Query psy2164
Match_columns 68
No_of_seqs 105 out of 191
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 17:57:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_E Cytochrome C oxidase po 69.8 1.6 5.6E-05 27.2 1.1 21 45-65 28-48 (109)
2 1wty_A Hypothetical protein TT 68.0 8.8 0.0003 22.9 4.2 31 18-52 57-87 (119)
3 1zv1_A Doublesex protein; UBA 62.9 2.5 8.6E-05 24.1 0.9 26 41-66 7-32 (65)
4 2y69_E Cytochrome C oxidase su 62.7 2.7 9.1E-05 27.6 1.1 21 45-65 71-91 (152)
5 1jog_A Hypothetical protein HI 59.7 13 0.00043 23.3 3.9 30 18-51 81-110 (146)
6 3cve_A Homer protein homolog 1 56.9 5.4 0.00018 23.0 1.6 19 37-55 52-70 (72)
7 3fxd_A Protein ICMQ; helix bun 56.2 24 0.00081 19.5 4.6 36 17-52 13-48 (57)
8 3cvf_A Homer-3, homer protein 53.3 6.6 0.00023 23.0 1.6 19 37-55 58-76 (79)
9 3v1a_A Computational design, M 50.0 9.8 0.00033 20.4 1.9 28 17-44 13-40 (48)
10 2jz1_A Protein doublesex; sex 47.8 6.2 0.00021 23.3 0.9 27 40-66 6-32 (80)
11 4e17_B Catenin alpha-1; four h 47.7 13 0.00044 19.3 2.0 23 33-55 11-33 (40)
12 1wwp_A Hypothetical protein TT 42.5 46 0.0016 19.6 4.3 32 19-52 58-89 (119)
13 1yzm_A FYVE-finger-containing 41.3 19 0.00065 19.4 2.2 27 17-43 14-40 (51)
14 1z0j_B FYVE-finger-containing 34.4 26 0.00089 19.4 2.1 26 18-43 22-47 (59)
15 4e18_B Catenin alpha-1; four h 34.3 26 0.00088 19.5 2.0 23 33-55 30-52 (59)
16 1z0k_B FYVE-finger-containing 33.9 28 0.00094 19.8 2.2 27 17-43 32-58 (69)
17 3bhp_A UPF0291 protein YNZC; N 33.5 63 0.0022 17.8 3.9 35 17-51 10-46 (60)
18 3gp6_A Protein PAGP, protein C 33.4 9.4 0.00032 25.2 0.1 12 55-66 117-128 (163)
19 2xf7_A GP23.1; viral protein; 30.4 51 0.0017 17.6 2.7 14 18-31 21-34 (51)
20 1fyj_A Multifunctional aminoac 29.7 67 0.0023 16.9 5.0 40 19-60 14-53 (57)
21 3plv_C 66 kDa U4/U6.U5 small n 28.6 37 0.0013 15.1 1.7 13 40-52 4-16 (21)
22 2wh0_Q Pkcev3, protein kinase 28.3 34 0.0012 16.4 1.6 17 41-57 13-29 (31)
23 1ygm_A Hypothetical protein BS 27.8 80 0.0027 19.4 3.7 29 18-46 76-105 (118)
24 3dez_A OPRT, oprtase, orotate 27.4 50 0.0017 22.2 3.0 29 18-51 211-239 (243)
25 2ehg_A Ribonuclease HI; RNAse 23.9 65 0.0022 19.0 2.8 24 35-60 94-117 (149)
26 2odv_A Plectin 1, HD1; plakin 23.5 1.6E+02 0.0056 19.6 5.0 35 15-49 25-59 (235)
27 3fx7_A Putative uncharacterize 23.5 85 0.0029 18.7 3.2 22 30-51 5-26 (94)
28 2gsc_A Putative uncharacterize 22.6 1.3E+02 0.0045 17.9 4.3 35 19-54 85-119 (128)
29 2rld_A Uncharacterized protein 21.8 1.3E+02 0.0046 17.7 4.5 36 19-55 81-116 (121)
30 3may_A RV0203, possible export 21.6 89 0.0031 18.9 3.0 18 34-51 64-81 (101)
31 1d2d_A TRNA synthetase, tRNA l 21.5 1.1E+02 0.0036 16.5 5.3 42 19-62 11-52 (59)
32 1ez3_A Syntaxin-1A; three heli 21.1 70 0.0024 18.5 2.4 23 32-54 3-25 (127)
33 2czy_A Paired amphipathic heli 20.8 1E+02 0.0035 17.1 3.0 32 17-49 7-38 (77)
34 2kp7_A Crossover junction endo 20.4 1.3E+02 0.0045 17.1 4.4 32 14-46 19-50 (87)
No 1
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.77 E-value=1.6 Score=27.17 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.3
Q ss_pred HHHHhhchhhcCcceeccccc
Q psy2164 45 DIRWRLGSLIGYDNVNLPLVY 65 (68)
Q Consensus 45 ~fR~~l~~L~~yDWVpIPLvY 65 (68)
+.|.+|..|+.||.||=|=+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii 48 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKII 48 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHHHHhccccCCCcHHH
Confidence 679999999999999988553
No 2
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=67.96 E-value=8.8 Score=22.87 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhch
Q psy2164 18 TNIINRARREATITSDHMVQTILNEMSDIRWRLGS 52 (68)
Q Consensus 18 ~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~ 52 (68)
-..++.|.+.|.|.++ ..+-++..||+.+..
