RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2164
         (68 letters)



>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
           cardiophyllum) [TaxId: 160510]}
          Length = 360

 Score = 22.3 bits (46), Expect = 8.2
 Identities = 5/38 (13%), Positives = 11/38 (28%)

Query: 5   HPMTKYWLPLTWATNIINRARREATITSDHMVQTILNE 42
                 W  + W   I       ++  +D+ + T    
Sbjct: 248 AKEAATWTAVHWMLVIQKMTDAASSYMTDYYLSTAFQA 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0430    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 254,823
Number of extensions: 8248
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 2
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)