Query psy2163
Match_columns 188
No_of_seqs 217 out of 389
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:56:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3547|consensus 100.0 1.6E-40 3.4E-45 304.2 15.6 127 1-127 24-150 (450)
2 KOG3547|consensus 100.0 2.5E-32 5.4E-37 250.3 4.6 114 59-187 14-151 (450)
3 PF01062 Bestrophin: Bestrophi 99.4 1.9E-12 4E-17 111.5 8.1 107 1-119 22-136 (293)
4 PF01062 Bestrophin: Bestrophi 98.5 5.4E-08 1.2E-12 83.9 2.2 93 62-172 15-114 (293)
5 COG3781 Predicted membrane pro 70.1 5 0.00011 35.7 3.3 66 1-72 16-81 (306)
6 PF02937 COX6C: Cytochrome c o 53.7 60 0.0013 23.2 5.9 42 2-43 10-51 (73)
7 PF05992 SbmA_BacA: SbmA/BacA- 46.3 93 0.002 28.2 7.3 81 52-141 69-152 (315)
8 PRK11098 microcin B17 transpor 38.9 2.4E+02 0.0052 26.4 9.0 74 42-123 141-216 (409)
9 PF07051 OCIA: Ovarian carcino 38.9 1.4E+02 0.0031 23.1 6.3 66 29-100 24-96 (111)
10 PF05603 DUF775: Protein of un 30.8 54 0.0012 27.5 3.1 32 35-75 153-192 (202)
11 PF13124 DUF3963: Protein of u 28.5 1.3E+02 0.0029 18.9 3.8 30 36-71 10-39 (40)
12 PF06836 DUF1240: Protein of u 25.7 2E+02 0.0042 21.5 5.0 45 17-65 18-62 (95)
13 PF14857 TMEM151: TMEM151 fami 25.7 25 0.00054 33.1 0.2 71 2-72 5-89 (425)
14 COG3924 Predicted membrane pro 23.9 22 0.00047 25.8 -0.4 10 173-182 66-75 (80)
15 PRK12369 putative transporter; 22.9 5.6E+02 0.012 23.0 11.9 27 95-121 114-140 (326)
16 PF15049 DUF4534: Protein of u 21.5 2.2E+02 0.0048 23.5 4.9 39 4-42 75-116 (163)
17 PRK09459 pspG phage shock prot 21.3 84 0.0018 22.8 2.2 16 131-146 3-18 (76)
18 PF15110 TMEM141: TMEM141 prot 20.4 1.1E+02 0.0024 23.0 2.8 35 132-168 33-67 (94)
No 1
>KOG3547|consensus
Probab=100.00 E-value=1.6e-40 Score=304.24 Aligned_cols=127 Identities=42% Similarity=0.882 Sum_probs=125.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHhcccCCch
Q psy2163 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWP 80 (188)
Q Consensus 1 WkGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~~IPlsF~LGFFvs~vl~RW~~s~~ki~W~ 80 (188)
|||||||+||+||++|+++|++++++||++|+++||++||+++.||+++.+.||++|||||||++|+.|||+++.++|||
T Consensus 24 WkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~~~~iPLtFmLGFfVt~Vv~RW~~~f~nig~i 103 (450)
T KOG3547|consen 24 WKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSRLDFIPLTFMLGFFVTIVVDRWWKQFRNIGWI 103 (450)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcccccccchHhhhhhHHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2163 81 DTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHY 127 (188)
Q Consensus 81 D~la~~i~~yi~g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~ 127 (188)
|++|+.++++++|.||++|.+||+|+|||+++|+|++|+|+..++++
T Consensus 104 d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkR 150 (450)
T KOG3547|consen 104 DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKR 150 (450)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988776
No 2
>KOG3547|consensus
Probab=99.97 E-value=2.5e-32 Score=250.30 Aligned_cols=114 Identities=32% Similarity=0.545 Sum_probs=104.8
Q ss_pred hhHHHHHHHHHHHHhcccCCchHHHHHHHHHhc------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy2163 59 LGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAI------PGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPM 132 (188)
Q Consensus 59 LGFFvs~vl~RW~~s~~ki~W~D~la~~i~~yi------~g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~~~ipl 132 (188)
.+.|..+ +.||+||+||.+|.|++++++++|+ .++++.|+.+|+++++||+.. .++|||
T Consensus 14 ~~~f~kl-l~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~--------------~~~iPL 78 (450)
T KOG3547|consen 14 SFTFLKL-LLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSR--------------LDFIPL 78 (450)
T ss_pred cHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--------------cccccc
Confidence 4555666 4899999999999999999998765 789999999999999999874 578999
Q ss_pred hHhHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhccCCe------------------eEEEeecChhhhccC
Q psy2163 133 SFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVV------------------SVVFLIFPPLQKSRF 187 (188)
Q Consensus 133 ~f~lgF~v~~v~~Rw~~~~~~i~~~d~~~~~~~~~~~g~~------------------~~vfr~i~~~~r~rf 187 (188)
+||||||||+|++|||+||+||||||++|+.+|+++||++ +|||||||++|||||
T Consensus 79 tFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRF 151 (450)
T KOG3547|consen 79 TFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRF 151 (450)
T ss_pred hHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999964 999999999999999
No 3
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=99.36 E-value=1.9e-12 Score=111.53 Aligned_cols=107 Identities=28% Similarity=0.543 Sum_probs=92.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcC--Ccc--hhhhhhHHHHHHHHHHHHhccc
Q psy2163 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTE--VIP--MSFVLGFYVSLVVKRWWEQYRL 76 (188)
Q Consensus 1 WkGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~--~IP--lsF~LGFFvs~vl~RW~~s~~k 76 (188)
||||++|.||+++++++++++++.++| .++....++...+. .++ ++|+|||+++.+..|||+....