T Consensus 57 rd~~r~a~~~glI~~~----~~w~~m~~~RN~~vH 87 (119)
T 1wty_A 57 RAAIRGAFQVGLLPED----PFWLEMLELRNLTNH 87 (119)
T ss_dssp HHHHHHHHHHTSSCCC----HHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCCcH----HHHHHHHHHhhHhcc
Confidence 3568899999999877 578889999987543
No 3
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=62.90 E-value=2.5 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.6
Q ss_pred HHHHHHHHhhchhhcCcceecccccc
Q psy2164 41 NEMSDIRWRLGSLIGYDNVNLPLVYT 66 (68)
Q Consensus 41 ~ei~~fR~~l~~L~~yDWVpIPLvYt 66 (68)
+++.+.=++|-..+.|-|=..||+|.
T Consensus 7 d~Ll~~c~kLLEkf~YpWEmMpLMYV 32 (65)
T 1zv1_A 7 DVFLDYCQKLLEKFRYPWELMPLMYV 32 (65)
T ss_dssp HHHHHHHHHHHHHTTCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHhHHHHH
Confidence 56777888888899999999999984
No 4
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.74 E-value=2.7 Score=27.58 Aligned_cols=21 Identities=33% Similarity=0.654 Sum_probs=18.4
Q ss_pred HHHHhhchhhcCcceeccccc
Q psy2164 45 DIRWRLGSLIGYDNVNLPLVY 65 (68)
Q Consensus 45 ~fR~~l~~L~~yDWVpIPLvY 65 (68)
+.|.+|..|+.||.||=|=+.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii 91 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKII 91 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHH
T ss_pred HHHHHHHHHhccccCCCcHHH
Confidence 689999999999999988553
No 5
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=59.70 E-value=13 Score=23.25 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q psy2164 18 TNIINRARREATITSDHMVQTILNEMSDIRWRLG 51 (68)
Q Consensus 18 ~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~ 51 (68)
-.+++.|.+.|.|.++ ..+-++..||+.+.
T Consensus 81 rd~~r~a~~~GlI~d~----~~w~~m~~~RN~tv 110 (146)
T 1jog_A 81 KDILREALRFGLIGDM----SKWVAYRDMRNITS 110 (146)
T ss_dssp HHHHHHHHHTTSCSCH----HHHHHHHHHHTTGG
T ss_pred HHHHHHHHHcCCCCcH----HHHHHHHHHhhHhc
Confidence 3578899999999876 57788888987654
No 6
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.89 E-value=5.4 Score=23.00 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhchhhc
Q psy2164 37 QTILNEMSDIRWRLGSLIG 55 (68)
Q Consensus 37 ~~l~~ei~~fR~~l~~L~~ 55 (68)
..=++|+.+||.+|+.|-.
T Consensus 52 d~KI~eL~elrq~LakL~~ 70 (72)
T 3cve_A 52 DGKIFELTELRDNLAKLLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHhcc
Confidence 3346799999999998854
No 7
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=56.21 E-value=24 Score=19.53 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhch
Q psy2164 17 ATNIINRARREATITSDHMVQTILNEMSDIRWRLGS 52 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~ 52 (68)
++..+.+|.++|--+...++..|-..+++.|.++..
