Query psy2163
Match_columns 188
No_of_seqs 217 out of 389
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 17:57:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_I STA, cytochrome C oxida 27.0 1.5E+02 0.0052 20.2 5.9 40 2-41 10-49 (73)
2 1tm9_A GI3844938, hypothetical 23.2 87 0.003 23.3 3.8 34 14-51 96-135 (137)
3 2kzs_A Death-associated protei 14.2 1.2E+02 0.0043 21.7 2.8 22 33-54 11-32 (94)
4 3lcn_C MRNA transport factor G 11.3 1E+02 0.0035 17.4 1.2 9 33-41 16-24 (29)
5 3arc_M Photosystem II reaction 11.0 1.1E+02 0.0037 18.3 1.4 15 129-143 16-30 (36)
6 2ls4_A High affinity copper up 13.8 59 0.002 18.0 0.0 23 51-73 3-25 (26)
7 4atg_A TAF6; transcription, TF 10.1 1.4E+02 0.0049 23.8 2.3 47 28-74 2-57 (196)
8 3fyb_A Protein of unknown func 8.7 2.4E+02 0.0083 20.5 2.8 35 37-71 16-51 (104)
9 1zs4_A Regulatory protein CII; 8.6 4.2E+02 0.014 18.3 4.0 49 54-108 29-78 (83)
10 3r15_A Factor H binding protei 8.0 2.9E+02 0.0098 19.8 2.9 27 29-55 16-42 (93)
No 1
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=27.05 E-value=1.5e+02 Score=20.18 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHH
Q psy2163 2 RGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFER 41 (188)
Q Consensus 2 kGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~ 41 (188)
||-+=|-+.+++.+=+++=.+..+.|.++.++..|+-.++
T Consensus 10 rgLl~~~lr~~i~~a~~lsl~~~~~~k~~v~~pRK~aYad 49 (73)
T 1v54_I 10 RGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYAD 49 (73)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6778889999999999999999999999999887765544
No 2
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=23.20 E-value=87 Score=23.26 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhc-Ch---h--hHHHHHHHHHHHHhhcC
Q psy2163 14 VVYLVIYYIINFTYRFAL-IE---S--HQRLFERLQKYCAKKTE 51 (188)
Q Consensus 14 ~i~~~~Y~~i~~~Yr~~l-~~---~--~~~~Fe~~~~~~~~~~~ 51 (188)
++|++.| .+|.|.. .+ . -|+.||.++.-...|.+
T Consensus 96 iifci~y----flyhf~fl~d~nkkq~~k~a~e~ia~~iadyln 135 (137)
T 1tm9_A 96 IIFCVIY----FLYHFGFLKDNNKKQIIKKAYETIADNIADYLN 135 (137)
T ss_dssp HHHHHHH----HHHHTTCSCCCCCSSCHHHHHHHHHHHTHHHHT
T ss_pred ehhhHHH----HHHHhcccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 5799864 22 2 37889988776655543
No 3
>2kzs_A Death-associated protein 6; helical bundle,DHB domain, FAS death-domain associated prote rassf1C interacting domain, apoptosis; NMR {Homo sapiens} PDB: 2kzu_A
Probab=14.15 E-value=1.2e+02 Score=21.66 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHhhcCCcc
Q psy2163 33 ESHQRLFERLQKYCAKKTEVIP 54 (188)
Q Consensus 33 ~~~~~~Fe~~~~~~~~~~~~IP 54 (188)
-+..++||+++.+|...+..=|
T Consensus 11 ~enekLfeEFv~~C~~~t~d~P 32 (94)
T 2kzs_A 11 LENEKLFEEFLELCKMQTADHP 32 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCT
T ss_pred hhhHHHHHHHHHHHHhcccCCc
Confidence 3556789999999998877666
No 4
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=11.28 E-value=1e+02 Score=17.45 Aligned_cols=9 Identities=11% Similarity=0.597 Sum_probs=7.3
Q ss_pred hhhHHHHHH
Q psy2163 33 ESHQRLFER 41 (188)
Q Consensus 33 ~~~~~~Fe~ 41 (188)
|+||++||+
T Consensus 16 EEQr~i~~~ 24 (29)
T 3lcn_C 16 EEQREILQK 24 (29)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688988875
No 5
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=10.96 E-value=1.1e+02 Score=18.30 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.2
Q ss_pred CcchhHhHHHHHHHH
Q psy2163 129 SSPMSFVLGFYVSLV 143 (188)
Q Consensus 129 ~ipl~f~lgF~v~~v 143 (188)
.||-.|.+.-||.+.
