BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2163
(188 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1
Length = 585
Score = 114 bits (284), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL++ E +++L+ YYII F YR AL E Q +FE+L YC ++IP+SFVLG
Sbjct: 24 WRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
FYV+LVV RWW QY LPWPD L VS + G
Sbjct: 84 FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P+SFVLGFYV+LVV RWW QY LPWPD L VS + G
Sbjct: 77 PISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116
>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1
Length = 585
Score = 113 bits (282), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 65/93 (69%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL++ E ++L+ YYII F YR AL E Q +FE+L YC ++IP+SFVLG
Sbjct: 24 WRGSIYKLLYGEFFIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
FYV+LVV RWW QY LPWPD L VS + G
Sbjct: 84 FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P+SFVLGFYV+LVV RWW QY LPWPD L VS + G
Sbjct: 77 PISFVLGFYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116
>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1
Length = 669
Score = 109 bits (273), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 74/115 (64%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL++RE +V+ V+Y I+ YR L + +R FE+L YC + E IP++FVLG
Sbjct: 24 WRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGAQKRYFEKLSIYCDRYAEQIPVTFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLI 115
FYV+LVV RWW Q+ LPWPD L L +S+++ G L+ L Y T L+
Sbjct: 84 FYVTLVVNRWWNQFVNLPWPDRLMLLISSSVHGSDQHGRLLRRTLMRYVNLTSLL 138
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P++FVLGFYV+LVV RWW Q+ LPWPD L L +S+++ G
Sbjct: 77 PVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMLLISSSVHG 116
>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1
Length = 509
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 63/93 (67%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL+WREL+ +L Y ++ YRF L E +R FE+L YC + +IP+SFVLG
Sbjct: 24 WRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKRYFEKLVIYCDQYASLIPVSFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
FYV+LVV RWW QY +P PD L V+ + G
Sbjct: 84 FYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHG 116
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P+SFVLGFYV+LVV RWW QY +P PD L V+ + G
Sbjct: 77 PVSFVLGFYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHG 116
>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1
Length = 508
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 64/93 (68%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL+WREL+ +L +Y ++ YRF L E +R FE+L YC + +IP+SFVLG
Sbjct: 24 WRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEKLVIYCDQYASLIPVSFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
FYV+LVV RWW QY +P PD L V+ + G
Sbjct: 84 FYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHG 116
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P+SFVLGFYV+LVV RWW QY +P PD L V+ + G
Sbjct: 77 PVSFVLGFYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHG 116
>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1
Length = 668
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 72/115 (62%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL++RE +V+ V+Y I+ YR L +R FE+L YC + E IP++FVLG
Sbjct: 24 WRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKRYFEKLSIYCDRYAEQIPVTFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLI 115
