BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2165
(145 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3
Length = 551
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/105 (51%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
MD+ +P+FT+LQF FY+GWLKVAE LI PFGEDDDD E NW+IDR+++ + + VD MH+
Sbjct: 269 MDLVVPVFTILQFLFYMGWLKVAEQLINPFGEDDDDFETNWIIDRNLQVSLLSVDGMHQN 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEAD 105
P + +D YW+E P+ PYT AS RR GS +K+ D
Sbjct: 329 LPPMERDMYWNEAAPQP-PYTAASARSRRHSFMGSTFNISLKKED 372
>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1
Length = 585
Score = 115 bits (287), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct: 269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
P + D YW+E P PYT AS +RR+ GS
Sbjct: 329 LPRMEPDMYWNEPEPHP-PYTAASAQFRRASFMGS 362
>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1
Length = 668
Score = 114 bits (285), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+YIPIFT+LQF FY GWLKVAE LI PFGEDDDD E NW IDR+++ + + VDEMH
Sbjct: 269 LDLYIPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMS 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECY 87
P++ KD YWD+ + PYTLA+ Y
Sbjct: 329 LPKMKKDIYWDDSAARP-PYTLAAADY 354
>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1
Length = 669
Score = 114 bits (284), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/87 (58%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+Y+PIFT+LQF FY GWLKVAE LI PFGEDDDD E NW IDR+++ + + VDEMH
Sbjct: 269 LDLYVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNWCIDRNLQVSLLAVDEMHMS 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECY 87
P++ KD YWD+ + PYTLA+ Y
Sbjct: 329 LPKMKKDIYWDDSAARP-PYTLAAADY 354
>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1
Length = 585
Score = 114 bits (284), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/95 (52%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ +P+FT LQF FY+GWLKVAE LI PFGEDDDD E NW++DR+++ + + VDEMH++
Sbjct: 269 LDLVVPVFTFLQFFFYVGWLKVAEQLINPFGEDDDDFETNWIVDRNLQVSLLAVDEMHQD 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGS 95
P + D YW++ P+ PYT AS +RR+ GS
Sbjct: 329 LPRMEPDMYWNKPEPQP-PYTAASAQFRRASFMGS 362
>sp|Q8WMR7|BEST1_PIG Bestrophin-1 (Fragment) OS=Sus scrofa GN=BEST1 PE=1 SV=1
Length = 428
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
MD+ +P+FT LQF FY GWLKVAE LI PFGEDDDD E NW++DR ++ + VDEMH +
Sbjct: 116 MDLVVPLFTFLQFFFYAGWLKVAEQLINPFGEDDDDFETNWIVDRSLQVSLSAVDEMHHD 175
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSA 96
P + +D YW++ P PYT AS RR GS
Sbjct: 176 LPPMERDMYWNDPEPHP-PYTAASAQSRRPSFFGST 210
>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1
Length = 473
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 63/83 (75%), Gaps = 1/83 (1%)
Query: 2 DVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEH 61
D+Y+P+ T+LQF FY GWLKVAE +I PFGEDDDD E N LIDR+++ + + VDEM++
Sbjct: 285 DMYVPLTTLLQFFFYAGWLKVAEQIINPFGEDDDDFETNQLIDRNLQVSLLSVDEMYQNL 344
Query: 62 PELLKDQYWDEVVPKDLPYTLAS 84
P KDQYWDE P+ PYT+A+
Sbjct: 345 PPAEKDQYWDEDQPQP-PYTVAT 366
>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1
Length = 509
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ +PIFT+LQF FY GWLKVAE LI PFGEDDDD E N+LIDR+ + + + VDEM+++