T Consensus 13 ILkaLdeaIe~GPWe~SNFLRvIGKnL~eIRd~F~~ 48 (57)
T 3fxd_A 13 ILKALNDAIEKGPWDKSNFLRVIGKKLIAIRDRFLK 48 (57)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhHHHHHHHHHH
Confidence 356688899999999899999999999999998764
No 8
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.31 E-value=6.6 Score=22.97 Aligned_cols=19 Identities=32% Similarity=0.356 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhchhhc
Q psy2164 37 QTILNEMSDIRWRLGSLIG 55 (68)
Q Consensus 37 ~~l~~ei~~fR~~l~~L~~ 55 (68)
.-=++|+.+||.+|+.|-.
T Consensus 58 d~KI~eL~elRqgLakL~~ 76 (79)
T 3cvf_A 58 DVSLFELSELREGLARLAE 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcc
Confidence 3446799999999998754
No 9
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=50.00 E-value=9.8 Score=20.35 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q psy2164 17 ATNIINRARREATITSDHMVQTILNEMS 44 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~ei~ 44 (68)
+-+.+..|++.|+++.-..++.=++||.
T Consensus 13 I~~~I~qAk~~rRfdEV~~L~~NL~EL~ 40 (48)
T 3v1a_A 13 IHSFIHQAKAAGRMDEVRTLQENLHQLM 40 (48)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3467899999999976666666666664
No 10
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=47.84 E-value=6.2 Score=23.31 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhchhhcCcceecccccc
Q psy2164 40 LNEMSDIRWRLGSLIGYDNVNLPLVYT 66 (68)
Q Consensus 40 ~~ei~~fR~~l~~L~~yDWVpIPLvYt 66 (68)
.+++.+.=++|-..+.|-|=..||+|.
T Consensus 6 ~e~ll~~c~kLLEkF~YpWEMMpLMyV 32 (80)
T 2jz1_A 6 QDVFLDYCQKLLEKFRYPWELMPLMYV 32 (80)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 467888888999999999999999983
No 11
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=47.71 E-value=13 Score=19.26 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhchhhc
Q psy2164 33 DHMVQTILNEMSDIRWRLGSLIG 55 (68)
Q Consensus 33 ~~~~~~l~~ei~~fR~~l~~L~~ 55 (68)
|..-+.|+.|.+..|+.|+.|.+
T Consensus 11 ~~rkerIv~eCnavrqALQdLls 33 (40)
T 4e17_B 11 DDRRERIVAECNAVRQALQDLLS 33 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999998863
No 12
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=42.53 E-value=46 Score=19.64 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=23.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhch
Q psy2164 19 NIINRARREATITSDHMVQTILNEMSDIRWRLGS 52 (68)
Q Consensus 19 ~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~ 52 (68)
..++.|.+.|.|.++ ....+-++..||+.+..
T Consensus 58 d~~r~a~~~glI~~~--~~~~w~~m~~~RN~~vH 89 (119)
T 1wwp_A 58 GVIRLAREVGLLRDE--EARLALGMVDDRSLTVH 89 (119)
T ss_dssp HHHHHHHHHTSSCHH--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCCch--HHHHHHHHHHHhhHhcc
Confidence 568889999999644 33467788899987543
No 13
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=41.32 E-value=19 Score=19.39 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy2164 17 ATNIINRARREATITSDHMVQTILNEM 43 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~ei 43 (68)
+-+.+..|+++|+++.-..+..=+.||
T Consensus 14 I~~~I~qAk~~~r~DEV~~Le~NLrEL 40 (51)
T 1yzm_A 14 ITSFIRQAKAAGRMDEVRTLQENLRQL 40 (51)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 346789999999986444444433333
No 14
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=34.37 E-value=26 Score=19.43 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy2164 18 TNIINRARREATITSDHMVQTILNEM 43 (68)
Q Consensus 18 ~~l~~~ar~eg~I~s~~~~~~l~~ei 43 (68)
-+.+..|++.|+.+.-..+..=+.||
T Consensus 22 ~~yI~qAk~~~R~DEV~~Le~NLrEL 47 (59)
T 1z0j_B 22 KAYIFDAKQCGRLDEVEVLTENLREL 47 (59)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46788999999986444444444443
No 15
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=34.28 E-value=26 Score=19.49 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHhhchhhc
Q psy2164 33 DHMVQTILNEMSDIRWRLGSLIG 55 (68)
Q Consensus 33 ~~~~~~l~~ei~~fR~~l~~L~~ 55 (68)
|..-+.|+.|.++.|+.|+.|..