FYV+LVV RWW Q+ LPWPD L +S+++ G L+ L Y T L+
Sbjct: 84 FYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEHGRLLRRTLMRYVNLTSLL 138
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P++FVLGFYV+LVV RWW Q+ LPWPD L +S+++ G
Sbjct: 77 PVTFVLGFYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHG 116
>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3
Length = 551
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 64/93 (68%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL++ E +V++ +YY I YR L Q LFE+L YC ++IP+SFVLG
Sbjct: 24 WRGSIYKLLYGEFLVFIFLYYSIRGLYRMVLSSDQQLLFEKLALYCDSYIQLIPISFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
FYV+LVV RWW QY LPWPD L + VS+ + G
Sbjct: 84 FYVTLVVSRWWSQYENLPWPDRLMIQVSSFVEG 116
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 31/40 (77%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P+SFVLGFYV+LVV RWW QY LPWPD L + VS+ + G
Sbjct: 77 PISFVLGFYVTLVVSRWWSQYENLPWPDRLMIQVSSFVEG 116
>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1
Length = 473
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 68/94 (72%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+YKL+++E +++ +Y +++ TYR L + + ++ ++ +YC + ++IP+SFVLG
Sbjct: 24 WRGSIYKLLYKEFLLFGALYAVLSITYRLLLTQEQRYVYAQVARYCNRSADLIPLSFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
FYV+LVV RWW QY +P PD L +SA++ GV
Sbjct: 84 FYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGV 117
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 171
P+SFVLGFYV+LVV RWW QY +P PD L +SA++ GV
Sbjct: 77 PLSFVLGFYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGV 117
>sp|P34319|YKT8_CAEEL Uncharacterized protein C07A9.8 OS=Caenorhabditis elegans
GN=C07A9.8 PE=3 SV=2
Length = 453
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 65/94 (69%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS+++ V++EL+V++ Y +++ YRFAL S + +FER +YC + +P++FVLG
Sbjct: 67 WRGSLWQAVYKELIVWICAYSLVSVIYRFALTRSQKDIFERFGEYCDARMGYLPLNFVLG 126
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
F+ +++++RW + Y L D +ALFVSA + G
Sbjct: 127 FFCNIIIRRWLKLYTSLGNIDNIALFVSAYVRGT 160
Score = 43.5 bits (101), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 122 YLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 171
Y A P++FVLGF+ +++++RW + Y L D +ALFVSA + G
Sbjct: 111 YCDARMGYLPLNFVLGFFCNIIIRRWLKLYTSLGNIDNIALFVSAYVRGT 160
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans
GN=ZK688.2 PE=3 SV=1
Length = 632
Score = 85.5 bits (210), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 60/93 (64%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS++K V EL V+LV+Y I++ YR AL QR FER+ +YC + IP++F+LG
Sbjct: 24 WRGSIWKAVILELAVWLVLYGILSVIYRTALNPGQQRTFERIVQYCDSRLSYIPLNFMLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
F+V+ VV RW Y+++ + D + L + + G
Sbjct: 84 FFVTAVVNRWTYLYQIIGFIDNIGLMAAEYVRG 116
Score = 37.4 bits (85), Expect = 0.054, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 59 LGFYVSLVVKRWWEQYRLL-PWPDT------LALFVSAAIPGVVSVVF--LIFPLLQNYE 109
+ + +++ + W ++LL W + L L V + G++SV++ + P Q
Sbjct: 3 INYNLAVSTSKPWTLFKLLLKWRGSIWKAVILELAVWLVLYGILSVIYRTALNPGQQRTF 62
Query: 110 KKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIP 169
++ V ++Y+ P++F+LGF+V+ VV RW Y+++ + D + L + +
Sbjct: 63 ERIVQYCDSRLSYI-------PLNFMLGFFVTAVVNRWTYLYQIIGFIDNIGLMAAEYVR 115
Query: 170 G 170
G
Sbjct: 116 G 116
>sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4 OS=Caenorhabditis elegans
GN=F32G8.4 PE=3 SV=3
Length = 405
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 62/98 (63%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS++K V ++L+ + + YYI+ + L E + F +C + IP+SF+LG
Sbjct: 16 WRGSIWKAVLKDLIGFYIAYYIVLAFQWYLLDEKGKEYFTGWIMWCEIGAQYIPLSFLLG 75
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVV 98
F+VSL+V RWWEQ+ + WPD + + VSA +PG ++V
Sbjct: 76 FFVSLIVARWWEQFNCISWPDKMMIMVSACLPGNENMV 113
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVV 175
P+SF+LGF+VSL+V RWWEQ+ + WPD + + VSA +PG ++V
Sbjct: 69 PLSFLLGFFVSLIVARWWEQFNCISWPDKMMIMVSACLPGNENMV 113
>sp|Q17529|YQE4_CAEEL Uncharacterized protein B0564.4 OS=Caenorhabditis elegans
GN=B0564.4 PE=3 SV=2
Length = 421
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 61/94 (64%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
W+GS++K ++ E +++L+ Y II+ YR A+ E QR FE + +YC K+ IP+ FVLG
Sbjct: 24 WKGSIWKAIYMETIIFLICYGIISVVYRTAMSEPSQRTFESVIRYCDKRLSFIPLEFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
F+V++VV RW + +R + + D + L + + G
Sbjct: 84 FFVTIVVDRWTKLWRTVGFIDDVCLLANLYVRGT 117
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 171
P+ FVLGF+V++VV RW + +R + + D + L + + G
Sbjct: 77 PLEFVLGFFVTIVVDRWTKLWRTVGFIDDVCLLANLYVRGT 117
>sp|Q17528|YQE3_CAEEL Uncharacterized protein B0564.3 OS=Caenorhabditis elegans
GN=B0564.3 PE=3 SV=1
Length = 450
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
W+GS++K V+ E +++L+ Y II+ Y+ A+ ES QR FE L +Y K+ IP+ FVLG
Sbjct: 24 WKGSIWKAVYMETIIFLICYGIISVIYKTAMGESSQRTFESLVRYFDKRLSYIPLEFVLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVS 96
F+V+ VV RW + Y+ + + D + L + I G
Sbjct: 84 FFVTTVVNRWTKLYQTIGFIDNVGLMANCYIRGATE 119
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVS 173
P+ FVLGF+V+ VV RW + Y+ + + D + L + I G
Sbjct: 77 PLEFVLGFFVTTVVNRWTKLYQTIGFIDNVGLMANCYIRGATE 119
>sp|O45435|YV4Q_CAEEL Uncharacterized protein F32B6.9 OS=Caenorhabditis elegans
GN=F32B6.9 PE=3 SV=1
Length = 413
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 9/92 (9%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIE---------SHQRLFERLQKYCAKKTE 51
W+GS+++ W+EL++YL++YY + Y + +R+FE + C T
Sbjct: 16 WKGSIWRTAWKELLIYLILYYSVRVFYLKGIDLIDDDEDDRLKMRRMFETFCRQCDSYTR 75
Query: 52 VIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTL 83
+IP++F+LGFYVS VV RWW Q+ L WP+ +
Sbjct: 76 LIPLTFLLGFYVSNVVARWWRQFETLYWPEDI 107
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTL 160
P++F+LGFYVS VV RWW Q+ L WP+ +
Sbjct: 78 PLTFLLGFYVSNVVARWWRQFETLYWPEDI 107
>sp|Q22566|YSV1_CAEEL Uncharacterized protein T19C3.1 OS=Caenorhabditis elegans
GN=T19C3.1 PE=3 SV=2
Length = 501
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 61/93 (65%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGS++K V +L V+L+ YY I F YR+A + Q +FE + + + + +P++F+LG
Sbjct: 46 WRGSIWKSVVGDLFVWLLFYYAIYFAYRYAFSKQLQTVFEEISIHTDDRMKYLPLTFMLG 105
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
F+V+ V +RW ++P+ +++AL V+ +PG
Sbjct: 106 FFVTTVFERWRSALNVMPFIESVALSVAVLLPG 138
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
P++F+LGF+V+ V +RW ++P+ +++AL V+ +PG
Sbjct: 99 PLTFMLGFFVTTVFERWRSALNVMPFIESVALSVAVLLPG 138
>sp|O18303|YHS4_CAEEL Uncharacterized protein ZK849.4 OS=Caenorhabditis elegans
GN=ZK849.4 PE=3 SV=2
Length = 602
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 62/103 (60%), Gaps = 8/103 (7%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYR-----FALIESHQRLFERLQKYCAKKTEVIPM 55
