: 2 MAKARREVTEKLKLIDIVYELVDA----RIPMS--SRNPMIE-DILKNKPRIMLLNKADK 54
Query: 96 FDAASEDEVRHFFGLYG 112
DAA + + F G
Sbjct: 55 ADAAVTQQWKEHFENQG 71
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 38.7 bits (89), Expect = 7e-05
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
D G + RR+ Y+ + + D + + + L L D A +++ I+
Sbjct: 55 AQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIM 113
Query: 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147
++GNK D+ + + + S L F
Sbjct: 114 LVGNKSDLRHLRAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAF 158
Query: 148 RWLANYI 154
+ + I
Sbjct: 159 KNILTEI 165
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 38.2 bits (88), Expect = 1e-04
Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 25 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDV 84
I D G + R + Y+ I+ + D ++ F + + ++ + DV
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADV 112
Query: 85 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144
+ILGNK D+ D + R + I+ S
Sbjct: 113 EKMILGNKCDVNDKRQVSKERGEK---------------LALDYGIKFMETSAKANINVE 157
Query: 145 NGFRWLANYI 154
N F LA I
Sbjct: 158 NAFFTLARDI 167
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 36.7 bits (84), Expect = 3e-04
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 21/157 (13%)
Query: 2 LKNDRTAQHMPTLHPTSE----ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 57
+++ + T+ + +++ + D G + R + Y+ I+ +
Sbjct: 23 VEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82
Query: 58 DASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 117
D +D F + + + + A + +L++GNK D+ +
Sbjct: 83 DITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTAD-------------- 127
Query: 118 EFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ + I S F LA I
Sbjct: 128 --QGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 36.8 bits (84), Expect = 3e-04
Identities = 22/140 (15%), Positives = 40/140 (28%), Gaps = 15/140 (10%)
Query: 15 HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDS 74
P + D G + R + +F + + D + + F + +
Sbjct: 53 GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 112
Query: 75 LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFM 134
L A+ + I+++GN L E +RE+ I F
Sbjct: 113 LQANAYCENPDIVLIGN---------------KADLPDQREVNERQARELADKYGIPYFE 157
Query: 135 CSVLKRQGFGNGFRWLANYI 154
S Q L + I
Sbjct: 158 TSAATGQNVEKAVETLLDLI 177
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 35.3 bits (80), Expect = 0.001
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 15/127 (11%)
Query: 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
D G + +YF + + + + ++ F + + +L +VP L
Sbjct: 54 IDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFL 113
Query: 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147
++GNK D+ D + S R F
Sbjct: 114 LVGNKSDLEDKRQVSVEEAKN---------------RADQWNVNYVETSAKTRANVDKVF 158
Query: 148 RWLANYI 154
L I
Sbjct: 159 FDLMREI 165
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 33.7 bits (76), Expect = 0.005
Identities = 21/146 (14%), Positives = 40/146 (27%), Gaps = 16/146 (10%)
Query: 9 QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPES 68
+ + D G + R + Y+ ++ + D + R F +
Sbjct: 39 TIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL 98
Query: 69 KYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMR 128
L+ L D+ +++GNKID + + F +
Sbjct: 99 DNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKF----------------ARKH 142
Query: 129 PIELFMCSVLKRQGFGNGFRWLANYI 154
+ S G F L I
Sbjct: 143 SMLFIEASAKTCDGVQCAFEELVEKI 168
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 33.3 bits (75), Expect = 0.006
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 16/132 (12%)
Query: 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82
I D G + R + Y+ + + D ++ F + + +
Sbjct: 51 DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI-KTYSWD 109
Query: 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
+ +L++GNK D+ D R ++ E F S
Sbjct: 110 NAQVLLVGNKCDMEDERVVSSERGR---------------QLADHLGFEFFEASAKDNIN 154
Query: 143 FGNGFRWLANYI 154
F L + I
Sbjct: 155 VKQTFERLVDVI 166
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 33.0 bits (74), Expect = 0.007
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 16/152 (10%)
Query: 3 KNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 62
K+D + + D G + R V R Y+ + + D + R
Sbjct: 31 KDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSR 90
Query: 63 SRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSR 122
+ L + ++ I++ GNK D+ +
Sbjct: 91 ETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDADREVTFLEAS--------------- 134
Query: 123 EILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
Q + S L + F A I
Sbjct: 135 RFAQENELMFLETSALTGENVEEAFVQCARKI 166
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 33.0 bits (74), Expect = 0.007
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 28 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPIL 87
D G + + Y + + + ++ F + + + DVP++
Sbjct: 53 LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 88 ILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGF 147
++GNK D+ E ++ + I S RQG + F
Sbjct: 113 LVGNKCDLAARTVESRQAQ----------------DLARSYGIPYIETSAKTRQGVEDAF 156
Query: 148 RWLANYI 154
L I
Sbjct: 157 YTLVREI 163
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 33.1 bits (74), Expect = 0.008
Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 8/101 (7%)
Query: 13 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF----PAVDAIVFIIDAS-DRSRFPE 67
T D GHV+ R DY V ++F++D++ D +
Sbjct: 33 VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT 92
Query: 68 SK---YELDSLLADDALTDVPILILGNKIDIFDAASEDEVR 105
+ ++ S+ + ILI NK ++F A +++
Sbjct: 93 TAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIK 133
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 32.2 bits (72), Expect = 0.014
Identities = 26/153 (16%), Positives = 44/153 (28%), Gaps = 20/153 (13%)
Query: 4 NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 63
D E+S I D G + R V R Y+ + + D + RS
Sbjct: 31 ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRS 90