T Consensus 22 ~~gsv~~~i~~~ll~~~~~~~~v~~~~----------~~~~~~~~~~~~~~~~l~g~~l~~lL~Fr~n~ay~Rwwe~r~~ 91 (293)
T PF01062_consen 22 WRGSVLKRIWPPLLVFLALAAAVALLY----------IFEPICWLSLPSSPFSLLGIALSFLLVFRTNTAYDRWWEARKL 91 (293)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH----------hhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999 34445555655554 555 9999999999999999999999
Q ss_pred ----CCchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2163 77 ----LPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDH 119 (188)
Q Consensus 77 ----i~W~D~la~~i~~yi~g~dE~~R~ifr~I~RY~~l~~~l~~r~ 119 (188)
++++++++-.++.++++.+++.+..++.++ |+...... +|.
T Consensus 92 wg~l~~~~r~l~~~~~~~~~~~~~~~~l~r~~ia-~~~~~~~~-lR~ 136 (293)
T PF01062_consen 92 WGNLVNWSRNLARQICAFVPDDDERRRLLRRLIA-FAVALKAH-LRG 136 (293)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-HHHHHHHH-hcC
Confidence 999999999999999999998888888888 98876544 444
No 4
>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.
Probab=98.49 E-value=5.4e-08 Score=83.86 Aligned_cols=93 Identities=26% Similarity=0.425 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhcccCCchHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhHhHHH
Q psy2163 62 YVSLVVKRWWEQYRLLPWPDTLALFVSAAIP-GVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSP--MSFVLGF 138 (188)
Q Consensus 62 Fvs~vl~RW~~s~~ki~W~D~la~~i~~yi~-g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~~~ip--l~f~lgF 138 (188)
+... +.||+|++.+-.|++.+++.+.+..- ... .+.....++..... ..+++ ++|+|||
T Consensus 15 ~~~~-l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~-----~~~~~~~~~~~~~~------------~~l~g~~l~~lL~F 76 (293)
T PF01062_consen 15 WWRL-LFRWRGSVLKRIWPPLLVFLALAAAVALLY-----IFEPICWLSLPSSP------------FSLLGIALSFLLVF 76 (293)
T ss_pred HHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhcccccccccccc------------hhHHHHHHHHHHHH
Confidence 3444 58999999999999988777554321 100 11222222222110 01244 9999999
Q ss_pred HHHHHHHHHHHhhhc----CCchhHHHHHHHhhccCCe
Q psy2163 139 YVSLVVKRWWEQYRL----LPWPDTLALFVSAAIPGVV 172 (188)
Q Consensus 139 ~v~~v~~Rw~~~~~~----i~~~d~~~~~~~~~~~g~~ 172 (188)
+++.+.+|||++.+. ++++++++..+.+++++++
T Consensus 77 r~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~~ 114 (293)
T PF01062_consen 77 RTNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDDD 114 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999 9999999999999999984
No 5
>COG3781 Predicted membrane protein [Function unknown]
Probab=70.10 E-value=5 Score=35.74 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=48.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHH
Q psy2163 1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWE 72 (188)
Q Consensus 1 WkGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~~IPlsF~LGFFvs~vl~RW~~ 72 (188)
||||+--.|.+.++...+.=..+.++++......++-.=.. --.-.|.++..|||=......|||+
T Consensus 16 ~rGSVl~~i~~rll~~~~fS~~v~~~~~w~~~~~i~~~~tp------f~i~giaLai~L~FRnNaaYdR~wE 81 (306)
T COG3781 16 WRGSVLPKILPRLLLCFLFSLVVTAVLPWYTPLSIPFTLTP------FSIPGIALAIFLGFRNNAAYDRYWE 81 (306)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccceeccCc------chhHHHHHHHHHhhccchHHHHHHH
Confidence 89999999999999999888889999987655444310000 0011355888889988899999973
No 6
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=53.73 E-value=60 Score=23.16 Aligned_cols=42 Identities=24% Similarity=0.439 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHH
Q psy2163 2 RGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQ 43 (188)
Q Consensus 2 kGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~ 43 (188)
||-+.|-+.+++.+=+++=.++.+.|.|...+..|+-.++.-
T Consensus 10 rgll~~~l~~~i~~a~~ls~~~~~~~kf~v~~pRKk~YadFY 51 (73)
T PF02937_consen 10 RGLLAKRLKRHIVVAFVLSLGVAAAYKFGVAEPRKKAYADFY 51 (73)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 688999999999999999999999999999888777655543
No 7
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=46.29 E-value=93 Score=28.23 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=53.4
Q ss_pred CcchhhhhhHHHHHHHHHHHHhccc---CCchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2163 52 VIPMSFVLGFYVSLVVKRWWEQYRL---LPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYL 128 (188)
Q Consensus 52 ~IPlsF~LGFFvs~vl~RW~~s~~k---i~W~D~la~~i~~yi~g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~~ 128 (188)
.+-+.-+..||++.-++|||...++ --|+. +++.+-.++++-|..+|++....-|..+.+...-.=..
T Consensus 69 ~v~~~v~~~ff~shyiFrWR~Am~~yY~~~W~~---------~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtlia 139 (315)
T PF05992_consen 69 YVVLAVLNSFFVSHYIFRWRTAMNEYYMSHWPK---------LRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIA 139 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---------hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667889999999999976543 22222 13333346689999999998776666655544433345
Q ss_pred CcchhHhHHHHHH
Q psy2163 129 SSPMSFVLGFYVS 141 (188)
Q Consensus 129 ~ipl~f~lgF~v~ 141 (188)
.+|+-+-|+=-|+
T Consensus 140 FlPiL~~lS~~V~ 152 (315)
T PF05992_consen 140 FLPILWELSSHVS 152 (315)
T ss_pred HHHHHHHHhccCC
Confidence 6788877776665
No 8
>PRK11098 microcin B17 transporter; Reviewed
Probab=38.93 E-value=2.4e+02 Score=26.37 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCcchhhhhhHHHHHHHHHHHHhcccCCchHHHHHHHHHhc--CCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2163 42 LQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAI--PGVVSVVFLIFPLLQNYEKKTVLIGLDH 119 (188)
Q Consensus 42 ~~~~~~~~~~~IPlsF~LGFFvs~vl~RW~~s~~ki~W~D~la~~i~~yi--~g~dE~~R~ifr~I~RY~~l~~~l~~r~ 119 (188)
+..++--..-.+|+.-+--|+.+....|||+-.++ .++.-+. +..|.-.++|=|.+.+++....-+....
T Consensus 141 l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~--------~yl~~Wl~~r~ienPDQRIqEDi~~F~~~tl~L~~~l 212 (409)
T PRK11098 141 VGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNE--------YYMAHWQKLRHIEGAAQRVQEDTMRFASTLENLGVSF 212 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHH
Confidence 33343333345666666777777888889877665 2222111 2222234568999999999876666655
Q ss_pred HHHH
Q psy2163 120 ITYL 123 (188)
Q Consensus 120 I~~~ 123 (188)
+..+
T Consensus 213 i~si 216 (409)
T PRK11098 213 INAI 216 (409)
T ss_pred HHHH
Confidence 5433
No 9
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=38.88 E-value=1.4e+02 Score=23.10 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=42.7
Q ss_pred HhcChhhHHHHHHHHHHHHh---hcCCcchhhhhhHHHHHHHHHHHHhcccCC----chHHHHHHHHHhcCCCCchhHH
Q psy2163 29 FALIESHQRLFERLQKYCAK---KTEVIPMSFVLGFYVSLVVKRWWEQYRLLP----WPDTLALFVSAAIPGVVSVVFL 100 (188)
Q Consensus 29 ~~l~~~~~~~Fe~~~~~~~~---~~~~IPlsF~LGFFvs~vl~RW~~s~~ki~----W~D~la~~i~~yi~g~dE~~R~ 100 (188)
+.++||.++++++ |++ +-..+|++-..+.-+...+.+ |.+...+ +|-.+..-+..|+-|.-.-++.