T Consensus 16 ~iPt~FLlilYvqT~ 30 (36)
T 3arc_M 16 LVPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhheec
Confidence 389999999999875
No 6
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.81 E-value=59 Score=18.01 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=16.7
Q ss_pred CCcchhhhhhHHHHHHHHHHHHh
Q psy2163 51 EVIPMSFVLGFYVSLVVKRWWEQ 73 (188)
Q Consensus 51 ~~IPlsF~LGFFvs~vl~RW~~s 73 (188)
..+-++.++|-++...++.|..+
T Consensus 3 g~l~iavvlGa~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYFLFSWKKX 25 (26)
Confidence 34557778888888888888754
No 7
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=10.08 E-value=1.4e+02 Score=23.80 Aligned_cols=47 Identities=6% Similarity=0.181 Sum_probs=31.1
Q ss_pred HHhcChhhHHHHHHHHHHHHh---------hcCCcchhhhhhHHHHHHHHHHHHhc
Q psy2163 28 RFALIESHQRLFERLQKYCAK---------KTEVIPMSFVLGFYVSLVVKRWWEQY 74 (188)
Q Consensus 28 r~~l~~~~~~~Fe~~~~~~~~---------~~~~IPlsF~LGFFvs~vl~RW~~s~ 74 (188)
++.|++|+|..|+++..=|.. -.+.--+.-++-+|+..+...=....
T Consensus 2 kh~LS~Elq~yf~~It~a~~~~~r~~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl 57 (196)
T 4atg_A 2 SHMLPKELQLYFDKILSMIKSDMKDIAIECLEKESGLQQLVPYFIQHISELILKSF 57 (196)
T ss_dssp GGGSCHHHHHHHHHHHHHHTSTTHHHHHHHHHHCSSCTTTHHHHHHHHHHHHHHCT
T ss_pred CcccCHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHhcc
Confidence 357999999999999888752 11122356667777777665544433
No 8
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=8.73 E-value=2.4e+02 Score=20.51 Aligned_cols=35 Identities=11% Similarity=0.316 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhhcCCcchhhh-hhHHHHHHHHHHH
Q psy2163 37 RLFERLQKYCAKKTEVIPMSFV-LGFYVSLVVKRWW 71 (188)
Q Consensus 37 ~~Fe~~~~~~~~~~~~IPlsF~-LGFFvs~vl~RW~ 71 (188)
..|.+++.|++..++.=++..| |+=|....+.+|-
T Consensus 16 AaFRrL~~HL~~r~DVQNIDLMnLAGFCRNCLskWy 51 (104)
T 3fyb_A 16 AAFRHLLRHLDEHKDVQNIDLMIQADFCRNCLAKWL 51 (104)
T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHHH
Confidence 3599999999998885444333 4446777889994
No 9
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=8.64 E-value=4.2e+02 Score=18.29 Aligned_cols=49 Identities=14% Similarity=0.233 Sum_probs=28.3
Q ss_pred chhhhhhHHHHHHHHHHHHhcccCCchHHHHHHHHHhcCCC-CchhHHHHHHHHHH
Q psy2163 54 PMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV-VSVVFLIFPLLQNY 108 (188)
Q Consensus 54 PlsF~LGFFvs~vl~RW~~s~~ki~W~D~la~~i~~yi~g~-dE~~R~ifr~I~RY 108 (188)
++.=.+|.==|++ .||++. |.+.++.+.+..-.+. +++-+..-+..+.|
T Consensus 29 ~vAe~~GvdeStI-SR~k~~-----~~~~~~~lLa~Lglkvv~~e~~~~~k~~~~~ 78 (83)
T 1zs4_A 29 KTAEAVGVDKSQI-SRWKRD-----WIPKFSMLLAVLEWGVVDDDMARLARQVAAI 78 (83)
T ss_dssp HHHHHHTSCHHHH-HHHHHH-----THHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHH-hhhhhh-----HHHHHHHHHHHhccCCCcHHHHHHHHHHHHH
Confidence 3444566666775 999994 6777766666653332 34444444444443
No 10
>3r15_A Factor H binding protein; protein binding; 1.70A {Treponema denticola} PDB: 3qz0_A
Probab=8.05 E-value=2.9e+02 Score=19.75 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=19.8
Q ss_pred HhcChhhHHHHHHHHHHHHhhcCCcch
Q psy2163 29 FALIESHQRLFERLQKYCAKKTEVIPM 55 (188)
Q Consensus 29 ~~l~~~~~~~Fe~~~~~~~~~~~~IPl 55 (188)
|.+|.+|+..+|+...=+.+..+.-|+
T Consensus 16 ~~Mn~~Qk~~Yd~FI~~Le~~ak~~~~ 42 (93)
T 3r15_A 16 FKMNTAQKAHYEKFINALENELKTRHI 42 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTTTCCB
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567889999999977766666554454
Done!