BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2164
(68 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1
Length = 509
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 9 KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
KYW+P W +N+ +ARRE I + ++ +L E++ R + G L YD +++PLVYTQ
Sbjct: 180 KYWVPCVWFSNLAAQARREGRIRDNSALKLLLEELNVFRGKCGMLFHYDWISVPLVYTQ 238
>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1
Length = 668
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
K P KYW+P W N+ +AR E I +Q+++ EM+ R L GYD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234
Query: 64 VYTQ 67
VYTQ
Sbjct: 235 VYTQ 238
>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1
Length = 669
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 36/64 (56%)
Query: 4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
K P KYW+P W N+ +AR E I +Q+++ EM+ R L GYD V +PL
Sbjct: 175 KSPHLKYWVPFIWFGNLATKARNEGRIRDSVDLQSLMTEMNRYRSWCSLLFGYDWVGIPL 234
Query: 64 VYTQ 67
VYTQ
Sbjct: 235 VYTQ 238
>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1
Length = 508
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 9 KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
KYW+P W +++ +ARRE I + ++ +L E++ R + G L YD +++PLVYTQ
Sbjct: 180 KYWVPCVWFSSLAAQARREGRIRDNSALKLLLEELNVFRSKCGMLFHYDWISIPLVYTQ 238
>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1
Length = 473
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
K KYW+P W TN+ +ARR+ I D + +L E++ R + L YD +++PL
Sbjct: 175 KSDFNKYWVPCVWFTNLAAQARRDGRIRDDIALCLLLEELNKYRAKCSMLFHYDWISIPL 234
Query: 64 VYTQ 67
VYTQ
Sbjct: 235 VYTQ 238
>sp|Q8WMR7|BEST1_PIG Bestrophin-1 (Fragment) OS=Sus scrofa GN=BEST1 PE=1 SV=1
Length = 428
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
P +W+P W N+ +A I ++Q++L+EM+ +R + G L YD +++PLVY
Sbjct: 24 PHNSFWMPWVWFANLSTKAWIGGRIRDPVLLQSLLDEMNTLRTQCGHLYAYDWISVPLVY 83
Query: 66 TQ 67
TQ
Sbjct: 84 TQ 85
>sp|Q23369|YHDI_CAEEL Uncharacterized protein ZC518.1 OS=Caenorhabditis elegans
GN=ZC518.1 PE=2 SV=1
Length = 499
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
K P ++YW + W+ N++ +++ + S +++ I++E+ R L SL+ YD V +PL
Sbjct: 176 KDPYSRYWTSIQWSLNLVYECQKKGKVDSYYLMNKIVDEIGKFRHGLASLLKYDWVPVPL 235
Query: 64 VYTQ 67
VY Q
Sbjct: 236 VYPQ 239
>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1
Length = 585
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
P +W+P W N+ +A I ++Q++LNEM+ +R + G L YD +++PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236
Query: 66 TQ 67
TQ
Sbjct: 237 TQ 238
>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1
Length = 585
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
P +W+P W N+ +A I ++Q++LNEM+ +R + G L YD +++PLVY
Sbjct: 177 PHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLRTQCGHLYAYDWISIPLVY 236
Query: 66 TQ 67
TQ
Sbjct: 237 TQ 238
>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3
Length = 551
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 6 PMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
P +W+P W N+ +A I ++Q+++NE+ +R + G L YD +++PLVY
Sbjct: 177 PHNTFWVPWVWFANLSMKAYLGGRIRDTVLLQSLMNEVCTLRTQCGQLYAYDWISIPLVY 236
Query: 66 TQ 67
TQ
Sbjct: 237 TQ 238
>sp|P34319|YKT8_CAEEL Uncharacterized protein C07A9.8 OS=Caenorhabditis elegans
GN=C07A9.8 PE=3 SV=2
Length = 453
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 9 KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
KYW+ WA ++N A+ E +I D+ I E+S R L ++ YD V +PL+Y Q
Sbjct: 223 KYWVSFNWALELLNVAKTEKSIDGDNARNAIAQEISKFRSALTTVSMYDWVPIPLMYPQ 281
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans
GN=ZK688.2 PE=3 SV=1
Length = 632
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%)
Query: 4 KHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
++ +KYW+P WA ++ AR++ I SD+ + +E+ R L + YD V +P+
Sbjct: 175 QYKYSKYWVPFQWAFSLTYEARKKGLIESDYYQVVVQDEIKKFRTGLAWICNYDWVPIPI 234
Query: 64 VYTQ 67
+Y Q
Sbjct: 235 MYPQ 238
>sp|P34577|YNX4_CAEEL Uncharacterized protein T20G5.4 OS=Caenorhabditis elegans