Sbjct: 269 LDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDD 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLAS 84
L KD YWD + PYT A+
Sbjct: 329 LAVLEKDLYWDAAEAR-APYTAAT 351
>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1
Length = 508
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ +PIFT+LQF FY GWLKVAE LI PFGEDDDD E N+LIDR+ + + + VDEM+++
Sbjct: 269 LDLCVPIFTLLQFFFYAGWLKVAEQLINPFGEDDDDFETNFLIDRNFQVSMLAVDEMYDD 328
Query: 61 HPELLKDQYWDEVVPKDLPYTLAS 84
L KD YWD + PYT A+
Sbjct: 329 LAMLEKDLYWDAAEAR-APYTAAT 351
>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans
GN=ZK688.2 PE=3 SV=1
Length = 632
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 55/74 (74%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+Y PI + LQF FY+GW+KVAE ++ PFGEDDDD E N LIDR+I M+VD+ ++
Sbjct: 269 IDLYFPIMSTLQFIFYMGWMKVAEAMLNPFGEDDDDFECNALIDRNITMVLMMVDQGYDR 328
Query: 61 HPELLKDQYWDEVV 74
P+L +D +WDE V
Sbjct: 329 APDLKRDDFWDEEV 342
>sp|Q17529|YQE4_CAEEL Uncharacterized protein B0564.4 OS=Caenorhabditis elegans
GN=B0564.4 PE=3 SV=2
Length = 421
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 1/74 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+DVY P+ T LQF FY+GWLKV EV++ PFGEDDDD E N LIDR+I +VD +
Sbjct: 273 VDVYFPVMTFLQFIFYMGWLKVIEVMLNPFGEDDDDFETNALIDRNITMGLKMVDNTMKT 332
Query: 61 HPELLKDQYWDEVV 74
PELLKDQ++DEV+
Sbjct: 333 -PELLKDQFFDEVL 345
>sp|Q17528|YQE3_CAEEL Uncharacterized protein B0564.3 OS=Caenorhabditis elegans
GN=B0564.3 PE=3 SV=1
Length = 450
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 56/85 (65%), Gaps = 4/85 (4%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+DVY P+ T LQF FY+GWLKV +V++ PFGEDDDD E N LIDR+I MI D
Sbjct: 273 VDVYFPVMTFLQFIFYMGWLKVIDVMLNPFGEDDDDFETNALIDRNITMGLMIADNPMST 332
Query: 61 HPELLKDQYWDEVVPKDLPYTLASE 85
PEL KD ++DEV D+P + E
Sbjct: 333 -PELRKDPFYDEV---DVPLLYSEE 353
>sp|Q22566|YSV1_CAEEL Uncharacterized protein T19C3.1 OS=Caenorhabditis elegans
GN=T19C3.1 PE=3 SV=2
Length = 501
Score = 84.0 bits (206), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
MD +PI TVL+F F +GW+KVAEVL+ P GEDDDD E+N +ID +I IVD H
Sbjct: 291 MDWPVPIMTVLEFIFVIGWMKVAEVLLNPLGEDDDDFEVNSIIDNNISRGMAIVDTTHGY 350
Query: 61 HPELLKDQYWDEVVPKDLP 79
HP+L+ D + D P LP
Sbjct: 351 HPDLVDDVFSD---PNYLP 366
>sp|P34577|YNX4_CAEEL Uncharacterized protein T20G5.4 OS=Caenorhabditis elegans
GN=T20G5.4 PE=3 SV=2
Length = 456
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 72/127 (56%), Gaps = 7/127 (5%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ P T +QF FY+GWLKV E L+ P+GED DD E N LIDR++ IVDE +++
Sbjct: 268 IDLVFPFMTSIQFVFYMGWLKVGEGLLNPWGEDPDDFETNMLIDRNLAMGLKIVDEGYDK 327
Query: 61 HPELLKDQYWDEV-VPKDLPYTLASECYRR-SEPKGSAEFYKVKEADSLYANIT--SRRK 116
P L KD +WD+ VP Y+ AS +R + +GS K+ + S + RR
Sbjct: 328 TPRLEKDAFWDDTWVPL---YSEASAHEKRYHQRQGSLAHIKIGRSVSQVRMVPRDGRRA 384
Query: 117 SVAPDDV 123
S+ + +
Sbjct: 385 SIVKERI 391
>sp|Q19978|YV6L_CAEEL Uncharacterized protein F32G8.4 OS=Caenorhabditis elegans
GN=F32G8.4 PE=3 SV=3
Length = 405
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 6/105 (5%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+ + PIFT Q FYLGWLKV + L+ PFGEDDDD ELN+++DR+ A+M+ E+ ++
