Query psy2163
Match_columns 188
No_of_seqs 217 out of 389
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 17:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2163.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2163hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54i_ f.23.3.1 (I:) Mitochon 43.6 33 0.0024 22.0 5.9 41 2-42 10-50 (73)
2 d1tm9a_ a.225.1.1 (A:) Hypothe 23.2 41 0.003 23.3 3.8 34 14-51 96-135 (137)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 21.6 42 0.0031 21.8 3.4 35 37-71 14-49 (79)
4 d2dkla1 a.5.2.1 (A:8-79) Trinu 19.4 26 0.0019 22.5 1.9 21 141-161 11-31 (72)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 17.0 42 0.0031 20.6 2.6 20 30-49 2-21 (71)
6 d1sqwa2 d.17.6.3 (A:1-94) Nip7 13.1 35 0.0025 22.9 1.3 19 31-49 4-23 (94)
7 d1kqfb2 f.23.22.1 (B:246-290) 12.2 1.1E+02 0.0082 17.5 3.3 27 4-30 6-32 (45)
8 d1ivha2 e.6.1.1 (A:6-241) Isov 11.9 59 0.0043 23.5 2.5 22 91-112 5-26 (236)
9 d1xdpa3 d.136.1.4 (A:315-501) 11.1 68 0.0049 23.9 2.6 24 161-188 70-93 (187)
10 d2o4ta1 a.69.4.1 (A:16-105) Un 10.6 94 0.0069 20.1 2.9 21 30-50 7-27 (90)
No 1
>d1v54i_ f.23.3.1 (I:) Mitochondrial cytochrome c oxidase subunit VIc {Cow (Bos taurus) [TaxId: 9913]}
Probab=43.64 E-value=33 Score=22.02 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=35.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Q psy2163 2 RGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERL 42 (188)
Q Consensus 2 kGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~ 42 (188)
||=+=|-++.++++=+++=.++.+.|.|+..|.-|+.++++
T Consensus 10 rGLl~~~lk~hl~~a~~lsl~~a~~~Kf~v~eprKkaYadF 50 (73)
T d1v54i_ 10 RGLLARRLRFHIVGAFMVSLGFATFYKFAVAEKRKKAYADF 50 (73)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHH
Confidence 56667889999999999999999999999999888766543
No 2
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=23.20 E-value=41 Score=23.26 Aligned_cols=34 Identities=24% Similarity=0.585 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhc-Ch---h--hHHHHHHHHHHHHhhcC
Q psy2163 14 VVYLVIYYIINFTYRFAL-IE---S--HQRLFERLQKYCAKKTE 51 (188)
Q Consensus 14 ~i~~~~Y~~i~~~Yr~~l-~~---~--~~~~Fe~~~~~~~~~~~ 51 (188)
++|++.| .+|.|.. .+ . -|+.||.++.-...|.+
T Consensus 96 iifci~y----flyhf~fl~d~nkkq~~k~a~e~ia~~iadyln 135 (137)
T d1tm9a_ 96 IIFCVIY----FLYHFGFLKDNNKKQIIKKAYETIADNIADYLN 135 (137)
T ss_dssp HHHHHHH----HHHHTTCSCCCCCSSCHHHHHHHHHHHTHHHHT
T ss_pred ehhhHHH----HHHHhcccccccHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 5799864 22 2 37889988776655543
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=21.65 E-value=42 Score=21.79 Aligned_cols=35 Identities=17% Similarity=0.473 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhcCCcchhhh-hhHHHHHHHHHHH
Q psy2163 37 RLFERLQKYCAKKTEVIPMSFV-LGFYVSLVVKRWW 71 (188)
Q Consensus 37 ~~Fe~~~~~~~~~~~~IPlsF~-LGFFvs~vl~RW~ 71 (188)
..|.+++.|+++.++.=++..| |+=|....+.||-
T Consensus 14 aaFrrL~~HL~~r~dVQNIDLMnLaGFCRNCLskWy 49 (79)
T d2o35a1 14 AVFRRLLEHLRERSDVQNIDLMNLAGFCRNCLSNWY 49 (79)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH
Confidence 4699999999999885444433 5556777889995
No 4
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.37 E-value=26 Score=22.48 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhcCCchhHHH
Q psy2163 141 SLVVKRWWEQYRLLPWPDTLA 161 (188)
Q Consensus 141 ~~v~~Rw~~~~~~i~~~d~~~ 161 (188)
+.+++|--+||++|++|-..+
T Consensus 11 ~WiMnp~~KQfsnMGf~re~~ 31 (72)
T d2dkla1 11 AWIMSRLIKQLTDMGFPREPA 31 (72)
T ss_dssp HHHHHHHHHHHHHHTCCHHHH
T ss_pred hhhhhHHHHHHhhcCCcCCCh
Confidence 457899999999999996654
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=16.96 E-value=42 Score=20.57 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=17.7
Q ss_pred hcChhhHHHHHHHHHHHHhh
Q psy2163 30 ALIESHQRLFERLQKYCAKK 49 (188)
Q Consensus 30 ~l~~~~~~~Fe~~~~~~~~~ 49 (188)
.|++.|+++++-|..|..+.