GN=T20G5.4 PE=3 SV=2
Length = 456
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 9 KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVY 65
KY+LP WA ++ AR+E I D+ V I ++ R L + YD V LP++Y
Sbjct: 180 KYFLPFNWAWALVYNARKEGLIEGDYYVTVISEDIKKFRTGLAWVCNYDWVPLPIIY 236
>sp|Q17528|YQE3_CAEEL Uncharacterized protein B0564.3 OS=Caenorhabditis elegans
GN=B0564.3 PE=3 SV=1
Length = 450
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 8 TKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
TKYW+P WA + +AR++ I SD+ + E+ R + + YD V LPL+Y Q
Sbjct: 184 TKYWIPANWALCMTYKARKDGYIESDYFKAQMEGEIRTWRTNIEWVCNYDWVPLPLMYPQ 243
>sp|Q21973|BEST1_CAEEL Bestrophin-1 OS=Caenorhabditis elegans GN=R13.3 PE=2 SV=2
Length = 525
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 7 MTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYT 66
+ KY++P+ W+T ++ AR E I +D ++ I + + R L L YD V +PL Y
Sbjct: 181 LQKYFVPIQWSTGLLVDARAEGKIAADLLMNEIGKHIIEFRKMLALLSNYDWVPIPLAYP 240
Query: 67 Q 67
Q
Sbjct: 241 Q 241
>sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4 OS=Caenorhabditis elegans
GN=F32G8.4 PE=3 SV=3
Length = 405
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
M+ P K+++P+ W N+I + +++ I S M +L ++ R L YD +
Sbjct: 162 MNTDAPHGKWFIPILWIVNLIKKQKQKGIIDSIQM-DMLLKQVYSYRDGFAMLFVYDWIK 220
Query: 61 LPLVYTQ 67
+PLVYTQ
Sbjct: 221 IPLVYTQ 227
>sp|Q17529|YQE4_CAEEL Uncharacterized protein B0564.4 OS=Caenorhabditis elegans
GN=B0564.4 PE=3 SV=2
Length = 421
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 9 KYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
KYW+P WA + +AR++ I SD+ + E+ R + + YD V LPL+Y Q
Sbjct: 185 KYWIPANWALCMTYKARKDGYIESDYFKAQMEGEIRTWRTNIEWVCNYDWVPLPLMYPQ 243
>sp|Q22566|YSV1_CAEEL Uncharacterized protein T19C3.1 OS=Caenorhabditis elegans
GN=T19C3.1 PE=3 SV=2
Length = 501
Score = 36.2 bits (82), Expect = 0.066, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 10 YWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
YW+P+ WA ++ A ++ I ++ + + R + +LI +D + +P+ Y Q
Sbjct: 204 YWVPINWANSLALVAHQQKLIDQPTAFNNVIFAIKEFRVAMETLIKFDAIPIPIAYPQ 261
>sp|Q94175|YCEL_CAEEL Uncharacterized protein C43G2.4 OS=Caenorhabditis elegans
GN=C43G2.4 PE=3 SV=2
Length = 399
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
++E P ++ PL W +I+ A A S + V NE+ R L +D V
Sbjct: 171 INEPSPGIRWLTPLHWVQQLID-AEITAGRGSVNYVSVATNELKAYRISFRRLYCHDWVC 229
Query: 61 LPLVYTQ 67
+PLVYTQ
Sbjct: 230 VPLVYTQ 236
>sp|O45435|YV4Q_CAEEL Uncharacterized protein F32B6.9 OS=Caenorhabditis elegans
GN=F32B6.9 PE=3 SV=1
Length = 413
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 1 MDEKHPMTKYWLPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60
M ++ +++ PL W I+ + E T+ + + E+ R L L YD V
Sbjct: 175 MHAENESSRWITPLHWIQLIMRQVEEEHKPTAS-LFNQFVGELRIFRQSLRKLYSYDWVC 233
Query: 61 LPLVYTQ 67
+PLVYTQ
Sbjct: 234 VPLVYTQ 240
>sp|O45363|YSWJ_CAEEL Uncharacterized protein F14H3.2 OS=Caenorhabditis elegans
GN=F14H3.2 PE=3 SV=1
Length = 434
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 3 EKHPMTKY---WLPLTWATNIINR--ARREATITSDHMVQTILNEMSDIRWRLGSLIGYD 57
+K P Y ++P+TW +I+ + ++ E + D T+ E++D ++ L YD
Sbjct: 187 KKVPCKTYAESFVPITWIMSILQKFASKNEENLYYD----TVYLEITDFYKKIIKLTRYD 242
Query: 58 NVNLPLVYTQ 67
+ +PL Y Q
Sbjct: 243 LIPIPLAYPQ 252
>sp|Q17851|YAVK_CAEEL Uncharacterized protein C09B9.3 OS=Caenorhabditis elegans
GN=C09B9.3 PE=2 SV=2
Length = 884
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 24/56 (42%)
Query: 12 LPLTWATNIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPLVYTQ 67
+P+ WA ++ R S + + E+SD L + D V +PL Y Q
Sbjct: 180 VPIRWAIQVLRHQYRSGNFFSHSVYRATWKEVSDFETHLSRVRKVDWVPIPLAYPQ 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,823,104
Number of Sequences: 539616
Number of extensions: 686360
Number of successful extensions: 1475
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1454
Number of HSP's gapped (non-prelim): 24
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)