W GS+ K +W+E +++V+Y++I F YR F + +++ E + + IP+
Sbjct: 37 WHGSLVKSIWKEYAIWIVLYHLILFIYRVVMPIFGWADYCKKVIE---NWTPHQDMTIPL 93
Query: 56 SFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVV 98
F+LGF+V+ V+ RW + ++ +P+ + A V+AAIPG + ++
Sbjct: 94 EFLLGFFVTTVIDRWRKAFQNIPYIEICAFAVAAAIPGRIRII 136
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 14/118 (11%)
Query: 58 VLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGL 117
++ ++ +VK W++Y + L LF+ VV IF +Y KK +
Sbjct: 33 IMSYWHGSLVKSIWKEYAIWIVLYHLILFI-------YRVVMPIFGW-ADYCKKVIENWT 84
Query: 118 DHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVV 175
H ++ P+ F+LGF+V+ V+ RW + ++ +P+ + A V+AAIPG + ++
Sbjct: 85 PH------QDMTIPLEFLLGFFVTTVIDRWRKAFQNIPYIEICAFAVAAAIPGRIRII 136
>sp|Q23369|YHDI_CAEEL Uncharacterized protein ZC518.1 OS=Caenorhabditis elegans
GN=ZC518.1 PE=2 SV=1
Length = 499
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEV-IPMSFVL 59
WRGSV+K V+ +L V+ ++ +I+ YR+ L S Q +FE+L +Y K + IP++F+L
Sbjct: 24 WRGSVWKAVFGQLAVWTAVFLLISCIYRYMLSPSQQDVFEQLIRYFDNKLDANIPLTFLL 83
Query: 60 GFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
GF+VS VV RW + W D +L + I G
Sbjct: 84 GFFVSFVVARWGSILNGIGWIDDASLLFATYIRGA 118
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 171
P++F+LGF+VS VV RW + W D +L + I G
Sbjct: 78 PLTFLLGFFVSFVVARWGSILNGIGWIDDASLLFATYIRGA 118
>sp|P34577|YNX4_CAEEL Uncharacterized protein T20G5.4 OS=Caenorhabditis elegans
GN=T20G5.4 PE=3 SV=2
Length = 456
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 57/93 (61%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
WRGSV+ +W + V+L +Y++++ YRF L Q++F RL Y + +P+ ++LG
Sbjct: 24 WRGSVWSAIWIQYSVWLGLYFLVSAIYRFILSAYQQQIFVRLVDYVNSRMSYVPLDWMLG 83
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
F+++ V++R+W Y ++ + D +A + I G
Sbjct: 84 FFIAGVLRRFWYLYDIIGFIDNIACSTATYIRG 116
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 120 ITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 170
+ Y+ + P+ ++LGF+++ V++R+W Y ++ + D +A + I G
Sbjct: 66 VDYVNSRMSYVPLDWMLGFFIAGVLRRFWYLYDIIGFIDNIACSTATYIRG 116
>sp|Q94175|YCEL_CAEEL Uncharacterized protein C43G2.4 OS=Caenorhabditis elegans
GN=C43G2.4 PE=3 SV=2
Length = 399
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFT--YRFALIE-----SHQRLFERLQKYCAKKTEVI 53
W+GS+++ VWREL ++L ++Y I F+ + F + ++++F+ + + T++I
Sbjct: 16 WKGSIWRSVWRELFLFLFLFYFIRFSAPHFFNYTDPTDSKGYRKIFKVMCNEFHEYTKMI 75
Query: 54 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVS 96
P++F+LGFYVS VV RWW Q+ L WP+ + +P S
Sbjct: 76 PLTFLLGFYVSNVVSRWWRQFETLRWPEDFLSILCLLLPSKES 118
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVS 173
P++F+LGFYVS VV RWW Q+ L WP+ + +P S
Sbjct: 76 PLTFLLGFYVSNVVSRWWRQFETLRWPEDFLSILCLLLPSKES 118
>sp|Q21973|BEST1_CAEEL Bestrophin-1 OS=Caenorhabditis elegans GN=R13.3 PE=2 SV=2
Length = 525
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALI--ESHQRLFERLQKYCAKKTEVIPMSFV 58
W+GS++K + +EL ++++ + ++ YR LI E +++++ + + IP++F+
Sbjct: 24 WKGSIWKYLLKELFMFIIAFITVSSVYRSNLIIGEKTRKIWDNFAALFDQNMDFIPLTFM 83
Query: 59 LGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLI 101
LGF+V+++V+RW + + L W + A+ V+ I G +I
Sbjct: 84 LGFFVTIIVRRWNDIFANLGWVENTAITVANYIRGTDDRTRMI 126
Score = 38.1 bits (87), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLI 178
P++F+LGF+V+++V+RW + + L W + A+ V+ I G +I