Sbjct: 257 ITILFPIFTTFQMLFYLGWLKVGQYLMNPFGEDDDDFELNYVLDRNTAIAHMMASELSDQ 316
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEAD 105
P + +VP +P+T AS + PK +K+ EA+
Sbjct: 317 LPSIGA-----PMVPA-VPHTRASFKIQDVIPKSHLAGFKLSEAE 355
>sp|O18303|YHS4_CAEEL Uncharacterized protein ZK849.4 OS=Caenorhabditis elegans
GN=ZK849.4 PE=3 SV=2
Length = 602
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 51/75 (68%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D Y P+ T LQF F +GW+KVAE+L+ P GEDDDD ELN +ID+++ IVD +
Sbjct: 350 IDYYFPLMTSLQFIFIVGWMKVAEILLNPMGEDDDDFELNNIIDKNLYIGLAIVDTECGK 409
Query: 61 HPELLKDQYWDEVVP 75
HPE++KD + +P
Sbjct: 410 HPEIVKDTIGKDCLP 424
>sp|Q23369|YHDI_CAEEL Uncharacterized protein ZC518.1 OS=Caenorhabditis elegans
GN=ZC518.1 PE=2 SV=1
Length = 499
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 16/120 (13%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+++PI T++QF Y+GW+KVAE L+ P GEDDDD+E N++ID+++ IVD M
Sbjct: 268 IDLWLPITTMVQFLVYMGWMKVAEALLNPLGEDDDDLECNYIIDKNLITGLSIVDTM--- 324
Query: 61 HPELLKDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAP 120
W D Y++ E ++ + EF+ + + LY+ + S +SV P
Sbjct: 325 ---------WKH---DDTGYSMVEEHMAKTPAQKKDEFWGIDKIAPLYS-MESAERSVHP 371
>sp|O45435|YV4Q_CAEEL Uncharacterized protein F32B6.9 OS=Caenorhabditis elegans
GN=F32B6.9 PE=3 SV=1
Length = 413
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+ +P+FT++QF F++GW KV + L+ PFG DDDDIELN+++DR+++ ++ IV+++ +E
Sbjct: 270 LDLVVPVFTIVQFLFFVGWFKVGQDLMRPFGLDDDDIELNYILDRNVRISFAIVNQL-QE 328
Query: 61 HP----ELLKDQYWDEVVP 75
P E D+ W E+ P
Sbjct: 329 SPIPDFESNDDKLWHEMHP 347
>sp|Q21973|BEST1_CAEEL Bestrophin-1 OS=Caenorhabditis elegans GN=R13.3 PE=2 SV=2
Length = 525
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 7 IFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLK 66
+ ++LQF F +GW+KVAE +I P GEDDDD E N+L+DR++ IVD+ + P + K
Sbjct: 281 VMSILQFIFVVGWMKVAESMINPLGEDDDDFECNYLLDRNLMIGLCIVDDNYNRTPSVEK 340
Query: 67 DQYW-DEVVPKDLPYTLASECYRRSEPKGSAEFYKVK 102
D +W +V P Y++ + ++ GSA Y VK
Sbjct: 341 DAFWCADVEPL---YSVETAMIPKNPQIGSAANYDVK 374
>sp|Q94175|YCEL_CAEEL Uncharacterized protein C43G2.4 OS=Caenorhabditis elegans
GN=C43G2.4 PE=3 SV=2
Length = 399
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D + P+FTV+QF F++GW KV + L+ PFG DDDD EL++++DR+I ++ IVD + ++
Sbjct: 264 LDAFFPLFTVVQFLFFVGWFKVGQDLMRPFGLDDDDFELSYILDRNIVTSFTIVDSLQDD 323
Query: 61 H-PELLKDQYW 70
P+ +D +W
Sbjct: 324 DPPKFEEDVFW 334
>sp|P34319|YKT8_CAEEL Uncharacterized protein C07A9.8 OS=Caenorhabditis elegans
GN=C07A9.8 PE=3 SV=2
Length = 453
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%)
Query: 1 MDVYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEE 60
+D+YIP T+++F FY+GWLKVA L+ PFGED DD + N LIDR++ VD+ +++
Sbjct: 312 VDLYIPFMTIIEFIFYMGWLKVAMELLNPFGEDADDFDCNLLIDRNLAIGLTSVDDAYDQ 371
Query: 61 HPELLKDQY 69
PE+ D +
Sbjct: 372 LPEVKPDVF 380
>sp|Q17851|YAVK_CAEEL Uncharacterized protein C09B9.3 OS=Caenorhabditis elegans
GN=C09B9.3 PE=2 SV=2
Length = 884
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%)
Query: 4 YIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPE 63
YIP+ + QF +GW+KV+E L+ P GEDDDD E+N+LIDR+I IVD + E P
Sbjct: 705 YIPLGNIFQFICLMGWVKVSEALLNPLGEDDDDFEVNFLIDRNIYTGMAIVDTEYAECPA 764