Query: 64 RFPESKYELDSLLADDALTDVPILILGNKID--IFDAASEDEVRHFFGLYGLTTGKEFTS 121
+ L + + I+++GNK D + +E + F G
Sbjct: 91 TYNHLSSWLTDAR-NLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG--------- 140
Query: 122 REILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ S + + F A I
Sbjct: 141 --------LLFLEASAKTGENVEDAFLEAAKKI 165
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 31.1 bits (69), Expect = 0.038
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 40 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAA 99
R+ +P D + + F + + + + PI+++G K+D+ D
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDK 125
Query: 100 SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
E L ++ ++ CS L ++G F +
Sbjct: 126 DTIEKLKEKKLT--PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.0 bits (66), Expect = 0.087
Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 8/157 (5%)
Query: 2 LKNDRTAQHMPTLH--PTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 59
+ +++PT+ G + R + + I +
Sbjct: 30 ANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 89
Query: 60 SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTT--GK 117
++ E + +VP L++G +ID+ D + + G+
Sbjct: 90 VVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 149
Query: 118 EFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ ++EI +E CS L ++G F I
Sbjct: 150 KL-AKEIGACCYVE---CSALTQKGLKTVFDEAIIAI 182
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.0 bits (61), Expect = 0.41
Identities = 20/152 (13%), Positives = 45/152 (29%), Gaps = 4/152 (2%)
Query: 2 LKNDRTAQHMPTL--HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 59
N ++++PT+ + + G+ + R + + +
Sbjct: 24 TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 83
Query: 60 SDRSRFPESKYELDSLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 119
E+ E P L++G +ID+ D + E
Sbjct: 84 VVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD--DPSTIEKLAKNKQKPITPET 141
Query: 120 TSREILQMRPIELFMCSVLKRQGFGNGFRWLA 151
+ ++ ++ CS L ++G N F
Sbjct: 142 AEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.9 bits (61), Expect = 0.46
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVP 85
+ D G + R V Y+ A++ + D ++++ F + L +
Sbjct: 56 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 115
Query: 86 ILILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFG 144
+L+ + ++ YG + S
Sbjct: 116 MLLGNKVDSAHERVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVD 158
Query: 145 NGFRWLANYI 154
F +A +
Sbjct: 159 LAFTAIAKEL 168
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 26.9 bits (58), Expect = 0.99
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 13/120 (10%)
Query: 35 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
G + + Y+ A + + D + F ++++ + L + D+ I ++GNKID
Sbjct: 61 GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKID 119
Query: 95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ E +V ++ + + + F S + + F + I
Sbjct: 120 MLQEGGERKVARE------------EGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 1.3
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 16/132 (12%)
Query: 23 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALT 82
+ F D G + + Y+ A + + D ++ F +K + L +
Sbjct: 52 DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-P 110
Query: 83 DVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQG 142
++ I + GNK D+ + + D + S
Sbjct: 111 NIVIALSGNKADLANKRAVDFQEAQS---------------YADDNSLLFMETSAKTSMN 155
Query: 143 FGNGFRWLANYI 154
F +A +
Sbjct: 156 VNEIFMAIAKKL 167
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 25.7 bits (55), Expect = 2.2
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 16/124 (12%)
Query: 31 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILG 90
D G + + Y+ + + + D +D F + K + L ++
Sbjct: 57 WDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV-- 114
Query: 91 NKIDIFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWL 150
+ L + + + + S + +G F L
Sbjct: 115 --------------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL 160
Query: 151 ANYI 154
+
Sbjct: 161 CKRM 164
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.0 bits (53), Expect = 3.7
Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 15/120 (12%)
Query: 35 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDSLLADDALTDVPILILGNKID 94
G + + Y A + + +DR F E +L D P++++GNK D
Sbjct: 63 GQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122
Query: 95 IFDAASEDEVRHFFGLYGLTTGKEFTSREILQMRPIELFMCSVLKRQGFGNGFRWLANYI 154
+ + F S R F L +
Sbjct: 123 LESQRQVPRSEASA---------------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 24.8 bits (53), Expect = 6.3
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 72 LDSLLADDALTDVPILILGNKIDIFDAASEDEV-RHF 107
SL +D +P IL ID+ + E +V
Sbjct: 20 AASL--EDLFAHLPKEILSPPIDLPEPLPEWKVLEEL 54
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 24.2 bits (51), Expect = 7.6
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 26 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE 67
+V T H + + R A++ + +R E
Sbjct: 133 VVATIPIRDVHPLVKEIRRLP----GAVLIELTPENRDVILE 170
>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
smegmatis [TaxId: 1772]}
Length = 265
Score = 24.3 bits (51), Expect = 8.6
Identities = 8/68 (11%), Positives = 16/68 (23%)
Query: 1 MLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 60
+ +T P + + H + WR +F + +D
Sbjct: 151 FWRAVQTRVWRGRPDPVRDARAEYHAGAIAHVITMLRAQEEGWRAWFTEENVEPIDVDYP 210
Query: 61 DRSRFPES 68
R
Sbjct: 211 YLWRNLTE 218
>g1avo.1 a.24.8.1 (A:,B:) Proteasome activator reg(alpha) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 200
Score = 24.0 bits (52), Expect = 9.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 62 RSRFPESKYELDSLLADDAL 81
S FP+ ELD+ L + AL
Sbjct: 27 GSYFPKKISELDAFLKEPAL 46
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.427
Gapped
Lambda K H
0.267 0.0658 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 606,780
Number of extensions: 27116
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 44
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (22.8 bits)