Sbjct: 79 PLTFMLGFFVTIIVRRWNDIFANLGWVENTAITVANYIRGTDDRTRMI 126
>sp|O18304|YHS5_CAEEL Uncharacterized protein ZK849.5 OS=Caenorhabditis elegans
GN=ZK849.5 PE=3 SV=1
Length = 411
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 2 RGSVYKLVWRELVVYLVIYYIINFTYRFALIESH-QRLFERLQKYCAKKTE-VIPMSFVL 59
+G+++ +++EL ++L +Y++ YR L +S QR ++ + E IP+ F+L
Sbjct: 26 KGNLFTAIFKELCLFLGLYFLFMVIYRLVLPKSGGQREIRKIVENLLSHQEFTIPLEFLL 85
Query: 60 GFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDH 119
GF+VS VV RW + D+LA S A V + FP N K +LI
Sbjct: 86 GFFVSSVVDRWRKSL------DSLAYIESCA-----HAVVIGFPPNSNGSDKNLLIRRTI 134
Query: 120 ITYL 123
I YL
Sbjct: 135 IRYL 138
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 131 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPP 181
P+ F+LGF+VS VV RW + D+LA S A V + FPP
Sbjct: 80 PLEFLLGFFVSSVVDRWRKSL------DSLAYIESCA-----HAVVIGFPP 119
>sp|Q17851|YAVK_CAEEL Uncharacterized protein C09B9.3 OS=Caenorhabditis elegans
GN=C09B9.3 PE=2 SV=2
Length = 884
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
W+GSV+KL+ REL ++LV+YY + YR L E +++F ++ I ++F+L
Sbjct: 24 WKGSVWKLIHRELFMWLVLYYTVLAIYR-TLDEERKKIFRSNIEHFINFEPSI-LTFMLS 81
Query: 61 FYVSLVVKRW 70
F+V+ +V+RW
Sbjct: 82 FFVTTIVQRW 91
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
W+GSV+K +W+EL +++V YY I Y L + + +F++ ++ ++F+L
Sbjct: 353 WKGSVWKSIWKELALWIVTYYTIKAVY-MTLDDDRKIIFDKNFLPKIANFDLSVLTFMLT 411
Query: 61 FYVSLVVKRW 70
F+V+ +V RW
Sbjct: 412 FFVTTIVARW 421
>sp|O45363|YSWJ_CAEEL Uncharacterized protein F14H3.2 OS=Caenorhabditis elegans
GN=F14H3.2 PE=3 SV=1
Length = 434
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 RGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQR-LFERLQKYCAKKTEVIPMSFVLG 60
+GS+YK++ E ++ Y+ + +RFA+ E+ + E +K ++ IPM +L
Sbjct: 26 KGSLYKVILHEFLMTAGAYFGVFLVFRFAINETQREYAAEVFKKLKEQQNVCIPMQMMLA 85
Query: 61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
F+++ V +W + + + + + AL V+ +P
Sbjct: 86 FFIATVADQWEKIFENVGYIENAALAVATFLPD 118
>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1
SV=1
Length = 4306
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 15 VYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIP-MSFVLGFYVSLVVKRWWEQ 73
+YL ++IN+ R IE H + +LQ + +IP + +V G ++S W +
Sbjct: 1156 IYLFEEFLINWHERLRKIEEHSVMTVKLQSEVDRYKMIIPILKYVRGEHLS--PDHWLDL 1213
Query: 74 YRLLPWPDTLAL 85
+RLL P +L
Sbjct: 1214 FRLLGLPRGTSL 1225
>sp|P16393|HMDH_STRPU 3-hydroxy-3-methylglutaryl-coenzyme A reductase
OS=Strongylocentrotus purpuratus GN=HMGCR PE=2 SV=2
Length = 932
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 71 WEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSS 130
WE Y WP TL ++A + V++ ++ F L Y +K V I ++ H + +
Sbjct: 307 WEFYATRLWPPTLDYILTAILATVLASHYIFFSDLATYPEKRVSI-------MEGHEVVN 359
Query: 131 PMS 133
P S
Sbjct: 360 PGS 362
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.331 0.144 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,551,634
Number of Sequences: 539616
Number of extensions: 2623000
Number of successful extensions: 7865
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7804
Number of HSP's gapped (non-prelim): 58
length of query: 188
length of database: 191,569,459
effective HSP length: 111
effective length of query: 77
effective length of database: 131,672,083
effective search space: 10138750391
effective search space used: 10138750391
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.9 bits)