T Consensus 24 ~~~T~EE~kvlrE----C~~ESFwyRslPls~~s~~~t~~lv~~--G~l~~~~rfG~~PKv~~ag~~Gy~~GK~SY~~~ 96 (111)
T PF07051_consen 24 YQLTEEERKVLRE----CNEESFWYRSLPLSAGSMLVTQGLVKK--GYLKSSPRFGSLPKVAFAGILGYFVGKISYQGT 96 (111)
T ss_pred ccCCHHHHHHHHH----HHHhhhHhccCcHHHHHHHHHHHHHHc--CcccCCCccccccHHHHHHHHHHhhhHHHHHHH
Confidence 4578888887765 664 357899998877777665554 6555554 6665555566777765433333
No 10
>PF05603 DUF775: Protein of unknown function (DUF775); InterPro: IPR008493 This family consists of several eukaryotic proteins of unknown function.
Probab=30.75 E-value=54 Score=27.54 Aligned_cols=32 Identities=28% Similarity=0.762 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHhhcCC--------cchhhhhhHHHHHHHHHHHHhcc
Q psy2163 35 HQRLFERLQKYCAKKTEV--------IPMSFVLGFYVSLVVKRWWEQYR 75 (188)
Q Consensus 35 ~~~~Fe~~~~~~~~~~~~--------IPlsF~LGFFvs~vl~RW~~s~~ 75 (188)
.+|+-|++..|+..+... ||+.. +.|||+.|.
T Consensus 153 A~ki~~NlfNyl~SF~~~~~~~~~~~VP~~~---------~~~W~~kFe 192 (202)
T PF05603_consen 153 AQKIAENLFNYLSSFSGSQPQGGEEVVPLSV---------FDKWWEKFE 192 (202)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCceEEeHHH---------HHHHHHHHH
Confidence 366777788888877665 78765 799999875
No 11
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=28.49 E-value=1.3e+02 Score=18.93 Aligned_cols=30 Identities=27% Similarity=0.699 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHH
Q psy2163 36 QRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWW 71 (188)
Q Consensus 36 ~~~Fe~~~~~~~~~~~~IPlsF~LGFFvs~vl~RW~ 71 (188)
++.|+++.++..+ ++|.+..+|-.++.=|-
T Consensus 10 eryfddiqkwirn------it~cfal~vv~lvslwi 39 (40)
T PF13124_consen 10 ERYFDDIQKWIRN------ITFCFALLVVVLVSLWI 39 (40)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHc
Confidence 4567777777765 78888888877777663
No 12
>PF06836 DUF1240: Protein of unknown function (DUF1240); InterPro: IPR010665 This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.
Probab=25.75 E-value=2e+02 Score=21.55 Aligned_cols=45 Identities=24% Similarity=0.492 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcCCcchhhhhhHHHHH
Q psy2163 17 LVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSL 65 (188)
Q Consensus 17 ~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~~IPlsF~LGFFvs~ 65 (188)
+++|+.+..++.+.-+++.| .=.++..|+.- ...+++++||+.+.
T Consensus 18 ll~Y~~~~~~~~~i~~~~~k-~n~~i~~~l~~---i~I~~~IlS~~~Sf 62 (95)
T PF06836_consen 18 LLFYFSYLSFFSFIKNKPPK-FNNKIVKYLAI---IAIISFILSFFFSF 62 (95)
T ss_pred HHHHHHHHHHHHhhcCCCch-hHHHHHHHHHH---HHHHHHHHHhHhhe
Confidence 45566666665554444444 33556666552 23467777777665
No 13
>PF14857 TMEM151: TMEM151 family
Probab=25.71 E-value=25 Score=33.08 Aligned_cols=71 Identities=21% Similarity=0.435 Sum_probs=45.4
Q ss_pred cchHHHHH-----HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH---------HHHHHhhcCCcchhhhhhHHHHHHH
Q psy2163 2 RGSVYKLV-----WRELVVYLVIYYIINFTYRFALIESHQRLFERL---------QKYCAKKTEVIPMSFVLGFYVSLVV 67 (188)
Q Consensus 2 kGSi~K~i-----w~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~---------~~~~~~~~~~IPlsF~LGFFvs~vl 67 (188)
|.|+.+++ ||=|+.=+++|.++.++--..+....|..|+.- -.-|++--.+||+.|++.-|+-.++
T Consensus 5 ~qsl~~~l~res~wkCl~lsll~~~C~~~v~wC~~~~v~~~~~~~~~~~~~~~y~~spc~~GyiyIplaf~~mlYviYlv 84 (425)
T PF14857_consen 5 KQSLCGSLCRESHWKCLLLSLLMYGCLGAVAWCQLTYVTKLSFDSAYKGRSMTYHDSPCSDGYIYIPLAFLIMLYVIYLV 84 (425)
T ss_pred cccHHHHhhhccccHHHHHHHHHHHHHHHheeeEeeEEEeecccccccCCcceecCCCcccchhhHHHHHHHHHHHHHHH
Confidence 34555543 555666677777777766555544323222210 1237777779999999999999998
Q ss_pred HHHHH
Q psy2163 68 KRWWE 72 (188)
Q Consensus 68 ~RW~~ 72 (188)
..|-.
