RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2164
         (68 letters)



>3k8g_A 30KLP; outmer membrane protein, membrane protei; 1.95A {Treponema
           pallidum} PDB: 3k8h_A 3k8i_A 3k8j_A
          Length = 262

 Score = 26.8 bits (58), Expect = 0.55
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 25  RREATITSDHMVQTILNEMSDIRWRLGSLIGYDNVNLPL 63
           R E   TS+   QT+   + +    +  L+ +  +NLPL
Sbjct: 148 RFEKECTSEGTSQTVALYIKNGGHFITKLLNFPQLNLPL 186


>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase
          3; transferase, pseudo kinase domain, vaccinia related
          kinase, ATP-binding; 2.00A {Homo sapiens}
          Length = 352

 Score = 24.3 bits (53), Expect = 3.8
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 22 NRARREATITSDHMVQ--TILNEMSDIRWRLGSLIG 55
               ++  TS   +   T+L + S  +W+L S   
Sbjct: 16 ENLYFQSMTTSLEALPTGTVLTDKSGRQWKLKSFQT 51


>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate,
          amino acid sequence, binding sites, domain, models,
          molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A
          2kty_A 2kul_A
          Length = 364

 Score = 23.2 bits (50), Expect = 7.8
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 38 TILNEMSDIRWRLGSLIG 55
           I+ +M+   W++G  IG
Sbjct: 27 EIITDMAAAAWKVGLPIG 44


>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
           AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
           AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
           PDB: 2vd6_A*
          Length = 503

 Score = 23.4 bits (51), Expect = 8.0
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 18/56 (32%)

Query: 24  ARR----EATITSDHMVQTILNEMSD-------IRWRLGSLIGYDNVNLPLVYTQK 68
            RR    EA +T+D ++ T+ N           I  R+          LP + T+ 
Sbjct: 358 NRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRI-------RQELPFMATEN 406


>3tif_A Uncharacterized ABC transporter ATP-binding prote;
           nucleotide-binding domain, ABC transporter ATPase; HET:
           ADP; 1.80A {Methanocaldococcus jannaschii dsm
           2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
          Length = 235

 Score = 23.3 bits (51), Expect = 8.2
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 11/39 (28%)

Query: 41  NEMSDIRWR-----------LGSLIGYDNVNLPLVYTQK 68
           +E++ IR             +  L   +NV LPL++  +
Sbjct: 75  DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR 113


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0811    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,038,274
Number of extensions: 43548
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)