T Consensus 30 ~~rke~Iv~eCnavrqALQdLls 52 (59)
T 4e18_B 30 DDRRERIVAECNAVRQALQDLLS 52 (59)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34457899999999999998863
No 16
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=33.94 E-value=28 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHH
Q psy2164 17 ATNIINRARREATITSDHMVQTILNEM 43 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~ei 43 (68)
+-+.+..|++.|+++.-..+..=+.||
T Consensus 32 I~~yI~qAk~~~r~DEV~tLe~NLrEL 58 (69)
T 1z0k_B 32 ITSFIRQAKAAGRMDEVRTLQENLRQL 58 (69)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 446788999999986444444443333
No 17
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=33.49 E-value=63 Score=17.83 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHH--HHHHHHhhc
Q psy2164 17 ATNIINRARREATITSDHMVQTILNE--MSDIRWRLG 51 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~e--i~~fR~~l~ 51 (68)
+..|..+++.+|+=..+..-+..+.+ |..||.++.
T Consensus 10 INeLakK~K~~gLT~eEk~EQ~~LR~eYl~~fR~~~r 46 (60)
T 3bhp_A 10 INELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMK 46 (60)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999987655544444332 556666653
No 18
>3gp6_A Protein PAGP, protein CRCA; palmitoyltransferase, beta-barrel, outer membrane enzyme, PA MPD, transferase; HET: SDS; 1.40A {Escherichia coli} SCOP: f.4.1.2 PDB: 1mm4_A 1mm5_A 1thq_A*
Probab=33.39 E-value=9.4 Score=25.22 Aligned_cols=12 Identities=17% Similarity=0.634 Sum_probs=9.5
Q ss_pred cCcceecccccc
Q psy2164 55 GYDNVNLPLVYT 66 (68)
Q Consensus 55 ~yDWVpIPLvYt 66 (68)
.|++||||++-|
T Consensus 117 d~~yiP~P~~LP 128 (163)
T 3gp6_A 117 NWNYIPLPVLLP 128 (163)
T ss_dssp GGTTCEEEEEEE
T ss_pred CCCccccceeee
Confidence 378999998765
No 19
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=30.44 E-value=51 Score=17.58 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=12.0
Q ss_pred HHHHHHHHHhCCCC
Q psy2164 18 TNIINRARREATIT 31 (68)
Q Consensus 18 ~~l~~~ar~eg~I~ 31 (68)
..++++|...|+|+
T Consensus 21 ~~~mR~AV~~G~iT 34 (51)
T 2xf7_A 21 EELLRVAVNAGDLT 34 (51)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHhcCccc
Confidence 35789999999997
No 20
>1fyj_A Multifunctional aminoacyl-tRNA synthetase; helix-turn-helix, ligase; NMR {Homo sapiens} SCOP: a.16.1.3
Probab=29.66 E-value=67 Score=16.91 Aligned_cols=40 Identities=5% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhhcCccee
Q psy2164 19 NIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVN 60 (68)
Q Consensus 19 ~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~~yDWVp 60 (68)
+.++....++ .+-.....-+.+|...+..+..+..=||.|
T Consensus 14 ~~VR~LKa~k--A~k~~i~~aV~~Ll~lK~~~~~~tg~~~~p 53 (57)
T 1fyj_A 14 DVVRELKAKK--APKEDVDAAVKQLLSLKAEYKEKTGQEYKP 53 (57)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHHHSCCSCS
T ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 4566665555 345678888899999999999999999987
No 21
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=28.60 E-value=37 Score=15.08 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhch
Q psy2164 40 LNEMSDIRWRLGS 52 (68)
Q Consensus 40 ~~ei~~fR~~l~~ 52 (68)
++|-++.|.++|.