T Consensus 85 ECwhs 89 (425)
T PF14857_consen 85 ECWHS 89 (425)
T ss_pred HHhcc
Confidence 88854
No 14
>COG3924 Predicted membrane protein [Function unknown]
Probab=23.86 E-value=22 Score=25.79 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=7.8
Q ss_pred eEEEeecChh
Q psy2163 173 SVVFLIFPPL 182 (188)
Q Consensus 173 ~~vfr~i~~~ 182 (188)
-++|||||..
T Consensus 66 kfif~DI~LE 75 (80)
T COG3924 66 KFIFRDIPLE 75 (80)
T ss_pred HHhhcCCCcc
Confidence 5689999865
No 15
>PRK12369 putative transporter; Reviewed
Probab=22.89 E-value=5.6e+02 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.050 Sum_probs=18.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2163 95 VSVVFLIFPLLQNYEKKTVLIGLDHIT 121 (188)
Q Consensus 95 dE~~R~ifr~I~RY~~l~~~l~~r~I~ 121 (188)
|...++|=|.+.++++...-+.+..+.
T Consensus 114 DNPDQRI~EDi~~f~~~tl~l~~~~i~ 140 (326)
T PRK12369 114 EGSSQRIQEDTYRFAKIMESLGLSFLR 140 (326)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333457899999999987655555443
No 16
>PF15049 DUF4534: Protein of unknown function (DUF4534)
Probab=21.52 E-value=2.2e+02 Score=23.52 Aligned_cols=39 Identities=26% Similarity=0.615 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy2163 4 SVYKLVWRELVV---YLVIYYIINFTYRFALIESHQRLFERL 42 (188)
Q Consensus 4 Si~K~iw~el~i---~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~ 42 (188)
|+||-+++-|++ |.+.|=+++..=....|+.-++-|+++
T Consensus 75 sv~~~~Y~GlliY~iWIi~YE~~n~~i~lLtn~~i~~~f~ev 116 (163)
T PF15049_consen 75 SVYANIYRGLLIYAIWIIFYELINFSIQLLTNGTIKEQFKEV 116 (163)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchhHH
Confidence 789999998864 667888888887766666555556653
No 17
>PRK09459 pspG phage shock protein G; Reviewed
Probab=21.29 E-value=84 Score=22.81 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=12.9
Q ss_pred chhHhHHHHHHHHHHH
Q psy2163 131 PMSFVLGFYVSLVVKR 146 (188)
Q Consensus 131 pl~f~lgF~v~~v~~R 146 (188)
-+-|++||+++..++-
T Consensus 3 EllFvl~F~~~LlvTG 18 (76)
T PRK09459 3 ELLFVIGFFVMLLVTG 18 (76)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4679999999988763
No 18
>PF15110 TMEM141: TMEM141 protein family; PDB: 2LOR_A.
Probab=20.43 E-value=1.1e+02 Score=23.02 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=26.6
Q ss_pred hhHhHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhc
Q psy2163 132 MSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAI 168 (188)
Q Consensus 132 l~f~lgF~v~~v~~Rw~~~~~~i~~~d~~~~~~~~~~ 168 (188)
.+|++||=.+..+|.-- ...+|+|-+-.++||+-+
T Consensus 33 ~tFv~G~~~~f~~Q~~i--qrrlpYp~q~~~LVS~v~ 67 (94)
T PF15110_consen 33 FTFVLGTGATFFLQKAI--QRRLPYPFQWNILVSVVV 67 (94)
T ss_dssp HHHHGGGGHHHHHHHHH--HTTSSSSS-HHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH--HHhCCCCCCchhHHHHHH
Confidence 68999988888887654 356799999998888654
Done!