Query: 64 LLKDQYWDEVV 74
L K E +
Sbjct: 765 LKKKNLGKEKI 775
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%)
Query: 4 YIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHI 47
Y PI TV QF +GWLKVAE L+ P GEDDDD E+N+LID +I
Sbjct: 269 YFPIVTVFQFICLMGWLKVAEALLNPLGEDDDDFEVNFLIDSNI 312
>sp|O18304|YHS5_CAEEL Uncharacterized protein ZK849.5 OS=Caenorhabditis elegans
GN=ZK849.5 PE=3 SV=1
Length = 411
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 3 VYIPIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHP 62
+ P+ T Q+ F +GW+KVAE+L+ P GED+DD ELN++ID ++K IV + H
Sbjct: 275 TFFPVLTTFQYIFMMGWMKVAEILLNPMGEDEDDFELNFIIDNNLKNGLDIVSGLCGNHR 334
Query: 63 ELLKDQYWDEVVP 75
+L + + ++ P
Sbjct: 335 KLAEHEIENDCRP 347
>sp|O45363|YSWJ_CAEEL Uncharacterized protein F14H3.2 OS=Caenorhabditis elegans
GN=F14H3.2 PE=3 SV=1
Length = 434
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 6 PIFTVLQFCFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELL 65
P+ T LQF F +G +KVAE+L+ P G+DD++ E N+++D+++ IV H E PEL
Sbjct: 286 PLLTTLQFIFLVGCMKVAEILLNPMGQDDENFECNYVMDKNLFVGLTIVSSEHTECPEL- 344
Query: 66 KDQYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYA 125
+EV+ D +C + E K E K E+ A +S + D+V
Sbjct: 345 -----EEVIGDDYVPWYPDDC-KSKEEKNQEELKKYLESVDFQAVTSSDQGE--NDEVST 396
Query: 126 DYEIEWN 132
++E N
Sbjct: 397 MMKVEQN 403
>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 PE=1 SV=3
Length = 2179
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 14 CFYLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKA-AYMIVDEMHEEHPELLKD----- 67
CFY G + DD + + + H+ + A+ IV+E H+EH L+K
Sbjct: 766 CFYDG-----------YSHDDAETQYGITVLNHMGSMAFRIVNE-HDEHKTLVKIRVYHR 813
Query: 68 ----QYWDEVVPKDLPYTLASECYRRSEPKGSAEFYKVKEAD 105
+ W P+ LPYT R + PK + K ++ D
Sbjct: 814 AKHVEAWIPRAPRALPYTSIG---RTNYPKNTEPVIKKRKGD 852
>sp|P35489|ODP2_ACHLA Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase complex OS=Acholeplasma laidlawii GN=pdhC
PE=1 SV=1
Length = 544
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 91 EPKGSAEFYKVKEADSLYANITSRRKSVAPDDVYADYEIEWNIFREFQGEA 141
+P+G E K+ +N +R KS+ P+ V D EI + F+ EA
Sbjct: 310 KPQGDVEVVKITRLRKAVSNAMTRSKSIIPETVLMD-EINVDALVNFRNEA 359
>sp|P27884|CAC1A_RABIT Voltage-dependent P/Q-type calcium channel subunit alpha-1A
OS=Oryctolagus cuniculus GN=CACNA1A PE=1 SV=1
Length = 2424
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 16 YLGWLKVAEVLIGPFGEDDDDIELNWLIDRHIKAAYMIVDEMHEEHPELLKDQYWDEVVP 75
Y+ W+ AE +I ED+ D+E D ++ A + + HPE +DQ D +
Sbjct: 392 YMEWISKAEEVI--LAEDETDVEQRHPFDGALRRATIKKSKTDLLHPEEAEDQLAD-IAS 448
Query: 76 KDLPYTLASECYRRSEPKGSAEFYKVKEADSLY 108
P+ AS + ++ + S+ F+K + Y
Sbjct: 449 VGSPFARAS--IKSAKLENSSFFHKKERRMRFY 479
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,711,532
Number of Sequences: 539616
Number of extensions: 2437950
Number of successful extensions: 5602
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5572
Number of HSP's gapped (non-prelim): 31
length of query: 145
length of database: 191,569,459
effective HSP length: 106
effective length of query: 39
effective length of database: 134,370,163
effective search space: 5240436357
effective search space used: 5240436357
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)