RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2163
         (188 letters)



>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide
           dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH)
           subunit {Moorella thermoacetica [TaxId: 1525]}
          Length = 673

 Score = 25.6 bits (56), Expect = 4.5
 Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 32  IESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAI 91
           IE+ +   ER +         I    V G+ +  + K    Q    P        +   +
Sbjct: 404 IEAFK---ERKESNRPVYIPQIKNRVVAGWSLEALTKLLATQNAQNPIRVLNQAILDGEL 460

Query: 92  PGVVSVV 98
            GV  + 
Sbjct: 461 AGVALIC 467


>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP
           {Bacillus subtilis [TaxId: 1423]}
          Length = 162

 Score = 24.1 bits (51), Expect = 9.1
 Identities = 9/64 (14%), Positives = 16/64 (25%)

Query: 52  VIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKK 111
                  +     L          L+P P  L+L  +     +  V   +         K
Sbjct: 88  ATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALK 147

Query: 112 TVLI 115
            +L 
Sbjct: 148 DILQ 151


>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 439

 Score = 24.5 bits (53), Expect = 9.7
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)

Query: 89  AAIPGVVSVVFLIFPLLQNYEKKTVLIGLDH-------ITYLQAHYLSSPMSFVLG 137
           +  PGV    F+IFP       KT      H       +  ++ HY +    F+ G
Sbjct: 304 SVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPG 359


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.473 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 758,879
Number of extensions: 34509
Number of successful extensions: 91
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 13
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.5 bits)