RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2163
         (188 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.038
 Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 36/125 (28%)

Query: 71  WEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLI--GLDHITYLQ---- 124
           ++ Y +L     +   +  +          +  L++       +   GL+ + +L+    
Sbjct: 177 YQTYHVL-----VGDLIKFSAE-------TLSELIRTTLDAEKVFTQGLNILEWLENPSN 224

Query: 125 ---AHYL-SSPMSFVLGFYVSLVVKRWWEQY----RLLPW-PDTLALFVSAAI---PGVV 172
                YL S P+S  L   + L        Y    +LL + P  L  ++  A     G+V
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLA------HYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278

Query: 173 SVVFL 177
           + V +
Sbjct: 279 TAVAI 283


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 31.7 bits (71), Expect = 0.13
 Identities = 19/157 (12%), Positives = 48/157 (30%), Gaps = 28/157 (17%)

Query: 18  VIYYIINFTYRFALIESHQRLFER------LQKYCAKKTEVIPMSFVLG--FYVSLV--- 66
           V  ++   T     ++ H            L KY   + + +P   +      +S++   
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 67  ----VKRW--WEQYRLLPWPDTLALFVSAAIPGVVSVVFL---IFPLLQNYEKKTVLIGL 117
               +  W  W+          +   ++   P     +F    +FP        +  I  
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-------PSAHIPT 389

Query: 118 DHITYL-QAHYLSSPMSFVLGFYVSLVVKRWWEQYRL 153
             ++ +      S  M  V   +   +V++  ++  +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426


>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology,
          protein structure initiati northeast structural
          genomics consortium; 1.79A {Legionella pneumophila
          subsp}
          Length = 265

 Score = 27.2 bits (61), Expect = 3.1
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 20 YYIINFTYRFALIESHQRLFERLQKYCAKK 49
            I +F Y+F  +   + L E +     + 
Sbjct: 15 IIIASF-YKFIPLNDFRSLREPILTKMHEI 43


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.144    0.473 

Gapped
Lambda     K      H
   0.267   0.0770    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,036,690
Number of extensions: 171564
Number of successful extensions: 358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 6
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 54 (24.5 bits)