T Consensus 4 iEEtnk~r~~lGL 16 (21)
T 3plv_C 4 IEETNELRASLGL 16 (26)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 5788999999874
No 22
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=28.27 E-value=34 Score=16.39 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=10.6
Q ss_pred HHHHHHHHhhchhhcCc
Q psy2164 41 NEMSDIRWRLGSLIGYD 57 (68)
Q Consensus 41 ~ei~~fR~~l~~L~~yD 57 (68)
+||++..+++..-.+||
T Consensus 13 qeikelennirkalsfd 29 (31)
T 2wh0_Q 13 QEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 46666666666666665
No 23
>1ygm_A Hypothetical protein BSU31320; alpha-helical bundle, integral membrane protein; NMR {Bacillus subtilis subsp}
Probab=27.83 E-value=80 Score=19.45 Aligned_cols=29 Identities=17% Similarity=0.347 Sum_probs=23.5
Q ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHHH
Q psy2164 18 TNIINRARRE-ATITSDHMVQTILNEMSDI 46 (68)
Q Consensus 18 ~~l~~~ar~e-g~I~s~~~~~~l~~ei~~f 46 (68)
..|+++||.. |--.-..-+++++.||.+|
T Consensus 76 ael~~qA~~~yG~e~~N~klN~IIkqiLs~ 105 (118)
T 1ygm_A 76 AELMKQARDMYGQEKLNEKLNTIIKQILSI 105 (118)
T ss_dssp HHHHHHHHHHTSSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 4688999974 7777778899999999876
No 24
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=27.43 E-value=50 Score=22.24 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Q psy2164 18 TNIINRARREATITSDHMVQTILNEMSDIRWRLG 51 (68)
Q Consensus 18 ~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~ 51 (68)
-.|+..|+++|+|..+ -++++.+||.+-.
T Consensus 211 ~dl~~~~~~~~~i~~~-----~~~~~~~~~~~p~ 239 (243)
T 3dez_A 211 SELIKVAKVQGYIDAD-----GLTLLKKFKENQE 239 (243)
T ss_dssp HHHHHHHHHTTSSCHH-----HHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCCHH-----HHHHHHHHHhCHH
Confidence 4688899999999633 3567889998643
No 25
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=23.87 E-value=65 Score=19.02 Aligned_cols=24 Identities=8% Similarity=0.100 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhchhhcCccee
Q psy2164 35 MVQTILNEMSDIRWRLGSLIGYDNVN 60 (68)
Q Consensus 35 ~~~~l~~ei~~fR~~l~~L~~yDWVp 60 (68)
.+..+++++.+...++. ..+-|||
T Consensus 94 ~~~~l~~~i~~l~~~~~--v~~~~V~ 117 (149)
T 2ehg_A 94 RIIPLYEKAIELKKKLN--ATLIWVP 117 (149)
T ss_dssp THHHHHHHHHHHHHHHT--CEEEECC
T ss_pred HHHHHHHHHHHHHhcCC--EEEEEcC
Confidence 46677888888777773 6667765
No 26
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=23.54 E-value=1.6e+02 Score=19.55 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q psy2164 15 TWATNIINRARREATITSDHMVQTILNEMSDIRWR 49 (68)
Q Consensus 15 ~Wa~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~ 49 (68)
.|+-.-+........-.+-..++..+.++++||+.
T Consensus 25 ~WI~~~~~~l~~r~f~~sl~~vq~~l~~f~~fr~~ 59 (235)
T 2odv_A 25 QWMRHHTAAFEERRFPSSFEEIEILWSQFLKFKEM 59 (235)
T ss_dssp HHHHHHHHHHHCC-CCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhc
Confidence 46655555555566667788889999999999974
No 27
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=23.49 E-value=85 Score=18.71 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q psy2164 30 ITSDHMVQTILNEMSDIRWRLG 51 (68)
Q Consensus 30 I~s~~~~~~l~~ei~~fR~~l~ 51 (68)
|.++-.+..+.+||+.|+..++
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq 26 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLR 26 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888877654
No 28
>2gsc_A Putative uncharacterized protein XCC0516; four-helix bundle, homopentamer, pentameric toroid, unknown function; 2.45A {Xanthomonas campestris PV} SCOP: a.29.16.1
Probab=22.57 E-value=1.3e+02 Score=17.89 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhh
Q psy2164 19 NIINRARREATITSDHMVQTILNEMSDIRWRLGSLI 54 (68)
Q Consensus 19 ~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~ 54 (68)
..+.-|++-|+|. +..+..+.+|+.+...-++.+.