T Consensus 2 ~LT~rQ~~vL~~I~~~~~~~ 21 (71)
T d1jhfa1 2 ALTARQQEVFDLIRDHISQT 21 (71)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 48999999999999998875
No 6
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.05 E-value=35 Score=22.92 Aligned_cols=19 Identities=32% Similarity=0.658 Sum_probs=15.0
Q ss_pred cC-hhhHHHHHHHHHHHHhh
Q psy2163 31 LI-ESHQRLFERLQKYCAKK 49 (188)
Q Consensus 31 l~-~~~~~~Fe~~~~~~~~~ 49 (188)
|+ ||.|..||+++.|+.+.
T Consensus 4 LteeEtk~vfeKLa~yiG~N 23 (94)
T d1sqwa2 4 LTEEETRVMFEKIAKYIGEN 23 (94)
T ss_dssp CCHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 44 46788999999999654
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=12.22 E-value=1.1e+02 Score=17.54 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2163 4 SVYKLVWRELVVYLVIYYIINFTYRFA 30 (188)
Q Consensus 4 Si~K~iw~el~i~~~~Y~~i~~~Yr~~ 30 (188)
++||=++|-+..--..-..+..++.|+
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 479999999998888888888888874
No 8
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.90 E-value=59 Score=23.50 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=18.9
Q ss_pred cCCCCchhHHHHHHHHHHHHHH
Q psy2163 91 IPGVVSVVFLIFPLLQNYEKKT 112 (188)
Q Consensus 91 i~g~dE~~R~ifr~I~RY~~l~ 112 (188)
+.|++|+|+.+++++.+++...
T Consensus 5 ~~~Lseeq~~l~d~~~~f~~~~ 26 (236)
T d1ivha2 5 INGLSEEQRQLRQTMAKFLQEH 26 (236)
T ss_dssp GGTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHh
Confidence 4589999999999999988864
No 9
>d1xdpa3 d.136.1.4 (A:315-501) Polyphosphate kinase, PPK {Escherichia coli [TaxId: 562]}
Probab=11.10 E-value=68 Score=23.94 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHhhccCCeeEEEeecChhhhccCC
Q psy2163 161 ALFVSAAIPGVVSVVFLIFPPLQKSRFD 188 (188)
Q Consensus 161 ~~~~~~~~~g~~~~vfr~i~~~~r~rf~ 188 (188)
..++.|.=.|++|.|+ ..+|.|||
T Consensus 70 ~aLi~Aa~nGK~Vtv~----vELkARFD 93 (187)
T d1xdpa3 70 DSMIHAAHNGKKVTVV----VELQARFD 93 (187)
T ss_dssp HHHHHHHHTTCEEEEE----ECTTCSST
T ss_pred HHHHHHHHcCCEEEEE----Eechhccc
Confidence 4556666789987776 57899998
No 10
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=10.56 E-value=94 Score=20.11 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=17.6
Q ss_pred hcChhhHHHHHHHHHHHHhhc
Q psy2163 30 ALIESHQRLFERLQKYCAKKT 50 (188)
Q Consensus 30 ~l~~~~~~~Fe~~~~~~~~~~ 50 (188)
.|+++.|..++++..|.-..+
T Consensus 7 ~Lp~dy~~~y~~i~~YL~~~~ 27 (90)
T d2o4ta1 7 KLPKDYQIVYKEIQKYLFKVG 27 (90)
T ss_dssp GSCHHHHHHHHHHHHHHHHHS
T ss_pred hCCHHHHHHHHHHHHHHHHcC
Confidence 588899999999999986654
Done!