T Consensus 85 ~~L~la~~~~yi~-~~~~~~l~~~~~ei~kml~~~i 119 (128)
T 2gsc_A 85 TQVQIAARLGYSR-SEDDQSVRRQVDLVFAKLTALM 119 (128)
T ss_dssp HHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677888885 5556777777777766665543
No 29
>2rld_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.29.16.1
Probab=21.81 E-value=1.3e+02 Score=17.71 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhhc
Q psy2164 19 NIINRARREATITSDHMVQTILNEMSDIRWRLGSLIG 55 (68)
Q Consensus 19 ~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~~ 55 (68)
..+.-|.+.|+|. +..+..+.+|+.+...-++.+.+
T Consensus 81 ~~L~l~~~~~yi~-~~~~~~l~~~~~ei~kmL~~~ik 116 (121)
T 2rld_A 81 YWLELLIRTEYIT-REQYESINNDSTEINKLLISIIK 116 (121)
T ss_dssp HHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677889985 55678888888877777666543
No 30
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=21.59 E-value=89 Score=18.87 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy2164 34 HMVQTILNEMSDIRWRLG 51 (68)
Q Consensus 34 ~~~~~l~~ei~~fR~~l~ 51 (68)
..+..|.+-+.+||+.|+
T Consensus 64 ~dL~~I~qPl~Dl~~rC~ 81 (101)
T 3may_A 64 SDLHALSQPLTDLSTRCS 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHhcC
Confidence 456778899999999997
No 31
>1d2d_A TRNA synthetase, tRNA ligase; tRNA synthetase (ligase), protein transcription; NMR {Cricetulus griseus} SCOP: a.16.1.3 PDB: 1r1b_A
Probab=21.53 E-value=1.1e+02 Score=16.46 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhchhhcCcceecc
Q psy2164 19 NIINRARREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLP 62 (68)
Q Consensus 19 ~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~l~~L~~yDWVpIP 62 (68)
+.++....++ .+......-+.+|...+..+..+..=||-|-+
T Consensus 11 ~~VR~LKa~k--A~k~~i~~aV~~Ll~LK~~~~~~tg~~~~p~~ 52 (59)
T 1d2d_A 11 EVVRKLKAEK--APKAKVTEAVECLLSLKAEYKEKTGKEYVPGL 52 (59)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHHHCSSSSSSCCCSS
T ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 4566665555 45677888999999999999999999998865
No 32
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.09 E-value=70 Score=18.54 Aligned_cols=23 Identities=13% Similarity=0.374 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHHHHHhhchhh
Q psy2164 32 SDHMVQTILNEMSDIRWRLGSLI 54 (68)
Q Consensus 32 s~~~~~~l~~ei~~fR~~l~~L~ 54 (68)
.+..+..+++|+.+.|..+..|.
T Consensus 3 ~~~~m~~F~~~v~~I~~~i~~i~ 25 (127)
T 1ez3_A 3 RDRFMDEFFEQVEEIRGFIDKIA 25 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888887776653
No 33
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=20.80 E-value=1e+02 Score=17.09 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Q psy2164 17 ATNIINRARREATITSDHMVQTILNEMSDIRWR 49 (68)
Q Consensus 17 a~~l~~~ar~eg~I~s~~~~~~l~~ei~~fR~~ 49 (68)
|.+-+++-+. ..-..+..|+.+++-+++|+.+
T Consensus 7 A~~yl~~VK~-~F~~~p~~Y~~FL~im~~~k~~ 38 (77)
T 2czy_A 7 ALTYLDQVKI-RFGSDPATYNGFLEIMKEFKSQ 38 (77)
T ss_dssp HHHHHHHHHH-HTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-HHccChHHHHHHHHHHHHHHHc
Confidence 3444444433 2334678899999999999864
No 34
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=20.41 E-value=1.3e+02 Score=17.12 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy2164 14 LTWATNIINRARREATITSDHMVQTILNEMSDI 46 (68)
Q Consensus 14 i~Wa~~l~~~ar~eg~I~s~~~~~~l~~ei~~f 46 (68)
+.|...+...|++.| ......|...++-|++|
T Consensus 19 ~~wL~e~~~~a~~r~-~k~~~~Y~KA~~sLk~~ 50 (87)
T 2kp7_A 19 VRWLTEWRDEAASRG-RHTRFVFQKALRSLQRY 50 (87)
T ss_dssp HHHHHHHHHHHHHHT-CTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHhC
Confidence 679999999998766 44566666666655543
Done!